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Genes within 1Mb (chr1:63190882:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -402529 sc-eQTL 6.64e-01 -0.0317 0.0729 0.53 B L1
ENSG00000088035 ALG6 -176693 sc-eQTL 2.36e-03 0.228 0.0739 0.53 B L1
ENSG00000116641 DOCK7 502496 sc-eQTL 6.24e-01 0.0371 0.0755 0.53 B L1
ENSG00000125703 ATG4C 406750 sc-eQTL 1.77e-01 0.0708 0.0523 0.53 B L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.30e-01 -0.0814 0.0834 0.53 B L1
ENSG00000162607 USP1 754585 sc-eQTL 7.92e-01 0.0192 0.0725 0.53 B L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 2.77e-02 -0.188 0.0847 0.53 B L1
ENSG00000079739 PGM1 -402529 sc-eQTL 9.01e-01 -0.00785 0.0632 0.53 CD4T L1
ENSG00000088035 ALG6 -176693 sc-eQTL 7.82e-01 0.0193 0.0698 0.53 CD4T L1
ENSG00000116641 DOCK7 502496 sc-eQTL 8.00e-01 0.0179 0.0707 0.53 CD4T L1
ENSG00000125703 ATG4C 406750 sc-eQTL 9.16e-01 0.00606 0.0571 0.53 CD4T L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.07e-01 -0.102 0.0807 0.53 CD4T L1
ENSG00000162607 USP1 754585 sc-eQTL 3.68e-01 0.0499 0.0553 0.53 CD4T L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 8.73e-01 -0.0116 0.0727 0.53 CD4T L1
ENSG00000079739 PGM1 -402529 sc-eQTL 9.96e-01 0.000313 0.0692 0.53 CD8T L1
ENSG00000088035 ALG6 -176693 sc-eQTL 5.24e-01 -0.0486 0.0762 0.53 CD8T L1
ENSG00000116641 DOCK7 502496 sc-eQTL 2.37e-01 -0.0914 0.077 0.53 CD8T L1
ENSG00000125703 ATG4C 406750 sc-eQTL 3.16e-02 0.157 0.0726 0.53 CD8T L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.23e-01 -0.0291 0.082 0.53 CD8T L1
ENSG00000162607 USP1 754585 sc-eQTL 4.79e-01 -0.0453 0.0638 0.53 CD8T L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 9.05e-02 -0.138 0.0812 0.53 CD8T L1
ENSG00000079739 PGM1 -402529 sc-eQTL 5.42e-01 0.0468 0.0766 0.532 DC L1
ENSG00000088035 ALG6 -176693 sc-eQTL 2.98e-01 0.0824 0.0789 0.532 DC L1
ENSG00000116641 DOCK7 502496 sc-eQTL 2.53e-01 -0.0926 0.0808 0.532 DC L1
ENSG00000125703 ATG4C 406750 sc-eQTL 1.65e-01 -0.088 0.0632 0.532 DC L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 5.40e-01 -0.0543 0.0886 0.532 DC L1
ENSG00000162607 USP1 754585 sc-eQTL 8.44e-02 -0.133 0.0769 0.532 DC L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 5.55e-01 -0.0456 0.0771 0.532 DC L1
ENSG00000079739 PGM1 -402529 sc-eQTL 9.45e-01 0.00518 0.0748 0.53 Mono L1
ENSG00000088035 ALG6 -176693 sc-eQTL 8.94e-03 0.203 0.0768 0.53 Mono L1
ENSG00000116641 DOCK7 502496 sc-eQTL 1.32e-01 -0.113 0.075 0.53 Mono L1
ENSG00000125703 ATG4C 406750 sc-eQTL 7.75e-01 -0.0146 0.051 0.53 Mono L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 1.44e-01 -0.118 0.0802 0.53 Mono L1
ENSG00000162607 USP1 754585 sc-eQTL 9.65e-01 0.00288 0.0662 0.53 Mono L1
ENSG00000240563 L1TD1 996033 sc-eQTL 7.47e-01 0.0199 0.0618 0.53 Mono L1
ENSG00000079739 PGM1 -402529 sc-eQTL 2.86e-01 -0.0696 0.0651 0.53 NK L1
ENSG00000088035 ALG6 -176693 sc-eQTL 3.85e-01 -0.0665 0.0764 0.53 NK L1
ENSG00000116641 DOCK7 502496 sc-eQTL 3.47e-01 -0.0592 0.0629 0.53 NK L1
