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Genes within 1Mb (chr1:63173418:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419993 sc-eQTL 7.66e-01 0.0238 0.0798 0.308 B L1
ENSG00000088035 ALG6 -194157 sc-eQTL 5.28e-01 0.0522 0.0826 0.308 B L1
ENSG00000116641 DOCK7 485032 sc-eQTL 8.06e-01 0.0203 0.0827 0.308 B L1
ENSG00000125703 ATG4C 389286 sc-eQTL 2.77e-01 0.0625 0.0573 0.308 B L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.22e-02 -0.154 0.0908 0.308 B L1
ENSG00000162607 USP1 737121 sc-eQTL 4.88e-01 -0.0551 0.0793 0.308 B L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 7.21e-02 -0.168 0.093 0.308 B L1
ENSG00000079739 PGM1 -419993 sc-eQTL 5.16e-01 0.0454 0.0697 0.308 CD4T L1
ENSG00000088035 ALG6 -194157 sc-eQTL 8.20e-01 -0.0175 0.077 0.308 CD4T L1
ENSG00000116641 DOCK7 485032 sc-eQTL 9.01e-01 0.00975 0.078 0.308 CD4T L1
ENSG00000125703 ATG4C 389286 sc-eQTL 7.11e-01 0.0233 0.0629 0.308 CD4T L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.10e-01 -0.142 0.0888 0.308 CD4T L1
ENSG00000162607 USP1 737121 sc-eQTL 5.78e-01 -0.034 0.061 0.308 CD4T L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 7.14e-01 -0.0295 0.0802 0.308 CD4T L1
ENSG00000079739 PGM1 -419993 sc-eQTL 7.36e-01 -0.0257 0.0761 0.308 CD8T L1
ENSG00000088035 ALG6 -194157 sc-eQTL 7.88e-01 -0.0226 0.0839 0.308 CD8T L1
ENSG00000116641 DOCK7 485032 sc-eQTL 9.83e-01 0.00184 0.085 0.308 CD8T L1
ENSG00000125703 ATG4C 389286 sc-eQTL 1.67e-01 0.111 0.0804 0.308 CD8T L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 4.60e-02 -0.18 0.0895 0.308 CD8T L1
ENSG00000162607 USP1 737121 sc-eQTL 8.58e-01 -0.0126 0.0703 0.308 CD8T L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 1.74e-01 -0.122 0.0896 0.308 CD8T L1
ENSG00000079739 PGM1 -419993 sc-eQTL 1.92e-01 -0.108 0.0822 0.313 DC L1
ENSG00000088035 ALG6 -194157 sc-eQTL 6.15e-01 0.0429 0.0852 0.313 DC L1
ENSG00000116641 DOCK7 485032 sc-eQTL 4.51e-01 -0.0658 0.0872 0.313 DC L1
ENSG00000125703 ATG4C 389286 sc-eQTL 5.03e-02 -0.133 0.0677 0.313 DC L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 7.96e-01 0.0248 0.0955 0.313 DC L1
ENSG00000162607 USP1 737121 sc-eQTL 1.01e-01 -0.136 0.0828 0.313 DC L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.73e-01 -0.0133 0.0831 0.313 DC L1
ENSG00000079739 PGM1 -419993 sc-eQTL 8.68e-01 -0.0136 0.0818 0.308 Mono L1
ENSG00000088035 ALG6 -194157 sc-eQTL 9.52e-02 0.142 0.0848 0.308 Mono L1
ENSG00000116641 DOCK7 485032 sc-eQTL 2.32e-01 -0.0987 0.0823 0.308 Mono L1
ENSG00000125703 ATG4C 389286 sc-eQTL 5.21e-01 -0.0358 0.0558 0.308 Mono L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.52e-02 -0.147 0.0876 0.308 Mono L1
ENSG00000162607 USP1 737121 sc-eQTL 6.33e-01 -0.0346 0.0724 0.308 Mono L1
ENSG00000240563 L1TD1 978569 sc-eQTL 7.32e-01 -0.0232 0.0676 0.308 Mono L1
ENSG00000079739 PGM1 -419993 sc-eQTL 7.21e-01 0.0255 0.0715 0.309 NK L1
ENSG00000088035 ALG6 -194157 sc-eQTL 7.50e-01 0.0267 0.0838 0.309 NK L1
