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Genes within 1Mb (chr1:63184885:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -408526 sc-eQTL 7.34e-02 -0.136 0.0753 0.442 B L1
ENSG00000088035 ALG6 -182690 sc-eQTL 1.19e-02 0.197 0.0775 0.442 B L1
ENSG00000116641 DOCK7 496499 sc-eQTL 5.12e-01 0.0516 0.0786 0.442 B L1
ENSG00000125703 ATG4C 400753 sc-eQTL 5.31e-01 0.0343 0.0546 0.442 B L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 6.31e-02 -0.161 0.0863 0.442 B L1
ENSG00000162607 USP1 748588 sc-eQTL 5.39e-01 -0.0464 0.0754 0.442 B L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 1.16e-02 -0.224 0.0878 0.442 B L1
ENSG00000079739 PGM1 -408526 sc-eQTL 8.24e-01 -0.0149 0.0669 0.442 CD4T L1
ENSG00000088035 ALG6 -182690 sc-eQTL 8.98e-01 0.00945 0.0738 0.442 CD4T L1
ENSG00000116641 DOCK7 496499 sc-eQTL 6.70e-01 -0.0318 0.0747 0.442 CD4T L1
ENSG00000125703 ATG4C 400753 sc-eQTL 3.71e-01 -0.054 0.0602 0.442 CD4T L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 5.08e-03 -0.238 0.0841 0.442 CD4T L1
ENSG00000162607 USP1 748588 sc-eQTL 6.95e-01 0.023 0.0585 0.442 CD4T L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 4.25e-01 -0.0614 0.0768 0.442 CD4T L1
ENSG00000079739 PGM1 -408526 sc-eQTL 4.11e-01 -0.0598 0.0726 0.442 CD8T L1
ENSG00000088035 ALG6 -182690 sc-eQTL 6.06e-01 -0.0414 0.0801 0.442 CD8T L1
ENSG00000116641 DOCK7 496499 sc-eQTL 7.08e-01 -0.0304 0.0811 0.442 CD8T L1
ENSG00000125703 ATG4C 400753 sc-eQTL 1.89e-01 0.101 0.0768 0.442 CD8T L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 5.15e-01 -0.0562 0.0861 0.442 CD8T L1
ENSG00000162607 USP1 748588 sc-eQTL 2.39e-01 -0.0791 0.067 0.442 CD8T L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 9.03e-02 -0.145 0.0854 0.442 CD8T L1
ENSG00000079739 PGM1 -408526 sc-eQTL 2.53e-01 -0.0893 0.0779 0.441 DC L1
ENSG00000088035 ALG6 -182690 sc-eQTL 8.59e-01 0.0144 0.0806 0.441 DC L1
ENSG00000116641 DOCK7 496499 sc-eQTL 2.16e-01 -0.102 0.0823 0.441 DC L1
ENSG00000125703 ATG4C 400753 sc-eQTL 7.88e-02 -0.113 0.0642 0.441 DC L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.69e-01 0.0035 0.0904 0.441 DC L1
ENSG00000162607 USP1 748588 sc-eQTL 8.78e-02 -0.134 0.0783 0.441 DC L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 1.99e-01 -0.101 0.0783 0.441 DC L1
ENSG00000079739 PGM1 -408526 sc-eQTL 8.91e-01 -0.0107 0.0776 0.442 Mono L1
ENSG00000088035 ALG6 -182690 sc-eQTL 1.76e-03 0.251 0.0792 0.442 Mono L1
ENSG00000116641 DOCK7 496499 sc-eQTL 3.20e-01 -0.0779 0.0782 0.442 Mono L1
ENSG00000125703 ATG4C 400753 sc-eQTL 7.31e-01 -0.0182 0.0529 0.442 Mono L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.08e-02 -0.212 0.0824 0.442 Mono L1
ENSG00000162607 USP1 748588 sc-eQTL 7.43e-01 -0.0226 0.0687 0.442 Mono L1
ENSG00000240563 L1TD1 990036 sc-eQTL 6.68e-01 -0.0275 0.0641 0.442 Mono L1
ENSG00000079739 PGM1 -408526 sc-eQTL 5.56e-01 -0.0401 0.068 0.442 NK L1
ENSG00000088035 ALG6 -182690 sc-eQTL 6.92e-01 -0.0316 0.0797 0.442 NK L1
ENSG00000116641 DOCK7 496499 sc-eQTL 9.19e-01 -0.00666 0.0657 0.442 NK L1