ENSG00000125703 ATG4C 406750 sc-eQTL 7.44e-01 0.0221 0.0677 0.53 NK L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.01e-01 0.107 0.0838 0.53 NK L1
ENSG00000162607 USP1 754585 sc-eQTL 8.41e-01 -0.0151 0.0752 0.53 NK L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 6.11e-01 0.0465 0.0913 0.53 NK L1
ENSG00000079739 PGM1 -402529 sc-eQTL 8.70e-01 0.0121 0.0739 0.53 Other_T L1
ENSG00000088035 ALG6 -176693 sc-eQTL 4.50e-01 0.0562 0.0742 0.53 Other_T L1
ENSG00000116641 DOCK7 502496 sc-eQTL 6.71e-01 0.0323 0.0758 0.53 Other_T L1
ENSG00000125703 ATG4C 406750 sc-eQTL 3.14e-02 0.141 0.0649 0.53 Other_T L1
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.31e-01 0.0698 0.058 0.53 Other_T L1
ENSG00000162607 USP1 754585 sc-eQTL 7.97e-01 -0.013 0.0505 0.53 Other_T L1
ENSG00000203965 EFCAB7 -332490 sc-eQTL 5.38e-01 0.0554 0.0898 0.53 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -402529 sc-eQTL 8.56e-01 -0.0177 0.0969 0.52 B_Activated L2
ENSG00000088035 ALG6 -176693 sc-eQTL 8.44e-01 -0.0183 0.0929 0.52 B_Activated L2
ENSG00000116641 DOCK7 502496 sc-eQTL 1.10e-01 -0.138 0.0858 0.52 B_Activated L2
ENSG00000125703 ATG4C 406750 sc-eQTL 7.40e-01 -0.0302 0.0909 0.52 B_Activated L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 1.89e-02 -0.207 0.0875 0.52 B_Activated L2
ENSG00000162607 USP1 754585 sc-eQTL 8.03e-01 0.024 0.0963 0.52 B_Activated L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 9.15e-01 0.00902 0.0841 0.52 B_Activated L2
ENSG00000079739 PGM1 -402529 sc-eQTL 3.86e-01 -0.0772 0.0888 0.528 B_Intermediate L2
ENSG00000088035 ALG6 -176693 sc-eQTL 7.94e-01 0.0236 0.0904 0.528 B_Intermediate L2
ENSG00000116641 DOCK7 502496 sc-eQTL 4.44e-01 0.0661 0.0862 0.528 B_Intermediate L2
ENSG00000125703 ATG4C 406750 sc-eQTL 5.74e-01 -0.0412 0.073 0.528 B_Intermediate L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.03e-01 0.0333 0.087 0.528 B_Intermediate L2
ENSG00000162607 USP1 754585 sc-eQTL 4.25e-01 0.0694 0.0868 0.528 B_Intermediate L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 2.93e-01 -0.0907 0.086 0.528 B_Intermediate L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.50e-01 -0.00549 0.0872 0.532 B_Memory L2
ENSG00000088035 ALG6 -176693 sc-eQTL 1.42e-02 0.216 0.0874 0.532 B_Memory L2
ENSG00000116641 DOCK7 502496 sc-eQTL 1.69e-01 0.114 0.0828 0.532 B_Memory L2
ENSG00000125703 ATG4C 406750 sc-eQTL 5.22e-01 -0.0506 0.0789 0.532 B_Memory L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.31e-01 -0.108 0.0901 0.532 B_Memory L2
ENSG00000162607 USP1 754585 sc-eQTL 2.65e-01 0.102 0.0909 0.532 B_Memory L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 8.04e-01 -0.0223 0.0897 0.532 B_Memory L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.17e-01 0.00911 0.0873 0.53 B_Naive1 L2
ENSG00000088035 ALG6 -176693 sc-eQTL 8.78e-03 0.228 0.0862 0.53 B_Naive1 L2
ENSG00000116641 DOCK7 502496 sc-eQTL 2.56e-01 -0.0954 0.0837 0.53 B_Naive1 L2
