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Genes within 1Mb (chr1:63179339:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -414072 sc-eQTL 5.60e-02 -0.145 0.0757 0.44 B L1
ENSG00000088035 ALG6 -188236 sc-eQTL 2.71e-02 0.174 0.0782 0.44 B L1
ENSG00000116641 DOCK7 490953 sc-eQTL 7.85e-01 0.0216 0.0791 0.44 B L1
ENSG00000125703 ATG4C 395207 sc-eQTL 4.59e-01 0.0408 0.0549 0.44 B L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 5.59e-02 -0.167 0.0867 0.44 B L1
ENSG00000162607 USP1 743042 sc-eQTL 6.13e-01 -0.0385 0.0759 0.44 B L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 1.08e-02 -0.227 0.0882 0.44 B L1
ENSG00000079739 PGM1 -414072 sc-eQTL 9.05e-01 -0.00806 0.0676 0.44 CD4T L1
ENSG00000088035 ALG6 -188236 sc-eQTL 9.02e-01 0.00917 0.0746 0.44 CD4T L1
ENSG00000116641 DOCK7 490953 sc-eQTL 5.94e-01 -0.0402 0.0755 0.44 CD4T L1
ENSG00000125703 ATG4C 395207 sc-eQTL 6.92e-01 -0.0242 0.0609 0.44 CD4T L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.05e-02 -0.22 0.0852 0.44 CD4T L1
ENSG00000162607 USP1 743042 sc-eQTL 8.64e-01 0.0102 0.0592 0.44 CD4T L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 7.89e-01 -0.0209 0.0777 0.44 CD4T L1
ENSG00000079739 PGM1 -414072 sc-eQTL 2.45e-01 -0.0848 0.0728 0.44 CD8T L1
ENSG00000088035 ALG6 -188236 sc-eQTL 8.74e-01 -0.0127 0.0805 0.44 CD8T L1
ENSG00000116641 DOCK7 490953 sc-eQTL 3.88e-01 -0.0705 0.0814 0.44 CD8T L1
ENSG00000125703 ATG4C 395207 sc-eQTL 1.28e-01 0.118 0.077 0.44 CD8T L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.25e-01 -0.105 0.0863 0.44 CD8T L1
ENSG00000162607 USP1 743042 sc-eQTL 6.03e-01 -0.0351 0.0674 0.44 CD8T L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 9.82e-02 -0.142 0.0858 0.44 CD8T L1
ENSG00000079739 PGM1 -414072 sc-eQTL 3.96e-01 -0.0671 0.0789 0.441 DC L1
ENSG00000088035 ALG6 -188236 sc-eQTL 6.96e-01 0.0319 0.0815 0.441 DC L1
ENSG00000116641 DOCK7 490953 sc-eQTL 2.35e-01 -0.0992 0.0833 0.441 DC L1
ENSG00000125703 ATG4C 395207 sc-eQTL 1.51e-01 -0.0939 0.0651 0.441 DC L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.81e-01 -0.0255 0.0914 0.441 DC L1
ENSG00000162607 USP1 743042 sc-eQTL 5.23e-02 -0.154 0.0791 0.441 DC L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 1.61e-01 -0.111 0.0792 0.441 DC L1
ENSG00000079739 PGM1 -414072 sc-eQTL 7.82e-01 -0.0216 0.0781 0.44 Mono L1
ENSG00000088035 ALG6 -188236 sc-eQTL 2.30e-03 0.246 0.0797 0.44 Mono L1
ENSG00000116641 DOCK7 490953 sc-eQTL 2.59e-01 -0.0889 0.0786 0.44 Mono L1
ENSG00000125703 ATG4C 395207 sc-eQTL 8.90e-01 -0.00736 0.0533 0.44 Mono L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 3.13e-03 -0.247 0.0825 0.44 Mono L1
ENSG00000162607 USP1 743042 sc-eQTL 4.93e-01 -0.0475 0.0691 0.44 Mono L1
ENSG00000240563 L1TD1 984490 sc-eQTL 9.65e-01 -0.00281 0.0645 0.44 Mono L1
ENSG00000079739 PGM1 -414072 sc-eQTL 3.70e-01 -0.0622 0.0692 0.44 NK L1
ENSG00000088035 ALG6 -188236 sc-eQTL 6.80e-01 -0.0335 0.0813 0.44 NK L1
ENSG00000116641 DOCK7 490953 sc-eQTL 8.81e-01 -0.0101 0.067 0.44 NK L1
