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Genes within 1Mb (chr1:63149276:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -444135 sc-eQTL 4.45e-01 -0.0585 0.0764 0.451 B L1
ENSG00000088035 ALG6 -218299 sc-eQTL 1.47e-01 -0.115 0.0789 0.451 B L1
ENSG00000116641 DOCK7 460890 sc-eQTL 2.99e-02 0.171 0.0784 0.451 B L1
ENSG00000125703 ATG4C 365144 sc-eQTL 7.86e-01 0.015 0.0551 0.451 B L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 2.14e-01 0.109 0.0874 0.451 B L1
ENSG00000162607 USP1 712979 sc-eQTL 7.91e-01 0.0202 0.0761 0.451 B L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 6.98e-01 0.0349 0.0898 0.451 B L1
ENSG00000079739 PGM1 -444135 sc-eQTL 9.28e-01 0.00597 0.0662 0.451 CD4T L1
ENSG00000088035 ALG6 -218299 sc-eQTL 4.16e-01 -0.0595 0.0729 0.451 CD4T L1
ENSG00000116641 DOCK7 460890 sc-eQTL 1.19e-01 0.115 0.0735 0.451 CD4T L1
ENSG00000125703 ATG4C 365144 sc-eQTL 1.00e-01 -0.098 0.0593 0.451 CD4T L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 4.81e-01 0.0597 0.0847 0.451 CD4T L1
ENSG00000162607 USP1 712979 sc-eQTL 9.99e-01 -9.69e-05 0.0579 0.451 CD4T L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.33e-01 -0.016 0.0761 0.451 CD4T L1
ENSG00000079739 PGM1 -444135 sc-eQTL 8.81e-01 0.0108 0.0724 0.451 CD8T L1
ENSG00000088035 ALG6 -218299 sc-eQTL 7.45e-01 0.026 0.0798 0.451 CD8T L1
ENSG00000116641 DOCK7 460890 sc-eQTL 6.17e-01 -0.0405 0.0808 0.451 CD8T L1
ENSG00000125703 ATG4C 365144 sc-eQTL 1.53e-01 -0.11 0.0764 0.451 CD8T L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 2.67e-01 0.0952 0.0856 0.451 CD8T L1
ENSG00000162607 USP1 712979 sc-eQTL 6.49e-01 -0.0305 0.0669 0.451 CD8T L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 2.25e-02 0.194 0.0845 0.451 CD8T L1
ENSG00000079739 PGM1 -444135 sc-eQTL 8.82e-01 0.012 0.0806 0.45 DC L1
ENSG00000088035 ALG6 -218299 sc-eQTL 6.50e-01 -0.0378 0.0832 0.45 DC L1
ENSG00000116641 DOCK7 460890 sc-eQTL 8.56e-01 -0.0155 0.0853 0.45 DC L1
ENSG00000125703 ATG4C 365144 sc-eQTL 4.59e-01 -0.0494 0.0667 0.45 DC L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 4.89e-01 -0.0645 0.0932 0.45 DC L1
ENSG00000162607 USP1 712979 sc-eQTL 4.31e-01 0.0642 0.0813 0.45 DC L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 6.36e-01 0.0385 0.0812 0.45 DC L1
ENSG00000079739 PGM1 -444135 sc-eQTL 1.04e-01 0.128 0.0784 0.451 Mono L1
ENSG00000088035 ALG6 -218299 sc-eQTL 6.41e-01 -0.0384 0.0823 0.451 Mono L1
ENSG00000116641 DOCK7 460890 sc-eQTL 8.89e-01 0.0111 0.0796 0.451 Mono L1
ENSG00000125703 ATG4C 365144 sc-eQTL 1.49e-01 0.0775 0.0535 0.451 Mono L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.43e-01 0.0169 0.085 0.451 Mono L1
ENSG00000162607 USP1 712979 sc-eQTL 3.90e-01 0.06 0.0697 0.451 Mono L1
ENSG00000240563 L1TD1 954427 sc-eQTL 9.81e-01 -0.00153 0.0652 0.451 Mono L1
ENSG00000079739 PGM1 -444135 sc-eQTL 4.61e-01 -0.0497 0.0673 0.453 NK L1
ENSG00000088035 ALG6 -218299 sc-eQTL 1.07e-02 -0.201 0.0778 0.453 NK L1