ENSG00000125703 ATG4C 400753 sc-eQTL 6.86e-01 -0.0286 0.0705 0.442 NK L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 8.15e-01 -0.0206 0.0877 0.442 NK L1
ENSG00000162607 USP1 748588 sc-eQTL 4.13e-01 -0.0641 0.0782 0.442 NK L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 8.69e-01 -0.0158 0.0952 0.442 NK L1
ENSG00000079739 PGM1 -408526 sc-eQTL 5.30e-01 -0.049 0.0779 0.442 Other_T L1
ENSG00000088035 ALG6 -182690 sc-eQTL 3.36e-01 0.0753 0.0781 0.442 Other_T L1
ENSG00000116641 DOCK7 496499 sc-eQTL 2.75e-01 0.0872 0.0797 0.442 Other_T L1
ENSG00000125703 ATG4C 400753 sc-eQTL 4.27e-01 0.055 0.0691 0.442 Other_T L1
ENSG00000142856 ITGB3BP -408836 sc-eQTL 2.24e-01 0.0746 0.0611 0.442 Other_T L1
ENSG00000162607 USP1 748588 sc-eQTL 7.09e-01 -0.0199 0.0532 0.442 Other_T L1
ENSG00000203965 EFCAB7 -338487 sc-eQTL 4.13e-01 0.0775 0.0945 0.442 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -408526 sc-eQTL 4.04e-01 -0.0842 0.101 0.436 B_Activated L2
ENSG00000088035 ALG6 -182690 sc-eQTL 4.63e-01 -0.071 0.0965 0.436 B_Activated L2
ENSG00000116641 DOCK7 496499 sc-eQTL 5.03e-01 -0.0602 0.0898 0.436 B_Activated L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.84e-01 -0.101 0.0943 0.436 B_Activated L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 2.06e-03 -0.281 0.0899 0.436 B_Activated L2
ENSG00000162607 USP1 748588 sc-eQTL 7.03e-01 -0.0382 0.1 0.436 B_Activated L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 8.28e-01 -0.019 0.0875 0.436 B_Activated L2
ENSG00000079739 PGM1 -408526 sc-eQTL 1.90e-01 -0.12 0.0915 0.44 B_Intermediate L2
ENSG00000088035 ALG6 -182690 sc-eQTL 4.71e-01 0.0673 0.0932 0.44 B_Intermediate L2
ENSG00000116641 DOCK7 496499 sc-eQTL 3.90e-01 0.0766 0.089 0.44 B_Intermediate L2
ENSG00000125703 ATG4C 400753 sc-eQTL 6.13e-01 -0.0382 0.0754 0.44 B_Intermediate L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.35e-01 -0.00737 0.0899 0.44 B_Intermediate L2
ENSG00000162607 USP1 748588 sc-eQTL 9.57e-01 -0.0049 0.0897 0.44 B_Intermediate L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 2.99e-01 -0.0924 0.0888 0.44 B_Intermediate L2
ENSG00000079739 PGM1 -408526 sc-eQTL 4.86e-01 -0.0633 0.0907 0.444 B_Memory L2
ENSG00000088035 ALG6 -182690 sc-eQTL 4.62e-02 0.183 0.0914 0.444 B_Memory L2
ENSG00000116641 DOCK7 496499 sc-eQTL 6.02e-01 0.0451 0.0865 0.444 B_Memory L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.43e-01 0.00591 0.0823 0.444 B_Memory L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.14e-02 -0.202 0.0931 0.444 B_Memory L2
ENSG00000162607 USP1 748588 sc-eQTL 3.74e-01 0.0844 0.0948 0.444 B_Memory L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 8.00e-01 -0.0237 0.0934 0.444 B_Memory L2
ENSG00000079739 PGM1 -408526 sc-eQTL 8.12e-01 -0.0218 0.0913 0.442 B_Naive1 L2
ENSG00000088035 ALG6 -182690 sc-eQTL 5.84e-02 0.173 0.0909 0.442 B_Naive1 L2