ENSG00000125703 ATG4C 395207 sc-eQTL 6.70e-01 -0.0307 0.0719 0.44 NK L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.62e-01 -0.0271 0.0894 0.44 NK L1
ENSG00000162607 USP1 743042 sc-eQTL 3.30e-01 -0.0779 0.0797 0.44 NK L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.69e-01 0.0161 0.0971 0.44 NK L1
ENSG00000079739 PGM1 -414072 sc-eQTL 5.87e-01 -0.0427 0.0783 0.44 Other_T L1
ENSG00000088035 ALG6 -188236 sc-eQTL 2.70e-01 0.0869 0.0785 0.44 Other_T L1
ENSG00000116641 DOCK7 490953 sc-eQTL 5.02e-01 0.054 0.0803 0.44 Other_T L1
ENSG00000125703 ATG4C 395207 sc-eQTL 2.26e-01 0.0841 0.0694 0.44 Other_T L1
ENSG00000142856 ITGB3BP -414382 sc-eQTL 3.70e-01 0.0553 0.0616 0.44 Other_T L1
ENSG00000162607 USP1 743042 sc-eQTL 9.01e-01 0.00668 0.0535 0.44 Other_T L1
ENSG00000203965 EFCAB7 -344033 sc-eQTL 3.12e-01 0.0962 0.095 0.44 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -414072 sc-eQTL 3.02e-01 -0.105 0.101 0.439 B_Activated L2
ENSG00000088035 ALG6 -188236 sc-eQTL 6.91e-01 -0.0388 0.0973 0.439 B_Activated L2
ENSG00000116641 DOCK7 490953 sc-eQTL 3.11e-01 -0.0918 0.0903 0.439 B_Activated L2
ENSG00000125703 ATG4C 395207 sc-eQTL 5.25e-01 -0.0606 0.0952 0.439 B_Activated L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 5.09e-03 -0.258 0.091 0.439 B_Activated L2
ENSG00000162607 USP1 743042 sc-eQTL 6.99e-01 -0.0391 0.101 0.439 B_Activated L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.83e-01 -0.0129 0.0881 0.439 B_Activated L2
ENSG00000079739 PGM1 -414072 sc-eQTL 1.37e-01 -0.138 0.0925 0.438 B_Intermediate L2
ENSG00000088035 ALG6 -188236 sc-eQTL 7.92e-01 0.025 0.0944 0.438 B_Intermediate L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.83e-01 0.0633 0.0901 0.438 B_Intermediate L2
ENSG00000125703 ATG4C 395207 sc-eQTL 6.18e-01 -0.0381 0.0763 0.438 B_Intermediate L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 8.77e-01 -0.0141 0.091 0.438 B_Intermediate L2
ENSG00000162607 USP1 743042 sc-eQTL 8.11e-01 -0.0218 0.0908 0.438 B_Intermediate L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 2.31e-01 -0.108 0.0898 0.438 B_Intermediate L2
ENSG00000079739 PGM1 -414072 sc-eQTL 4.60e-01 -0.0675 0.0911 0.442 B_Memory L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.08e-02 0.199 0.0917 0.442 B_Memory L2
ENSG00000116641 DOCK7 490953 sc-eQTL 7.29e-01 0.0302 0.087 0.442 B_Memory L2
ENSG00000125703 ATG4C 395207 sc-eQTL 8.46e-01 -0.0161 0.0827 0.442 B_Memory L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 8.50e-03 -0.247 0.0931 0.442 B_Memory L2
ENSG00000162607 USP1 743042 sc-eQTL 4.42e-01 0.0734 0.0953 0.442 B_Memory L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 5.84e-01 -0.0515 0.0939 0.442 B_Memory L2
ENSG00000079739 PGM1 -414072 sc-eQTL 5.53e-01 -0.0545 0.0918 0.44 B_Naive1 L2
ENSG00000088035 ALG6 -188236 sc-eQTL 1.20e-01 0.143 0.0917 0.44 B_Naive1 L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.71e-01 -0.0637 0.0883 0.44 B_Naive1 L2
