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Genes within 1Mb (chr1:63173866:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419545 sc-eQTL 7.13e-01 -0.03 0.0814 0.312 B L1
ENSG00000088035 ALG6 -193709 sc-eQTL 6.91e-01 0.0335 0.0843 0.312 B L1
ENSG00000116641 DOCK7 485480 sc-eQTL 5.94e-01 -0.045 0.0843 0.312 B L1
ENSG00000125703 ATG4C 389734 sc-eQTL 2.25e-01 -0.0712 0.0584 0.312 B L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.81e-01 0.1 0.093 0.312 B L1
ENSG00000162607 USP1 737569 sc-eQTL 2.99e-01 0.0841 0.0808 0.312 B L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 1.19e-01 0.149 0.095 0.312 B L1
ENSG00000079739 PGM1 -419545 sc-eQTL 6.52e-01 -0.0309 0.0682 0.312 CD4T L1
ENSG00000088035 ALG6 -193709 sc-eQTL 7.81e-01 -0.021 0.0753 0.312 CD4T L1
ENSG00000116641 DOCK7 485480 sc-eQTL 3.70e-01 -0.0683 0.0761 0.312 CD4T L1
ENSG00000125703 ATG4C 389734 sc-eQTL 1.68e-01 -0.0848 0.0613 0.312 CD4T L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 7.96e-02 0.153 0.0868 0.312 CD4T L1
ENSG00000162607 USP1 737569 sc-eQTL 7.86e-01 -0.0162 0.0597 0.312 CD4T L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 4.08e-01 -0.0649 0.0783 0.312 CD4T L1
ENSG00000079739 PGM1 -419545 sc-eQTL 8.23e-01 0.017 0.0759 0.312 CD8T L1
ENSG00000088035 ALG6 -193709 sc-eQTL 9.39e-01 0.00645 0.0836 0.312 CD8T L1
ENSG00000116641 DOCK7 485480 sc-eQTL 5.40e-01 -0.052 0.0846 0.312 CD8T L1
ENSG00000125703 ATG4C 389734 sc-eQTL 6.21e-02 -0.15 0.0798 0.312 CD8T L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 5.07e-01 0.0597 0.0899 0.312 CD8T L1
ENSG00000162607 USP1 737569 sc-eQTL 2.05e-01 0.0889 0.0698 0.312 CD8T L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 2.26e-01 0.109 0.0894 0.312 CD8T L1
ENSG00000079739 PGM1 -419545 sc-eQTL 1.52e-01 -0.12 0.0833 0.311 DC L1
ENSG00000088035 ALG6 -193709 sc-eQTL 1.41e-01 -0.127 0.0859 0.311 DC L1
ENSG00000116641 DOCK7 485480 sc-eQTL 7.23e-01 0.0314 0.0885 0.311 DC L1
ENSG00000125703 ATG4C 389734 sc-eQTL 9.48e-01 0.00448 0.0693 0.311 DC L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 9.62e-02 0.161 0.0962 0.311 DC L1
ENSG00000162607 USP1 737569 sc-eQTL 1.24e-02 0.21 0.0832 0.311 DC L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 2.94e-01 -0.0884 0.0841 0.311 DC L1
ENSG00000079739 PGM1 -419545 sc-eQTL 5.50e-01 0.0491 0.082 0.312 Mono L1
ENSG00000088035 ALG6 -193709 sc-eQTL 1.75e-01 -0.116 0.0853 0.312 Mono L1
ENSG00000116641 DOCK7 485480 sc-eQTL 4.77e-01 0.059 0.0828 0.312 Mono L1
ENSG00000125703 ATG4C 389734 sc-eQTL 6.41e-01 0.0262 0.056 0.312 Mono L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 7.53e-01 0.0278 0.0885 0.312 Mono L1
ENSG00000162607 USP1 737569 sc-eQTL 5.24e-01 0.0463 0.0726 0.312 Mono L1
ENSG00000240563 L1TD1 979017 sc-eQTL 5.36e-01 -0.042 0.0678 0.312 Mono L1
ENSG00000079739 PGM1 -419545 sc-eQTL 9.95e-01 -0.000481 0.0715 0.311 NK L1
ENSG00000088035 ALG6 -193709 sc-eQTL 8.73e-01 0.0135 0.0839 0.311 NK L1
ENSG00000116641 DOCK7 485480 sc-eQTL 6.39e-01 0.0324 0.0691 0.311 NK L1
