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Genes within 1Mb (chr1:63162977:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -430434 sc-eQTL 9.51e-01 -0.00556 0.0896 0.75 B L1
ENSG00000088035 ALG6 -204598 sc-eQTL 9.78e-01 0.0026 0.0928 0.75 B L1
ENSG00000116641 DOCK7 474591 sc-eQTL 1.94e-01 0.12 0.0924 0.75 B L1
ENSG00000125703 ATG4C 378845 sc-eQTL 1.25e-01 -0.0988 0.0642 0.75 B L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.15e-01 -0.103 0.102 0.75 B L1
ENSG00000162607 USP1 726680 sc-eQTL 7.54e-01 -0.028 0.0891 0.75 B L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 6.12e-01 0.0534 0.105 0.75 B L1
ENSG00000079739 PGM1 -430434 sc-eQTL 2.56e-01 -0.0875 0.0769 0.75 CD4T L1
ENSG00000088035 ALG6 -204598 sc-eQTL 8.73e-01 -0.0136 0.0851 0.75 CD4T L1
ENSG00000116641 DOCK7 474591 sc-eQTL 1.84e-01 0.114 0.0858 0.75 CD4T L1
ENSG00000125703 ATG4C 378845 sc-eQTL 6.15e-01 -0.035 0.0695 0.75 CD4T L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.00e-01 -0.102 0.0985 0.75 CD4T L1
ENSG00000162607 USP1 726680 sc-eQTL 1.62e-01 0.0943 0.0672 0.75 CD4T L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 1.85e-01 -0.117 0.0883 0.75 CD4T L1
ENSG00000079739 PGM1 -430434 sc-eQTL 5.61e-01 0.0491 0.0844 0.75 CD8T L1
ENSG00000088035 ALG6 -204598 sc-eQTL 1.68e-01 -0.128 0.0927 0.75 CD8T L1
ENSG00000116641 DOCK7 474591 sc-eQTL 1.61e-01 0.132 0.0939 0.75 CD8T L1
ENSG00000125703 ATG4C 378845 sc-eQTL 7.03e-02 0.162 0.089 0.75 CD8T L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.73e-01 -0.11 0.1 0.75 CD8T L1
ENSG00000162607 USP1 726680 sc-eQTL 7.76e-02 0.137 0.0775 0.75 CD8T L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 5.22e-01 -0.0641 0.0998 0.75 CD8T L1
ENSG00000079739 PGM1 -430434 sc-eQTL 1.47e-02 0.227 0.0921 0.75 DC L1
ENSG00000088035 ALG6 -204598 sc-eQTL 4.48e-01 -0.0732 0.0964 0.75 DC L1
ENSG00000116641 DOCK7 474591 sc-eQTL 9.94e-01 -0.000787 0.0989 0.75 DC L1
ENSG00000125703 ATG4C 378845 sc-eQTL 5.41e-02 0.149 0.0767 0.75 DC L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 7.57e-01 0.0336 0.108 0.75 DC L1
ENSG00000162607 USP1 726680 sc-eQTL 1.48e-01 0.137 0.094 0.75 DC L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 7.50e-01 0.03 0.0942 0.75 DC L1
ENSG00000079739 PGM1 -430434 sc-eQTL 5.62e-01 -0.0528 0.0908 0.75 Mono L1
ENSG00000088035 ALG6 -204598 sc-eQTL 5.53e-01 -0.0563 0.0948 0.75 Mono L1
ENSG00000116641 DOCK7 474591 sc-eQTL 2.56e-01 0.104 0.0914 0.75 Mono L1
ENSG00000125703 ATG4C 378845 sc-eQTL 8.90e-01 -0.00858 0.062 0.75 Mono L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.18e-01 -0.121 0.0976 0.75 Mono L1
ENSG00000162607 USP1 726680 sc-eQTL 8.59e-01 0.0143 0.0804 0.75 Mono L1
ENSG00000240563 L1TD1 968128 sc-eQTL 9.27e-01 0.00691 0.0751 0.75 Mono L1
ENSG00000079739 PGM1 -430434 sc-eQTL 3.65e-01 0.072 0.0793 0.749 NK L1
ENSG00000088035 ALG6 -204598 sc-eQTL 9.51e-03 0.24 0.0916 0.749 NK L1
ENSG00000116641 DOCK7 474591 sc-eQTL 9.11e-01 -0.00862 0.0767 0.749 NK L1