ENSG00000125703 ATG4C 395207 sc-eQTL 8.65e-01 0.0116 0.0681 0.44 B_Naive1 L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 8.18e-02 -0.157 0.0896 0.44 B_Naive1 L2
ENSG00000162607 USP1 743042 sc-eQTL 9.67e-01 0.00332 0.0794 0.44 B_Naive1 L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 1.74e-02 -0.228 0.095 0.44 B_Naive1 L2
ENSG00000079739 PGM1 -414072 sc-eQTL 2.66e-01 -0.1 0.09 0.442 B_Naive2 L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.17e-01 0.0941 0.0939 0.442 B_Naive2 L2
ENSG00000116641 DOCK7 490953 sc-eQTL 6.97e-01 0.0353 0.0905 0.442 B_Naive2 L2
ENSG00000125703 ATG4C 395207 sc-eQTL 6.17e-01 0.0436 0.0871 0.442 B_Naive2 L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.92e-01 -0.0996 0.0942 0.442 B_Naive2 L2
ENSG00000162607 USP1 743042 sc-eQTL 1.03e-01 -0.146 0.0894 0.442 B_Naive2 L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 6.00e-01 0.0493 0.094 0.442 B_Naive2 L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.67e-01 0.0153 0.0911 0.439 CD4_CTL L2
ENSG00000088035 ALG6 -188236 sc-eQTL 7.31e-01 -0.0332 0.0963 0.439 CD4_CTL L2
ENSG00000116641 DOCK7 490953 sc-eQTL 8.54e-01 -0.0155 0.0842 0.439 CD4_CTL L2
ENSG00000125703 ATG4C 395207 sc-eQTL 5.40e-02 -0.167 0.0863 0.439 CD4_CTL L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.18e-01 -0.145 0.0926 0.439 CD4_CTL L2
ENSG00000162607 USP1 743042 sc-eQTL 1.53e-01 -0.127 0.0882 0.439 CD4_CTL L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 9.13e-01 -0.00969 0.0886 0.439 CD4_CTL L2
ENSG00000079739 PGM1 -414072 sc-eQTL 9.29e-01 -0.0067 0.0754 0.44 CD4_Naive L2
ENSG00000088035 ALG6 -188236 sc-eQTL 6.73e-01 -0.0346 0.0818 0.44 CD4_Naive L2
ENSG00000116641 DOCK7 490953 sc-eQTL 9.05e-01 -0.00957 0.0805 0.44 CD4_Naive L2
ENSG00000125703 ATG4C 395207 sc-eQTL 7.53e-01 0.0224 0.0711 0.44 CD4_Naive L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 6.01e-02 -0.163 0.0862 0.44 CD4_Naive L2
ENSG00000162607 USP1 743042 sc-eQTL 3.36e-01 0.0639 0.0663 0.44 CD4_Naive L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 4.57e-01 0.0642 0.0862 0.44 CD4_Naive L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.56e-01 0.0141 0.0778 0.44 CD4_TCM L2
ENSG00000088035 ALG6 -188236 sc-eQTL 4.91e-01 0.0622 0.0902 0.44 CD4_TCM L2
ENSG00000116641 DOCK7 490953 sc-eQTL 6.74e-01 -0.0337 0.08 0.44 CD4_TCM L2
ENSG00000125703 ATG4C 395207 sc-eQTL 9.60e-01 0.00395 0.0779 0.44 CD4_TCM L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.71e-02 -0.202 0.0908 0.44 CD4_TCM L2
ENSG00000162607 USP1 743042 sc-eQTL 2.96e-01 -0.0787 0.0751 0.44 CD4_TCM L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 9.99e-03 -0.228 0.0875 0.44 CD4_TCM L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.00e-01 -0.0231 0.091 0.44 CD4_TEM L2
ENSG00000088035 ALG6 -188236 sc-eQTL 1.19e-02 0.229 0.0901 0.44 CD4_TEM L2
ENSG00000116641 DOCK7 490953 sc-eQTL 9.38e-01 0.00699 0.0892 0.44 CD4_TEM L2
ENSG00000125703 ATG4C 395207 sc-eQTL 1.10e-01 0.138 0.0861 0.44 CD4_TEM L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.08e-01 -0.143 0.0888 0.44 CD4_TEM L2
