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Genes within 1Mb (chr1:63171641:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -421770 sc-eQTL 8.24e-01 0.0184 0.0824 0.694 B L1
ENSG00000088035 ALG6 -195934 sc-eQTL 9.27e-01 0.0078 0.0854 0.694 B L1
ENSG00000116641 DOCK7 483255 sc-eQTL 5.27e-01 0.054 0.0853 0.694 B L1
ENSG00000125703 ATG4C 387509 sc-eQTL 2.30e-01 0.0713 0.0592 0.694 B L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.29e-01 -0.114 0.0942 0.694 B L1
ENSG00000162607 USP1 735344 sc-eQTL 1.99e-01 -0.105 0.0817 0.694 B L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 1.35e-01 -0.145 0.0963 0.694 B L1
ENSG00000079739 PGM1 -421770 sc-eQTL 5.24e-01 0.0442 0.0692 0.694 CD4T L1
ENSG00000088035 ALG6 -195934 sc-eQTL 9.84e-01 0.00157 0.0765 0.694 CD4T L1
ENSG00000116641 DOCK7 483255 sc-eQTL 5.69e-01 0.0441 0.0773 0.694 CD4T L1
ENSG00000125703 ATG4C 387509 sc-eQTL 2.48e-01 0.0722 0.0623 0.694 CD4T L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.89e-02 -0.174 0.0879 0.694 CD4T L1
ENSG00000162607 USP1 735344 sc-eQTL 9.19e-01 -0.00617 0.0606 0.694 CD4T L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.28e-01 0.0632 0.0795 0.694 CD4T L1
ENSG00000079739 PGM1 -421770 sc-eQTL 8.69e-01 -0.0127 0.0768 0.694 CD8T L1
ENSG00000088035 ALG6 -195934 sc-eQTL 7.86e-01 -0.023 0.0846 0.694 CD8T L1
ENSG00000116641 DOCK7 483255 sc-eQTL 5.53e-01 0.051 0.0857 0.694 CD8T L1
ENSG00000125703 ATG4C 387509 sc-eQTL 7.21e-02 0.146 0.0808 0.694 CD8T L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.75e-01 -0.0651 0.091 0.694 CD8T L1
ENSG00000162607 USP1 735344 sc-eQTL 1.29e-01 -0.108 0.0706 0.694 CD8T L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 1.90e-01 -0.119 0.0904 0.694 CD8T L1
ENSG00000079739 PGM1 -421770 sc-eQTL 1.39e-01 0.126 0.085 0.696 DC L1
ENSG00000088035 ALG6 -195934 sc-eQTL 1.63e-01 0.123 0.0878 0.696 DC L1
ENSG00000116641 DOCK7 483255 sc-eQTL 8.90e-01 -0.0125 0.0904 0.696 DC L1
ENSG00000125703 ATG4C 387509 sc-eQTL 9.09e-01 -0.0081 0.0708 0.696 DC L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 5.44e-02 -0.19 0.098 0.696 DC L1
ENSG00000162607 USP1 735344 sc-eQTL 1.06e-02 -0.219 0.085 0.696 DC L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.35e-01 0.0673 0.086 0.696 DC L1
ENSG00000079739 PGM1 -421770 sc-eQTL 5.76e-01 -0.0466 0.0832 0.694 Mono L1
ENSG00000088035 ALG6 -195934 sc-eQTL 2.11e-01 0.109 0.0865 0.694 Mono L1
ENSG00000116641 DOCK7 483255 sc-eQTL 3.70e-01 -0.0753 0.0838 0.694 Mono L1
ENSG00000125703 ATG4C 387509 sc-eQTL 4.74e-01 -0.0407 0.0567 0.694 Mono L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 8.07e-01 -0.0219 0.0897 0.694 Mono L1
ENSG00000162607 USP1 735344 sc-eQTL 4.60e-01 -0.0545 0.0736 0.694 Mono L1
ENSG00000240563 L1TD1 976792 sc-eQTL 4.39e-01 0.0532 0.0687 0.694 Mono L1
ENSG00000079739 PGM1 -421770 sc-eQTL 7.48e-01 0.0233 0.0724 0.695 NK L1
ENSG00000088035 ALG6 -195934 sc-eQTL 9.64e-01 0.00385 0.0849 0.695 NK L1
ENSG00000116641 DOCK7 483255 sc-eQTL 3.62e-01 -0.0637 0.0698 0.695 NK L1