ENSG00000125703 ATG4C 389734 sc-eQTL 3.87e-01 -0.0642 0.0741 0.311 NK L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.03e-01 -0.117 0.0919 0.311 NK L1
ENSG00000162607 USP1 737569 sc-eQTL 9.74e-01 -0.00271 0.0824 0.311 NK L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 6.90e-01 0.0399 0.1 0.311 NK L1
ENSG00000079739 PGM1 -419545 sc-eQTL 7.83e-01 -0.0222 0.0803 0.312 Other_T L1
ENSG00000088035 ALG6 -193709 sc-eQTL 5.45e-01 0.0489 0.0806 0.312 Other_T L1
ENSG00000116641 DOCK7 485480 sc-eQTL 6.84e-01 -0.0335 0.0823 0.312 Other_T L1
ENSG00000125703 ATG4C 389734 sc-eQTL 4.50e-02 -0.142 0.0706 0.312 Other_T L1
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.99e-01 -0.0534 0.0631 0.312 Other_T L1
ENSG00000162607 USP1 737569 sc-eQTL 7.84e-01 0.015 0.0548 0.312 Other_T L1
ENSG00000203965 EFCAB7 -349506 sc-eQTL 9.57e-02 0.162 0.0969 0.312 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419545 sc-eQTL 7.10e-01 -0.0392 0.105 0.319 B_Activated L2
ENSG00000088035 ALG6 -193709 sc-eQTL 8.45e-01 0.0197 0.101 0.319 B_Activated L2
ENSG00000116641 DOCK7 485480 sc-eQTL 4.27e-01 0.0747 0.0938 0.319 B_Activated L2
ENSG00000125703 ATG4C 389734 sc-eQTL 6.54e-01 0.0443 0.0987 0.319 B_Activated L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.78e-01 0.105 0.0962 0.319 B_Activated L2
ENSG00000162607 USP1 737569 sc-eQTL 3.00e-01 -0.109 0.104 0.319 B_Activated L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 3.31e-01 0.0888 0.0911 0.319 B_Activated L2
ENSG00000079739 PGM1 -419545 sc-eQTL 3.37e-01 0.0932 0.0969 0.311 B_Intermediate L2
ENSG00000088035 ALG6 -193709 sc-eQTL 8.53e-02 0.169 0.0979 0.311 B_Intermediate L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.99e-01 -0.000139 0.0942 0.311 B_Intermediate L2
ENSG00000125703 ATG4C 389734 sc-eQTL 8.57e-01 -0.0144 0.0798 0.311 B_Intermediate L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.37e-01 0.0912 0.0948 0.311 B_Intermediate L2
ENSG00000162607 USP1 737569 sc-eQTL 5.59e-01 0.0554 0.0948 0.311 B_Intermediate L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 3.27e-01 0.0922 0.0939 0.311 B_Intermediate L2
ENSG00000079739 PGM1 -419545 sc-eQTL 9.98e-01 0.000298 0.0968 0.306 B_Memory L2
ENSG00000088035 ALG6 -193709 sc-eQTL 7.18e-01 0.0356 0.0984 0.306 B_Memory L2
ENSG00000116641 DOCK7 485480 sc-eQTL 1.94e-01 -0.12 0.092 0.306 B_Memory L2
ENSG00000125703 ATG4C 389734 sc-eQTL 4.39e-01 0.0679 0.0876 0.306 B_Memory L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.77e-01 0.109 0.1 0.306 B_Memory L2
ENSG00000162607 USP1 737569 sc-eQTL 3.05e-01 0.104 0.101 0.306 B_Memory L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 6.25e-01 -0.0488 0.0996 0.306 B_Memory L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.75e-01 -0.13 0.0959 0.312 B_Naive1 L2
ENSG00000088035 ALG6 -193709 sc-eQTL 7.95e-01 0.0251 0.0966 0.312 B_Naive1 L2
ENSG00000116641 DOCK7 485480 sc-eQTL 8.47e-01 0.0179 0.0926 0.312 B_Naive1 L2
ENSG00000125703 ATG4C 389734 sc-eQTL 2.36e-02 -0.161 0.0705 0.312 B_Naive1 L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.55e-01 0.0875 0.0945 0.312 B_Naive1 L2