ENSG00000116641 DOCK7 460890 sc-eQTL 9.88e-01 -0.000989 0.0651 0.453 NK L1
ENSG00000125703 ATG4C 365144 sc-eQTL 2.13e-01 -0.0869 0.0696 0.453 NK L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.50e-01 -0.0165 0.0869 0.453 NK L1
ENSG00000162607 USP1 712979 sc-eQTL 8.16e-01 -0.0181 0.0776 0.453 NK L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 6.01e-01 0.0494 0.0943 0.453 NK L1
ENSG00000079739 PGM1 -444135 sc-eQTL 4.49e-01 -0.0583 0.0769 0.451 Other_T L1
ENSG00000088035 ALG6 -218299 sc-eQTL 1.40e-01 0.114 0.077 0.451 Other_T L1
ENSG00000116641 DOCK7 460890 sc-eQTL 9.27e-01 -0.00723 0.079 0.451 Other_T L1
ENSG00000125703 ATG4C 365144 sc-eQTL 1.54e-01 -0.0974 0.068 0.451 Other_T L1
ENSG00000142856 ITGB3BP -444445 sc-eQTL 9.35e-01 -0.00495 0.0606 0.451 Other_T L1
ENSG00000162607 USP1 712979 sc-eQTL 8.65e-01 0.00893 0.0526 0.451 Other_T L1
ENSG00000203965 EFCAB7 -374096 sc-eQTL 7.80e-01 -0.0261 0.0935 0.451 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -444135 sc-eQTL 9.83e-01 0.0022 0.102 0.459 B_Activated L2
ENSG00000088035 ALG6 -218299 sc-eQTL 6.97e-01 -0.0381 0.0977 0.459 B_Activated L2
ENSG00000116641 DOCK7 460890 sc-eQTL 2.94e-02 0.197 0.0897 0.459 B_Activated L2
ENSG00000125703 ATG4C 365144 sc-eQTL 1.83e-01 -0.127 0.0952 0.459 B_Activated L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 7.20e-01 0.0336 0.0935 0.459 B_Activated L2
ENSG00000162607 USP1 712979 sc-eQTL 9.18e-01 -0.0104 0.101 0.459 B_Activated L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 1.78e-01 0.119 0.088 0.459 B_Activated L2
ENSG00000079739 PGM1 -444135 sc-eQTL 7.68e-01 0.0272 0.092 0.453 B_Intermediate L2
ENSG00000088035 ALG6 -218299 sc-eQTL 6.98e-01 0.0363 0.0935 0.453 B_Intermediate L2
ENSG00000116641 DOCK7 460890 sc-eQTL 7.62e-01 -0.0271 0.0893 0.453 B_Intermediate L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.22e-01 0.0923 0.0753 0.453 B_Intermediate L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 3.14e-02 0.193 0.0891 0.453 B_Intermediate L2
ENSG00000162607 USP1 712979 sc-eQTL 5.95e-01 0.0479 0.0899 0.453 B_Intermediate L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 4.48e-01 -0.0677 0.0891 0.453 B_Intermediate L2
ENSG00000079739 PGM1 -444135 sc-eQTL 4.12e-01 -0.0744 0.0904 0.446 B_Memory L2
ENSG00000088035 ALG6 -218299 sc-eQTL 3.38e-01 -0.0881 0.0918 0.446 B_Memory L2
ENSG00000116641 DOCK7 460890 sc-eQTL 9.16e-01 0.00908 0.0863 0.446 B_Memory L2
ENSG00000125703 ATG4C 365144 sc-eQTL 7.11e-01 0.0304 0.082 0.446 B_Memory L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 3.15e-01 0.0944 0.0936 0.446 B_Memory L2
ENSG00000162607 USP1 712979 sc-eQTL 9.56e-01 -0.00528 0.0947 0.446 B_Memory L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.77e-01 0.0145 0.0932 0.446 B_Memory L2
ENSG00000079739 PGM1 -444135 sc-eQTL 3.08e-01 -0.0932 0.0913 0.451 B_Naive1 L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.47e-01 -0.0297 0.0918 0.451 B_Naive1 L2
ENSG00000116641 DOCK7 460890 sc-eQTL 2.03e-02 0.203 0.0869 0.451 B_Naive1 L2