ENSG00000125703 ATG4C 387509 sc-eQTL 5.16e-01 0.0487 0.075 0.695 NK L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.89e-01 0.0805 0.0932 0.695 NK L1
ENSG00000162607 USP1 735344 sc-eQTL 9.70e-01 -0.00311 0.0834 0.695 NK L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 9.09e-01 -0.0115 0.101 0.695 NK L1
ENSG00000079739 PGM1 -421770 sc-eQTL 7.34e-01 0.0277 0.0815 0.694 Other_T L1
ENSG00000088035 ALG6 -195934 sc-eQTL 7.61e-01 -0.0249 0.0818 0.694 Other_T L1
ENSG00000116641 DOCK7 483255 sc-eQTL 7.81e-01 0.0233 0.0836 0.694 Other_T L1
ENSG00000125703 ATG4C 387509 sc-eQTL 2.82e-02 0.158 0.0715 0.694 Other_T L1
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.96e-01 0.0545 0.0641 0.694 Other_T L1
ENSG00000162607 USP1 735344 sc-eQTL 4.91e-01 -0.0383 0.0556 0.694 Other_T L1
ENSG00000203965 EFCAB7 -351731 sc-eQTL 1.42e-01 -0.145 0.0985 0.694 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -421770 sc-eQTL 6.31e-01 0.051 0.106 0.684 B_Activated L2
ENSG00000088035 ALG6 -195934 sc-eQTL 7.51e-01 -0.0323 0.102 0.684 B_Activated L2
ENSG00000116641 DOCK7 483255 sc-eQTL 3.88e-01 -0.0818 0.0945 0.684 B_Activated L2
ENSG00000125703 ATG4C 387509 sc-eQTL 6.80e-01 -0.0411 0.0995 0.684 B_Activated L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.54e-01 -0.0901 0.0971 0.684 B_Activated L2
ENSG00000162607 USP1 735344 sc-eQTL 2.91e-01 0.111 0.105 0.684 B_Activated L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 2.79e-01 -0.0997 0.0918 0.684 B_Activated L2
ENSG00000079739 PGM1 -421770 sc-eQTL 3.36e-01 -0.0949 0.0984 0.695 B_Intermediate L2
ENSG00000088035 ALG6 -195934 sc-eQTL 1.27e-01 -0.153 0.0996 0.695 B_Intermediate L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.29e-01 0.00857 0.0957 0.695 B_Intermediate L2
ENSG00000125703 ATG4C 387509 sc-eQTL 9.29e-01 -0.00718 0.081 0.695 B_Intermediate L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.23e-01 -0.0773 0.0964 0.695 B_Intermediate L2
ENSG00000162607 USP1 735344 sc-eQTL 6.16e-01 -0.0484 0.0963 0.695 B_Intermediate L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 2.92e-01 -0.101 0.0953 0.695 B_Intermediate L2
ENSG00000079739 PGM1 -421770 sc-eQTL 8.77e-01 -0.0152 0.0982 0.7 B_Memory L2
ENSG00000088035 ALG6 -195934 sc-eQTL 7.37e-01 -0.0335 0.0998 0.7 B_Memory L2
ENSG00000116641 DOCK7 483255 sc-eQTL 2.43e-01 0.109 0.0934 0.7 B_Memory L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.54e-01 -0.0667 0.0889 0.7 B_Memory L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.68e-01 -0.113 0.102 0.7 B_Memory L2
ENSG00000162607 USP1 735344 sc-eQTL 2.34e-01 -0.122 0.102 0.7 B_Memory L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.58e-01 0.075 0.101 0.7 B_Memory L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.85e-01 0.129 0.0973 0.694 B_Naive1 L2
ENSG00000088035 ALG6 -195934 sc-eQTL 8.63e-01 0.017 0.0981 0.694 B_Naive1 L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.06e-01 0.0111 0.094 0.694 B_Naive1 L2
ENSG00000125703 ATG4C 387509 sc-eQTL 1.29e-02 0.179 0.0714 0.694 B_Naive1 L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.40e-01 -0.0917 0.0959 0.694 B_Naive1 L2