ENSG00000116641 DOCK7 496499 sc-eQTL 8.29e-01 -0.019 0.0879 0.442 B_Naive1 L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.65e-01 -0.00296 0.0677 0.442 B_Naive1 L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.27e-02 -0.151 0.0892 0.442 B_Naive1 L2
ENSG00000162607 USP1 748588 sc-eQTL 9.01e-01 -0.0098 0.0789 0.442 B_Naive1 L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 7.67e-03 -0.254 0.0942 0.442 B_Naive1 L2
ENSG00000079739 PGM1 -408526 sc-eQTL 3.30e-01 -0.0873 0.0894 0.444 B_Naive2 L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.53e-01 0.107 0.0931 0.444 B_Naive2 L2
ENSG00000116641 DOCK7 496499 sc-eQTL 6.67e-01 0.0387 0.0898 0.444 B_Naive2 L2
ENSG00000125703 ATG4C 400753 sc-eQTL 4.66e-01 0.0631 0.0863 0.444 B_Naive2 L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.67e-01 -0.129 0.0933 0.444 B_Naive2 L2
ENSG00000162607 USP1 748588 sc-eQTL 4.31e-02 -0.18 0.0884 0.444 B_Naive2 L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 5.91e-01 0.0502 0.0932 0.444 B_Naive2 L2
ENSG00000079739 PGM1 -408526 sc-eQTL 8.86e-01 0.013 0.0905 0.441 CD4_CTL L2
ENSG00000088035 ALG6 -182690 sc-eQTL 8.06e-01 -0.0235 0.0957 0.441 CD4_CTL L2
ENSG00000116641 DOCK7 496499 sc-eQTL 7.40e-01 -0.0278 0.0837 0.441 CD4_CTL L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.42e-02 -0.194 0.0855 0.441 CD4_CTL L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.07e-01 -0.149 0.092 0.441 CD4_CTL L2
ENSG00000162607 USP1 748588 sc-eQTL 8.06e-02 -0.154 0.0874 0.441 CD4_CTL L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 9.06e-01 -0.0104 0.088 0.441 CD4_CTL L2
ENSG00000079739 PGM1 -408526 sc-eQTL 8.96e-01 -0.00978 0.0747 0.442 CD4_Naive L2
ENSG00000088035 ALG6 -182690 sc-eQTL 6.80e-01 -0.0336 0.0812 0.442 CD4_Naive L2
ENSG00000116641 DOCK7 496499 sc-eQTL 9.62e-01 0.00382 0.0798 0.442 CD4_Naive L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.55e-01 -0.00403 0.0705 0.442 CD4_Naive L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.09e-02 -0.185 0.0853 0.442 CD4_Naive L2
ENSG00000162607 USP1 748588 sc-eQTL 2.14e-01 0.0818 0.0656 0.442 CD4_Naive L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 7.44e-01 0.028 0.0856 0.442 CD4_Naive L2
ENSG00000079739 PGM1 -408526 sc-eQTL 8.41e-01 0.0156 0.0772 0.442 CD4_TCM L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.24e-01 0.109 0.0894 0.442 CD4_TCM L2
ENSG00000116641 DOCK7 496499 sc-eQTL 5.94e-01 -0.0424 0.0794 0.442 CD4_TCM L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.43e-01 0.00554 0.0774 0.442 CD4_TCM L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.46e-02 -0.221 0.09 0.442 CD4_TCM L2
ENSG00000162607 USP1 748588 sc-eQTL 2.78e-01 -0.0811 0.0746 0.442 CD4_TCM L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 4.51e-03 -0.249 0.0866 0.442 CD4_TCM L2
ENSG00000079739 PGM1 -408526 sc-eQTL 5.47e-01 -0.0546 0.0904 0.442 CD4_TEM L2
ENSG00000088035 ALG6 -182690 sc-eQTL 1.58e-02 0.218 0.0897 0.442 CD4_TEM L2
ENSG00000116641 DOCK7 496499 sc-eQTL 8.43e-01 0.0176 0.0887 0.442 CD4_TEM L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.21e-01 0.105 0.0858 0.442 CD4_TEM L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.76e-01 -0.12 0.0885 0.442 CD4_TEM L2