ENSG00000125703 ATG4C 365144 sc-eQTL 5.62e-01 -0.0394 0.0677 0.451 B_Naive1 L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 3.80e-01 0.079 0.0898 0.451 B_Naive1 L2
ENSG00000162607 USP1 712979 sc-eQTL 9.13e-01 0.00865 0.0791 0.451 B_Naive1 L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 5.92e-01 0.0515 0.0959 0.451 B_Naive1 L2
ENSG00000079739 PGM1 -444135 sc-eQTL 5.92e-02 -0.171 0.0903 0.448 B_Naive2 L2
ENSG00000088035 ALG6 -218299 sc-eQTL 3.75e-02 -0.197 0.094 0.448 B_Naive2 L2
ENSG00000116641 DOCK7 460890 sc-eQTL 8.46e-02 0.157 0.0907 0.448 B_Naive2 L2
ENSG00000125703 ATG4C 365144 sc-eQTL 8.42e-01 -0.0176 0.0879 0.448 B_Naive2 L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 9.46e-01 -0.00641 0.0953 0.448 B_Naive2 L2
ENSG00000162607 USP1 712979 sc-eQTL 9.10e-01 0.0103 0.0908 0.448 B_Naive2 L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 1.96e-01 -0.123 0.0945 0.448 B_Naive2 L2
ENSG00000079739 PGM1 -444135 sc-eQTL 4.73e-01 -0.0642 0.0893 0.445 CD4_CTL L2
ENSG00000088035 ALG6 -218299 sc-eQTL 3.65e-01 -0.0856 0.0943 0.445 CD4_CTL L2
ENSG00000116641 DOCK7 460890 sc-eQTL 7.01e-01 0.0318 0.0826 0.445 CD4_CTL L2
ENSG00000125703 ATG4C 365144 sc-eQTL 7.35e-01 -0.029 0.0854 0.445 CD4_CTL L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 7.09e-01 -0.0341 0.0914 0.445 CD4_CTL L2
ENSG00000162607 USP1 712979 sc-eQTL 9.94e-01 -0.000648 0.087 0.445 CD4_CTL L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 4.27e-01 -0.069 0.0867 0.445 CD4_CTL L2
ENSG00000079739 PGM1 -444135 sc-eQTL 9.60e-01 -0.00375 0.0744 0.451 CD4_Naive L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.13e-01 -0.0297 0.0807 0.451 CD4_Naive L2
ENSG00000116641 DOCK7 460890 sc-eQTL 2.45e-01 0.0922 0.0791 0.451 CD4_Naive L2
ENSG00000125703 ATG4C 365144 sc-eQTL 6.61e-02 -0.129 0.0696 0.451 CD4_Naive L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 5.76e-01 0.048 0.0857 0.451 CD4_Naive L2
ENSG00000162607 USP1 712979 sc-eQTL 7.82e-01 -0.0181 0.0655 0.451 CD4_Naive L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.16e-01 -0.0199 0.0851 0.451 CD4_Naive L2
ENSG00000079739 PGM1 -444135 sc-eQTL 3.40e-01 0.0734 0.0768 0.451 CD4_TCM L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.10e-01 -0.0333 0.0893 0.451 CD4_TCM L2
ENSG00000116641 DOCK7 460890 sc-eQTL 6.50e-01 0.0359 0.0791 0.451 CD4_TCM L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.78e-01 -0.0837 0.0769 0.451 CD4_TCM L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.83e-01 0.0134 0.0909 0.451 CD4_TCM L2
ENSG00000162607 USP1 712979 sc-eQTL 2.08e-01 0.0937 0.0742 0.451 CD4_TCM L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 2.97e-01 0.0916 0.0877 0.451 CD4_TCM L2
ENSG00000079739 PGM1 -444135 sc-eQTL 7.91e-01 -0.0242 0.0911 0.451 CD4_TEM L2