ENSG00000162607 USP1 737569 sc-eQTL 7.51e-01 -0.0264 0.0832 0.312 B_Naive1 L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 3.54e-02 0.212 0.0999 0.312 B_Naive1 L2
ENSG00000079739 PGM1 -419545 sc-eQTL 3.36e-01 -0.0915 0.0949 0.309 B_Naive2 L2
ENSG00000088035 ALG6 -193709 sc-eQTL 4.66e-01 -0.0723 0.099 0.309 B_Naive2 L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.46e-01 -0.00645 0.0954 0.309 B_Naive2 L2
ENSG00000125703 ATG4C 389734 sc-eQTL 6.55e-01 -0.0411 0.0917 0.309 B_Naive2 L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 5.84e-01 0.0545 0.0995 0.309 B_Naive2 L2
ENSG00000162607 USP1 737569 sc-eQTL 5.34e-02 0.182 0.0939 0.309 B_Naive2 L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 8.66e-01 0.0167 0.099 0.309 B_Naive2 L2
ENSG00000079739 PGM1 -419545 sc-eQTL 8.22e-02 -0.167 0.0955 0.309 CD4_CTL L2
ENSG00000088035 ALG6 -193709 sc-eQTL 2.22e-01 0.124 0.101 0.309 CD4_CTL L2
ENSG00000116641 DOCK7 485480 sc-eQTL 7.20e-01 0.0319 0.0889 0.309 CD4_CTL L2
ENSG00000125703 ATG4C 389734 sc-eQTL 3.66e-01 0.0832 0.0918 0.309 CD4_CTL L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.93e-02 0.202 0.0974 0.309 CD4_CTL L2
ENSG00000162607 USP1 737569 sc-eQTL 4.75e-01 -0.067 0.0936 0.309 CD4_CTL L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.13e-01 -0.0612 0.0934 0.309 CD4_CTL L2
ENSG00000079739 PGM1 -419545 sc-eQTL 3.06e-01 -0.0787 0.0767 0.312 CD4_Naive L2
ENSG00000088035 ALG6 -193709 sc-eQTL 3.03e-01 -0.086 0.0833 0.312 CD4_Naive L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.83e-02 -0.135 0.0816 0.312 CD4_Naive L2
ENSG00000125703 ATG4C 389734 sc-eQTL 3.73e-01 -0.0648 0.0725 0.312 CD4_Naive L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.26e-01 0.107 0.0884 0.312 CD4_Naive L2
ENSG00000162607 USP1 737569 sc-eQTL 5.72e-01 -0.0383 0.0677 0.312 CD4_Naive L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 4.04e-01 -0.0736 0.0879 0.312 CD4_Naive L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.63e-01 0.112 0.0796 0.312 CD4_TCM L2
ENSG00000088035 ALG6 -193709 sc-eQTL 5.43e-01 0.0565 0.0928 0.312 CD4_TCM L2
ENSG00000116641 DOCK7 485480 sc-eQTL 2.63e-01 0.0921 0.0821 0.312 CD4_TCM L2
ENSG00000125703 ATG4C 389734 sc-eQTL 5.21e-02 -0.155 0.0794 0.312 CD4_TCM L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 1.50e-01 0.136 0.094 0.312 CD4_TCM L2
ENSG00000162607 USP1 737569 sc-eQTL 3.22e-01 0.0768 0.0773 0.312 CD4_TCM L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 9.06e-01 -0.0108 0.0914 0.312 CD4_TCM L2
ENSG00000079739 PGM1 -419545 sc-eQTL 4.39e-01 -0.0732 0.0944 0.312 CD4_TEM L2
ENSG00000088035 ALG6 -193709 sc-eQTL 6.08e-01 -0.0487 0.095 0.312 CD4_TEM L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.90e-01 0.00113 0.0926 0.312 CD4_TEM L2
ENSG00000125703 ATG4C 389734 sc-eQTL 2.34e-01 -0.107 0.0897 0.312 CD4_TEM L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 6.07e-02 0.174 0.0921 0.312 CD4_TEM L2