ENSG00000162607 USP1 735344 sc-eQTL 8.36e-01 0.0175 0.0845 0.694 B_Naive1 L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 3.57e-02 -0.214 0.101 0.694 B_Naive1 L2
ENSG00000079739 PGM1 -421770 sc-eQTL 4.14e-01 0.0789 0.0963 0.697 B_Naive2 L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.11e-01 0.102 0.1 0.697 B_Naive2 L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.00e-01 -0.0122 0.0967 0.697 B_Naive2 L2
ENSG00000125703 ATG4C 387509 sc-eQTL 7.81e-01 0.026 0.093 0.697 B_Naive2 L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.22e-01 -0.0811 0.101 0.697 B_Naive2 L2
ENSG00000162607 USP1 735344 sc-eQTL 4.26e-02 -0.194 0.0951 0.697 B_Naive2 L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 7.41e-01 -0.0332 0.1 0.697 B_Naive2 L2
ENSG00000079739 PGM1 -421770 sc-eQTL 7.89e-02 0.17 0.0964 0.695 CD4_CTL L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.09e-01 -0.105 0.102 0.695 CD4_CTL L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.81e-01 -0.0496 0.0897 0.695 CD4_CTL L2
ENSG00000125703 ATG4C 387509 sc-eQTL 3.52e-01 -0.0866 0.0927 0.695 CD4_CTL L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.48e-02 -0.222 0.0981 0.695 CD4_CTL L2
ENSG00000162607 USP1 735344 sc-eQTL 4.94e-01 0.0648 0.0945 0.695 CD4_CTL L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.47e-01 0.0719 0.0943 0.695 CD4_CTL L2
ENSG00000079739 PGM1 -421770 sc-eQTL 2.51e-01 0.0893 0.0777 0.694 CD4_Naive L2
ENSG00000088035 ALG6 -195934 sc-eQTL 4.68e-01 0.0614 0.0845 0.694 CD4_Naive L2
ENSG00000116641 DOCK7 483255 sc-eQTL 1.44e-01 0.121 0.0827 0.694 CD4_Naive L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.51e-01 0.0555 0.0734 0.694 CD4_Naive L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 1.86e-01 -0.119 0.0895 0.694 CD4_Naive L2
ENSG00000162607 USP1 735344 sc-eQTL 8.19e-01 0.0158 0.0686 0.694 CD4_Naive L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 3.70e-01 0.0799 0.089 0.694 CD4_Naive L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.82e-01 -0.108 0.0805 0.694 CD4_TCM L2
ENSG00000088035 ALG6 -195934 sc-eQTL 5.96e-01 -0.0498 0.0938 0.694 CD4_TCM L2
ENSG00000116641 DOCK7 483255 sc-eQTL 1.98e-01 -0.107 0.0829 0.694 CD4_TCM L2
ENSG00000125703 ATG4C 387509 sc-eQTL 8.31e-02 0.14 0.0804 0.694 CD4_TCM L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 1.39e-01 -0.141 0.095 0.694 CD4_TCM L2
ENSG00000162607 USP1 735344 sc-eQTL 1.78e-01 -0.105 0.078 0.694 CD4_TCM L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 9.58e-01 -0.00483 0.0924 0.694 CD4_TCM L2
ENSG00000079739 PGM1 -421770 sc-eQTL 3.29e-01 0.0935 0.0955 0.694 CD4_TEM L2
ENSG00000088035 ALG6 -195934 sc-eQTL 5.31e-01 0.0603 0.0961 0.694 CD4_TEM L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.13e-01 -0.0102 0.0938 0.694 CD4_TEM L2
ENSG00000125703 ATG4C 387509 sc-eQTL 2.29e-01 0.109 0.0908 0.694 CD4_TEM L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.22e-02 -0.214 0.0928 0.694 CD4_TEM L2
ENSG00000162607 USP1 735344 sc-eQTL 6.54e-01 -0.0399 0.089 0.694 CD4_TEM L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.81e-01 0.0686 0.0973 0.694 CD4_TEM L2