ENSG00000125703 ATG4C 406750 sc-eQTL 4.35e-01 0.0505 0.0646 0.53 B_Naive1 L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.98e-01 -0.0725 0.0857 0.53 B_Naive1 L2
ENSG00000162607 USP1 754585 sc-eQTL 5.22e-01 0.0483 0.0754 0.53 B_Naive1 L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 6.61e-02 -0.168 0.0908 0.53 B_Naive1 L2
ENSG00000079739 PGM1 -402529 sc-eQTL 7.06e-01 0.0325 0.0858 0.532 B_Naive2 L2
ENSG00000088035 ALG6 -176693 sc-eQTL 7.09e-01 0.0334 0.0895 0.532 B_Naive2 L2
ENSG00000116641 DOCK7 502496 sc-eQTL 4.66e-01 0.0628 0.086 0.532 B_Naive2 L2
ENSG00000125703 ATG4C 406750 sc-eQTL 2.64e-01 0.0926 0.0826 0.532 B_Naive2 L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 6.06e-01 -0.0464 0.0898 0.532 B_Naive2 L2
ENSG00000162607 USP1 754585 sc-eQTL 4.27e-02 -0.173 0.0847 0.532 B_Naive2 L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.06e-01 -0.0338 0.0894 0.532 B_Naive2 L2
ENSG00000079739 PGM1 -402529 sc-eQTL 6.02e-01 0.0455 0.0871 0.53 CD4_CTL L2
ENSG00000088035 ALG6 -176693 sc-eQTL 7.10e-01 0.0343 0.0921 0.53 CD4_CTL L2
ENSG00000116641 DOCK7 502496 sc-eQTL 7.56e-01 -0.025 0.0805 0.53 CD4_CTL L2
ENSG00000125703 ATG4C 406750 sc-eQTL 1.36e-01 -0.124 0.0829 0.53 CD4_CTL L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 1.48e-02 -0.216 0.0878 0.53 CD4_CTL L2
ENSG00000162607 USP1 754585 sc-eQTL 8.38e-01 -0.0174 0.0848 0.53 CD4_CTL L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 3.67e-01 -0.0764 0.0845 0.53 CD4_CTL L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.82e-01 0.00159 0.0711 0.53 CD4_Naive L2
ENSG00000088035 ALG6 -176693 sc-eQTL 8.74e-01 -0.0122 0.0772 0.53 CD4_Naive L2
ENSG00000116641 DOCK7 502496 sc-eQTL 3.33e-01 0.0734 0.0757 0.53 CD4_Naive L2
ENSG00000125703 ATG4C 406750 sc-eQTL 7.28e-01 0.0234 0.0671 0.53 CD4_Naive L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 4.01e-01 -0.0688 0.0819 0.53 CD4_Naive L2
ENSG00000162607 USP1 754585 sc-eQTL 2.78e-01 0.0679 0.0625 0.53 CD4_Naive L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 5.12e-01 0.0534 0.0813 0.53 CD4_Naive L2
ENSG00000079739 PGM1 -402529 sc-eQTL 8.61e-01 0.0129 0.0732 0.53 CD4_TCM L2
ENSG00000088035 ALG6 -176693 sc-eQTL 4.54e-01 0.0637 0.085 0.53 CD4_TCM L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.02e-01 -0.0394 0.0753 0.53 CD4_TCM L2
ENSG00000125703 ATG4C 406750 sc-eQTL 4.44e-01 0.0562 0.0733 0.53 CD4_TCM L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 1.61e-01 -0.121 0.0861 0.53 CD4_TCM L2
ENSG00000162607 USP1 754585 sc-eQTL 9.46e-01 0.00482 0.0709 0.53 CD4_TCM L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.99e-02 -0.146 0.0831 0.53 CD4_TCM L2
ENSG00000079739 PGM1 -402529 sc-eQTL 7.93e-01 -0.0226 0.0862 0.53 CD4_TEM L2
ENSG00000088035 ALG6 -176693 sc-eQTL 1.09e-02 0.219 0.0854 0.53 CD4_TEM L2
ENSG00000116641 DOCK7 502496 sc-eQTL 8.39e-01 0.0171 0.0845 0.53 CD4_TEM L2
ENSG00000125703 ATG4C 406750 sc-eQTL 2.07e-01 0.104 0.0818 0.53 CD4_TEM L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 5.71e-01 -0.0481 0.0846 0.53 CD4_TEM L2