ENSG00000162607 USP1 748588 sc-eQTL 4.40e-01 -0.0651 0.0841 0.442 CD4_TEM L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 8.60e-01 0.0163 0.0921 0.442 CD4_TEM L2
ENSG00000079739 PGM1 -408526 sc-eQTL 3.80e-01 -0.0722 0.082 0.442 CD8_CTL L2
ENSG00000088035 ALG6 -182690 sc-eQTL 6.46e-01 -0.0401 0.0873 0.442 CD8_CTL L2
ENSG00000116641 DOCK7 496499 sc-eQTL 7.52e-01 0.0262 0.0829 0.442 CD8_CTL L2
ENSG00000125703 ATG4C 400753 sc-eQTL 7.39e-01 0.0294 0.0882 0.442 CD8_CTL L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 7.56e-01 0.0285 0.0917 0.442 CD8_CTL L2
ENSG00000162607 USP1 748588 sc-eQTL 6.77e-01 0.0342 0.0822 0.442 CD8_CTL L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 9.93e-01 0.000817 0.094 0.442 CD8_CTL L2
ENSG00000079739 PGM1 -408526 sc-eQTL 3.76e-01 -0.0745 0.0839 0.442 CD8_Naive L2
ENSG00000088035 ALG6 -182690 sc-eQTL 5.89e-01 0.0471 0.0869 0.442 CD8_Naive L2
ENSG00000116641 DOCK7 496499 sc-eQTL 6.19e-01 -0.0447 0.0899 0.442 CD8_Naive L2
ENSG00000125703 ATG4C 400753 sc-eQTL 7.94e-01 -0.0225 0.0863 0.442 CD8_Naive L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.33e-01 -0.131 0.087 0.442 CD8_Naive L2
ENSG00000162607 USP1 748588 sc-eQTL 1.78e-01 -0.0994 0.0736 0.442 CD8_Naive L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 1.40e-01 -0.122 0.082 0.442 CD8_Naive L2
ENSG00000079739 PGM1 -408526 sc-eQTL 1.00e+00 -2.27e-05 0.091 0.442 CD8_TCM L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.20e-01 -0.113 0.0918 0.442 CD8_TCM L2
ENSG00000116641 DOCK7 496499 sc-eQTL 9.44e-02 0.15 0.0893 0.442 CD8_TCM L2
ENSG00000125703 ATG4C 400753 sc-eQTL 6.25e-01 0.0451 0.0919 0.442 CD8_TCM L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.11e-01 -0.142 0.0888 0.442 CD8_TCM L2
ENSG00000162607 USP1 748588 sc-eQTL 1.40e-01 -0.127 0.0855 0.442 CD8_TCM L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 4.47e-01 -0.0693 0.091 0.442 CD8_TCM L2
ENSG00000079739 PGM1 -408526 sc-eQTL 2.67e-01 -0.104 0.0929 0.441 CD8_TEM L2
ENSG00000088035 ALG6 -182690 sc-eQTL 5.36e-01 0.058 0.0934 0.441 CD8_TEM L2
ENSG00000116641 DOCK7 496499 sc-eQTL 8.85e-01 -0.0131 0.0907 0.441 CD8_TEM L2
ENSG00000125703 ATG4C 400753 sc-eQTL 3.63e-01 0.0794 0.087 0.441 CD8_TEM L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.58e-01 0.0867 0.0942 0.441 CD8_TEM L2
ENSG00000162607 USP1 748588 sc-eQTL 6.25e-01 -0.0441 0.09 0.441 CD8_TEM L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 3.58e-01 0.0841 0.0913 0.441 CD8_TEM L2
ENSG00000079739 PGM1 -408526 sc-eQTL 8.80e-01 -0.0134 0.0886 0.442 MAIT L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.27e-01 0.106 0.0874 0.442 MAIT L2
ENSG00000116641 DOCK7 496499 sc-eQTL 4.49e-01 0.0636 0.0839 0.442 MAIT L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.00e-01 0.0112 0.0886 0.442 MAIT L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.43e-01 -0.00638 0.0887 0.442 MAIT L2