ENSG00000162607 USP1 737569 sc-eQTL 9.36e-01 0.00713 0.088 0.312 CD4_TEM L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.24e-01 -0.0614 0.0961 0.312 CD4_TEM L2
ENSG00000079739 PGM1 -419545 sc-eQTL 9.52e-01 -0.00525 0.0875 0.312 CD8_CTL L2
ENSG00000088035 ALG6 -193709 sc-eQTL 4.32e-01 0.0731 0.0929 0.312 CD8_CTL L2
ENSG00000116641 DOCK7 485480 sc-eQTL 8.71e-01 -0.0143 0.0883 0.312 CD8_CTL L2
ENSG00000125703 ATG4C 389734 sc-eQTL 8.97e-01 -0.0121 0.094 0.312 CD8_CTL L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 7.07e-01 0.0367 0.0977 0.312 CD8_CTL L2
ENSG00000162607 USP1 737569 sc-eQTL 5.67e-01 0.0501 0.0874 0.312 CD8_CTL L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 8.45e-01 0.0196 0.1 0.312 CD8_CTL L2
ENSG00000079739 PGM1 -419545 sc-eQTL 5.66e-01 0.0502 0.0873 0.312 CD8_Naive L2
ENSG00000088035 ALG6 -193709 sc-eQTL 2.33e-02 -0.204 0.0893 0.312 CD8_Naive L2
ENSG00000116641 DOCK7 485480 sc-eQTL 4.19e-01 -0.0755 0.0933 0.312 CD8_Naive L2
ENSG00000125703 ATG4C 389734 sc-eQTL 3.69e-01 -0.0805 0.0896 0.312 CD8_Naive L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 1.09e-01 0.145 0.0903 0.312 CD8_Naive L2
ENSG00000162607 USP1 737569 sc-eQTL 4.36e-01 0.0598 0.0767 0.312 CD8_Naive L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.15e-01 0.0559 0.0856 0.312 CD8_Naive L2
ENSG00000079739 PGM1 -419545 sc-eQTL 7.87e-01 -0.0259 0.0955 0.317 CD8_TCM L2
ENSG00000088035 ALG6 -193709 sc-eQTL 4.02e-01 -0.0811 0.0965 0.317 CD8_TCM L2
ENSG00000116641 DOCK7 485480 sc-eQTL 1.50e-01 -0.136 0.0939 0.317 CD8_TCM L2
ENSG00000125703 ATG4C 389734 sc-eQTL 3.76e-01 -0.0855 0.0963 0.317 CD8_TCM L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 7.26e-01 0.0329 0.0938 0.317 CD8_TCM L2
ENSG00000162607 USP1 737569 sc-eQTL 2.43e-01 0.105 0.0899 0.317 CD8_TCM L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 4.88e-01 0.0663 0.0955 0.317 CD8_TCM L2
ENSG00000079739 PGM1 -419545 sc-eQTL 2.16e-01 0.121 0.0978 0.311 CD8_TEM L2
ENSG00000088035 ALG6 -193709 sc-eQTL 7.88e-01 0.0265 0.0985 0.311 CD8_TEM L2
ENSG00000116641 DOCK7 485480 sc-eQTL 8.24e-01 0.0213 0.0955 0.311 CD8_TEM L2
ENSG00000125703 ATG4C 389734 sc-eQTL 6.72e-01 -0.0389 0.0918 0.311 CD8_TEM L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 8.77e-01 0.0154 0.0994 0.311 CD8_TEM L2
ENSG00000162607 USP1 737569 sc-eQTL 6.68e-01 0.0408 0.0948 0.311 CD8_TEM L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 1.52e-01 0.138 0.0959 0.311 CD8_TEM L2
ENSG00000079739 PGM1 -419545 sc-eQTL 8.67e-01 0.0156 0.0926 0.312 MAIT L2
ENSG00000088035 ALG6 -193709 sc-eQTL 3.87e-01 0.0793 0.0915 0.312 MAIT L2
ENSG00000116641 DOCK7 485480 sc-eQTL 2.61e-01 -0.0986 0.0876 0.312 MAIT L2
ENSG00000125703 ATG4C 389734 sc-eQTL 1.90e-02 -0.216 0.0914 0.312 MAIT L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 5.81e-01 0.0512 0.0927 0.312 MAIT L2
ENSG00000162607 USP1 737569 sc-eQTL 2.92e-01 0.0971 0.0919 0.312 MAIT L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 8.94e-01 -0.0127 0.0956 0.312 MAIT L2
ENSG00000079739 PGM1 -419545 sc-eQTL 7.93e-01 -0.0245 0.0931 0.304 NK_CD56bright L2