ENSG00000162607 USP1 754585 sc-eQTL 4.17e-01 -0.0651 0.0801 0.53 CD4_TEM L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.19e-01 -0.0316 0.0877 0.53 CD4_TEM L2
ENSG00000079739 PGM1 -402529 sc-eQTL 6.37e-01 -0.0369 0.078 0.53 CD8_CTL L2
ENSG00000088035 ALG6 -176693 sc-eQTL 7.47e-01 -0.0268 0.083 0.53 CD8_CTL L2
ENSG00000116641 DOCK7 502496 sc-eQTL 5.20e-01 -0.0507 0.0787 0.53 CD8_CTL L2
ENSG00000125703 ATG4C 406750 sc-eQTL 5.64e-01 0.0484 0.0838 0.53 CD8_CTL L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.08e-01 0.0327 0.0871 0.53 CD8_CTL L2
ENSG00000162607 USP1 754585 sc-eQTL 9.37e-01 -0.00621 0.0781 0.53 CD8_CTL L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 8.55e-01 0.0163 0.0893 0.53 CD8_CTL L2
ENSG00000079739 PGM1 -402529 sc-eQTL 2.37e-01 -0.0948 0.0799 0.53 CD8_Naive L2
ENSG00000088035 ALG6 -176693 sc-eQTL 3.21e-01 0.0824 0.0828 0.53 CD8_Naive L2
ENSG00000116641 DOCK7 502496 sc-eQTL 7.92e-01 0.0227 0.0858 0.53 CD8_Naive L2
ENSG00000125703 ATG4C 406750 sc-eQTL 6.50e-01 0.0374 0.0823 0.53 CD8_Naive L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.02e-01 -0.0861 0.0832 0.53 CD8_Naive L2
ENSG00000162607 USP1 754585 sc-eQTL 3.82e-01 -0.0616 0.0704 0.53 CD8_Naive L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 5.66e-01 -0.0452 0.0786 0.53 CD8_Naive L2
ENSG00000079739 PGM1 -402529 sc-eQTL 8.86e-01 -0.0125 0.0871 0.53 CD8_TCM L2
ENSG00000088035 ALG6 -176693 sc-eQTL 3.34e-01 -0.0853 0.088 0.53 CD8_TCM L2
ENSG00000116641 DOCK7 502496 sc-eQTL 9.90e-01 0.00113 0.0861 0.53 CD8_TCM L2
ENSG00000125703 ATG4C 406750 sc-eQTL 9.18e-01 0.00913 0.088 0.53 CD8_TCM L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.12e-01 -0.107 0.0852 0.53 CD8_TCM L2
ENSG00000162607 USP1 754585 sc-eQTL 4.27e-01 -0.0654 0.0822 0.53 CD8_TCM L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.06e-01 -0.0329 0.0871 0.53 CD8_TCM L2
ENSG00000079739 PGM1 -402529 sc-eQTL 8.26e-01 0.0199 0.0904 0.527 CD8_TEM L2
ENSG00000088035 ALG6 -176693 sc-eQTL 4.37e-01 0.0706 0.0906 0.527 CD8_TEM L2
ENSG00000116641 DOCK7 502496 sc-eQTL 8.39e-01 -0.0179 0.088 0.527 CD8_TEM L2
ENSG00000125703 ATG4C 406750 sc-eQTL 1.79e-01 0.113 0.0842 0.527 CD8_TEM L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 8.24e-01 0.0204 0.0916 0.527 CD8_TEM L2
ENSG00000162607 USP1 754585 sc-eQTL 3.67e-01 -0.0789 0.0872 0.527 CD8_TEM L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.95e-01 0.0231 0.0888 0.527 CD8_TEM L2
ENSG00000079739 PGM1 -402529 sc-eQTL 5.53e-01 0.0497 0.0836 0.53 MAIT L2
ENSG00000088035 ALG6 -176693 sc-eQTL 3.49e-01 0.0775 0.0826 0.53 MAIT L2
ENSG00000116641 DOCK7 502496 sc-eQTL 2.15e-01 0.0984 0.079 0.53 MAIT L2
ENSG00000125703 ATG4C 406750 sc-eQTL 3.61e-01 0.0764 0.0835 0.53 MAIT L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 8.94e-01 0.0112 0.0838 0.53 MAIT L2
ENSG00000162607 USP1 754585 sc-eQTL 6.54e-01 0.0373 0.0831 0.53 MAIT L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 1.72e-02 0.204 0.0851 0.53 MAIT L2