ENSG00000162607 USP1 748588 sc-eQTL 9.17e-01 -0.00917 0.0881 0.442 MAIT L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 1.40e-02 0.223 0.0901 0.442 MAIT L2
ENSG00000079739 PGM1 -408526 sc-eQTL 4.25e-01 -0.0706 0.0884 0.447 NK_CD56bright L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.66e-01 -0.101 0.0904 0.447 NK_CD56bright L2
ENSG00000116641 DOCK7 496499 sc-eQTL 7.84e-01 -0.0215 0.0786 0.447 NK_CD56bright L2
ENSG00000125703 ATG4C 400753 sc-eQTL 3.54e-01 0.0815 0.0876 0.447 NK_CD56bright L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 6.33e-01 0.0437 0.0914 0.447 NK_CD56bright L2
ENSG00000162607 USP1 748588 sc-eQTL 7.59e-02 -0.167 0.0936 0.447 NK_CD56bright L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 5.69e-01 -0.0514 0.0901 0.447 NK_CD56bright L2
ENSG00000079739 PGM1 -408526 sc-eQTL 4.30e-01 0.0553 0.0699 0.444 NK_CD56dim L2
ENSG00000088035 ALG6 -182690 sc-eQTL 9.64e-01 0.00402 0.0888 0.444 NK_CD56dim L2
ENSG00000116641 DOCK7 496499 sc-eQTL 5.98e-01 -0.0408 0.0772 0.444 NK_CD56dim L2
ENSG00000125703 ATG4C 400753 sc-eQTL 4.50e-01 0.0594 0.0784 0.444 NK_CD56dim L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 8.94e-01 -0.0119 0.0893 0.444 NK_CD56dim L2
ENSG00000162607 USP1 748588 sc-eQTL 9.19e-01 -0.00883 0.0866 0.444 NK_CD56dim L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 1.00e+00 4.99e-05 0.0965 0.444 NK_CD56dim L2
ENSG00000079739 PGM1 -408526 sc-eQTL 5.82e-02 -0.185 0.0969 0.45 NK_HLA L2
ENSG00000088035 ALG6 -182690 sc-eQTL 6.74e-01 -0.0426 0.101 0.45 NK_HLA L2
ENSG00000116641 DOCK7 496499 sc-eQTL 4.72e-01 0.0558 0.0774 0.45 NK_HLA L2
ENSG00000125703 ATG4C 400753 sc-eQTL 3.17e-01 -0.0902 0.0899 0.45 NK_HLA L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 6.55e-01 -0.0423 0.0946 0.45 NK_HLA L2
ENSG00000162607 USP1 748588 sc-eQTL 9.94e-01 -0.000722 0.099 0.45 NK_HLA L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 8.10e-01 0.0217 0.0901 0.45 NK_HLA L2
ENSG00000079739 PGM1 -408526 sc-eQTL 9.81e-01 -0.00182 0.0767 0.444 NK_cytokine L2
ENSG00000088035 ALG6 -182690 sc-eQTL 8.41e-01 0.0174 0.0867 0.444 NK_cytokine L2
ENSG00000116641 DOCK7 496499 sc-eQTL 7.76e-02 0.141 0.0797 0.444 NK_cytokine L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.30e-01 0.00726 0.0822 0.444 NK_cytokine L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.08e-02 -0.144 0.0845 0.444 NK_cytokine L2
ENSG00000162607 USP1 748588 sc-eQTL 9.18e-01 0.00926 0.0895 0.444 NK_cytokine L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 9.99e-01 -0.000133 0.0907 0.444 NK_cytokine L2
ENSG00000079739 PGM1 -408526 sc-eQTL 5.33e-01 -0.0667 0.107 0.448 PB L2
ENSG00000088035 ALG6 -182690 sc-eQTL 1.34e-01 0.168 0.111 0.448 PB L2
ENSG00000116641 DOCK7 496499 sc-eQTL 3.20e-01 -0.119 0.12 0.448 PB L2
ENSG00000125703 ATG4C 400753 sc-eQTL 6.27e-01 0.051 0.105 0.448 PB L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 5.39e-01 0.0643 0.104 0.448 PB L2
ENSG00000162607 USP1 748588 sc-eQTL 5.83e-01 -0.0573 0.104 0.448 PB L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 6.21e-01 -0.0569 0.115 0.448 PB L2