ENSG00000079739 PGM1 -421770 sc-eQTL 7.20e-01 0.0318 0.0886 0.694 CD8_CTL L2
ENSG00000088035 ALG6 -195934 sc-eQTL 4.64e-01 -0.0691 0.0941 0.694 CD8_CTL L2
ENSG00000116641 DOCK7 483255 sc-eQTL 7.64e-01 0.0268 0.0894 0.694 CD8_CTL L2
ENSG00000125703 ATG4C 387509 sc-eQTL 9.68e-01 -0.00377 0.0952 0.694 CD8_CTL L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 7.45e-01 -0.0323 0.0989 0.694 CD8_CTL L2
ENSG00000162607 USP1 735344 sc-eQTL 4.17e-01 -0.0719 0.0885 0.694 CD8_CTL L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.45e-01 -0.0198 0.101 0.694 CD8_CTL L2
ENSG00000079739 PGM1 -421770 sc-eQTL 4.71e-01 -0.0639 0.0885 0.694 CD8_Naive L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.18e-02 0.196 0.0907 0.694 CD8_Naive L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.30e-01 0.0596 0.0947 0.694 CD8_Naive L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.86e-01 0.0635 0.0909 0.694 CD8_Naive L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 8.58e-02 -0.158 0.0915 0.694 CD8_Naive L2
ENSG00000162607 USP1 735344 sc-eQTL 2.99e-01 -0.0809 0.0777 0.694 CD8_Naive L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 4.72e-01 -0.0625 0.0868 0.694 CD8_Naive L2
ENSG00000079739 PGM1 -421770 sc-eQTL 7.21e-01 0.0344 0.0963 0.69 CD8_TCM L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.46e-01 0.092 0.0973 0.69 CD8_TCM L2
ENSG00000116641 DOCK7 483255 sc-eQTL 1.65e-01 0.132 0.0947 0.69 CD8_TCM L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.05e-01 0.0811 0.0972 0.69 CD8_TCM L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 6.22e-01 -0.0467 0.0945 0.69 CD8_TCM L2
ENSG00000162607 USP1 735344 sc-eQTL 2.49e-01 -0.105 0.0907 0.69 CD8_TCM L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 5.68e-01 -0.0552 0.0963 0.69 CD8_TCM L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.81e-01 -0.133 0.0992 0.696 CD8_TEM L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.32e-01 -0.048 0.1 0.696 CD8_TEM L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.08e-01 0.0113 0.097 0.696 CD8_TEM L2
ENSG00000125703 ATG4C 387509 sc-eQTL 6.88e-01 0.0375 0.0932 0.696 CD8_TEM L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 8.53e-01 -0.0188 0.101 0.696 CD8_TEM L2
ENSG00000162607 USP1 735344 sc-eQTL 4.68e-01 -0.0699 0.0962 0.696 CD8_TEM L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.13e-02 -0.17 0.0971 0.696 CD8_TEM L2
ENSG00000079739 PGM1 -421770 sc-eQTL 9.14e-01 -0.0101 0.094 0.695 MAIT L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.26e-01 -0.0454 0.093 0.695 MAIT L2
ENSG00000116641 DOCK7 483255 sc-eQTL 2.95e-01 0.0933 0.0889 0.695 MAIT L2
ENSG00000125703 ATG4C 387509 sc-eQTL 1.75e-02 0.222 0.0928 0.695 MAIT L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.79e-01 -0.0667 0.0941 0.695 MAIT L2
ENSG00000162607 USP1 735344 sc-eQTL 3.08e-01 -0.0953 0.0932 0.695 MAIT L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.17e-01 0.0224 0.097 0.695 MAIT L2
ENSG00000079739 PGM1 -421770 sc-eQTL 6.96e-01 0.0368 0.094 0.7 NK_CD56bright L2