ENSG00000125703 ATG4C 378845 sc-eQTL 5.02e-01 0.0553 0.0823 0.749 NK L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 5.64e-01 -0.0592 0.102 0.749 NK L1
ENSG00000162607 USP1 726680 sc-eQTL 2.33e-01 0.109 0.0912 0.749 NK L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 7.87e-01 -0.0301 0.111 0.749 NK L1
ENSG00000079739 PGM1 -430434 sc-eQTL 7.85e-01 0.025 0.0917 0.75 Other_T L1
ENSG00000088035 ALG6 -204598 sc-eQTL 1.14e-01 -0.145 0.0916 0.75 Other_T L1
ENSG00000116641 DOCK7 474591 sc-eQTL 8.13e-01 -0.0223 0.094 0.75 Other_T L1
ENSG00000125703 ATG4C 378845 sc-eQTL 7.62e-01 0.0247 0.0814 0.75 Other_T L1
ENSG00000142856 ITGB3BP -430744 sc-eQTL 6.55e-02 -0.133 0.0716 0.75 Other_T L1
ENSG00000162607 USP1 726680 sc-eQTL 1.57e-01 0.0885 0.0623 0.75 Other_T L1
ENSG00000203965 EFCAB7 -360395 sc-eQTL 1.31e-02 -0.275 0.11 0.75 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -430434 sc-eQTL 3.46e-01 0.114 0.121 0.753 B_Activated L2
ENSG00000088035 ALG6 -204598 sc-eQTL 4.54e-01 -0.0874 0.116 0.753 B_Activated L2
ENSG00000116641 DOCK7 474591 sc-eQTL 9.87e-01 0.00179 0.108 0.753 B_Activated L2
ENSG00000125703 ATG4C 378845 sc-eQTL 6.37e-02 0.211 0.113 0.753 B_Activated L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.06e-02 0.24 0.11 0.753 B_Activated L2
ENSG00000162607 USP1 726680 sc-eQTL 8.23e-01 -0.0271 0.121 0.753 B_Activated L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 6.48e-01 0.0482 0.105 0.753 B_Activated L2
ENSG00000079739 PGM1 -430434 sc-eQTL 7.74e-01 -0.0303 0.105 0.751 B_Intermediate L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.75e-01 -0.00335 0.107 0.751 B_Intermediate L2
ENSG00000116641 DOCK7 474591 sc-eQTL 5.57e-01 -0.0602 0.102 0.751 B_Intermediate L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.58e-01 0.0155 0.0866 0.751 B_Intermediate L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 1.10e-02 -0.261 0.102 0.751 B_Intermediate L2
ENSG00000162607 USP1 726680 sc-eQTL 2.76e-01 0.112 0.103 0.751 B_Intermediate L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 9.15e-01 0.0109 0.102 0.751 B_Intermediate L2
ENSG00000079739 PGM1 -430434 sc-eQTL 6.00e-01 0.0556 0.106 0.75 B_Memory L2
ENSG00000088035 ALG6 -204598 sc-eQTL 8.32e-02 -0.186 0.107 0.75 B_Memory L2
ENSG00000116641 DOCK7 474591 sc-eQTL 7.46e-01 -0.0327 0.101 0.75 B_Memory L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.95e-01 0.0126 0.0959 0.75 B_Memory L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 5.64e-01 -0.0634 0.11 0.75 B_Memory L2
ENSG00000162607 USP1 726680 sc-eQTL 9.07e-01 -0.0129 0.111 0.75 B_Memory L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 5.92e-01 -0.0585 0.109 0.75 B_Memory L2
ENSG00000079739 PGM1 -430434 sc-eQTL 9.41e-01 0.00786 0.106 0.75 B_Naive1 L2
ENSG00000088035 ALG6 -204598 sc-eQTL 4.18e-01 -0.086 0.106 0.75 B_Naive1 L2
ENSG00000116641 DOCK7 474591 sc-eQTL 6.10e-02 0.19 0.101 0.75 B_Naive1 L2