ENSG00000162607 USP1 743042 sc-eQTL 2.84e-01 -0.0908 0.0845 0.44 CD4_TEM L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 5.97e-01 -0.049 0.0926 0.44 CD4_TEM L2
ENSG00000079739 PGM1 -414072 sc-eQTL 1.76e-01 -0.112 0.0821 0.44 CD8_CTL L2
ENSG00000088035 ALG6 -188236 sc-eQTL 7.82e-01 -0.0243 0.0877 0.44 CD8_CTL L2
ENSG00000116641 DOCK7 490953 sc-eQTL 9.15e-01 -0.0089 0.0832 0.44 CD8_CTL L2
ENSG00000125703 ATG4C 395207 sc-eQTL 4.38e-01 0.0687 0.0885 0.44 CD8_CTL L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.71e-01 0.0268 0.0921 0.44 CD8_CTL L2
ENSG00000162607 USP1 743042 sc-eQTL 5.00e-01 0.0557 0.0824 0.44 CD8_CTL L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 6.20e-01 0.0468 0.0943 0.44 CD8_CTL L2
ENSG00000079739 PGM1 -414072 sc-eQTL 2.15e-01 -0.105 0.0842 0.44 CD8_Naive L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.06e-01 0.0895 0.0872 0.44 CD8_Naive L2
ENSG00000116641 DOCK7 490953 sc-eQTL 6.46e-01 -0.0415 0.0903 0.44 CD8_Naive L2
ENSG00000125703 ATG4C 395207 sc-eQTL 9.62e-01 -0.00418 0.0868 0.44 CD8_Naive L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 5.08e-02 -0.171 0.0871 0.44 CD8_Naive L2
ENSG00000162607 USP1 743042 sc-eQTL 4.43e-01 -0.057 0.0742 0.44 CD8_Naive L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 4.55e-02 -0.165 0.0821 0.44 CD8_Naive L2
ENSG00000079739 PGM1 -414072 sc-eQTL 9.97e-01 -0.000332 0.0915 0.44 CD8_TCM L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.33e-01 -0.0896 0.0924 0.44 CD8_TCM L2
ENSG00000116641 DOCK7 490953 sc-eQTL 2.06e-01 0.114 0.09 0.44 CD8_TCM L2
ENSG00000125703 ATG4C 395207 sc-eQTL 3.58e-01 0.0849 0.0922 0.44 CD8_TCM L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.76e-02 -0.212 0.0885 0.44 CD8_TCM L2
ENSG00000162607 USP1 743042 sc-eQTL 1.59e-01 -0.122 0.086 0.44 CD8_TCM L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.80e-01 -0.0139 0.0915 0.44 CD8_TCM L2
ENSG00000079739 PGM1 -414072 sc-eQTL 3.56e-01 -0.0867 0.0937 0.441 CD8_TEM L2
ENSG00000088035 ALG6 -188236 sc-eQTL 5.31e-01 0.0592 0.0942 0.441 CD8_TEM L2
ENSG00000116641 DOCK7 490953 sc-eQTL 8.55e-01 -0.0167 0.0914 0.441 CD8_TEM L2
ENSG00000125703 ATG4C 395207 sc-eQTL 2.52e-01 0.101 0.0876 0.441 CD8_TEM L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 4.84e-01 0.0666 0.095 0.441 CD8_TEM L2
ENSG00000162607 USP1 743042 sc-eQTL 7.29e-01 -0.0314 0.0907 0.441 CD8_TEM L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 5.98e-01 0.0487 0.0922 0.441 CD8_TEM L2
ENSG00000079739 PGM1 -414072 sc-eQTL 9.95e-01 0.000554 0.089 0.439 MAIT L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.24e-01 0.0869 0.0879 0.439 MAIT L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.53e-01 0.0634 0.0843 0.439 MAIT L2
ENSG00000125703 ATG4C 395207 sc-eQTL 7.50e-01 0.0285 0.089 0.439 MAIT L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 8.26e-01 -0.0197 0.0892 0.439 MAIT L2