ENSG00000088035 ALG6 -193709 sc-eQTL 4.99e-01 0.0646 0.0953 0.304 NK_CD56bright L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.64e-01 0.00373 0.0827 0.304 NK_CD56bright L2
ENSG00000125703 ATG4C 389734 sc-eQTL 4.46e-01 -0.0704 0.0923 0.304 NK_CD56bright L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 6.30e-01 -0.0464 0.0961 0.304 NK_CD56bright L2
ENSG00000162607 USP1 737569 sc-eQTL 2.51e-01 -0.114 0.0989 0.304 NK_CD56bright L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 8.65e-01 0.0161 0.0949 0.304 NK_CD56bright L2
ENSG00000079739 PGM1 -419545 sc-eQTL 3.14e-01 -0.0754 0.0747 0.308 NK_CD56dim L2
ENSG00000088035 ALG6 -193709 sc-eQTL 2.47e-01 0.11 0.0947 0.308 NK_CD56dim L2
ENSG00000116641 DOCK7 485480 sc-eQTL 3.16e-01 0.0828 0.0825 0.308 NK_CD56dim L2
ENSG00000125703 ATG4C 389734 sc-eQTL 1.90e-01 -0.11 0.0837 0.308 NK_CD56dim L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.49e-01 -0.0894 0.0954 0.308 NK_CD56dim L2
ENSG00000162607 USP1 737569 sc-eQTL 9.76e-01 -0.00284 0.0927 0.308 NK_CD56dim L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 6.78e-01 -0.0428 0.103 0.308 NK_CD56dim L2
ENSG00000079739 PGM1 -419545 sc-eQTL 2.04e-01 0.13 0.102 0.304 NK_HLA L2
ENSG00000088035 ALG6 -193709 sc-eQTL 1.80e-01 -0.142 0.105 0.304 NK_HLA L2
ENSG00000116641 DOCK7 485480 sc-eQTL 9.72e-01 -0.00283 0.0809 0.304 NK_HLA L2
ENSG00000125703 ATG4C 389734 sc-eQTL 5.49e-01 -0.0565 0.094 0.304 NK_HLA L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 9.25e-01 0.00932 0.0988 0.304 NK_HLA L2
ENSG00000162607 USP1 737569 sc-eQTL 6.94e-02 -0.187 0.103 0.304 NK_HLA L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 7.95e-01 -0.0244 0.0941 0.304 NK_HLA L2
ENSG00000079739 PGM1 -419545 sc-eQTL 5.90e-01 -0.0435 0.0806 0.308 NK_cytokine L2
ENSG00000088035 ALG6 -193709 sc-eQTL 9.40e-01 0.00692 0.0911 0.308 NK_cytokine L2
ENSG00000116641 DOCK7 485480 sc-eQTL 4.53e-01 -0.0634 0.0843 0.308 NK_cytokine L2
ENSG00000125703 ATG4C 389734 sc-eQTL 1.54e-01 -0.123 0.0859 0.308 NK_cytokine L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 6.70e-01 0.0382 0.0894 0.308 NK_cytokine L2
ENSG00000162607 USP1 737569 sc-eQTL 9.15e-01 -0.0101 0.094 0.308 NK_cytokine L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.22e-01 0.0611 0.0952 0.308 NK_cytokine L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.26e-01 0.171 0.111 0.33 PB L2
ENSG00000088035 ALG6 -193709 sc-eQTL 5.91e-01 -0.0635 0.118 0.33 PB L2
ENSG00000116641 DOCK7 485480 sc-eQTL 5.53e-01 0.075 0.126 0.33 PB L2
ENSG00000125703 ATG4C 389734 sc-eQTL 5.47e-02 -0.21 0.108 0.33 PB L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 4.54e-01 -0.0823 0.109 0.33 PB L2
ENSG00000162607 USP1 737569 sc-eQTL 3.57e-01 -0.101 0.109 0.33 PB L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.15e-01 0.0786 0.12 0.33 PB L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.60e-01 0.121 0.0858 0.315 Pro_T L2
ENSG00000088035 ALG6 -193709 sc-eQTL 4.05e-01 0.073 0.0875 0.315 Pro_T L2