ENSG00000125703 ATG4C 378845 sc-eQTL 6.25e-01 -0.0383 0.0782 0.75 B_Naive1 L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.51e-01 0.00643 0.104 0.75 B_Naive1 L2
ENSG00000162607 USP1 726680 sc-eQTL 9.55e-01 0.00521 0.0913 0.75 B_Naive1 L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 9.93e-01 0.000936 0.111 0.75 B_Naive1 L2
ENSG00000079739 PGM1 -430434 sc-eQTL 7.69e-01 -0.0303 0.103 0.749 B_Naive2 L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.86e-02 0.177 0.107 0.749 B_Naive2 L2
ENSG00000116641 DOCK7 474591 sc-eQTL 5.01e-01 0.0697 0.103 0.749 B_Naive2 L2
ENSG00000125703 ATG4C 378845 sc-eQTL 2.46e-01 -0.115 0.0992 0.749 B_Naive2 L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.89e-01 -0.114 0.108 0.749 B_Naive2 L2
ENSG00000162607 USP1 726680 sc-eQTL 6.73e-01 -0.0434 0.103 0.749 B_Naive2 L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 3.76e-01 0.0952 0.107 0.749 B_Naive2 L2
ENSG00000079739 PGM1 -430434 sc-eQTL 2.17e-01 -0.131 0.105 0.748 CD4_CTL L2
ENSG00000088035 ALG6 -204598 sc-eQTL 1.38e-01 -0.166 0.111 0.748 CD4_CTL L2
ENSG00000116641 DOCK7 474591 sc-eQTL 3.62e-01 -0.089 0.0975 0.748 CD4_CTL L2
ENSG00000125703 ATG4C 378845 sc-eQTL 5.30e-01 0.0636 0.101 0.748 CD4_CTL L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 8.79e-01 0.0165 0.108 0.748 CD4_CTL L2
ENSG00000162607 USP1 726680 sc-eQTL 6.01e-01 0.0538 0.103 0.748 CD4_CTL L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 8.22e-02 0.178 0.102 0.748 CD4_CTL L2
ENSG00000079739 PGM1 -430434 sc-eQTL 6.69e-01 -0.0375 0.0876 0.75 CD4_Naive L2
ENSG00000088035 ALG6 -204598 sc-eQTL 7.41e-01 0.0315 0.0951 0.75 CD4_Naive L2
ENSG00000116641 DOCK7 474591 sc-eQTL 3.24e-01 0.0922 0.0933 0.75 CD4_Naive L2
ENSG00000125703 ATG4C 378845 sc-eQTL 6.86e-01 -0.0335 0.0827 0.75 CD4_Naive L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.97e-01 -0.0856 0.101 0.75 CD4_Naive L2
ENSG00000162607 USP1 726680 sc-eQTL 9.34e-01 0.00642 0.0772 0.75 CD4_Naive L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 1.46e-01 -0.146 0.0998 0.75 CD4_Naive L2
ENSG00000079739 PGM1 -430434 sc-eQTL 4.02e-03 -0.255 0.0876 0.75 CD4_TCM L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.91e-01 -0.00117 0.104 0.75 CD4_TCM L2
ENSG00000116641 DOCK7 474591 sc-eQTL 3.39e-02 0.194 0.0909 0.75 CD4_TCM L2
ENSG00000125703 ATG4C 378845 sc-eQTL 9.69e-01 0.00345 0.0895 0.75 CD4_TCM L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.22e-01 -0.105 0.105 0.75 CD4_TCM L2
ENSG00000162607 USP1 726680 sc-eQTL 2.74e-01 0.0946 0.0863 0.75 CD4_TCM L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 2.06e-01 0.129 0.102 0.75 CD4_TCM L2
ENSG00000079739 PGM1 -430434 sc-eQTL 4.60e-01 0.0767 0.104 0.75 CD4_TEM L2
ENSG00000088035 ALG6 -204598 sc-eQTL 2.31e-02 -0.236 0.103 0.75 CD4_TEM L2
ENSG00000116641 DOCK7 474591 sc-eQTL 5.01e-01 -0.0684 0.101 0.75 CD4_TEM L2