ENSG00000162607 USP1 743042 sc-eQTL 9.37e-01 -0.00705 0.0885 0.439 MAIT L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 1.08e-02 0.233 0.0904 0.439 MAIT L2
ENSG00000079739 PGM1 -414072 sc-eQTL 1.65e-01 -0.123 0.0887 0.444 NK_CD56bright L2
ENSG00000088035 ALG6 -188236 sc-eQTL 3.65e-01 -0.0827 0.0911 0.444 NK_CD56bright L2
ENSG00000116641 DOCK7 490953 sc-eQTL 7.40e-01 -0.0263 0.0791 0.444 NK_CD56bright L2
ENSG00000125703 ATG4C 395207 sc-eQTL 6.15e-01 0.0445 0.0883 0.444 NK_CD56bright L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 6.29e-01 0.0445 0.092 0.444 NK_CD56bright L2
ENSG00000162607 USP1 743042 sc-eQTL 1.95e-02 -0.22 0.0936 0.444 NK_CD56bright L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 7.13e-01 -0.0334 0.0908 0.444 NK_CD56bright L2
ENSG00000079739 PGM1 -414072 sc-eQTL 5.18e-01 0.0461 0.0712 0.442 NK_CD56dim L2
ENSG00000088035 ALG6 -188236 sc-eQTL 6.47e-01 -0.0414 0.0903 0.442 NK_CD56dim L2
ENSG00000116641 DOCK7 490953 sc-eQTL 5.07e-01 -0.0521 0.0785 0.442 NK_CD56dim L2
ENSG00000125703 ATG4C 395207 sc-eQTL 3.05e-01 0.082 0.0797 0.442 NK_CD56dim L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 9.19e-01 -0.00928 0.0909 0.442 NK_CD56dim L2
ENSG00000162607 USP1 743042 sc-eQTL 6.25e-01 -0.0431 0.0881 0.442 NK_CD56dim L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 9.74e-01 -0.00316 0.0982 0.442 NK_CD56dim L2
ENSG00000079739 PGM1 -414072 sc-eQTL 3.23e-02 -0.21 0.0974 0.45 NK_HLA L2
ENSG00000088035 ALG6 -188236 sc-eQTL 9.66e-01 0.00441 0.102 0.45 NK_HLA L2
ENSG00000116641 DOCK7 490953 sc-eQTL 5.01e-01 0.0527 0.078 0.45 NK_HLA L2
ENSG00000125703 ATG4C 395207 sc-eQTL 2.71e-01 -0.0999 0.0906 0.45 NK_HLA L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.58e-01 -0.0294 0.0954 0.45 NK_HLA L2
ENSG00000162607 USP1 743042 sc-eQTL 7.61e-01 0.0304 0.0998 0.45 NK_HLA L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 6.27e-01 0.0441 0.0908 0.45 NK_HLA L2
ENSG00000079739 PGM1 -414072 sc-eQTL 6.71e-01 0.0333 0.0782 0.442 NK_cytokine L2
ENSG00000088035 ALG6 -188236 sc-eQTL 7.32e-01 0.0303 0.0883 0.442 NK_cytokine L2
ENSG00000116641 DOCK7 490953 sc-eQTL 1.29e-01 0.124 0.0814 0.442 NK_cytokine L2
ENSG00000125703 ATG4C 395207 sc-eQTL 9.48e-01 0.0055 0.0837 0.442 NK_cytokine L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 3.19e-02 -0.185 0.0858 0.442 NK_cytokine L2
ENSG00000162607 USP1 743042 sc-eQTL 5.66e-01 0.0524 0.0911 0.442 NK_cytokine L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 7.00e-01 0.0357 0.0924 0.442 NK_cytokine L2
ENSG00000079739 PGM1 -414072 sc-eQTL 7.33e-01 -0.0367 0.107 0.452 PB L2
ENSG00000088035 ALG6 -188236 sc-eQTL 2.29e-01 0.135 0.112 0.452 PB L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.85e-01 -0.0843 0.12 0.452 PB L2
ENSG00000125703 ATG4C 395207 sc-eQTL 4.92e-01 0.0723 0.105 0.452 PB L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 6.20e-01 0.0521 0.105 0.452 PB L2
ENSG00000162607 USP1 743042 sc-eQTL 6.29e-01 -0.0506 0.104 0.452 PB L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 4.29e-01 -0.0912 0.115 0.452 PB L2