ENSG00000088035 ALG6 -218299 sc-eQTL 9.78e-01 0.0025 0.0915 0.451 CD4_TEM L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.39e-01 0.0549 0.0892 0.451 CD4_TEM L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.89e-01 -0.0919 0.0864 0.451 CD4_TEM L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 1.62e-01 0.125 0.089 0.451 CD4_TEM L2
ENSG00000162607 USP1 712979 sc-eQTL 5.18e-01 -0.0549 0.0847 0.451 CD4_TEM L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.08e-01 -0.0226 0.0927 0.451 CD4_TEM L2
ENSG00000079739 PGM1 -444135 sc-eQTL 6.80e-01 0.0339 0.0821 0.451 CD8_CTL L2
ENSG00000088035 ALG6 -218299 sc-eQTL 1.84e-01 0.116 0.087 0.451 CD8_CTL L2
ENSG00000116641 DOCK7 460890 sc-eQTL 9.49e-01 0.00532 0.0829 0.451 CD8_CTL L2
ENSG00000125703 ATG4C 365144 sc-eQTL 7.12e-01 0.0326 0.0882 0.451 CD8_CTL L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.53e-01 0.0413 0.0917 0.451 CD8_CTL L2
ENSG00000162607 USP1 712979 sc-eQTL 6.88e-01 0.0331 0.0822 0.451 CD8_CTL L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 3.43e-01 0.0891 0.0938 0.451 CD8_CTL L2
ENSG00000079739 PGM1 -444135 sc-eQTL 9.89e-01 0.00115 0.0845 0.451 CD8_Naive L2
ENSG00000088035 ALG6 -218299 sc-eQTL 1.51e-01 -0.125 0.087 0.451 CD8_Naive L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.97e-01 -0.0478 0.0903 0.451 CD8_Naive L2
ENSG00000125703 ATG4C 365144 sc-eQTL 9.83e-01 -0.00187 0.0868 0.451 CD8_Naive L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 2.67e-01 0.0976 0.0876 0.451 CD8_Naive L2
ENSG00000162607 USP1 712979 sc-eQTL 7.70e-01 -0.0218 0.0743 0.451 CD8_Naive L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 1.79e-01 0.111 0.0825 0.451 CD8_Naive L2
ENSG00000079739 PGM1 -444135 sc-eQTL 2.65e-01 -0.102 0.0911 0.447 CD8_TCM L2
ENSG00000088035 ALG6 -218299 sc-eQTL 2.63e-01 0.104 0.0922 0.447 CD8_TCM L2
ENSG00000116641 DOCK7 460890 sc-eQTL 6.74e-01 0.038 0.0903 0.447 CD8_TCM L2
ENSG00000125703 ATG4C 365144 sc-eQTL 1.22e-02 -0.23 0.0909 0.447 CD8_TCM L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.73e-01 0.0143 0.0897 0.447 CD8_TCM L2
ENSG00000162607 USP1 712979 sc-eQTL 5.64e-01 0.0498 0.0863 0.447 CD8_TCM L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 1.89e-01 -0.12 0.0911 0.447 CD8_TCM L2
ENSG00000079739 PGM1 -444135 sc-eQTL 9.32e-01 -0.00798 0.094 0.447 CD8_TEM L2
ENSG00000088035 ALG6 -218299 sc-eQTL 1.89e-01 -0.124 0.094 0.447 CD8_TEM L2
ENSG00000116641 DOCK7 460890 sc-eQTL 3.57e-01 -0.0843 0.0913 0.447 CD8_TEM L2
ENSG00000125703 ATG4C 365144 sc-eQTL 8.90e-01 0.0122 0.0879 0.447 CD8_TEM L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.89e-01 0.0381 0.0952 0.447 CD8_TEM L2
ENSG00000162607 USP1 712979 sc-eQTL 1.44e-01 -0.133 0.0903 0.447 CD8_TEM L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 3.70e-01 0.0828 0.0921 0.447 CD8_TEM L2
ENSG00000079739 PGM1 -444135 sc-eQTL 8.34e-01 -0.0187 0.0891 0.452 MAIT L2
ENSG00000088035 ALG6 -218299 sc-eQTL 1.04e-01 0.143 0.0877 0.452 MAIT L2
ENSG00000116641 DOCK7 460890 sc-eQTL 4.96e-01 -0.0576 0.0845 0.452 MAIT L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.01e-01 -0.114 0.0888 0.452 MAIT L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 7.71e-01 0.026 0.0893 0.452 MAIT L2