ENSG00000125703 ATG4C 378845 sc-eQTL 4.63e-02 -0.196 0.0978 0.75 CD4_TEM L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.29e-01 0.00908 0.102 0.75 CD4_TEM L2
ENSG00000162607 USP1 726680 sc-eQTL 2.51e-01 0.111 0.0962 0.75 CD4_TEM L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 3.85e-01 -0.0917 0.105 0.75 CD4_TEM L2
ENSG00000079739 PGM1 -430434 sc-eQTL 9.34e-01 -0.00795 0.0955 0.75 CD8_CTL L2
ENSG00000088035 ALG6 -204598 sc-eQTL 5.63e-01 -0.0587 0.101 0.75 CD8_CTL L2
ENSG00000116641 DOCK7 474591 sc-eQTL 4.09e-01 -0.0795 0.0962 0.75 CD8_CTL L2
ENSG00000125703 ATG4C 378845 sc-eQTL 1.58e-01 0.145 0.102 0.75 CD8_CTL L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.61e-01 -0.12 0.106 0.75 CD8_CTL L2
ENSG00000162607 USP1 726680 sc-eQTL 1.67e-01 0.132 0.0951 0.75 CD8_CTL L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 7.42e-01 -0.036 0.109 0.75 CD8_CTL L2
ENSG00000079739 PGM1 -430434 sc-eQTL 4.49e-01 0.0744 0.0982 0.75 CD8_Naive L2
ENSG00000088035 ALG6 -204598 sc-eQTL 8.30e-01 -0.0219 0.102 0.75 CD8_Naive L2
ENSG00000116641 DOCK7 474591 sc-eQTL 1.39e-01 0.155 0.105 0.75 CD8_Naive L2
ENSG00000125703 ATG4C 378845 sc-eQTL 1.46e-01 0.147 0.101 0.75 CD8_Naive L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.64e-01 -0.114 0.102 0.75 CD8_Naive L2
ENSG00000162607 USP1 726680 sc-eQTL 5.26e-01 0.0548 0.0864 0.75 CD8_Naive L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 5.16e-01 0.0627 0.0963 0.75 CD8_Naive L2
ENSG00000079739 PGM1 -430434 sc-eQTL 8.21e-01 0.0251 0.111 0.75 CD8_TCM L2
ENSG00000088035 ALG6 -204598 sc-eQTL 1.32e-01 -0.169 0.112 0.75 CD8_TCM L2
ENSG00000116641 DOCK7 474591 sc-eQTL 4.34e-01 -0.0858 0.109 0.75 CD8_TCM L2
ENSG00000125703 ATG4C 378845 sc-eQTL 2.84e-02 0.245 0.111 0.75 CD8_TCM L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 6.05e-01 -0.0564 0.109 0.75 CD8_TCM L2
ENSG00000162607 USP1 726680 sc-eQTL 9.55e-01 -0.00588 0.105 0.75 CD8_TCM L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 3.55e-01 -0.103 0.111 0.75 CD8_TCM L2
ENSG00000079739 PGM1 -430434 sc-eQTL 7.69e-01 -0.0327 0.111 0.753 CD8_TEM L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.18e-01 -0.0114 0.112 0.753 CD8_TEM L2
ENSG00000116641 DOCK7 474591 sc-eQTL 6.22e-02 0.201 0.107 0.753 CD8_TEM L2
ENSG00000125703 ATG4C 378845 sc-eQTL 4.30e-01 -0.0821 0.104 0.753 CD8_TEM L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 6.37e-01 -0.0532 0.113 0.753 CD8_TEM L2
ENSG00000162607 USP1 726680 sc-eQTL 9.57e-02 0.179 0.107 0.753 CD8_TEM L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 1.11e-02 -0.275 0.107 0.753 CD8_TEM L2
ENSG00000079739 PGM1 -430434 sc-eQTL 9.74e-01 0.0033 0.103 0.751 MAIT L2
ENSG00000088035 ALG6 -204598 sc-eQTL 7.41e-02 -0.181 0.101 0.751 MAIT L2
ENSG00000116641 DOCK7 474591 sc-eQTL 7.20e-01 -0.0349 0.0974 0.751 MAIT L2
ENSG00000125703 ATG4C 378845 sc-eQTL 9.28e-01 -0.0093 0.103 0.751 MAIT L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.06e-01 -0.0121 0.103 0.751 MAIT L2