ENSG00000079739 PGM1 -402529 sc-eQTL 6.27e-01 -0.0412 0.0846 0.531 NK_CD56bright L2
ENSG00000088035 ALG6 -176693 sc-eQTL 4.31e-01 -0.0684 0.0867 0.531 NK_CD56bright L2
ENSG00000116641 DOCK7 502496 sc-eQTL 9.15e-01 -0.00808 0.0752 0.531 NK_CD56bright L2
ENSG00000125703 ATG4C 406750 sc-eQTL 3.38e-01 0.0805 0.0838 0.531 NK_CD56bright L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.03e-01 0.0901 0.0873 0.531 NK_CD56bright L2
ENSG00000162607 USP1 754585 sc-eQTL 6.54e-02 -0.166 0.0895 0.531 NK_CD56bright L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 8.32e-01 -0.0183 0.0863 0.531 NK_CD56bright L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.65e-01 -0.00296 0.0676 0.532 NK_CD56dim L2
ENSG00000088035 ALG6 -176693 sc-eQTL 8.02e-01 -0.0215 0.0858 0.532 NK_CD56dim L2
ENSG00000116641 DOCK7 502496 sc-eQTL 4.96e-01 -0.0509 0.0746 0.532 NK_CD56dim L2
ENSG00000125703 ATG4C 406750 sc-eQTL 4.98e-01 0.0514 0.0758 0.532 NK_CD56dim L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.30e-01 0.0841 0.0861 0.532 NK_CD56dim L2
ENSG00000162607 USP1 754585 sc-eQTL 8.48e-01 0.0161 0.0837 0.532 NK_CD56dim L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 4.64e-01 0.0683 0.0931 0.532 NK_CD56dim L2
ENSG00000079739 PGM1 -402529 sc-eQTL 4.33e-02 -0.187 0.0921 0.537 NK_HLA L2
ENSG00000088035 ALG6 -176693 sc-eQTL 6.55e-01 -0.0432 0.0964 0.537 NK_HLA L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.99e-01 0.0285 0.0738 0.537 NK_HLA L2
ENSG00000125703 ATG4C 406750 sc-eQTL 6.61e-01 -0.0377 0.0858 0.537 NK_HLA L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.54e-01 -0.0283 0.0901 0.537 NK_HLA L2
ENSG00000162607 USP1 754585 sc-eQTL 6.14e-01 0.0476 0.0942 0.537 NK_HLA L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.87e-01 0.0232 0.0858 0.537 NK_HLA L2
ENSG00000079739 PGM1 -402529 sc-eQTL 6.49e-01 0.0341 0.0747 0.532 NK_cytokine L2
ENSG00000088035 ALG6 -176693 sc-eQTL 5.70e-01 -0.048 0.0844 0.532 NK_cytokine L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.02e-01 0.0408 0.0782 0.532 NK_cytokine L2
ENSG00000125703 ATG4C 406750 sc-eQTL 2.46e-01 0.0927 0.0797 0.532 NK_cytokine L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 5.78e-01 -0.0462 0.0828 0.532 NK_cytokine L2
ENSG00000162607 USP1 754585 sc-eQTL 7.13e-01 0.032 0.0871 0.532 NK_cytokine L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.10e-01 0.0328 0.0883 0.532 NK_cytokine L2
ENSG00000079739 PGM1 -402529 sc-eQTL 5.50e-01 -0.0632 0.105 0.537 PB L2
ENSG00000088035 ALG6 -176693 sc-eQTL 2.54e-01 0.126 0.11 0.537 PB L2
ENSG00000116641 DOCK7 502496 sc-eQTL 5.74e-01 -0.0667 0.118 0.537 PB L2
ENSG00000125703 ATG4C 406750 sc-eQTL 8.53e-01 0.0193 0.103 0.537 PB L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.72e-01 0.03 0.103 0.537 PB L2
ENSG00000162607 USP1 754585 sc-eQTL 3.89e-01 -0.0885 0.102 0.537 PB L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 3.51e-01 -0.106 0.113 0.537 PB L2