ENSG00000079739 PGM1 -408526 sc-eQTL 7.53e-01 -0.026 0.0824 0.439 Pro_T L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.42e-01 0.098 0.0835 0.439 Pro_T L2
ENSG00000116641 DOCK7 496499 sc-eQTL 9.81e-01 0.00198 0.0841 0.439 Pro_T L2
ENSG00000125703 ATG4C 400753 sc-eQTL 9.98e-01 -0.000145 0.0736 0.439 Pro_T L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.40e-01 -0.00554 0.0739 0.439 Pro_T L2
ENSG00000162607 USP1 748588 sc-eQTL 5.77e-01 0.0283 0.0507 0.439 Pro_T L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 9.43e-01 -0.00619 0.0858 0.439 Pro_T L2
ENSG00000079739 PGM1 -408526 sc-eQTL 2.97e-01 -0.0899 0.086 0.442 Treg L2
ENSG00000088035 ALG6 -182690 sc-eQTL 4.92e-01 -0.0633 0.0921 0.442 Treg L2
ENSG00000116641 DOCK7 496499 sc-eQTL 9.10e-01 0.00956 0.0846 0.442 Treg L2
ENSG00000125703 ATG4C 400753 sc-eQTL 3.97e-01 0.0733 0.0863 0.442 Treg L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 2.15e-01 -0.112 0.0902 0.442 Treg L2
ENSG00000162607 USP1 748588 sc-eQTL 6.96e-01 -0.0342 0.0875 0.442 Treg L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 2.25e-01 -0.105 0.0863 0.442 Treg L2
ENSG00000079739 PGM1 -408526 sc-eQTL 6.38e-01 -0.0414 0.0879 0.446 cDC L2
ENSG00000088035 ALG6 -182690 sc-eQTL 1.11e-01 -0.142 0.0886 0.446 cDC L2
ENSG00000116641 DOCK7 496499 sc-eQTL 3.79e-02 -0.181 0.0865 0.446 cDC L2
ENSG00000125703 ATG4C 400753 sc-eQTL 7.62e-01 -0.0231 0.076 0.446 cDC L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 9.21e-01 0.00953 0.0963 0.446 cDC L2
ENSG00000162607 USP1 748588 sc-eQTL 3.24e-01 -0.0846 0.0855 0.446 cDC L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 7.84e-01 -0.0212 0.0774 0.446 cDC L2
ENSG00000079739 PGM1 -408526 sc-eQTL 9.61e-01 0.00394 0.081 0.442 cMono_IL1B L2
ENSG00000088035 ALG6 -182690 sc-eQTL 4.13e-02 0.165 0.0803 0.442 cMono_IL1B L2
ENSG00000116641 DOCK7 496499 sc-eQTL 7.74e-01 -0.0246 0.0855 0.442 cMono_IL1B L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.51e-01 0.069 0.0599 0.442 cMono_IL1B L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.55e-01 -0.0788 0.085 0.442 cMono_IL1B L2
ENSG00000162607 USP1 748588 sc-eQTL 4.62e-01 -0.0553 0.075 0.442 cMono_IL1B L2
ENSG00000240563 L1TD1 990036 sc-eQTL 2.46e-01 -0.0875 0.0752 0.442 cMono_IL1B L2
ENSG00000079739 PGM1 -408526 sc-eQTL 9.51e-01 0.00553 0.0892 0.442 cMono_S100A L2
ENSG00000088035 ALG6 -182690 sc-eQTL 1.06e-02 0.23 0.089 0.442 cMono_S100A L2
ENSG00000116641 DOCK7 496499 sc-eQTL 8.80e-01 0.0127 0.0838 0.442 cMono_S100A L2
ENSG00000125703 ATG4C 400753 sc-eQTL 5.49e-02 -0.139 0.0719 0.442 cMono_S100A L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.07e-02 -0.208 0.0806 0.442 cMono_S100A L2
ENSG00000162607 USP1 748588 sc-eQTL 5.37e-01 -0.0521 0.0842 0.442 cMono_S100A L2
ENSG00000240563 L1TD1 990036 sc-eQTL 9.13e-01 0.00765 0.0701 0.442 cMono_S100A L2
ENSG00000079739 PGM1 -408526 sc-eQTL 3.11e-01 -0.0993 0.0976 0.436 gdT L2