ENSG00000162607 USP1 726680 sc-eQTL 6.15e-01 0.0514 0.102 0.751 MAIT L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 1.66e-02 -0.252 0.105 0.751 MAIT L2
ENSG00000079739 PGM1 -430434 sc-eQTL 7.74e-01 -0.0306 0.106 0.749 NK_CD56bright L2
ENSG00000088035 ALG6 -204598 sc-eQTL 1.66e-01 0.151 0.109 0.749 NK_CD56bright L2
ENSG00000116641 DOCK7 474591 sc-eQTL 2.29e-01 -0.114 0.0942 0.749 NK_CD56bright L2
ENSG00000125703 ATG4C 378845 sc-eQTL 1.77e-01 0.143 0.105 0.749 NK_CD56bright L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.42e-02 0.184 0.109 0.749 NK_CD56bright L2
ENSG00000162607 USP1 726680 sc-eQTL 5.38e-01 0.0698 0.113 0.749 NK_CD56bright L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 2.75e-01 0.118 0.108 0.749 NK_CD56bright L2
ENSG00000079739 PGM1 -430434 sc-eQTL 8.80e-01 0.0125 0.0825 0.748 NK_CD56dim L2
ENSG00000088035 ALG6 -204598 sc-eQTL 5.88e-03 0.286 0.103 0.748 NK_CD56dim L2
ENSG00000116641 DOCK7 474591 sc-eQTL 4.55e-01 0.0681 0.091 0.748 NK_CD56dim L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.91e-01 -0.0127 0.0926 0.748 NK_CD56dim L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 8.39e-01 -0.0214 0.105 0.748 NK_CD56dim L2
ENSG00000162607 USP1 726680 sc-eQTL 1.36e-01 0.152 0.102 0.748 NK_CD56dim L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 3.79e-01 0.1 0.114 0.748 NK_CD56dim L2
ENSG00000079739 PGM1 -430434 sc-eQTL 8.62e-01 0.0191 0.109 0.74 NK_HLA L2
ENSG00000088035 ALG6 -204598 sc-eQTL 6.34e-01 -0.0541 0.113 0.74 NK_HLA L2
ENSG00000116641 DOCK7 474591 sc-eQTL 6.06e-01 -0.0448 0.0867 0.74 NK_HLA L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.36e-01 0.0209 0.101 0.74 NK_HLA L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.39e-01 -0.125 0.106 0.74 NK_HLA L2
ENSG00000162607 USP1 726680 sc-eQTL 5.36e-01 0.0687 0.111 0.74 NK_HLA L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 6.11e-01 -0.0514 0.101 0.74 NK_HLA L2
ENSG00000079739 PGM1 -430434 sc-eQTL 8.14e-01 -0.0212 0.0898 0.748 NK_cytokine L2
ENSG00000088035 ALG6 -204598 sc-eQTL 7.02e-01 0.0388 0.101 0.748 NK_cytokine L2
ENSG00000116641 DOCK7 474591 sc-eQTL 7.25e-01 0.0331 0.094 0.748 NK_cytokine L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.35e-01 -0.0201 0.0961 0.748 NK_cytokine L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.98e-01 -0.104 0.0993 0.748 NK_cytokine L2
ENSG00000162607 USP1 726680 sc-eQTL 6.57e-01 -0.0465 0.105 0.748 NK_cytokine L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 6.37e-01 -0.0502 0.106 0.748 NK_cytokine L2
ENSG00000079739 PGM1 -430434 sc-eQTL 5.64e-01 -0.0717 0.124 0.741 PB L2
ENSG00000088035 ALG6 -204598 sc-eQTL 5.82e-01 -0.0719 0.13 0.741 PB L2
ENSG00000116641 DOCK7 474591 sc-eQTL 8.51e-01 -0.0263 0.139 0.741 PB L2
ENSG00000125703 ATG4C 378845 sc-eQTL 5.08e-01 -0.0806 0.121 0.741 PB L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 7.45e-01 -0.0396 0.121 0.741 PB L2