ENSG00000162607 USP1 712979 sc-eQTL 2.18e-01 -0.109 0.0883 0.452 MAIT L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 4.17e-01 -0.0747 0.0918 0.452 MAIT L2
ENSG00000079739 PGM1 -444135 sc-eQTL 4.46e-01 0.0682 0.0892 0.449 NK_CD56bright L2
ENSG00000088035 ALG6 -218299 sc-eQTL 6.42e-03 -0.248 0.0899 0.449 NK_CD56bright L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.61e-01 0.0461 0.0793 0.449 NK_CD56bright L2
ENSG00000125703 ATG4C 365144 sc-eQTL 5.80e-01 0.0491 0.0886 0.449 NK_CD56bright L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 3.03e-01 -0.0951 0.0921 0.449 NK_CD56bright L2
ENSG00000162607 USP1 712979 sc-eQTL 9.24e-01 0.00911 0.0952 0.449 NK_CD56bright L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 2.00e-01 -0.117 0.0907 0.449 NK_CD56bright L2
ENSG00000079739 PGM1 -444135 sc-eQTL 7.32e-02 -0.125 0.0693 0.45 NK_CD56dim L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.86e-01 0.0241 0.0886 0.45 NK_CD56dim L2
ENSG00000116641 DOCK7 460890 sc-eQTL 3.08e-01 -0.0786 0.0769 0.45 NK_CD56dim L2
ENSG00000125703 ATG4C 365144 sc-eQTL 1.24e-01 -0.12 0.0779 0.45 NK_CD56dim L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.70e-01 -0.0381 0.0891 0.45 NK_CD56dim L2
ENSG00000162607 USP1 712979 sc-eQTL 9.71e-01 0.00317 0.0865 0.45 NK_CD56dim L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.53e-01 0.0179 0.0963 0.45 NK_CD56dim L2
ENSG00000079739 PGM1 -444135 sc-eQTL 9.63e-02 0.161 0.0961 0.447 NK_HLA L2
ENSG00000088035 ALG6 -218299 sc-eQTL 2.57e-01 -0.114 0.1 0.447 NK_HLA L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.38e-01 -0.0473 0.0767 0.447 NK_HLA L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.97e-01 0.0932 0.089 0.447 NK_HLA L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.07e-01 -0.0483 0.0937 0.447 NK_HLA L2
ENSG00000162607 USP1 712979 sc-eQTL 7.23e-01 0.0348 0.0981 0.447 NK_HLA L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 5.46e-01 0.054 0.0892 0.447 NK_HLA L2
ENSG00000079739 PGM1 -444135 sc-eQTL 2.74e-01 -0.0838 0.0763 0.45 NK_cytokine L2
ENSG00000088035 ALG6 -218299 sc-eQTL 8.84e-02 -0.147 0.0859 0.45 NK_cytokine L2
ENSG00000116641 DOCK7 460890 sc-eQTL 9.01e-01 0.01 0.0801 0.45 NK_cytokine L2
ENSG00000125703 ATG4C 365144 sc-eQTL 8.83e-02 -0.139 0.0814 0.45 NK_cytokine L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.32e-01 0.0407 0.0849 0.45 NK_cytokine L2
ENSG00000162607 USP1 712979 sc-eQTL 5.62e-01 -0.0518 0.0892 0.45 NK_cytokine L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 7.17e-01 0.0328 0.0904 0.45 NK_cytokine L2
ENSG00000079739 PGM1 -444135 sc-eQTL 2.69e-03 0.339 0.11 0.489 PB L2
ENSG00000088035 ALG6 -218299 sc-eQTL 8.17e-01 -0.028 0.121 0.489 PB L2
ENSG00000116641 DOCK7 460890 sc-eQTL 9.70e-01 -0.00481 0.129 0.489 PB L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.02e-01 -0.143 0.112 0.489 PB L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 4.18e-01 -0.0911 0.112 0.489 PB L2