ENSG00000088035 ALG6 -182690 sc-eQTL 7.19e-01 0.0377 0.104 0.436 gdT L2
ENSG00000116641 DOCK7 496499 sc-eQTL 1.49e-01 0.148 0.102 0.436 gdT L2
ENSG00000125703 ATG4C 400753 sc-eQTL 1.11e-01 0.156 0.097 0.436 gdT L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 1.21e-01 0.161 0.103 0.436 gdT L2
ENSG00000162607 USP1 748588 sc-eQTL 6.52e-01 -0.0444 0.0983 0.436 gdT L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 5.35e-01 -0.0635 0.102 0.436 gdT L2
ENSG00000079739 PGM1 -408526 sc-eQTL 2.52e-01 -0.103 0.0896 0.444 intMono L2
ENSG00000088035 ALG6 -182690 sc-eQTL 9.88e-01 -0.00122 0.0837 0.444 intMono L2
ENSG00000116641 DOCK7 496499 sc-eQTL 9.91e-01 -0.001 0.0855 0.444 intMono L2
ENSG00000125703 ATG4C 400753 sc-eQTL 7.72e-01 -0.0236 0.0816 0.444 intMono L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.62e-01 -0.0819 0.0897 0.444 intMono L2
ENSG00000162607 USP1 748588 sc-eQTL 2.21e-01 -0.112 0.0911 0.444 intMono L2
ENSG00000240563 L1TD1 990036 sc-eQTL 7.37e-01 0.0226 0.0672 0.444 intMono L2
ENSG00000079739 PGM1 -408526 sc-eQTL 2.98e-01 -0.0845 0.081 0.443 ncMono L2
ENSG00000088035 ALG6 -182690 sc-eQTL 2.90e-01 0.0944 0.089 0.443 ncMono L2
ENSG00000116641 DOCK7 496499 sc-eQTL 3.03e-01 -0.0905 0.0876 0.443 ncMono L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.68e-01 0.0907 0.0818 0.443 ncMono L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 4.47e-01 -0.0652 0.0857 0.443 ncMono L2
ENSG00000162607 USP1 748588 sc-eQTL 1.83e-01 0.117 0.0873 0.443 ncMono L2
ENSG00000240563 L1TD1 990036 sc-eQTL 4.04e-01 -0.0519 0.0621 0.443 ncMono L2
ENSG00000079739 PGM1 -408526 sc-eQTL 6.78e-01 0.042 0.101 0.415 pDC L2
ENSG00000088035 ALG6 -182690 sc-eQTL 5.92e-01 0.0527 0.0982 0.415 pDC L2
ENSG00000116641 DOCK7 496499 sc-eQTL 8.77e-01 0.0156 0.1 0.415 pDC L2
ENSG00000125703 ATG4C 400753 sc-eQTL 2.16e-01 -0.111 0.0896 0.415 pDC L2
ENSG00000142856 ITGB3BP -408836 sc-eQTL 8.80e-01 -0.0152 0.101 0.415 pDC L2
ENSG00000162607 USP1 748588 sc-eQTL 7.29e-01 0.0357 0.103 0.415 pDC L2
ENSG00000203965 EFCAB7 -338487 sc-eQTL 7.79e-02 -0.157 0.0886 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -408526 sc-eQTL 4.27e-02 -0.173 0.0851 0.442 B_Memory LOneK1K
ENSG00000088035 ALG6 -182690 sc-eQTL 2.44e-01 0.111 0.0947 0.442 B_Memory LOneK1K
ENSG00000116641 DOCK7 496499 sc-eQTL 4.56e-01 0.0615 0.0823 0.442 B_Memory LOneK1K
ENSG00000125703 ATG4C 400753 sc-eQTL 2.60e-01 -0.075 0.0665 0.442 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -408836 sc-eQTL 8.24e-02 -0.152 0.087 0.442 B_Memory LOneK1K
ENSG00000162607 USP1 748588 sc-eQTL 4.66e-01 0.062 0.0849 0.442 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -338487 sc-eQTL 5.27e-01 -0.0578 0.0912 0.442 B_Memory LOneK1K
ENSG00000079739 PGM1 -408526 sc-eQTL 5.01e-01 -0.0603 0.0894 0.442 B_Naive LOneK1K
ENSG00000088035 ALG6 -182690 sc-eQTL 3.65e-02 0.192 0.0912 0.442 B_Naive LOneK1K
ENSG00000116641 DOCK7 496499 sc-eQTL 9.56e-01 -0.00471 0.0861 0.442 B_Naive LOneK1K