ENSG00000162607 USP1 726680 sc-eQTL 6.54e-01 0.0542 0.121 0.741 PB L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 8.81e-01 -0.0199 0.133 0.741 PB L2
ENSG00000079739 PGM1 -430434 sc-eQTL 1.58e-01 -0.14 0.0985 0.752 Pro_T L2
ENSG00000088035 ALG6 -204598 sc-eQTL 2.26e-02 -0.229 0.0995 0.752 Pro_T L2
ENSG00000116641 DOCK7 474591 sc-eQTL 1.01e-01 0.165 0.1 0.752 Pro_T L2
ENSG00000125703 ATG4C 378845 sc-eQTL 4.28e-01 -0.0701 0.0884 0.752 Pro_T L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 3.96e-01 -0.0754 0.0886 0.752 Pro_T L2
ENSG00000162607 USP1 726680 sc-eQTL 4.52e-01 0.0459 0.0609 0.752 Pro_T L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 9.61e-02 -0.171 0.102 0.752 Pro_T L2
ENSG00000079739 PGM1 -430434 sc-eQTL 6.29e-01 -0.0493 0.102 0.75 Treg L2
ENSG00000088035 ALG6 -204598 sc-eQTL 3.19e-01 0.109 0.109 0.75 Treg L2
ENSG00000116641 DOCK7 474591 sc-eQTL 4.75e-01 0.0716 0.1 0.75 Treg L2
ENSG00000125703 ATG4C 378845 sc-eQTL 3.97e-01 -0.0868 0.102 0.75 Treg L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.67e-01 -0.00441 0.107 0.75 Treg L2
ENSG00000162607 USP1 726680 sc-eQTL 1.84e-01 0.138 0.103 0.75 Treg L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 9.64e-01 -0.00462 0.102 0.75 Treg L2
ENSG00000079739 PGM1 -430434 sc-eQTL 1.59e-01 0.144 0.102 0.749 cDC L2
ENSG00000088035 ALG6 -204598 sc-eQTL 8.50e-01 0.0197 0.104 0.749 cDC L2
ENSG00000116641 DOCK7 474591 sc-eQTL 1.79e-01 0.136 0.101 0.749 cDC L2
ENSG00000125703 ATG4C 378845 sc-eQTL 7.08e-01 0.0331 0.0882 0.749 cDC L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 2.89e-01 -0.119 0.112 0.749 cDC L2
ENSG00000162607 USP1 726680 sc-eQTL 5.26e-01 0.0631 0.0995 0.749 cDC L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 2.58e-01 -0.102 0.0896 0.749 cDC L2
ENSG00000079739 PGM1 -430434 sc-eQTL 9.68e-01 -0.0039 0.0964 0.75 cMono_IL1B L2
ENSG00000088035 ALG6 -204598 sc-eQTL 5.78e-01 -0.0537 0.0964 0.75 cMono_IL1B L2
ENSG00000116641 DOCK7 474591 sc-eQTL 6.82e-01 0.0417 0.102 0.75 cMono_IL1B L2
ENSG00000125703 ATG4C 378845 sc-eQTL 5.72e-01 -0.0404 0.0715 0.75 cMono_IL1B L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 5.09e-02 -0.197 0.1 0.75 cMono_IL1B L2
ENSG00000162607 USP1 726680 sc-eQTL 6.94e-01 0.0352 0.0894 0.75 cMono_IL1B L2
ENSG00000240563 L1TD1 968128 sc-eQTL 5.95e-01 0.0478 0.0897 0.75 cMono_IL1B L2
ENSG00000079739 PGM1 -430434 sc-eQTL 3.79e-01 -0.0946 0.107 0.75 cMono_S100A L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.54e-01 -0.00622 0.109 0.75 cMono_S100A L2
ENSG00000116641 DOCK7 474591 sc-eQTL 6.29e-01 0.0488 0.101 0.75 cMono_S100A L2
ENSG00000125703 ATG4C 378845 sc-eQTL 7.78e-01 0.0246 0.0874 0.75 cMono_S100A L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 7.75e-01 0.0283 0.0986 0.75 cMono_S100A L2
ENSG00000162607 USP1 726680 sc-eQTL 4.05e-01 0.0846 0.101 0.75 cMono_S100A L2
ENSG00000240563 L1TD1 968128 sc-eQTL 3.06e-01 0.0865 0.0842 0.75 cMono_S100A L2
ENSG00000079739 PGM1 -430434 sc-eQTL 5.07e-02 0.224 0.114 0.755 gdT L2