ENSG00000116641 DOCK7 485032 sc-eQTL 9.35e-01 -0.00564 0.0691 0.309 NK L1
ENSG00000125703 ATG4C 389286 sc-eQTL 3.66e-01 0.067 0.074 0.309 NK L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.31e-01 -0.11 0.0919 0.309 NK L1
ENSG00000162607 USP1 737121 sc-eQTL 6.42e-01 -0.0383 0.0823 0.309 NK L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.05e-01 -0.0247 0.1 0.309 NK L1
ENSG00000079739 PGM1 -419993 sc-eQTL 4.34e-01 0.0627 0.08 0.308 Other_T L1
ENSG00000088035 ALG6 -194157 sc-eQTL 2.12e-01 0.1 0.0802 0.308 Other_T L1
ENSG00000116641 DOCK7 485032 sc-eQTL 2.94e-01 0.0861 0.0819 0.308 Other_T L1
ENSG00000125703 ATG4C 389286 sc-eQTL 9.33e-02 0.119 0.0706 0.308 Other_T L1
ENSG00000142856 ITGB3BP -420303 sc-eQTL 5.75e-01 0.0354 0.063 0.308 Other_T L1
ENSG00000162607 USP1 737121 sc-eQTL 4.71e-01 0.0394 0.0546 0.308 Other_T L1
ENSG00000203965 EFCAB7 -349954 sc-eQTL 7.67e-01 0.0288 0.0973 0.308 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419993 sc-eQTL 9.39e-01 -0.00791 0.103 0.304 B_Activated L2
ENSG00000088035 ALG6 -194157 sc-eQTL 5.60e-01 -0.0577 0.0987 0.304 B_Activated L2
ENSG00000116641 DOCK7 485032 sc-eQTL 3.54e-01 -0.0853 0.0918 0.304 B_Activated L2
ENSG00000125703 ATG4C 389286 sc-eQTL 8.28e-01 0.021 0.0968 0.304 B_Activated L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.16e-02 -0.237 0.0928 0.304 B_Activated L2
ENSG00000162607 USP1 737121 sc-eQTL 1.89e-01 -0.134 0.102 0.304 B_Activated L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.51e-01 -0.103 0.0892 0.304 B_Activated L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.47e-01 -0.00637 0.0952 0.307 B_Intermediate L2
ENSG00000088035 ALG6 -194157 sc-eQTL 3.91e-01 -0.0831 0.0965 0.307 B_Intermediate L2
ENSG00000116641 DOCK7 485032 sc-eQTL 4.29e-01 0.073 0.0922 0.307 B_Intermediate L2
ENSG00000125703 ATG4C 389286 sc-eQTL 4.45e-01 -0.0598 0.0781 0.307 B_Intermediate L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.32e-01 -0.14 0.0926 0.307 B_Intermediate L2
ENSG00000162607 USP1 737121 sc-eQTL 4.27e-01 -0.0738 0.0929 0.307 B_Intermediate L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.31e-01 -0.0197 0.0923 0.307 B_Intermediate L2
ENSG00000079739 PGM1 -419993 sc-eQTL 3.91e-01 0.0805 0.0937 0.31 B_Memory L2
ENSG00000088035 ALG6 -194157 sc-eQTL 7.27e-02 0.171 0.0947 0.31 B_Memory L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.64e-01 0.039 0.0895 0.31 B_Memory L2
ENSG00000125703 ATG4C 389286 sc-eQTL 4.65e-01 -0.0622 0.085 0.31 B_Memory L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.16e-01 -0.12 0.097 0.31 B_Memory L2
ENSG00000162607 USP1 737121 sc-eQTL 4.68e-01 0.0713 0.0981 0.31 B_Memory L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 5.63e-01 -0.056 0.0966 0.31 B_Memory L2
ENSG00000079739 PGM1 -419993 sc-eQTL 3.03e-01 0.0979 0.0949 0.308 B_Naive1 L2