ENSG00000125703 ATG4C 400753 sc-eQTL 6.49e-01 0.0299 0.0656 0.442 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -408836 sc-eQTL 8.89e-02 -0.158 0.0922 0.442 B_Naive LOneK1K
ENSG00000162607 USP1 748588 sc-eQTL 5.56e-01 -0.0471 0.0797 0.442 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -338487 sc-eQTL 4.64e-02 -0.185 0.0925 0.442 B_Naive LOneK1K
ENSG00000079739 PGM1 -408526 sc-eQTL 8.82e-01 0.0123 0.0828 0.442 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -182690 sc-eQTL 1.70e-03 0.249 0.0784 0.442 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 496499 sc-eQTL 8.08e-01 -0.0197 0.0808 0.442 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 400753 sc-eQTL 4.87e-01 -0.0388 0.0558 0.442 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -408836 sc-eQTL 2.27e-02 -0.187 0.0816 0.442 CD14_Mono LOneK1K
ENSG00000162607 USP1 748588 sc-eQTL 3.23e-01 -0.0697 0.0704 0.442 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 990036 sc-eQTL 6.11e-01 -0.0389 0.0765 0.442 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -408526 sc-eQTL 6.03e-02 -0.146 0.0775 0.442 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -182690 sc-eQTL 7.45e-01 0.0289 0.0887 0.442 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 496499 sc-eQTL 3.12e-01 -0.0887 0.0876 0.442 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 400753 sc-eQTL 8.30e-01 0.0161 0.0748 0.442 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -408836 sc-eQTL 3.43e-01 -0.0824 0.0867 0.442 CD16_Mono LOneK1K
ENSG00000162607 USP1 748588 sc-eQTL 6.99e-01 0.0316 0.0816 0.442 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 990036 sc-eQTL 8.04e-01 -0.0138 0.0557 0.442 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -408526 sc-eQTL 4.70e-01 -0.0499 0.069 0.444 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -182690 sc-eQTL 7.17e-01 0.0301 0.0829 0.444 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 496499 sc-eQTL 4.93e-01 0.051 0.0742 0.444 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 400753 sc-eQTL 8.69e-01 -0.0123 0.0742 0.444 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -408836 sc-eQTL 5.69e-01 -0.0502 0.0878 0.444 NK_CD56dim LOneK1K
ENSG00000162607 USP1 748588 sc-eQTL 8.06e-01 -0.0196 0.0798 0.444 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -338487 sc-eQTL 5.63e-01 -0.0562 0.097 0.444 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142856 ITGB3BP -408836 eQTL 0.0134 -0.071 0.0287 0.0 0.0 0.476
ENSG00000162607 USP1 748588 eQTL 0.0181 0.0298 0.0126 0.00182 0.0 0.476

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142856 ITGB3BP -408836 1.29e-06 8.81e-07 1.22e-07 3.15e-07 1.05e-07 3.26e-07 8.39e-07 1.76e-07 7.15e-07 3.16e-07 1.13e-06 5.35e-07 1.16e-06 2.05e-07 3.94e-07 3.96e-07 5.27e-07 4.65e-07 2.65e-07 2.63e-07 2.51e-07 5.76e-07 6.1e-07 3.01e-07 1.72e-06 2.74e-07 4.97e-07 3.95e-07 7e-07 8.56e-07 4.39e-07 6.42e-08 4.42e-08 2.08e-07 3.29e-07 1.58e-07 8.52e-08 9.58e-08 6.58e-08 1.57e-08 1.23e-07 1.15e-06 5.78e-08 1.53e-08 1.89e-07 4.18e-08 1.3e-07 1.18e-08 5.43e-08