ENSG00000079739 PGM1 -414072 sc-eQTL 5.65e-01 -0.0477 0.0828 0.437 Pro_T L2
ENSG00000088035 ALG6 -188236 sc-eQTL 1.35e-01 0.126 0.0838 0.437 Pro_T L2
ENSG00000116641 DOCK7 490953 sc-eQTL 6.86e-01 0.0342 0.0846 0.437 Pro_T L2
ENSG00000125703 ATG4C 395207 sc-eQTL 8.05e-01 0.0183 0.074 0.437 Pro_T L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.80e-01 0.0208 0.0743 0.437 Pro_T L2
ENSG00000162607 USP1 743042 sc-eQTL 2.80e-01 0.0551 0.0509 0.437 Pro_T L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.14e-01 0.0204 0.0863 0.437 Pro_T L2
ENSG00000079739 PGM1 -414072 sc-eQTL 1.54e-01 -0.123 0.0863 0.44 Treg L2
ENSG00000088035 ALG6 -188236 sc-eQTL 8.15e-01 -0.0217 0.0927 0.44 Treg L2
ENSG00000116641 DOCK7 490953 sc-eQTL 9.09e-01 0.00969 0.0852 0.44 Treg L2
ENSG00000125703 ATG4C 395207 sc-eQTL 2.93e-01 0.0916 0.0868 0.44 Treg L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.12e-01 -0.144 0.0905 0.44 Treg L2
ENSG00000162607 USP1 743042 sc-eQTL 3.82e-01 -0.0771 0.0879 0.44 Treg L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 2.69e-01 -0.0963 0.0869 0.44 Treg L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.45e-01 -0.0172 0.0875 0.439 cDC L2
ENSG00000088035 ALG6 -188236 sc-eQTL 2.34e-01 -0.106 0.0884 0.439 cDC L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.26e-02 -0.176 0.0861 0.439 cDC L2
ENSG00000125703 ATG4C 395207 sc-eQTL 8.08e-01 -0.0184 0.0756 0.439 cDC L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 9.54e-01 0.00559 0.0958 0.439 cDC L2
ENSG00000162607 USP1 743042 sc-eQTL 1.25e-01 -0.131 0.0848 0.439 cDC L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.64e-01 -0.0132 0.077 0.439 cDC L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.91e-01 -0.0112 0.0814 0.44 cMono_IL1B L2
ENSG00000088035 ALG6 -188236 sc-eQTL 5.29e-02 0.157 0.0808 0.44 cMono_IL1B L2
ENSG00000116641 DOCK7 490953 sc-eQTL 9.17e-01 -0.00892 0.0859 0.44 cMono_IL1B L2
ENSG00000125703 ATG4C 395207 sc-eQTL 1.70e-01 0.0827 0.0601 0.44 cMono_IL1B L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.51e-01 -0.0982 0.0853 0.44 cMono_IL1B L2
ENSG00000162607 USP1 743042 sc-eQTL 3.32e-01 -0.0733 0.0753 0.44 cMono_IL1B L2
ENSG00000240563 L1TD1 984490 sc-eQTL 3.64e-01 -0.0688 0.0757 0.44 cMono_IL1B L2
ENSG00000079739 PGM1 -414072 sc-eQTL 8.98e-01 -0.0115 0.0899 0.44 cMono_S100A L2
ENSG00000088035 ALG6 -188236 sc-eQTL 2.19e-02 0.208 0.0899 0.44 cMono_S100A L2
ENSG00000116641 DOCK7 490953 sc-eQTL 7.94e-01 -0.0221 0.0844 0.44 cMono_S100A L2
ENSG00000125703 ATG4C 395207 sc-eQTL 1.62e-01 -0.102 0.0728 0.44 cMono_S100A L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 4.82e-03 -0.231 0.0809 0.44 cMono_S100A L2
ENSG00000162607 USP1 743042 sc-eQTL 3.01e-01 -0.0878 0.0847 0.44 cMono_S100A L2
ENSG00000240563 L1TD1 984490 sc-eQTL 7.48e-01 0.0227 0.0706 0.44 cMono_S100A L2
ENSG00000079739 PGM1 -414072 sc-eQTL 3.75e-01 -0.0887 0.0996 0.439 gdT L2