ENSG00000162607 USP1 712979 sc-eQTL 3.42e-01 -0.106 0.111 0.489 PB L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 6.39e-01 0.0579 0.123 0.489 PB L2
ENSG00000079739 PGM1 -444135 sc-eQTL 4.53e-01 0.0632 0.084 0.452 Pro_T L2
ENSG00000088035 ALG6 -218299 sc-eQTL 1.13e-01 -0.136 0.0851 0.452 Pro_T L2
ENSG00000116641 DOCK7 460890 sc-eQTL 9.71e-01 0.00316 0.0859 0.452 Pro_T L2
ENSG00000125703 ATG4C 365144 sc-eQTL 7.92e-01 -0.0199 0.0752 0.452 Pro_T L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 7.91e-01 -0.02 0.0754 0.452 Pro_T L2
ENSG00000162607 USP1 712979 sc-eQTL 8.79e-01 0.00787 0.0519 0.452 Pro_T L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 7.35e-01 -0.0296 0.0876 0.452 Pro_T L2
ENSG00000079739 PGM1 -444135 sc-eQTL 5.28e-01 0.0544 0.0861 0.451 Treg L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.37e-01 0.031 0.0921 0.451 Treg L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.12e-01 -0.0555 0.0845 0.451 Treg L2
ENSG00000125703 ATG4C 365144 sc-eQTL 8.55e-01 -0.0158 0.0864 0.451 Treg L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.42e-01 -0.042 0.0904 0.451 Treg L2
ENSG00000162607 USP1 712979 sc-eQTL 1.22e-01 0.135 0.087 0.451 Treg L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.84e-01 0.0127 0.0865 0.451 Treg L2
ENSG00000079739 PGM1 -444135 sc-eQTL 8.58e-01 -0.0159 0.0886 0.459 cDC L2
ENSG00000088035 ALG6 -218299 sc-eQTL 6.44e-01 -0.0416 0.0898 0.459 cDC L2
ENSG00000116641 DOCK7 460890 sc-eQTL 6.17e-01 0.0441 0.0881 0.459 cDC L2
ENSG00000125703 ATG4C 365144 sc-eQTL 9.35e-01 -0.00621 0.0765 0.459 cDC L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 2.68e-01 -0.107 0.0967 0.459 cDC L2
ENSG00000162607 USP1 712979 sc-eQTL 1.43e-01 0.126 0.0859 0.459 cDC L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 9.25e-01 0.00731 0.0779 0.459 cDC L2
ENSG00000079739 PGM1 -444135 sc-eQTL 7.01e-02 0.149 0.0818 0.451 cMono_IL1B L2
ENSG00000088035 ALG6 -218299 sc-eQTL 3.41e-01 0.0786 0.0823 0.451 cMono_IL1B L2
ENSG00000116641 DOCK7 460890 sc-eQTL 7.24e-01 -0.0307 0.087 0.451 cMono_IL1B L2
ENSG00000125703 ATG4C 365144 sc-eQTL 1.96e-01 0.079 0.0609 0.451 cMono_IL1B L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.94e-01 0.0341 0.0866 0.451 cMono_IL1B L2
ENSG00000162607 USP1 712979 sc-eQTL 8.81e-01 0.0114 0.0764 0.451 cMono_IL1B L2
ENSG00000240563 L1TD1 954427 sc-eQTL 4.27e-01 0.061 0.0766 0.451 cMono_IL1B L2
ENSG00000079739 PGM1 -444135 sc-eQTL 2.58e-01 0.103 0.0906 0.451 cMono_S100A L2
ENSG00000088035 ALG6 -218299 sc-eQTL 8.73e-01 0.0147 0.0921 0.451 cMono_S100A L2
ENSG00000116641 DOCK7 460890 sc-eQTL 8.52e-01 0.016 0.0853 0.451 cMono_S100A L2
ENSG00000125703 ATG4C 365144 sc-eQTL 9.10e-01 0.00832 0.0739 0.451 cMono_S100A L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 9.12e-01 0.00917 0.0834 0.451 cMono_S100A L2
ENSG00000162607 USP1 712979 sc-eQTL 3.13e-03 0.251 0.084 0.451 cMono_S100A L2