ENSG00000088035 ALG6 -194157 sc-eQTL 6.22e-01 0.0471 0.0954 0.308 B_Naive1 L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.17e-01 -0.0458 0.0914 0.308 B_Naive1 L2
ENSG00000125703 ATG4C 389286 sc-eQTL 6.08e-01 0.0361 0.0704 0.308 B_Naive1 L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.39e-02 -0.21 0.0924 0.308 B_Naive1 L2
ENSG00000162607 USP1 737121 sc-eQTL 7.81e-01 -0.0229 0.0822 0.308 B_Naive1 L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 7.18e-02 -0.179 0.099 0.308 B_Naive1 L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.23e-01 -0.00908 0.0937 0.309 B_Naive2 L2
ENSG00000088035 ALG6 -194157 sc-eQTL 9.89e-01 -0.00136 0.0977 0.309 B_Naive2 L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.67e-01 -0.0404 0.0939 0.309 B_Naive2 L2
ENSG00000125703 ATG4C 389286 sc-eQTL 8.32e-01 0.0192 0.0904 0.309 B_Naive2 L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.89e-01 0.00132 0.0981 0.309 B_Naive2 L2
ENSG00000162607 USP1 737121 sc-eQTL 5.86e-01 -0.0509 0.0933 0.309 B_Naive2 L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.04e-01 0.124 0.0972 0.309 B_Naive2 L2
ENSG00000079739 PGM1 -419993 sc-eQTL 6.03e-01 -0.0485 0.0931 0.305 CD4_CTL L2
ENSG00000088035 ALG6 -194157 sc-eQTL 6.89e-01 0.0394 0.0984 0.305 CD4_CTL L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.85e-01 -0.035 0.0861 0.305 CD4_CTL L2
ENSG00000125703 ATG4C 389286 sc-eQTL 2.63e-01 -0.0997 0.0888 0.305 CD4_CTL L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 5.15e-01 -0.062 0.0952 0.305 CD4_CTL L2
ENSG00000162607 USP1 737121 sc-eQTL 2.06e-01 -0.114 0.0903 0.305 CD4_CTL L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.84e-01 -0.0132 0.0905 0.305 CD4_CTL L2
ENSG00000079739 PGM1 -419993 sc-eQTL 3.23e-01 0.0775 0.0782 0.308 CD4_Naive L2
ENSG00000088035 ALG6 -194157 sc-eQTL 7.42e-01 -0.0281 0.0851 0.308 CD4_Naive L2
ENSG00000116641 DOCK7 485032 sc-eQTL 2.86e-01 0.0892 0.0834 0.308 CD4_Naive L2
ENSG00000125703 ATG4C 389286 sc-eQTL 3.99e-01 0.0624 0.0738 0.308 CD4_Naive L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.05e-01 -0.0926 0.0901 0.308 CD4_Naive L2
ENSG00000162607 USP1 737121 sc-eQTL 8.68e-01 0.0115 0.069 0.308 CD4_Naive L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.71e-01 -0.0146 0.0897 0.308 CD4_Naive L2
ENSG00000079739 PGM1 -419993 sc-eQTL 5.66e-01 0.0461 0.0803 0.308 CD4_TCM L2
ENSG00000088035 ALG6 -194157 sc-eQTL 8.84e-01 -0.0136 0.0933 0.308 CD4_TCM L2
ENSG00000116641 DOCK7 485032 sc-eQTL 1.31e-01 -0.125 0.0822 0.308 CD4_TCM L2
ENSG00000125703 ATG4C 389286 sc-eQTL 9.78e-01 0.00222 0.0805 0.308 CD4_TCM L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.98e-01 -0.122 0.0945 0.308 CD4_TCM L2
ENSG00000162607 USP1 737121 sc-eQTL 3.31e-01 -0.0757 0.0776 0.308 CD4_TCM L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.39e-01 -0.108 0.0915 0.308 CD4_TCM L2
ENSG00000079739 PGM1 -419993 sc-eQTL 8.32e-01 -0.0199 0.0938 0.308 CD4_TEM L2