ENSG00000088035 ALG6 -195934 sc-eQTL 5.35e-01 -0.0598 0.0963 0.7 NK_CD56bright L2
ENSG00000116641 DOCK7 483255 sc-eQTL 6.92e-01 -0.0332 0.0835 0.7 NK_CD56bright L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.57e-01 0.0695 0.0932 0.7 NK_CD56bright L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 7.68e-01 0.0287 0.0972 0.7 NK_CD56bright L2
ENSG00000162607 USP1 735344 sc-eQTL 2.57e-01 0.114 0.0999 0.7 NK_CD56bright L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 9.71e-01 -0.00353 0.0959 0.7 NK_CD56bright L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.88e-01 0.0994 0.0753 0.698 NK_CD56dim L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.24e-01 -0.0946 0.0957 0.698 NK_CD56dim L2
ENSG00000116641 DOCK7 483255 sc-eQTL 2.61e-01 -0.0938 0.0832 0.698 NK_CD56dim L2
ENSG00000125703 ATG4C 387509 sc-eQTL 3.02e-01 0.0876 0.0846 0.698 NK_CD56dim L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.87e-01 0.0671 0.0963 0.698 NK_CD56dim L2
ENSG00000162607 USP1 735344 sc-eQTL 9.64e-01 -0.00424 0.0936 0.698 NK_CD56dim L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 7.44e-01 0.034 0.104 0.698 NK_CD56dim L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.44e-01 -0.15 0.102 0.703 NK_HLA L2
ENSG00000088035 ALG6 -195934 sc-eQTL 1.99e-01 0.137 0.106 0.703 NK_HLA L2
ENSG00000116641 DOCK7 483255 sc-eQTL 9.44e-01 0.00572 0.0814 0.703 NK_HLA L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.81e-01 0.0668 0.0945 0.703 NK_HLA L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 9.27e-01 -0.00907 0.0994 0.703 NK_HLA L2
ENSG00000162607 USP1 735344 sc-eQTL 8.83e-02 0.177 0.103 0.703 NK_HLA L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.90e-01 0.0131 0.0946 0.703 NK_HLA L2
ENSG00000079739 PGM1 -421770 sc-eQTL 5.47e-01 0.0494 0.0819 0.698 NK_cytokine L2
ENSG00000088035 ALG6 -195934 sc-eQTL 9.46e-01 0.00624 0.0926 0.698 NK_cytokine L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.23e-01 0.0549 0.0857 0.698 NK_cytokine L2
ENSG00000125703 ATG4C 387509 sc-eQTL 1.47e-01 0.127 0.0873 0.698 NK_cytokine L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.88e-01 -0.063 0.0908 0.698 NK_cytokine L2
ENSG00000162607 USP1 735344 sc-eQTL 8.92e-01 -0.0129 0.0955 0.698 NK_cytokine L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.67e-01 -0.0162 0.0968 0.698 NK_cytokine L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.54e-01 -0.162 0.113 0.674 PB L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.82e-01 0.0491 0.12 0.674 PB L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.08e-01 -0.0848 0.128 0.674 PB L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.35e-02 0.224 0.11 0.674 PB L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.72e-01 0.0995 0.111 0.674 PB L2
ENSG00000162607 USP1 735344 sc-eQTL 4.73e-01 0.0798 0.111 0.674 PB L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 6.24e-01 -0.0602 0.122 0.674 PB L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.45e-01 -0.128 0.0872 0.691 Pro_T L2
ENSG00000088035 ALG6 -195934 sc-eQTL 4.46e-01 -0.0679 0.089 0.691 Pro_T L2
ENSG00000116641 DOCK7 483255 sc-eQTL 2.76e-01 -0.0974 0.0892 0.691 Pro_T L2