ENSG00000240563 L1TD1 954427 sc-eQTL 4.06e-01 -0.0593 0.0713 0.451 cMono_S100A L2
ENSG00000079739 PGM1 -444135 sc-eQTL 1.31e-01 -0.152 0.1 0.43 gdT L2
ENSG00000088035 ALG6 -218299 sc-eQTL 4.38e-01 0.0835 0.107 0.43 gdT L2
ENSG00000116641 DOCK7 460890 sc-eQTL 7.20e-01 -0.0379 0.105 0.43 gdT L2
ENSG00000125703 ATG4C 365144 sc-eQTL 1.46e-01 -0.146 0.1 0.43 gdT L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.98e-01 0.0138 0.107 0.43 gdT L2
ENSG00000162607 USP1 712979 sc-eQTL 9.57e-02 0.168 0.1 0.43 gdT L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 3.06e-01 0.108 0.105 0.43 gdT L2
ENSG00000079739 PGM1 -444135 sc-eQTL 8.32e-01 -0.0196 0.0923 0.453 intMono L2
ENSG00000088035 ALG6 -218299 sc-eQTL 3.78e-01 -0.0759 0.0858 0.453 intMono L2
ENSG00000116641 DOCK7 460890 sc-eQTL 6.29e-01 -0.0424 0.0877 0.453 intMono L2
ENSG00000125703 ATG4C 365144 sc-eQTL 7.58e-01 0.0259 0.0838 0.453 intMono L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.98e-01 0.0358 0.0923 0.453 intMono L2
ENSG00000162607 USP1 712979 sc-eQTL 7.60e-01 -0.0287 0.0939 0.453 intMono L2
ENSG00000240563 L1TD1 954427 sc-eQTL 4.15e-01 0.0563 0.069 0.453 intMono L2
ENSG00000079739 PGM1 -444135 sc-eQTL 4.26e-01 -0.0654 0.0821 0.457 ncMono L2
ENSG00000088035 ALG6 -218299 sc-eQTL 4.63e-02 -0.179 0.0895 0.457 ncMono L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.69e-01 -0.0507 0.0889 0.457 ncMono L2
ENSG00000125703 ATG4C 365144 sc-eQTL 3.40e-01 0.0793 0.0829 0.457 ncMono L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 7.94e-01 -0.0227 0.0869 0.457 ncMono L2
ENSG00000162607 USP1 712979 sc-eQTL 2.46e-01 -0.103 0.0885 0.457 ncMono L2
ENSG00000240563 L1TD1 954427 sc-eQTL 7.25e-01 -0.0221 0.063 0.457 ncMono L2
ENSG00000079739 PGM1 -444135 sc-eQTL 7.51e-01 0.0321 0.101 0.469 pDC L2
ENSG00000088035 ALG6 -218299 sc-eQTL 7.49e-01 0.0315 0.0983 0.469 pDC L2
ENSG00000116641 DOCK7 460890 sc-eQTL 5.60e-01 -0.0586 0.1 0.469 pDC L2
ENSG00000125703 ATG4C 365144 sc-eQTL 2.23e-01 -0.11 0.0897 0.469 pDC L2
ENSG00000142856 ITGB3BP -444445 sc-eQTL 4.29e-01 -0.08 0.101 0.469 pDC L2
ENSG00000162607 USP1 712979 sc-eQTL 5.87e-01 -0.0561 0.103 0.469 pDC L2
ENSG00000203965 EFCAB7 -374096 sc-eQTL 2.96e-01 0.0936 0.0892 0.469 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -444135 sc-eQTL 7.71e-01 -0.0249 0.0852 0.451 B_Memory LOneK1K
ENSG00000088035 ALG6 -218299 sc-eQTL 5.92e-01 -0.0506 0.0942 0.451 B_Memory LOneK1K
ENSG00000116641 DOCK7 460890 sc-eQTL 4.09e-01 0.0675 0.0817 0.451 B_Memory LOneK1K
ENSG00000125703 ATG4C 365144 sc-eQTL 1.10e-01 0.106 0.0657 0.451 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.60e-02 0.159 0.0862 0.451 B_Memory LOneK1K
ENSG00000162607 USP1 712979 sc-eQTL 7.21e-01 -0.0302 0.0844 0.451 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -374096 sc-eQTL 8.90e-01 0.0125 0.0906 0.451 B_Memory LOneK1K
ENSG00000079739 PGM1 -444135 sc-eQTL 4.53e-02 -0.18 0.0892 0.451 B_Naive LOneK1K
ENSG00000088035 ALG6 -218299 sc-eQTL 2.01e-01 -0.118 0.0923 0.451 B_Naive LOneK1K