ENSG00000088035 ALG6 -194157 sc-eQTL 2.32e-01 0.113 0.094 0.308 CD4_TEM L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.66e-01 -0.0397 0.0919 0.308 CD4_TEM L2
ENSG00000125703 ATG4C 389286 sc-eQTL 2.77e-02 0.196 0.0883 0.308 CD4_TEM L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.64e-02 -0.192 0.0912 0.308 CD4_TEM L2
ENSG00000162607 USP1 737121 sc-eQTL 2.09e-01 -0.11 0.087 0.308 CD4_TEM L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.55e-01 -0.0175 0.0955 0.308 CD4_TEM L2
ENSG00000079739 PGM1 -419993 sc-eQTL 2.39e-01 -0.101 0.0852 0.308 CD8_CTL L2
ENSG00000088035 ALG6 -194157 sc-eQTL 8.58e-01 -0.0163 0.0908 0.308 CD8_CTL L2
ENSG00000116641 DOCK7 485032 sc-eQTL 7.41e-01 0.0285 0.0862 0.308 CD8_CTL L2
ENSG00000125703 ATG4C 389286 sc-eQTL 3.43e-01 0.0871 0.0916 0.308 CD8_CTL L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 8.62e-01 -0.0166 0.0954 0.308 CD8_CTL L2
ENSG00000162607 USP1 737121 sc-eQTL 2.48e-01 0.0987 0.0852 0.308 CD8_CTL L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 7.78e-01 -0.0276 0.0977 0.308 CD8_CTL L2
ENSG00000079739 PGM1 -419993 sc-eQTL 6.22e-01 -0.0434 0.0879 0.308 CD8_Naive L2
ENSG00000088035 ALG6 -194157 sc-eQTL 5.05e-01 0.0607 0.091 0.308 CD8_Naive L2
ENSG00000116641 DOCK7 485032 sc-eQTL 7.34e-01 -0.032 0.0941 0.308 CD8_Naive L2
ENSG00000125703 ATG4C 389286 sc-eQTL 6.75e-01 -0.0379 0.0903 0.308 CD8_Naive L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.04e-02 -0.233 0.0901 0.308 CD8_Naive L2
ENSG00000162607 USP1 737121 sc-eQTL 5.30e-01 -0.0486 0.0773 0.308 CD8_Naive L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.31e-02 -0.195 0.0852 0.308 CD8_Naive L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.08e-01 -0.011 0.0945 0.306 CD8_TCM L2
ENSG00000088035 ALG6 -194157 sc-eQTL 3.41e-01 -0.0911 0.0954 0.306 CD8_TCM L2
ENSG00000116641 DOCK7 485032 sc-eQTL 9.71e-02 0.155 0.0927 0.306 CD8_TCM L2
ENSG00000125703 ATG4C 389286 sc-eQTL 5.11e-01 0.0629 0.0954 0.306 CD8_TCM L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.20e-01 -0.144 0.0922 0.306 CD8_TCM L2
ENSG00000162607 USP1 737121 sc-eQTL 4.01e-01 -0.075 0.0891 0.306 CD8_TCM L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 9.26e-01 -0.00874 0.0946 0.306 CD8_TCM L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.39e-01 0.0074 0.0969 0.308 CD8_TEM L2
ENSG00000088035 ALG6 -194157 sc-eQTL 5.56e-01 0.0573 0.0972 0.308 CD8_TEM L2
ENSG00000116641 DOCK7 485032 sc-eQTL 8.74e-01 0.015 0.0943 0.308 CD8_TEM L2
ENSG00000125703 ATG4C 389286 sc-eQTL 9.81e-01 0.00214 0.0906 0.308 CD8_TEM L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 5.97e-01 0.0519 0.098 0.308 CD8_TEM L2
ENSG00000162607 USP1 737121 sc-eQTL 9.63e-01 0.00437 0.0936 0.308 CD8_TEM L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.81e-01 0.103 0.0949 0.308 CD8_TEM L2
ENSG00000079739 PGM1 -419993 sc-eQTL 2.36e-01 0.109 0.0915 0.305 MAIT L2
ENSG00000088035 ALG6 -194157 sc-eQTL 2.92e-01 0.0959 0.0907 0.305 MAIT L2