ENSG00000079739 PGM1 -402529 sc-eQTL 3.86e-01 -0.0688 0.0792 0.528 Pro_T L2
ENSG00000088035 ALG6 -176693 sc-eQTL 4.65e-01 0.059 0.0807 0.528 Pro_T L2
ENSG00000116641 DOCK7 502496 sc-eQTL 9.55e-01 0.00456 0.081 0.528 Pro_T L2
ENSG00000125703 ATG4C 406750 sc-eQTL 7.26e-01 0.0249 0.0709 0.528 Pro_T L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 9.08e-01 0.00826 0.0712 0.528 Pro_T L2
ENSG00000162607 USP1 754585 sc-eQTL 8.80e-01 0.00737 0.0489 0.528 Pro_T L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 7.16e-01 0.0301 0.0826 0.528 Pro_T L2
ENSG00000079739 PGM1 -402529 sc-eQTL 2.36e-01 -0.0981 0.0826 0.53 Treg L2
ENSG00000088035 ALG6 -176693 sc-eQTL 2.44e-01 -0.103 0.0883 0.53 Treg L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.02e-01 -0.0425 0.0813 0.53 Treg L2
ENSG00000125703 ATG4C 406750 sc-eQTL 7.54e-01 0.0261 0.0831 0.53 Treg L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 4.25e-01 -0.0694 0.0868 0.53 Treg L2
ENSG00000162607 USP1 754585 sc-eQTL 8.81e-02 -0.143 0.0835 0.53 Treg L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 3.60e-01 -0.0761 0.083 0.53 Treg L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.88e-01 0.00127 0.0846 0.529 cDC L2
ENSG00000088035 ALG6 -176693 sc-eQTL 5.97e-01 0.0454 0.0857 0.529 cDC L2
ENSG00000116641 DOCK7 502496 sc-eQTL 4.00e-02 -0.172 0.0832 0.529 cDC L2
ENSG00000125703 ATG4C 406750 sc-eQTL 5.13e-01 -0.0479 0.073 0.529 cDC L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.72e-01 0.0268 0.0927 0.529 cDC L2
ENSG00000162607 USP1 754585 sc-eQTL 6.27e-01 -0.0401 0.0825 0.529 cDC L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 6.95e-01 0.0292 0.0744 0.529 cDC L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.37e-01 -0.00615 0.0775 0.53 cMono_IL1B L2
ENSG00000088035 ALG6 -176693 sc-eQTL 2.71e-01 0.0853 0.0774 0.53 cMono_IL1B L2
ENSG00000116641 DOCK7 502496 sc-eQTL 4.04e-01 -0.0683 0.0817 0.53 cMono_IL1B L2
ENSG00000125703 ATG4C 406750 sc-eQTL 2.87e-01 0.0613 0.0574 0.53 cMono_IL1B L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 9.81e-01 0.00199 0.0815 0.53 cMono_IL1B L2
ENSG00000162607 USP1 754585 sc-eQTL 7.78e-01 -0.0203 0.0719 0.53 cMono_IL1B L2
ENSG00000240563 L1TD1 996033 sc-eQTL 4.39e-01 -0.056 0.0721 0.53 cMono_IL1B L2
ENSG00000079739 PGM1 -402529 sc-eQTL 7.16e-01 0.0313 0.086 0.53 cMono_S100A L2
ENSG00000088035 ALG6 -176693 sc-eQTL 1.32e-02 0.215 0.0859 0.53 cMono_S100A L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.35e-01 -0.0384 0.0808 0.53 cMono_S100A L2
ENSG00000125703 ATG4C 406750 sc-eQTL 1.74e-01 -0.095 0.0697 0.53 cMono_S100A L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.30e-02 -0.179 0.078 0.53 cMono_S100A L2
ENSG00000162607 USP1 754585 sc-eQTL 2.59e-01 -0.0917 0.081 0.53 cMono_S100A L2
ENSG00000240563 L1TD1 996033 sc-eQTL 3.62e-01 0.0617 0.0675 0.53 cMono_S100A L2
ENSG00000079739 PGM1 -402529 sc-eQTL 6.74e-01 -0.0396 0.0938 0.527 gdT L2
ENSG00000088035 ALG6 -176693 sc-eQTL 5.77e-02 0.189 0.0988 0.527 gdT L2