ENSG00000116641 DOCK7 460890 sc-eQTL 1.27e-02 0.214 0.0853 0.451 B_Naive LOneK1K
ENSG00000125703 ATG4C 365144 sc-eQTL 9.58e-01 0.00346 0.066 0.451 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -444445 sc-eQTL 6.83e-01 0.0382 0.0933 0.451 B_Naive LOneK1K
ENSG00000162607 USP1 712979 sc-eQTL 8.03e-01 0.0201 0.0802 0.451 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -374096 sc-eQTL 9.27e-01 -0.00863 0.0939 0.451 B_Naive LOneK1K
ENSG00000079739 PGM1 -444135 sc-eQTL 4.76e-02 0.166 0.0835 0.451 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -218299 sc-eQTL 4.92e-01 0.0561 0.0815 0.451 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 460890 sc-eQTL 9.39e-01 -0.00627 0.0821 0.451 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 365144 sc-eQTL 2.63e-01 0.0635 0.0566 0.451 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -444445 sc-eQTL 8.85e-01 0.0122 0.084 0.451 CD14_Mono LOneK1K
ENSG00000162607 USP1 712979 sc-eQTL 5.70e-02 0.136 0.0711 0.451 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 954427 sc-eQTL 8.35e-01 0.0162 0.0778 0.451 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -444135 sc-eQTL 8.38e-01 -0.0165 0.0804 0.453 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -218299 sc-eQTL 6.66e-03 -0.246 0.0897 0.453 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 460890 sc-eQTL 8.17e-01 -0.021 0.0903 0.453 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 365144 sc-eQTL 3.92e-01 0.0659 0.0768 0.453 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -444445 sc-eQTL 9.40e-01 -0.00678 0.0894 0.453 CD16_Mono LOneK1K
ENSG00000162607 USP1 712979 sc-eQTL 2.69e-01 -0.0928 0.0837 0.453 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 954427 sc-eQTL 9.47e-01 -0.00384 0.0573 0.453 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -444135 sc-eQTL 4.54e-01 -0.0513 0.0684 0.45 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -218299 sc-eQTL 1.22e-01 -0.127 0.0818 0.45 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 460890 sc-eQTL 5.29e-01 -0.0465 0.0736 0.45 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 365144 sc-eQTL 1.11e-01 -0.117 0.0731 0.45 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -444445 sc-eQTL 9.57e-01 -0.00469 0.0872 0.45 NK_CD56dim LOneK1K
ENSG00000162607 USP1 712979 sc-eQTL 7.75e-01 -0.0227 0.0791 0.45 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -374096 sc-eQTL 3.88e-01 0.0833 0.0961 0.45 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -397806 1.25e-06 8.69e-07 3.27e-07 7e-07 1.12e-07 4.57e-07 1.13e-06 1.45e-07 1.12e-06 2.77e-07 1.4e-06 5.68e-07 1.53e-06 2.29e-07 2.44e-07 5.7e-07 8.28e-07 5.47e-07 5.34e-07 1.8e-07 2.57e-07 8.58e-07 5.82e-07 1.76e-07 2.06e-06 2.99e-07 6.18e-07 4.7e-07 5.42e-07 1.24e-06 3.93e-07 3.72e-08 5.78e-08 1.36e-07 5.99e-07 3.32e-07 1.02e-07 1.07e-07 6.08e-08 1.57e-08 2.36e-07 1.26e-06 4.65e-08 1.31e-07 8.68e-08 4.43e-08 1.46e-07 3.09e-08 4.68e-08