ENSG00000116641 DOCK7 485032 sc-eQTL 2.20e-01 0.107 0.0868 0.305 MAIT L2
ENSG00000125703 ATG4C 389286 sc-eQTL 1.13e-01 0.145 0.0913 0.305 MAIT L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 7.02e-01 -0.0352 0.092 0.305 MAIT L2
ENSG00000162607 USP1 737121 sc-eQTL 9.16e-01 0.00961 0.0913 0.305 MAIT L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 1.42e-01 0.139 0.0942 0.305 MAIT L2
ENSG00000079739 PGM1 -419993 sc-eQTL 6.34e-01 -0.0442 0.0927 0.313 NK_CD56bright L2
ENSG00000088035 ALG6 -194157 sc-eQTL 8.91e-01 -0.013 0.0951 0.313 NK_CD56bright L2
ENSG00000116641 DOCK7 485032 sc-eQTL 9.34e-01 -0.0068 0.0824 0.313 NK_CD56bright L2
ENSG00000125703 ATG4C 389286 sc-eQTL 4.08e-01 0.0761 0.0919 0.313 NK_CD56bright L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.94e-01 -0.101 0.0956 0.313 NK_CD56bright L2
ENSG00000162607 USP1 737121 sc-eQTL 1.21e-01 -0.153 0.0982 0.313 NK_CD56bright L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 4.21e-01 0.076 0.0944 0.313 NK_CD56bright L2
ENSG00000079739 PGM1 -419993 sc-eQTL 2.91e-01 0.0783 0.0741 0.31 NK_CD56dim L2
ENSG00000088035 ALG6 -194157 sc-eQTL 9.32e-01 0.00806 0.0942 0.31 NK_CD56dim L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.51e-01 0.0372 0.0819 0.31 NK_CD56dim L2
ENSG00000125703 ATG4C 389286 sc-eQTL 1.14e-01 0.132 0.0828 0.31 NK_CD56dim L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.91e-01 -0.0812 0.0946 0.31 NK_CD56dim L2
ENSG00000162607 USP1 737121 sc-eQTL 7.52e-01 -0.0291 0.0919 0.31 NK_CD56dim L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 3.67e-01 -0.0924 0.102 0.31 NK_CD56dim L2
ENSG00000079739 PGM1 -419993 sc-eQTL 4.79e-01 -0.0706 0.0997 0.313 NK_HLA L2
ENSG00000088035 ALG6 -194157 sc-eQTL 7.96e-01 0.0267 0.103 0.313 NK_HLA L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.92e-01 0.0313 0.0791 0.313 NK_HLA L2
ENSG00000125703 ATG4C 389286 sc-eQTL 5.42e-01 -0.0562 0.0919 0.313 NK_HLA L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.73e-01 -0.086 0.0964 0.313 NK_HLA L2
ENSG00000162607 USP1 737121 sc-eQTL 4.27e-01 0.0804 0.101 0.313 NK_HLA L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 8.20e-01 0.0209 0.092 0.313 NK_HLA L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.67e-02 0.132 0.0789 0.31 NK_cytokine L2
ENSG00000088035 ALG6 -194157 sc-eQTL 8.30e-01 0.0193 0.0897 0.31 NK_cytokine L2
ENSG00000116641 DOCK7 485032 sc-eQTL 8.64e-01 0.0142 0.0831 0.31 NK_cytokine L2
ENSG00000125703 ATG4C 389286 sc-eQTL 3.58e-01 0.0782 0.0849 0.31 NK_cytokine L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.41e-02 -0.147 0.0875 0.31 NK_cytokine L2
ENSG00000162607 USP1 737121 sc-eQTL 2.87e-01 0.0986 0.0923 0.31 NK_cytokine L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 5.97e-01 0.0496 0.0938 0.31 NK_cytokine L2
ENSG00000079739 PGM1 -419993 sc-eQTL 5.45e-01 -0.0659 0.109 0.315 PB L2
ENSG00000088035 ALG6 -194157 sc-eQTL 1.47e-02 0.276 0.111 0.315 PB L2