ENSG00000088035 ALG6 -188236 sc-eQTL 5.28e-01 0.0673 0.106 0.439 gdT L2
ENSG00000116641 DOCK7 490953 sc-eQTL 4.85e-01 0.073 0.104 0.439 gdT L2
ENSG00000125703 ATG4C 395207 sc-eQTL 9.73e-02 0.165 0.0989 0.439 gdT L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.18e-01 0.165 0.105 0.439 gdT L2
ENSG00000162607 USP1 743042 sc-eQTL 8.94e-01 0.0134 0.1 0.439 gdT L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 3.66e-01 -0.0943 0.104 0.439 gdT L2
ENSG00000079739 PGM1 -414072 sc-eQTL 5.15e-01 -0.0585 0.0898 0.442 intMono L2
ENSG00000088035 ALG6 -188236 sc-eQTL 5.69e-01 0.0478 0.0837 0.442 intMono L2
ENSG00000116641 DOCK7 490953 sc-eQTL 6.93e-01 -0.0338 0.0855 0.442 intMono L2
ENSG00000125703 ATG4C 395207 sc-eQTL 4.54e-01 -0.0612 0.0815 0.442 intMono L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.06e-01 -0.114 0.0896 0.442 intMono L2
ENSG00000162607 USP1 743042 sc-eQTL 1.41e-01 -0.134 0.091 0.442 intMono L2
ENSG00000240563 L1TD1 984490 sc-eQTL 6.60e-01 0.0296 0.0672 0.442 intMono L2
ENSG00000079739 PGM1 -414072 sc-eQTL 3.94e-01 -0.0697 0.0816 0.441 ncMono L2
ENSG00000088035 ALG6 -188236 sc-eQTL 4.87e-01 0.0624 0.0897 0.441 ncMono L2
ENSG00000116641 DOCK7 490953 sc-eQTL 2.23e-01 -0.108 0.0881 0.441 ncMono L2
ENSG00000125703 ATG4C 395207 sc-eQTL 4.00e-01 0.0696 0.0824 0.441 ncMono L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 4.91e-01 -0.0595 0.0863 0.441 ncMono L2
ENSG00000162607 USP1 743042 sc-eQTL 1.32e-01 0.133 0.0877 0.441 ncMono L2
ENSG00000240563 L1TD1 984490 sc-eQTL 5.07e-01 -0.0415 0.0625 0.441 ncMono L2
ENSG00000079739 PGM1 -414072 sc-eQTL 6.11e-01 0.0519 0.102 0.41 pDC L2
ENSG00000088035 ALG6 -188236 sc-eQTL 5.52e-01 0.0591 0.0992 0.41 pDC L2
ENSG00000116641 DOCK7 490953 sc-eQTL 8.33e-01 0.0215 0.101 0.41 pDC L2
ENSG00000125703 ATG4C 395207 sc-eQTL 2.37e-01 -0.108 0.0906 0.41 pDC L2
ENSG00000142856 ITGB3BP -414382 sc-eQTL 9.49e-01 -0.00652 0.102 0.41 pDC L2
ENSG00000162607 USP1 743042 sc-eQTL 5.85e-01 0.0569 0.104 0.41 pDC L2
ENSG00000203965 EFCAB7 -344033 sc-eQTL 4.77e-02 -0.178 0.0893 0.41 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -414072 sc-eQTL 2.39e-02 -0.195 0.0858 0.44 B_Memory LOneK1K
ENSG00000088035 ALG6 -188236 sc-eQTL 3.44e-01 0.0908 0.0958 0.44 B_Memory LOneK1K
ENSG00000116641 DOCK7 490953 sc-eQTL 5.99e-01 0.0438 0.0832 0.44 B_Memory LOneK1K
ENSG00000125703 ATG4C 395207 sc-eQTL 2.84e-01 -0.0721 0.0672 0.44 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -414382 sc-eQTL 3.42e-02 -0.187 0.0875 0.44 B_Memory LOneK1K
ENSG00000162607 USP1 743042 sc-eQTL 5.75e-01 0.0482 0.0858 0.44 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -344033 sc-eQTL 2.84e-01 -0.0988 0.092 0.44 B_Memory LOneK1K
ENSG00000079739 PGM1 -414072 sc-eQTL 3.29e-01 -0.0878 0.0898 0.44 B_Naive LOneK1K
ENSG00000088035 ALG6 -188236 sc-eQTL 6.29e-02 0.172 0.0919 0.44 B_Naive LOneK1K
ENSG00000116641 DOCK7 490953 sc-eQTL 6.17e-01 -0.0434 0.0865 0.44 B_Naive LOneK1K