ENSG00000088035 ALG6 -204598 sc-eQTL 3.45e-01 -0.116 0.123 0.755 gdT L2
ENSG00000116641 DOCK7 474591 sc-eQTL 9.63e-01 0.00564 0.121 0.755 gdT L2
ENSG00000125703 ATG4C 378845 sc-eQTL 5.21e-01 -0.0741 0.115 0.755 gdT L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 6.44e-04 -0.41 0.118 0.755 gdT L2
ENSG00000162607 USP1 726680 sc-eQTL 8.89e-02 0.196 0.115 0.755 gdT L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 2.50e-01 0.139 0.12 0.755 gdT L2
ENSG00000079739 PGM1 -430434 sc-eQTL 8.23e-01 -0.0244 0.109 0.749 intMono L2
ENSG00000088035 ALG6 -204598 sc-eQTL 3.51e-01 0.0945 0.101 0.749 intMono L2
ENSG00000116641 DOCK7 474591 sc-eQTL 5.27e-01 -0.0656 0.103 0.749 intMono L2
ENSG00000125703 ATG4C 378845 sc-eQTL 8.07e-01 0.0242 0.0988 0.749 intMono L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 1.69e-01 0.149 0.108 0.749 intMono L2
ENSG00000162607 USP1 726680 sc-eQTL 4.69e-01 0.0801 0.111 0.749 intMono L2
ENSG00000240563 L1TD1 968128 sc-eQTL 4.94e-01 -0.0557 0.0813 0.749 intMono L2
ENSG00000079739 PGM1 -430434 sc-eQTL 1.28e-01 -0.146 0.0955 0.749 ncMono L2
ENSG00000088035 ALG6 -204598 sc-eQTL 1.86e-01 -0.139 0.105 0.749 ncMono L2
ENSG00000116641 DOCK7 474591 sc-eQTL 7.70e-01 0.0304 0.104 0.749 ncMono L2
ENSG00000125703 ATG4C 378845 sc-eQTL 9.58e-01 0.00509 0.0971 0.749 ncMono L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 7.98e-01 0.026 0.102 0.749 ncMono L2
ENSG00000162607 USP1 726680 sc-eQTL 9.12e-01 0.0115 0.104 0.749 ncMono L2
ENSG00000240563 L1TD1 968128 sc-eQTL 7.29e-01 -0.0255 0.0736 0.749 ncMono L2
ENSG00000079739 PGM1 -430434 sc-eQTL 5.22e-01 0.0743 0.116 0.76 pDC L2
ENSG00000088035 ALG6 -204598 sc-eQTL 9.66e-01 -0.00485 0.113 0.76 pDC L2
ENSG00000116641 DOCK7 474591 sc-eQTL 3.72e-01 -0.103 0.115 0.76 pDC L2
ENSG00000125703 ATG4C 378845 sc-eQTL 2.85e-01 0.111 0.103 0.76 pDC L2
ENSG00000142856 ITGB3BP -430744 sc-eQTL 9.35e-01 -0.00954 0.116 0.76 pDC L2
ENSG00000162607 USP1 726680 sc-eQTL 6.90e-01 0.0472 0.118 0.76 pDC L2
ENSG00000203965 EFCAB7 -360395 sc-eQTL 5.94e-01 0.0548 0.103 0.76 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -430434 sc-eQTL 3.29e-01 0.0968 0.0989 0.75 B_Memory LOneK1K
ENSG00000088035 ALG6 -204598 sc-eQTL 4.03e-01 -0.0916 0.109 0.75 B_Memory LOneK1K
ENSG00000116641 DOCK7 474591 sc-eQTL 5.57e-01 -0.0559 0.0951 0.75 B_Memory LOneK1K
ENSG00000125703 ATG4C 378845 sc-eQTL 7.95e-01 0.02 0.0769 0.75 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -430744 sc-eQTL 7.58e-02 -0.179 0.1 0.75 B_Memory LOneK1K
ENSG00000162607 USP1 726680 sc-eQTL 9.25e-01 0.00929 0.0981 0.75 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -360395 sc-eQTL 6.37e-01 -0.0498 0.105 0.75 B_Memory LOneK1K
ENSG00000079739 PGM1 -430434 sc-eQTL 9.02e-01 0.0127 0.102 0.75 B_Naive LOneK1K
ENSG00000088035 ALG6 -204598 sc-eQTL 8.98e-01 0.0135 0.105 0.75 B_Naive LOneK1K
ENSG00000116641 DOCK7 474591 sc-eQTL 3.11e-02 0.211 0.0973 0.75 B_Naive LOneK1K