ENSG00000116641 DOCK7 485480 sc-eQTL 3.13e-01 0.0888 0.0877 0.315 Pro_T L2
ENSG00000125703 ATG4C 389734 sc-eQTL 8.08e-01 -0.0187 0.077 0.315 Pro_T L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.73e-01 -0.0846 0.077 0.315 Pro_T L2
ENSG00000162607 USP1 737569 sc-eQTL 3.46e-01 -0.0501 0.053 0.315 Pro_T L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 9.85e-01 0.00164 0.0897 0.315 Pro_T L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.81e-01 0.122 0.0908 0.312 Treg L2
ENSG00000088035 ALG6 -193709 sc-eQTL 9.10e-01 0.011 0.0975 0.312 Treg L2
ENSG00000116641 DOCK7 485480 sc-eQTL 6.28e-01 0.0434 0.0895 0.312 Treg L2
ENSG00000125703 ATG4C 389734 sc-eQTL 7.05e-01 0.0346 0.0914 0.312 Treg L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.79e-01 0.0843 0.0955 0.312 Treg L2
ENSG00000162607 USP1 737569 sc-eQTL 2.80e-01 0.1 0.0923 0.312 Treg L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 3.09e-01 0.0932 0.0913 0.312 Treg L2
ENSG00000079739 PGM1 -419545 sc-eQTL 1.25e-01 -0.141 0.0913 0.302 cDC L2
ENSG00000088035 ALG6 -193709 sc-eQTL 2.25e-01 -0.113 0.0928 0.302 cDC L2
ENSG00000116641 DOCK7 485480 sc-eQTL 6.07e-01 0.0471 0.0914 0.302 cDC L2
ENSG00000125703 ATG4C 389734 sc-eQTL 7.71e-01 0.0232 0.0794 0.302 cDC L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 8.50e-01 0.019 0.101 0.302 cDC L2
ENSG00000162607 USP1 737569 sc-eQTL 2.02e-01 0.114 0.0892 0.302 cDC L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 9.95e-01 0.000551 0.0809 0.302 cDC L2
ENSG00000079739 PGM1 -419545 sc-eQTL 3.45e-01 0.0806 0.0852 0.312 cMono_IL1B L2
ENSG00000088035 ALG6 -193709 sc-eQTL 8.73e-01 0.0136 0.0855 0.312 cMono_IL1B L2
ENSG00000116641 DOCK7 485480 sc-eQTL 4.13e-01 -0.0739 0.09 0.312 cMono_IL1B L2
ENSG00000125703 ATG4C 389734 sc-eQTL 4.05e-01 -0.0529 0.0633 0.312 cMono_IL1B L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 6.73e-01 -0.0379 0.0898 0.312 cMono_IL1B L2
ENSG00000162607 USP1 737569 sc-eQTL 7.39e-02 0.141 0.0786 0.312 cMono_IL1B L2
ENSG00000240563 L1TD1 979017 sc-eQTL 3.94e-01 -0.0678 0.0794 0.312 cMono_IL1B L2
ENSG00000079739 PGM1 -419545 sc-eQTL 9.30e-01 0.00827 0.0946 0.312 cMono_S100A L2
ENSG00000088035 ALG6 -193709 sc-eQTL 9.16e-02 -0.161 0.0953 0.312 cMono_S100A L2
ENSG00000116641 DOCK7 485480 sc-eQTL 3.50e-01 0.0831 0.0887 0.312 cMono_S100A L2
ENSG00000125703 ATG4C 389734 sc-eQTL 4.15e-01 0.0628 0.0769 0.312 cMono_S100A L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 2.31e-01 0.104 0.0866 0.312 cMono_S100A L2
ENSG00000162607 USP1 737569 sc-eQTL 8.96e-01 0.0116 0.0894 0.312 cMono_S100A L2
ENSG00000240563 L1TD1 979017 sc-eQTL 1.88e-01 -0.0978 0.0741 0.312 cMono_S100A L2
ENSG00000079739 PGM1 -419545 sc-eQTL 6.64e-01 0.0471 0.108 0.288 gdT L2
ENSG00000088035 ALG6 -193709 sc-eQTL 3.04e-02 -0.248 0.113 0.288 gdT L2
ENSG00000116641 DOCK7 485480 sc-eQTL 5.45e-01 -0.0686 0.113 0.288 gdT L2
ENSG00000125703 ATG4C 389734 sc-eQTL 7.44e-01 0.0354 0.108 0.288 gdT L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 9.45e-01 0.00792 0.115 0.288 gdT L2