ENSG00000116641 DOCK7 502496 sc-eQTL 6.56e-01 0.0438 0.0981 0.527 gdT L2
ENSG00000125703 ATG4C 406750 sc-eQTL 1.22e-02 0.233 0.0917 0.527 gdT L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 7.06e-01 0.0377 0.0995 0.527 gdT L2
ENSG00000162607 USP1 754585 sc-eQTL 4.06e-01 -0.0784 0.094 0.527 gdT L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 1.11e-01 -0.156 0.0971 0.527 gdT L2
ENSG00000079739 PGM1 -402529 sc-eQTL 9.05e-01 -0.0103 0.0864 0.533 intMono L2
ENSG00000088035 ALG6 -176693 sc-eQTL 1.00e+00 4.25e-05 0.0804 0.533 intMono L2
ENSG00000116641 DOCK7 502496 sc-eQTL 8.65e-01 0.014 0.0821 0.533 intMono L2
ENSG00000125703 ATG4C 406750 sc-eQTL 3.14e-01 -0.079 0.0782 0.533 intMono L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 4.53e-01 -0.0649 0.0863 0.533 intMono L2
ENSG00000162607 USP1 754585 sc-eQTL 1.72e-01 -0.12 0.0874 0.533 intMono L2
ENSG00000240563 L1TD1 996033 sc-eQTL 4.62e-01 -0.0476 0.0645 0.533 intMono L2
ENSG00000079739 PGM1 -402529 sc-eQTL 2.84e-01 -0.0839 0.0781 0.525 ncMono L2
ENSG00000088035 ALG6 -176693 sc-eQTL 4.91e-01 0.0593 0.0859 0.525 ncMono L2
ENSG00000116641 DOCK7 502496 sc-eQTL 1.75e-01 -0.115 0.0843 0.525 ncMono L2
ENSG00000125703 ATG4C 406750 sc-eQTL 9.74e-01 -0.00256 0.0791 0.525 ncMono L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 8.68e-01 -0.0138 0.0827 0.525 ncMono L2
ENSG00000162607 USP1 754585 sc-eQTL 7.76e-02 0.149 0.0839 0.525 ncMono L2
ENSG00000240563 L1TD1 996033 sc-eQTL 6.07e-01 -0.0308 0.0599 0.525 ncMono L2
ENSG00000079739 PGM1 -402529 sc-eQTL 2.98e-01 0.0995 0.0954 0.503 pDC L2
ENSG00000088035 ALG6 -176693 sc-eQTL 9.77e-01 -0.00265 0.0932 0.503 pDC L2
ENSG00000116641 DOCK7 502496 sc-eQTL 7.90e-01 0.0254 0.0952 0.503 pDC L2
ENSG00000125703 ATG4C 406750 sc-eQTL 8.02e-01 -0.0214 0.0854 0.503 pDC L2
ENSG00000142856 ITGB3BP -402839 sc-eQTL 5.44e-01 0.0583 0.0957 0.503 pDC L2
ENSG00000162607 USP1 754585 sc-eQTL 7.18e-01 -0.0354 0.0977 0.503 pDC L2
ENSG00000203965 EFCAB7 -332490 sc-eQTL 6.29e-02 -0.157 0.0839 0.503 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -402529 sc-eQTL 2.74e-01 -0.0908 0.0828 0.53 B_Memory LOneK1K
ENSG00000088035 ALG6 -176693 sc-eQTL 1.09e-01 0.147 0.0912 0.53 B_Memory LOneK1K
ENSG00000116641 DOCK7 502496 sc-eQTL 4.26e-01 0.0634 0.0795 0.53 B_Memory LOneK1K
ENSG00000125703 ATG4C 406750 sc-eQTL 1.51e-01 -0.0924 0.0641 0.53 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -402839 sc-eQTL 3.57e-01 -0.078 0.0844 0.53 B_Memory LOneK1K
ENSG00000162607 USP1 754585 sc-eQTL 7.95e-02 0.144 0.0816 0.53 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -332490 sc-eQTL 4.99e-01 -0.0596 0.0881 0.53 B_Memory LOneK1K
ENSG00000079739 PGM1 -402529 sc-eQTL 7.27e-01 0.0298 0.0853 0.53 B_Naive LOneK1K
ENSG00000088035 ALG6 -176693 sc-eQTL 1.55e-02 0.211 0.0867 0.53 B_Naive LOneK1K
ENSG00000116641 DOCK7 502496 sc-eQTL 5.74e-01 -0.0462 0.082 0.53 B_Naive LOneK1K