ENSG00000125703 ATG4C 378845 sc-eQTL 2.13e-01 -0.0935 0.0748 0.75 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -430744 sc-eQTL 8.15e-01 -0.0249 0.106 0.75 B_Naive LOneK1K
ENSG00000162607 USP1 726680 sc-eQTL 3.53e-01 -0.0848 0.091 0.75 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -360395 sc-eQTL 4.46e-01 0.0813 0.107 0.75 B_Naive LOneK1K
ENSG00000079739 PGM1 -430434 sc-eQTL 5.91e-01 -0.0525 0.0976 0.75 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -204598 sc-eQTL 7.17e-01 -0.0343 0.0945 0.75 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 474591 sc-eQTL 5.82e-01 0.0525 0.0951 0.75 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 378845 sc-eQTL 7.37e-01 -0.0222 0.0658 0.75 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -430744 sc-eQTL 8.91e-02 -0.165 0.0967 0.75 CD14_Mono LOneK1K
ENSG00000162607 USP1 726680 sc-eQTL 5.23e-01 0.0532 0.0831 0.75 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 968128 sc-eQTL 5.51e-01 0.0538 0.0901 0.75 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -430434 sc-eQTL 2.14e-01 -0.114 0.0914 0.748 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -204598 sc-eQTL 9.20e-01 0.0105 0.104 0.748 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 474591 sc-eQTL 8.04e-01 0.0256 0.103 0.748 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 378845 sc-eQTL 5.71e-01 0.0498 0.0878 0.748 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -430744 sc-eQTL 6.11e-01 0.0519 0.102 0.748 CD16_Mono LOneK1K
ENSG00000162607 USP1 726680 sc-eQTL 7.77e-01 -0.0272 0.0959 0.748 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 968128 sc-eQTL 6.15e-01 -0.033 0.0654 0.748 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -430434 sc-eQTL 3.07e-01 0.0821 0.0802 0.748 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -204598 sc-eQTL 2.68e-02 0.213 0.0954 0.748 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 474591 sc-eQTL 7.24e-01 0.0305 0.0865 0.748 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 378845 sc-eQTL 9.10e-01 0.00979 0.0863 0.748 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -430744 sc-eQTL 5.39e-01 -0.0629 0.102 0.748 NK_CD56dim LOneK1K
ENSG00000162607 USP1 726680 sc-eQTL 2.43e-01 0.108 0.0926 0.748 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -360395 sc-eQTL 8.98e-01 -0.0146 0.113 0.748 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116652 DLEU2L -384105 eQTL 0.0111 -0.0759 0.0298 0.00273 0.0 0.247

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 DLEU2L -384105 1.25e-06 9.27e-07 2.1e-07 3.2e-07 1.11e-07 4.12e-07 7.1e-07 2.62e-07 7.85e-07 3.05e-07 1.09e-06 5.45e-07 1.23e-06 2.1e-07 4.15e-07 3.96e-07 7.62e-07 5.02e-07 3.43e-07 3.09e-07 2.43e-07 5.86e-07 4.69e-07 3.24e-07 1.46e-06 2.37e-07 5.05e-07 4.4e-07 6.33e-07 9.57e-07 4.61e-07 3.99e-08 1.28e-07 2.17e-07 3.28e-07 2.59e-07 2.9e-07 1.27e-07 7.56e-08 1.8e-08 8.29e-08 9.5e-07 7.37e-08 5.93e-09 1.61e-07 4.57e-08 1.54e-07 4.47e-08 5.26e-08