ENSG00000162607 USP1 737569 sc-eQTL 2.23e-01 0.132 0.108 0.288 gdT L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 4.12e-04 0.391 0.108 0.288 gdT L2
ENSG00000079739 PGM1 -419545 sc-eQTL 2.63e-01 0.108 0.0962 0.307 intMono L2
ENSG00000088035 ALG6 -193709 sc-eQTL 7.56e-01 0.028 0.0899 0.307 intMono L2
ENSG00000116641 DOCK7 485480 sc-eQTL 6.74e-01 -0.0387 0.0918 0.307 intMono L2
ENSG00000125703 ATG4C 389734 sc-eQTL 2.96e-01 0.0916 0.0874 0.307 intMono L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 4.45e-01 0.0738 0.0964 0.307 intMono L2
ENSG00000162607 USP1 737569 sc-eQTL 1.11e-01 0.156 0.0976 0.307 intMono L2
ENSG00000240563 L1TD1 979017 sc-eQTL 9.65e-01 0.00316 0.0722 0.307 intMono L2
ENSG00000079739 PGM1 -419545 sc-eQTL 4.23e-01 -0.0687 0.0856 0.314 ncMono L2
ENSG00000088035 ALG6 -193709 sc-eQTL 6.70e-01 0.0402 0.0941 0.314 ncMono L2
ENSG00000116641 DOCK7 485480 sc-eQTL 6.64e-01 0.0403 0.0927 0.314 ncMono L2
ENSG00000125703 ATG4C 389734 sc-eQTL 2.10e-01 0.108 0.0862 0.314 ncMono L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 8.09e-01 0.0219 0.0906 0.314 ncMono L2
ENSG00000162607 USP1 737569 sc-eQTL 6.75e-01 -0.0389 0.0925 0.314 ncMono L2
ENSG00000240563 L1TD1 979017 sc-eQTL 4.62e-01 0.0483 0.0655 0.314 ncMono L2
ENSG00000079739 PGM1 -419545 sc-eQTL 4.69e-01 -0.078 0.107 0.314 pDC L2
ENSG00000088035 ALG6 -193709 sc-eQTL 8.96e-01 -0.0138 0.105 0.314 pDC L2
ENSG00000116641 DOCK7 485480 sc-eQTL 5.97e-01 -0.0567 0.107 0.314 pDC L2
ENSG00000125703 ATG4C 389734 sc-eQTL 3.85e-01 -0.0834 0.0958 0.314 pDC L2
ENSG00000142856 ITGB3BP -419855 sc-eQTL 6.17e-01 0.054 0.108 0.314 pDC L2
ENSG00000162607 USP1 737569 sc-eQTL 1.91e-01 0.143 0.109 0.314 pDC L2
ENSG00000203965 EFCAB7 -349506 sc-eQTL 5.27e-01 -0.0604 0.0953 0.314 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419545 sc-eQTL 3.58e-01 0.0834 0.0905 0.312 B_Memory LOneK1K
ENSG00000088035 ALG6 -193709 sc-eQTL 1.72e-01 0.137 0.0998 0.312 B_Memory LOneK1K
ENSG00000116641 DOCK7 485480 sc-eQTL 8.08e-01 0.0212 0.087 0.312 B_Memory LOneK1K
ENSG00000125703 ATG4C 389734 sc-eQTL 2.69e-01 0.0777 0.0701 0.312 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -419855 sc-eQTL 1.22e-01 0.143 0.0919 0.312 B_Memory LOneK1K
ENSG00000162607 USP1 737569 sc-eQTL 8.02e-01 0.0225 0.0897 0.312 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -349506 sc-eQTL 4.66e-01 0.0703 0.0962 0.312 B_Memory LOneK1K
ENSG00000079739 PGM1 -419545 sc-eQTL 2.47e-01 -0.109 0.0939 0.312 B_Naive LOneK1K
ENSG00000088035 ALG6 -193709 sc-eQTL 7.70e-01 -0.0284 0.097 0.312 B_Naive LOneK1K
ENSG00000116641 DOCK7 485480 sc-eQTL 8.47e-01 -0.0175 0.0906 0.312 B_Naive LOneK1K
ENSG00000125703 ATG4C 389734 sc-eQTL 7.34e-02 -0.123 0.0686 0.312 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -419855 sc-eQTL 3.91e-01 0.0839 0.0976 0.312 B_Naive LOneK1K
ENSG00000162607 USP1 737569 sc-eQTL 4.73e-01 0.0603 0.0839 0.312 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -349506 sc-eQTL 1.60e-01 0.138 0.0978 0.312 B_Naive LOneK1K