ENSG00000125703 ATG4C 387509 sc-eQTL 7.29e-01 0.0272 0.0783 0.691 Pro_T L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.53e-01 0.0897 0.0783 0.691 Pro_T L2
ENSG00000162607 USP1 735344 sc-eQTL 5.18e-01 0.035 0.054 0.691 Pro_T L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 8.89e-01 -0.0128 0.0913 0.691 Pro_T L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.96e-01 -0.12 0.0922 0.694 Treg L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.88e-01 -0.0398 0.0989 0.694 Treg L2
ENSG00000116641 DOCK7 483255 sc-eQTL 4.40e-01 -0.0702 0.0907 0.694 Treg L2
ENSG00000125703 ATG4C 387509 sc-eQTL 7.47e-01 -0.03 0.0928 0.694 Treg L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.39e-01 -0.0928 0.0969 0.694 Treg L2
ENSG00000162607 USP1 735344 sc-eQTL 2.87e-01 -0.1 0.0937 0.694 Treg L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 3.34e-01 -0.0898 0.0927 0.694 Treg L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.57e-01 0.133 0.0932 0.702 cDC L2
ENSG00000088035 ALG6 -195934 sc-eQTL 2.73e-01 0.104 0.0947 0.702 cDC L2
ENSG00000116641 DOCK7 483255 sc-eQTL 6.35e-01 -0.0443 0.0932 0.702 cDC L2
ENSG00000125703 ATG4C 387509 sc-eQTL 8.13e-01 -0.0192 0.081 0.702 cDC L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 8.24e-01 -0.0229 0.103 0.702 cDC L2
ENSG00000162607 USP1 735344 sc-eQTL 1.92e-01 -0.119 0.091 0.702 cDC L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 9.06e-01 -0.00977 0.0825 0.702 cDC L2
ENSG00000079739 PGM1 -421770 sc-eQTL 3.55e-01 -0.0801 0.0865 0.694 cMono_IL1B L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.99e-01 -0.0336 0.0867 0.694 cMono_IL1B L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.96e-01 0.0486 0.0914 0.694 cMono_IL1B L2
ENSG00000125703 ATG4C 387509 sc-eQTL 6.94e-01 0.0253 0.0643 0.694 cMono_IL1B L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 6.82e-01 0.0373 0.091 0.694 cMono_IL1B L2
ENSG00000162607 USP1 735344 sc-eQTL 7.86e-02 -0.141 0.0798 0.694 cMono_IL1B L2
ENSG00000240563 L1TD1 976792 sc-eQTL 5.24e-01 0.0514 0.0806 0.694 cMono_IL1B L2
ENSG00000079739 PGM1 -421770 sc-eQTL 9.87e-01 -0.00154 0.0961 0.694 cMono_S100A L2
ENSG00000088035 ALG6 -195934 sc-eQTL 8.13e-02 0.169 0.0967 0.694 cMono_S100A L2
ENSG00000116641 DOCK7 483255 sc-eQTL 3.25e-01 -0.0888 0.0901 0.694 cMono_S100A L2
ENSG00000125703 ATG4C 387509 sc-eQTL 3.76e-01 -0.0693 0.078 0.694 cMono_S100A L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 3.38e-01 -0.0845 0.088 0.694 cMono_S100A L2
ENSG00000162607 USP1 735344 sc-eQTL 7.72e-01 -0.0263 0.0908 0.694 cMono_S100A L2
ENSG00000240563 L1TD1 976792 sc-eQTL 2.90e-01 0.0799 0.0753 0.694 cMono_S100A L2
ENSG00000079739 PGM1 -421770 sc-eQTL 5.31e-01 -0.0687 0.109 0.718 gdT L2
ENSG00000088035 ALG6 -195934 sc-eQTL 3.22e-02 0.249 0.115 0.718 gdT L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.49e-01 0.0688 0.114 0.718 gdT L2
ENSG00000125703 ATG4C 387509 sc-eQTL 8.44e-01 -0.0215 0.109 0.718 gdT L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 9.88e-01 0.0018 0.116 0.718 gdT L2