ENSG00000125703 ATG4C 395207 sc-eQTL 6.09e-01 0.0338 0.066 0.44 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -414382 sc-eQTL 1.10e-01 -0.149 0.0928 0.44 B_Naive LOneK1K
ENSG00000162607 USP1 743042 sc-eQTL 7.77e-01 -0.0228 0.0802 0.44 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -344033 sc-eQTL 8.99e-02 -0.159 0.0932 0.44 B_Naive LOneK1K
ENSG00000079739 PGM1 -414072 sc-eQTL 9.57e-01 -0.00446 0.0834 0.44 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -188236 sc-eQTL 3.01e-03 0.237 0.079 0.44 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 490953 sc-eQTL 7.84e-01 -0.0223 0.0813 0.44 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 395207 sc-eQTL 8.32e-01 -0.0119 0.0562 0.44 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -414382 sc-eQTL 7.23e-03 -0.222 0.0817 0.44 CD14_Mono LOneK1K
ENSG00000162607 USP1 743042 sc-eQTL 1.43e-01 -0.104 0.0706 0.44 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 984490 sc-eQTL 8.26e-01 -0.0169 0.077 0.44 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -414072 sc-eQTL 1.33e-01 -0.117 0.0775 0.44 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -188236 sc-eQTL 6.89e-01 0.0355 0.0885 0.44 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 490953 sc-eQTL 1.66e-01 -0.121 0.0872 0.44 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 395207 sc-eQTL 7.34e-01 -0.0254 0.0746 0.44 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -414382 sc-eQTL 2.50e-01 -0.0997 0.0864 0.44 CD16_Mono LOneK1K
ENSG00000162607 USP1 743042 sc-eQTL 6.59e-01 0.036 0.0814 0.44 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 984490 sc-eQTL 9.77e-01 -0.00157 0.0556 0.44 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -414072 sc-eQTL 3.85e-01 -0.0613 0.0704 0.442 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -188236 sc-eQTL 8.59e-01 0.0151 0.0847 0.442 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 490953 sc-eQTL 6.50e-01 0.0345 0.0758 0.442 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 395207 sc-eQTL 9.32e-01 -0.00644 0.0757 0.442 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -414382 sc-eQTL 4.56e-01 -0.0669 0.0896 0.442 NK_CD56dim LOneK1K
ENSG00000162607 USP1 743042 sc-eQTL 7.93e-01 -0.0214 0.0814 0.442 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -344033 sc-eQTL 7.56e-01 -0.0308 0.0991 0.442 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000142856 ITGB3BP -414382 eQTL 0.00719 -0.078 0.0289 0.0 0.0 0.466
ENSG00000162607 USP1 743042 eQTL 0.0386 0.0264 0.0127 0.00116 0.0 0.466

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142856 ITGB3BP -414382 8.35e-07 4.97e-07 1.05e-07 3.58e-07 9.26e-08 2.01e-07 5.28e-07 1.03e-07 3.66e-07 2.16e-07 5.29e-07 3.5e-07 6.77e-07 1.23e-07 1.78e-07 2e-07 2.48e-07 3.67e-07 1.77e-07 1.32e-07 1.86e-07 3.15e-07 3.08e-07 1.34e-07 6.65e-07 2.46e-07 2.52e-07 2.24e-07 3.58e-07 4.61e-07 2.43e-07 6.13e-08 5.51e-08 1.36e-07 3.05e-07 7.92e-08 1.03e-07 8.33e-08 4.04e-08 5.77e-08 8.35e-08 4.04e-07 2.75e-08 1.76e-08 1.27e-07 1.61e-08 8.84e-08 1.15e-08 5.44e-08