ENSG00000079739 PGM1 -419545 sc-eQTL 6.96e-01 0.0343 0.0875 0.312 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -193709 sc-eQTL 3.89e-01 -0.0731 0.0846 0.312 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 485480 sc-eQTL 8.17e-01 -0.0198 0.0854 0.312 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 389734 sc-eQTL 8.87e-01 -0.00837 0.059 0.312 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -419855 sc-eQTL 8.49e-01 0.0166 0.0873 0.312 CD14_Mono LOneK1K
ENSG00000162607 USP1 737569 sc-eQTL 2.19e-01 0.0915 0.0743 0.312 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 979017 sc-eQTL 2.15e-01 -0.1 0.0806 0.312 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -419545 sc-eQTL 3.01e-01 0.0862 0.0831 0.312 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -193709 sc-eQTL 9.28e-01 0.00857 0.0946 0.312 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 485480 sc-eQTL 7.51e-01 0.0298 0.0935 0.312 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 389734 sc-eQTL 2.15e-01 0.0988 0.0795 0.312 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -419855 sc-eQTL 7.61e-01 0.0282 0.0926 0.312 CD16_Mono LOneK1K
ENSG00000162607 USP1 737569 sc-eQTL 6.91e-01 0.0346 0.087 0.312 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 979017 sc-eQTL 8.87e-01 0.00842 0.0594 0.312 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -419545 sc-eQTL 8.77e-01 -0.0113 0.0731 0.308 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -193709 sc-eQTL 8.06e-01 0.0215 0.0877 0.308 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 485480 sc-eQTL 7.57e-01 0.0243 0.0786 0.308 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 389734 sc-eQTL 2.64e-01 -0.0876 0.0782 0.308 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -419855 sc-eQTL 5.59e-01 -0.0544 0.0929 0.308 NK_CD56dim LOneK1K
ENSG00000162607 USP1 737569 sc-eQTL 7.82e-01 0.0234 0.0844 0.308 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -349506 sc-eQTL 8.25e-01 0.0227 0.103 0.308 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -419545 eQTL 0.0504 -0.0382 0.0195 0.00469 0.0 0.282

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -373216 1.21e-06 8.36e-07 3.06e-07 4.14e-07 1.64e-07 3.24e-07 6.87e-07 3.3e-07 8.46e-07 2.67e-07 1.07e-06 5.51e-07 1.05e-06 1.97e-07 4.15e-07 5.02e-07 7.62e-07 5.31e-07 4e-07 3.72e-07 2.93e-07 6.91e-07 5.66e-07 4.09e-07 1.3e-06 2.94e-07 5.49e-07 4.11e-07 7e-07 8.43e-07 4.39e-07 3.85e-08 1.48e-07 2.77e-07 3.37e-07 3.38e-07 3.12e-07 1.5e-07 1.1e-07 9.55e-09 1.98e-07 7.45e-07 6.64e-08 1.25e-08 1.7e-07 5.38e-08 1.9e-07 8.35e-08 8.61e-08
ENSG00000230798 \N -150575 3.64e-06 3.49e-06 8.24e-07 1.96e-06 1.12e-06 8.02e-07 2.54e-06 1.01e-06 3.03e-06 1.63e-06 3.21e-06 2.45e-06 4.9e-06 1.24e-06 1.07e-06 2.42e-06 1.8e-06 2.38e-06 1.32e-06 9.15e-07 2.12e-06 3.79e-06 3.24e-06 1.71e-06 4.32e-06 1.33e-06 1.84e-06 1.45e-06 3.77e-06 3.08e-06 2.04e-06 5.42e-07 7.93e-07 1.73e-06 1.87e-06 9.97e-07 9.24e-07 4.59e-07 1.28e-06 3.63e-07 5.82e-07 3.88e-06 3.76e-07 1.79e-07 4.86e-07 3.75e-07 7.91e-07 4.41e-07 3.29e-07