ENSG00000162607 USP1 735344 sc-eQTL 1.44e-01 -0.16 0.109 0.718 gdT L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 1.09e-03 -0.367 0.11 0.718 gdT L2
ENSG00000079739 PGM1 -421770 sc-eQTL 1.83e-01 -0.131 0.098 0.7 intMono L2
ENSG00000088035 ALG6 -195934 sc-eQTL 7.26e-01 -0.0321 0.0916 0.7 intMono L2
ENSG00000116641 DOCK7 483255 sc-eQTL 6.68e-01 0.0402 0.0936 0.7 intMono L2
ENSG00000125703 ATG4C 387509 sc-eQTL 2.86e-01 -0.0954 0.0891 0.7 intMono L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 4.83e-01 -0.0692 0.0983 0.7 intMono L2
ENSG00000162607 USP1 735344 sc-eQTL 4.20e-02 -0.203 0.0991 0.7 intMono L2
ENSG00000240563 L1TD1 976792 sc-eQTL 9.08e-01 -0.00853 0.0736 0.7 intMono L2
ENSG00000079739 PGM1 -421770 sc-eQTL 3.41e-01 0.0831 0.087 0.692 ncMono L2
ENSG00000088035 ALG6 -195934 sc-eQTL 6.87e-01 -0.0386 0.0957 0.692 ncMono L2
ENSG00000116641 DOCK7 483255 sc-eQTL 5.08e-01 -0.0624 0.0942 0.692 ncMono L2
ENSG00000125703 ATG4C 387509 sc-eQTL 3.22e-01 -0.0872 0.0878 0.692 ncMono L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 9.63e-01 -0.00424 0.0921 0.692 ncMono L2
ENSG00000162607 USP1 735344 sc-eQTL 5.39e-01 0.0578 0.094 0.692 ncMono L2
ENSG00000240563 L1TD1 976792 sc-eQTL 6.02e-01 -0.0349 0.0667 0.692 ncMono L2
ENSG00000079739 PGM1 -421770 sc-eQTL 6.26e-01 0.0534 0.109 0.692 pDC L2
ENSG00000088035 ALG6 -195934 sc-eQTL 8.56e-01 0.0193 0.107 0.692 pDC L2
ENSG00000116641 DOCK7 483255 sc-eQTL 4.87e-01 0.0757 0.109 0.692 pDC L2
ENSG00000125703 ATG4C 387509 sc-eQTL 4.01e-01 0.0822 0.0975 0.692 pDC L2
ENSG00000142856 ITGB3BP -422080 sc-eQTL 5.10e-01 -0.0723 0.11 0.692 pDC L2
ENSG00000162607 USP1 735344 sc-eQTL 1.58e-01 -0.158 0.111 0.692 pDC L2
ENSG00000203965 EFCAB7 -351731 sc-eQTL 6.04e-01 0.0504 0.097 0.692 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -421770 sc-eQTL 3.35e-01 -0.0884 0.0915 0.694 B_Memory LOneK1K
ENSG00000088035 ALG6 -195934 sc-eQTL 2.30e-01 -0.122 0.101 0.694 B_Memory LOneK1K
ENSG00000116641 DOCK7 483255 sc-eQTL 7.66e-01 -0.0263 0.088 0.694 B_Memory LOneK1K
ENSG00000125703 ATG4C 387509 sc-eQTL 1.82e-01 -0.0949 0.0709 0.694 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -422080 sc-eQTL 1.41e-01 -0.137 0.093 0.694 B_Memory LOneK1K
ENSG00000162607 USP1 735344 sc-eQTL 7.25e-01 -0.032 0.0908 0.694 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -351731 sc-eQTL 5.35e-01 -0.0604 0.0973 0.694 B_Memory LOneK1K
ENSG00000079739 PGM1 -421770 sc-eQTL 3.01e-01 0.0989 0.0954 0.694 B_Naive LOneK1K
ENSG00000088035 ALG6 -195934 sc-eQTL 4.44e-01 0.0755 0.0984 0.694 B_Naive LOneK1K
ENSG00000116641 DOCK7 483255 sc-eQTL 7.34e-01 0.0313 0.0919 0.694 B_Naive LOneK1K
ENSG00000125703 ATG4C 387509 sc-eQTL 7.50e-02 0.125 0.0697 0.694 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -422080 sc-eQTL 2.95e-01 -0.104 0.099 0.694 B_Naive LOneK1K
ENSG00000162607 USP1 735344 sc-eQTL 3.79e-01 -0.075 0.0851 0.694 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -351731 sc-eQTL 1.23e-01 -0.153 0.0992 0.694 B_Naive LOneK1K