ENSG00000116641 DOCK7 485032 sc-eQTL 9.17e-01 0.0128 0.122 0.315 PB L2
ENSG00000125703 ATG4C 389286 sc-eQTL 1.61e-01 0.149 0.106 0.315 PB L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.54e-01 -0.0061 0.106 0.315 PB L2
ENSG00000162607 USP1 737121 sc-eQTL 5.72e-01 0.0599 0.106 0.315 PB L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 6.73e-01 -0.0494 0.117 0.315 PB L2
ENSG00000079739 PGM1 -419993 sc-eQTL 4.78e-01 -0.0607 0.0853 0.307 Pro_T L2
ENSG00000088035 ALG6 -194157 sc-eQTL 4.41e-01 0.067 0.0868 0.307 Pro_T L2
ENSG00000116641 DOCK7 485032 sc-eQTL 7.70e-01 -0.0255 0.0872 0.307 Pro_T L2
ENSG00000125703 ATG4C 389286 sc-eQTL 3.94e-01 -0.0652 0.0762 0.307 Pro_T L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 8.61e-01 0.0134 0.0766 0.307 Pro_T L2
ENSG00000162607 USP1 737121 sc-eQTL 8.01e-01 -0.0133 0.0526 0.307 Pro_T L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 5.37e-01 -0.055 0.0889 0.307 Pro_T L2
ENSG00000079739 PGM1 -419993 sc-eQTL 2.11e-01 -0.113 0.09 0.308 Treg L2
ENSG00000088035 ALG6 -194157 sc-eQTL 5.14e-01 -0.0632 0.0965 0.308 Treg L2
ENSG00000116641 DOCK7 485032 sc-eQTL 7.68e-01 -0.0263 0.0887 0.308 Treg L2
ENSG00000125703 ATG4C 389286 sc-eQTL 3.82e-01 0.0793 0.0905 0.308 Treg L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 6.64e-01 -0.0412 0.0948 0.308 Treg L2
ENSG00000162607 USP1 737121 sc-eQTL 4.99e-01 -0.062 0.0917 0.308 Treg L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.15e-02 -0.208 0.0896 0.308 Treg L2
ENSG00000079739 PGM1 -419993 sc-eQTL 9.22e-01 -0.00888 0.0904 0.307 cDC L2
ENSG00000088035 ALG6 -194157 sc-eQTL 4.52e-01 -0.0691 0.0916 0.307 cDC L2
ENSG00000116641 DOCK7 485032 sc-eQTL 7.00e-02 -0.163 0.0892 0.307 cDC L2
ENSG00000125703 ATG4C 389286 sc-eQTL 6.54e-02 -0.144 0.0774 0.307 cDC L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.58e-01 0.112 0.0987 0.307 cDC L2
ENSG00000162607 USP1 737121 sc-eQTL 3.06e-01 -0.0903 0.0879 0.307 cDC L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 6.99e-01 -0.0308 0.0796 0.307 cDC L2
ENSG00000079739 PGM1 -419993 sc-eQTL 6.56e-01 0.0378 0.0847 0.308 cMono_IL1B L2
ENSG00000088035 ALG6 -194157 sc-eQTL 2.45e-01 0.0986 0.0846 0.308 cMono_IL1B L2
ENSG00000116641 DOCK7 485032 sc-eQTL 9.49e-01 0.00574 0.0894 0.308 cMono_IL1B L2
ENSG00000125703 ATG4C 389286 sc-eQTL 5.19e-01 0.0406 0.0628 0.308 cMono_IL1B L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 4.59e-01 -0.066 0.089 0.308 cMono_IL1B L2
ENSG00000162607 USP1 737121 sc-eQTL 4.68e-01 -0.0571 0.0785 0.308 cMono_IL1B L2
ENSG00000240563 L1TD1 978569 sc-eQTL 3.19e-01 -0.0787 0.0788 0.308 cMono_IL1B L2
ENSG00000079739 PGM1 -419993 sc-eQTL 6.72e-01 -0.0399 0.0942 0.308 cMono_S100A L2
ENSG00000088035 ALG6 -194157 sc-eQTL 7.65e-01 0.0285 0.0955 0.308 cMono_S100A L2
ENSG00000116641 DOCK7 485032 sc-eQTL 8.83e-01 -0.0131 0.0885 0.308 cMono_S100A L2
ENSG00000125703 ATG4C 389286 sc-eQTL 9.46e-02 -0.128 0.0761 0.308 cMono_S100A L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.84e-02 -0.178 0.0856 0.308 cMono_S100A L2