ENSG00000125703 ATG4C 406750 sc-eQTL 1.61e-01 0.0878 0.0623 0.53 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -402839 sc-eQTL 5.09e-01 -0.0585 0.0884 0.53 B_Naive LOneK1K
ENSG00000162607 USP1 754585 sc-eQTL 8.90e-01 -0.0105 0.076 0.53 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -332490 sc-eQTL 1.28e-01 -0.135 0.0885 0.53 B_Naive LOneK1K
ENSG00000079739 PGM1 -402529 sc-eQTL 8.57e-01 0.0143 0.0794 0.53 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -176693 sc-eQTL 1.59e-02 0.184 0.0758 0.53 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 502496 sc-eQTL 3.69e-01 -0.0696 0.0773 0.53 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 406750 sc-eQTL 9.10e-01 -0.00604 0.0535 0.53 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -402839 sc-eQTL 2.25e-01 -0.096 0.0789 0.53 CD14_Mono LOneK1K
ENSG00000162607 USP1 754585 sc-eQTL 3.48e-01 -0.0634 0.0675 0.53 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 996033 sc-eQTL 8.92e-01 -0.00993 0.0733 0.53 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -402529 sc-eQTL 2.51e-01 -0.0856 0.0744 0.53 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -176693 sc-eQTL 5.61e-01 0.0492 0.0847 0.53 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 502496 sc-eQTL 4.49e-01 -0.0635 0.0837 0.53 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 406750 sc-eQTL 4.68e-01 -0.052 0.0714 0.53 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -402839 sc-eQTL 4.55e-01 -0.062 0.0829 0.53 CD16_Mono LOneK1K
ENSG00000162607 USP1 754585 sc-eQTL 5.80e-01 0.0432 0.0779 0.53 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 996033 sc-eQTL 8.85e-01 -0.00773 0.0532 0.53 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -402529 sc-eQTL 2.07e-01 -0.0837 0.0662 0.532 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -176693 sc-eQTL 6.43e-01 -0.037 0.0797 0.532 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 502496 sc-eQTL 6.16e-01 -0.0359 0.0714 0.532 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 406750 sc-eQTL 5.91e-01 0.0383 0.0713 0.532 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -402839 sc-eQTL 4.81e-01 0.0596 0.0844 0.532 NK_CD56dim LOneK1K
ENSG00000162607 USP1 754585 sc-eQTL 8.72e-01 0.0124 0.0767 0.532 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -332490 sc-eQTL 8.15e-01 0.0219 0.0933 0.532 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -402529 eQTL 0.101 0.03 0.0183 0.00118 0.0 0.449
ENSG00000088035 ALG6 -176693 eQTL 0.109 -0.0218 0.0136 0.00101 0.0 0.449

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -356200 1.25e-06 9.44e-07 2.95e-07 3.5e-07 1.81e-07 4.06e-07 8.96e-07 3.2e-07 1.11e-06 3.24e-07 1.24e-06 5.73e-07 1.54e-06 2.4e-07 4.3e-07 5.29e-07 7.66e-07 5.33e-07 3.77e-07 4.32e-07 2.83e-07 8.58e-07 6.11e-07 4.83e-07 1.71e-06 2.44e-07 5.56e-07 5.29e-07 8.24e-07 1.01e-06 5.1e-07 6.15e-08 1.73e-07 3.55e-07 3.67e-07 3.32e-07 3.26e-07 1.55e-07 1.5e-07 1.98e-08 2.37e-07 1.19e-06 6.87e-08 1.95e-08 1.93e-07 7.16e-08 1.7e-07 8.51e-08 5.77e-08