ENSG00000079739 PGM1 -421770 sc-eQTL 7.41e-01 -0.0294 0.0887 0.694 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -195934 sc-eQTL 4.53e-01 0.0645 0.0858 0.694 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 483255 sc-eQTL 9.90e-01 0.00104 0.0865 0.694 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 387509 sc-eQTL 8.34e-01 -0.0125 0.0598 0.694 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -422080 sc-eQTL 9.36e-01 -0.00707 0.0885 0.694 CD14_Mono LOneK1K
ENSG00000162607 USP1 735344 sc-eQTL 1.92e-01 -0.0985 0.0753 0.694 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 976792 sc-eQTL 3.50e-01 0.0766 0.0818 0.694 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -421770 sc-eQTL 3.24e-01 -0.0834 0.0843 0.694 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -195934 sc-eQTL 9.52e-01 -0.00578 0.0959 0.694 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 483255 sc-eQTL 6.42e-01 -0.0442 0.0948 0.694 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 387509 sc-eQTL 2.46e-01 -0.0938 0.0806 0.694 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -422080 sc-eQTL 9.50e-01 -0.00588 0.0939 0.694 CD16_Mono LOneK1K
ENSG00000162607 USP1 735344 sc-eQTL 6.29e-01 -0.0427 0.0882 0.694 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 976792 sc-eQTL 9.57e-01 0.00327 0.0602 0.694 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -421770 sc-eQTL 7.18e-01 0.0267 0.0738 0.698 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -195934 sc-eQTL 9.76e-01 -0.00265 0.0886 0.698 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 483255 sc-eQTL 6.12e-01 -0.0403 0.0794 0.698 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 387509 sc-eQTL 3.51e-01 0.0739 0.0791 0.698 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -422080 sc-eQTL 7.98e-01 0.024 0.0939 0.698 NK_CD56dim LOneK1K
ENSG00000162607 USP1 735344 sc-eQTL 7.28e-01 -0.0297 0.0853 0.698 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -351731 sc-eQTL 9.87e-01 0.00163 0.104 0.698 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -421770 eQTL 0.0564 0.0374 0.0196 0.0046 0.0 0.278
ENSG00000116652 DLEU2L -375441 eQTL 0.0265 0.0631 0.0284 0.00151 0.0 0.278

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 DLEU2L -375441 1.28e-06 9.07e-07 3.22e-07 5.24e-07 2.71e-07 4.35e-07 1.13e-06 3.43e-07 1.15e-06 3.82e-07 1.38e-06 5.98e-07 1.75e-06 2.67e-07 4.19e-07 7.54e-07 8.28e-07 5.57e-07 5.72e-07 6.76e-07 3.99e-07 1.17e-06 7.76e-07 6.02e-07 1.92e-06 3.71e-07 6.7e-07 6.83e-07 1.04e-06 1.18e-06 5.79e-07 1.53e-07 2.33e-07 5.45e-07 3.93e-07 4.6e-07 4.61e-07 1.23e-07 2.94e-07 8.93e-08 3.03e-07 1.48e-06 6.12e-08 1.95e-08 1.73e-07 8.76e-08 2.01e-07 8.81e-08 1.04e-07
ENSG00000230798 \N -152800 4.24e-06 4.48e-06 8.72e-07 2.24e-06 1.33e-06 1.03e-06 3.07e-06 9.93e-07 3.9e-06 2.01e-06 4.16e-06 3.21e-06 6.98e-06 1.81e-06 1.42e-06 2.68e-06 1.79e-06 2.72e-06 1.41e-06 1.02e-06 2.51e-06 4.14e-06 3.38e-06 1.38e-06 4.86e-06 1.48e-06 2.35e-06 1.79e-06 4.38e-06 4.14e-06 1.94e-06 5.25e-07 6.1e-07 1.85e-06 1.95e-06 9.01e-07 9.64e-07 5.11e-07 8.94e-07 3.42e-07 4.32e-07 4.84e-06 4.65e-07 1.79e-07 5.79e-07 4.12e-07 7.44e-07 3.35e-07 3.74e-07