ENSG00000162607 USP1 737121 sc-eQTL 2.84e-01 -0.0953 0.0888 0.308 cMono_S100A L2
ENSG00000240563 L1TD1 978569 sc-eQTL 9.51e-01 0.00452 0.074 0.308 cMono_S100A L2
ENSG00000079739 PGM1 -419993 sc-eQTL 2.87e-01 0.113 0.105 0.306 gdT L2
ENSG00000088035 ALG6 -194157 sc-eQTL 2.30e-01 0.135 0.112 0.306 gdT L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.06e-01 0.0573 0.111 0.306 gdT L2
ENSG00000125703 ATG4C 389286 sc-eQTL 1.55e-01 0.15 0.105 0.306 gdT L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.33e-01 0.168 0.111 0.306 gdT L2
ENSG00000162607 USP1 737121 sc-eQTL 7.22e-01 0.0379 0.106 0.306 gdT L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 3.24e-01 -0.109 0.11 0.306 gdT L2
ENSG00000079739 PGM1 -419993 sc-eQTL 8.61e-01 -0.0167 0.0954 0.311 intMono L2
ENSG00000088035 ALG6 -194157 sc-eQTL 4.97e-01 0.0603 0.0887 0.311 intMono L2
ENSG00000116641 DOCK7 485032 sc-eQTL 6.86e-01 -0.0367 0.0907 0.311 intMono L2
ENSG00000125703 ATG4C 389286 sc-eQTL 5.24e-01 0.0553 0.0865 0.311 intMono L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.83e-01 -0.102 0.0951 0.311 intMono L2
ENSG00000162607 USP1 737121 sc-eQTL 8.42e-02 -0.167 0.0963 0.311 intMono L2
ENSG00000240563 L1TD1 978569 sc-eQTL 3.30e-01 0.0695 0.0712 0.311 intMono L2
ENSG00000079739 PGM1 -419993 sc-eQTL 7.06e-01 -0.0319 0.0844 0.312 ncMono L2
ENSG00000088035 ALG6 -194157 sc-eQTL 3.48e-01 0.087 0.0926 0.312 ncMono L2
ENSG00000116641 DOCK7 485032 sc-eQTL 3.01e-01 -0.0945 0.0911 0.312 ncMono L2
ENSG00000125703 ATG4C 389286 sc-eQTL 4.17e-01 -0.0693 0.0851 0.312 ncMono L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.46e-01 0.00603 0.0892 0.312 ncMono L2
ENSG00000162607 USP1 737121 sc-eQTL 4.31e-01 0.0718 0.091 0.312 ncMono L2
ENSG00000240563 L1TD1 978569 sc-eQTL 7.18e-01 -0.0234 0.0646 0.312 ncMono L2
ENSG00000079739 PGM1 -419993 sc-eQTL 7.73e-01 0.0309 0.107 0.28 pDC L2
ENSG00000088035 ALG6 -194157 sc-eQTL 4.40e-01 0.0803 0.104 0.28 pDC L2
ENSG00000116641 DOCK7 485032 sc-eQTL 8.30e-01 0.0228 0.106 0.28 pDC L2
ENSG00000125703 ATG4C 389286 sc-eQTL 9.14e-01 0.0103 0.0952 0.28 pDC L2
ENSG00000142856 ITGB3BP -420303 sc-eQTL 7.06e-01 -0.0404 0.107 0.28 pDC L2
ENSG00000162607 USP1 737121 sc-eQTL 4.75e-01 -0.078 0.109 0.28 pDC L2
ENSG00000203965 EFCAB7 -349954 sc-eQTL 2.67e-01 -0.105 0.0942 0.28 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -419993 sc-eQTL 4.51e-01 -0.0673 0.0891 0.308 B_Memory LOneK1K
ENSG00000088035 ALG6 -194157 sc-eQTL 9.94e-01 0.000697 0.0987 0.308 B_Memory LOneK1K
ENSG00000116641 DOCK7 485032 sc-eQTL 6.50e-01 0.0388 0.0856 0.308 B_Memory LOneK1K
ENSG00000125703 ATG4C 389286 sc-eQTL 3.67e-01 -0.0625 0.0691 0.308 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -420303 sc-eQTL 3.27e-02 -0.194 0.09 0.308 B_Memory LOneK1K
ENSG00000162607 USP1 737121 sc-eQTL 7.43e-01 -0.029 0.0883 0.308 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -349954 sc-eQTL 1.87e-01 -0.125 0.0944 0.308 B_Memory LOneK1K
ENSG00000079739 PGM1 -419993 sc-eQTL 4.62e-01 0.0681 0.0925 0.308 B_Naive LOneK1K
ENSG00000088035 ALG6 -194157 sc-eQTL 6.75e-01 0.0399 0.0953 0.308 B_Naive LOneK1K
ENSG00000116641 DOCK7 485032 sc-eQTL 4.59e-01 -0.0659 0.0889 0.308 B_Naive LOneK1K
ENSG00000125703 ATG4C 389286 sc-eQTL 5.97e-01 0.0359 0.0679 0.308 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -420303 sc-eQTL 1.18e-01 -0.15 0.0955 0.308 B_Naive LOneK1K
ENSG00000162607 USP1 737121 sc-eQTL 9.33e-01 0.00693 0.0825 0.308 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -349954 sc-eQTL 3.44e-01 -0.0914 0.0963 0.308 B_Naive LOneK1K
ENSG00000079739 PGM1 -419993 sc-eQTL 9.99e-01 -0.000126 0.0867 0.308 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -194157 sc-eQTL 1.73e-01 0.114 0.0835 0.308 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 485032 sc-eQTL 9.78e-01 -0.0023 0.0845 0.308 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 389286 sc-eQTL 4.17e-01 -0.0474 0.0583 0.308 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -420303 sc-eQTL 9.39e-02 -0.144 0.0858 0.308 CD14_Mono LOneK1K
ENSG00000162607 USP1 737121 sc-eQTL 2.53e-01 -0.0843 0.0736 0.308 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 978569 sc-eQTL 6.30e-01 -0.0386 0.08 0.308 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -419993 sc-eQTL 6.24e-01 -0.0402 0.0819 0.31 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -194157 sc-eQTL 3.58e-01 0.0857 0.0929 0.31 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 485032 sc-eQTL 1.85e-01 -0.122 0.0917 0.31 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 389286 sc-eQTL 4.43e-01 -0.0603 0.0784 0.31 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -420303 sc-eQTL 5.99e-01 -0.048 0.0911 0.31 CD16_Mono LOneK1K
ENSG00000162607 USP1 737121 sc-eQTL 6.85e-01 0.0347 0.0856 0.31 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 978569 sc-eQTL 7.68e-01 0.0173 0.0584 0.31 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -419993 sc-eQTL 6.57e-01 0.0323 0.0726 0.31 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -194157 sc-eQTL 6.47e-01 0.04 0.0871 0.31 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 485032 sc-eQTL 7.17e-01 0.0283 0.0781 0.31 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 389286 sc-eQTL 2.58e-01 0.0882 0.0777 0.31 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -420303 sc-eQTL 2.41e-01 -0.108 0.0921 0.31 NK_CD56dim LOneK1K
ENSG00000162607 USP1 737121 sc-eQTL 7.08e-01 0.0315 0.0838 0.31 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -349954 sc-eQTL 4.25e-01 -0.0815 0.102 0.31 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -419993 eQTL 0.000575 0.0654 0.0189 0.00164 0.0 0.302
ENSG00000142856 ITGB3BP -420303 eQTL 0.0459 -0.0623 0.0312 0.0 0.0 0.302

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina