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Genes within 1Mb (chr1:63130786:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -462625 sc-eQTL 1.18e-01 -0.113 0.0721 0.504 B L1
ENSG00000088035 ALG6 -236789 sc-eQTL 1.31e-01 -0.113 0.0747 0.504 B L1
ENSG00000116641 DOCK7 442400 sc-eQTL 2.58e-02 0.167 0.0742 0.504 B L1
ENSG00000125703 ATG4C 346654 sc-eQTL 9.50e-02 0.087 0.0519 0.504 B L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.99e-01 0.0106 0.0831 0.504 B L1
ENSG00000162607 USP1 694489 sc-eQTL 9.38e-01 0.00559 0.0721 0.504 B L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.03e-01 0.057 0.085 0.504 B L1
ENSG00000079739 PGM1 -462625 sc-eQTL 8.77e-01 -0.00979 0.0633 0.504 CD4T L1
ENSG00000088035 ALG6 -236789 sc-eQTL 3.88e-01 0.0603 0.0697 0.504 CD4T L1
ENSG00000116641 DOCK7 442400 sc-eQTL 4.58e-01 0.0525 0.0706 0.504 CD4T L1
ENSG00000125703 ATG4C 346654 sc-eQTL 5.91e-01 -0.0307 0.0571 0.504 CD4T L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.31e-01 0.00699 0.0811 0.504 CD4T L1
ENSG00000162607 USP1 694489 sc-eQTL 1.67e-01 -0.0765 0.0551 0.504 CD4T L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 9.70e-01 -0.00277 0.0728 0.504 CD4T L1
ENSG00000079739 PGM1 -462625 sc-eQTL 4.97e-01 -0.0473 0.0694 0.504 CD8T L1
ENSG00000088035 ALG6 -236789 sc-eQTL 5.44e-01 -0.0466 0.0765 0.504 CD8T L1
ENSG00000116641 DOCK7 442400 sc-eQTL 2.82e-01 0.0835 0.0774 0.504 CD8T L1
ENSG00000125703 ATG4C 346654 sc-eQTL 3.94e-02 -0.151 0.073 0.504 CD8T L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.73e-01 -0.00275 0.0824 0.504 CD8T L1
ENSG00000162607 USP1 694489 sc-eQTL 8.26e-01 -0.0142 0.0642 0.504 CD8T L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 4.07e-01 0.0682 0.082 0.504 CD8T L1
ENSG00000079739 PGM1 -462625 sc-eQTL 7.35e-01 -0.0259 0.0763 0.511 DC L1
ENSG00000088035 ALG6 -236789 sc-eQTL 5.60e-01 -0.0459 0.0787 0.511 DC L1
ENSG00000116641 DOCK7 442400 sc-eQTL 2.76e-01 0.088 0.0805 0.511 DC L1
ENSG00000125703 ATG4C 346654 sc-eQTL 1.86e-01 -0.0834 0.0629 0.511 DC L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.47e-01 -0.102 0.088 0.511 DC L1
ENSG00000162607 USP1 694489 sc-eQTL 4.68e-01 -0.056 0.077 0.511 DC L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.28e-01 -0.0485 0.0768 0.511 DC L1
ENSG00000079739 PGM1 -462625 sc-eQTL 5.50e-01 0.045 0.0753 0.504 Mono L1
ENSG00000088035 ALG6 -236789 sc-eQTL 4.17e-01 -0.0639 0.0785 0.504 Mono L1
ENSG00000116641 DOCK7 442400 sc-eQTL 1.55e-01 -0.108 0.0757 0.504 Mono L1
ENSG00000125703 ATG4C 346654 sc-eQTL 6.14e-01 0.0259 0.0514 0.504 Mono L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.06e-01 0.0096 0.0812 0.504 Mono L1
ENSG00000162607 USP1 694489 sc-eQTL 6.29e-01 -0.0323 0.0667 0.504 Mono L1
ENSG00000240563 L1TD1 935937 sc-eQTL 2.13e-01 -0.0775 0.062 0.504 Mono L1
ENSG00000079739 PGM1 -462625 sc-eQTL 4.72e-01 -0.0465 0.0645 0.506 NK L1
ENSG00000088035 ALG6 -236789 sc-eQTL 3.78e-02 -0.157 0.075 0.506 NK L1
ENSG00000116641 DOCK7 442400 sc-eQTL 7.14e-01 -0.0229 0.0624 0.506 NK L1
ENSG00000125703 ATG4C 346654 sc-eQTL 5.54e-01 -0.0396 0.0669 0.506 NK L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.08e-01 0.0428 0.0832 0.506 NK L1
ENSG00000162607 USP1 694489 sc-eQTL 6.97e-01 -0.029 0.0744 0.506 NK L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 9.02e-01 -0.0111 0.0904 0.506 NK L1
ENSG00000079739 PGM1 -462625 sc-eQTL 4.76e-01 -0.0527 0.0738 0.504 Other_T L1
ENSG00000088035 ALG6 -236789 sc-eQTL 1.08e-01 0.119 0.0738 0.504 Other_T L1
ENSG00000116641 DOCK7 442400 sc-eQTL 9.03e-01 0.00925 0.0758 0.504 Other_T L1
ENSG00000125703 ATG4C 346654 sc-eQTL 6.45e-01 -0.0303 0.0656 0.504 Other_T L1
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.59e-01 0.0178 0.0582 0.504 Other_T L1
ENSG00000162607 USP1 694489 sc-eQTL 5.76e-01 -0.0282 0.0504 0.504 Other_T L1
ENSG00000203965 EFCAB7 -392586 sc-eQTL 1.82e-01 0.12 0.0894 0.504 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -462625 sc-eQTL 9.82e-01 -0.00226 0.0998 0.497 B_Activated L2
ENSG00000088035 ALG6 -236789 sc-eQTL 7.73e-01 -0.0276 0.0956 0.497 B_Activated L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.75e-01 0.0636 0.0889 0.497 B_Activated L2
ENSG00000125703 ATG4C 346654 sc-eQTL 4.39e-01 -0.0724 0.0935 0.497 B_Activated L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.66e-01 0.0395 0.0914 0.497 B_Activated L2
ENSG00000162607 USP1 694489 sc-eQTL 5.72e-01 0.0561 0.0991 0.497 B_Activated L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.50e-01 0.0518 0.0865 0.497 B_Activated L2
ENSG00000079739 PGM1 -462625 sc-eQTL 9.51e-01 0.00532 0.0864 0.504 B_Intermediate L2
ENSG00000088035 ALG6 -236789 sc-eQTL 2.02e-01 -0.112 0.0874 0.504 B_Intermediate L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.65e-01 0.0037 0.0838 0.504 B_Intermediate L2
ENSG00000125703 ATG4C 346654 sc-eQTL 1.07e-01 0.114 0.0705 0.504 B_Intermediate L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.40e-02 0.19 0.0835 0.504 B_Intermediate L2
ENSG00000162607 USP1 694489 sc-eQTL 3.67e-01 0.0761 0.0842 0.504 B_Intermediate L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 7.04e-01 -0.0319 0.0837 0.504 B_Intermediate L2
ENSG00000079739 PGM1 -462625 sc-eQTL 7.32e-01 -0.0298 0.0868 0.5 B_Memory L2
ENSG00000088035 ALG6 -236789 sc-eQTL 7.41e-01 -0.0292 0.0883 0.5 B_Memory L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.28e-01 -0.081 0.0826 0.5 B_Memory L2
ENSG00000125703 ATG4C 346654 sc-eQTL 4.69e-01 0.057 0.0786 0.5 B_Memory L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.35e-01 0.0305 0.0901 0.5 B_Memory L2
ENSG00000162607 USP1 694489 sc-eQTL 9.60e-01 -0.00461 0.0909 0.5 B_Memory L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.43e-01 0.0545 0.0893 0.5 B_Memory L2
ENSG00000079739 PGM1 -462625 sc-eQTL 1.86e-01 -0.114 0.0857 0.504 B_Naive1 L2
ENSG00000088035 ALG6 -236789 sc-eQTL 6.08e-01 -0.0444 0.0863 0.504 B_Naive1 L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.63e-03 0.239 0.0811 0.504 B_Naive1 L2
ENSG00000125703 ATG4C 346654 sc-eQTL 7.57e-01 0.0198 0.0638 0.504 B_Naive1 L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.31e-01 -0.0181 0.0846 0.504 B_Naive1 L2
ENSG00000162607 USP1 694489 sc-eQTL 9.37e-01 0.00585 0.0744 0.504 B_Naive1 L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 4.71e-01 0.0651 0.0901 0.504 B_Naive1 L2
ENSG00000079739 PGM1 -462625 sc-eQTL 5.48e-02 -0.164 0.0848 0.502 B_Naive2 L2
ENSG00000088035 ALG6 -236789 sc-eQTL 3.60e-01 -0.0817 0.0891 0.502 B_Naive2 L2
ENSG00000116641 DOCK7 442400 sc-eQTL 2.75e-01 0.0937 0.0856 0.502 B_Naive2 L2
ENSG00000125703 ATG4C 346654 sc-eQTL 8.80e-01 0.0125 0.0826 0.502 B_Naive2 L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 3.98e-01 -0.0757 0.0894 0.502 B_Naive2 L2
ENSG00000162607 USP1 694489 sc-eQTL 4.85e-01 0.0596 0.0852 0.502 B_Naive2 L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 4.73e-01 -0.0639 0.089 0.502 B_Naive2 L2
ENSG00000079739 PGM1 -462625 sc-eQTL 4.17e-01 0.0713 0.0878 0.491 CD4_CTL L2
ENSG00000088035 ALG6 -236789 sc-eQTL 6.15e-01 0.0468 0.0929 0.491 CD4_CTL L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.58e-01 0.0603 0.0811 0.491 CD4_CTL L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.75e-01 0.0352 0.084 0.491 CD4_CTL L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.72e-01 0.00312 0.0899 0.491 CD4_CTL L2
ENSG00000162607 USP1 694489 sc-eQTL 9.08e-01 0.00991 0.0856 0.491 CD4_CTL L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 4.63e-01 0.0627 0.0853 0.491 CD4_CTL L2
ENSG00000079739 PGM1 -462625 sc-eQTL 8.62e-01 0.0124 0.0712 0.504 CD4_Naive L2
ENSG00000088035 ALG6 -236789 sc-eQTL 4.94e-01 0.0529 0.0773 0.504 CD4_Naive L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.52e-01 0.0572 0.0759 0.504 CD4_Naive L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.13e-01 -0.0677 0.067 0.504 CD4_Naive L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.18e-01 -0.00847 0.0821 0.504 CD4_Naive L2
ENSG00000162607 USP1 694489 sc-eQTL 2.52e-01 -0.0718 0.0625 0.504 CD4_Naive L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 7.41e-01 0.027 0.0815 0.504 CD4_Naive L2
ENSG00000079739 PGM1 -462625 sc-eQTL 9.05e-01 0.00878 0.0738 0.504 CD4_TCM L2
ENSG00000088035 ALG6 -236789 sc-eQTL 4.52e-01 0.0645 0.0856 0.504 CD4_TCM L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.71e-01 -0.00273 0.076 0.504 CD4_TCM L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.36e-02 -0.157 0.0732 0.504 CD4_TCM L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 5.32e-01 0.0546 0.0871 0.504 CD4_TCM L2
ENSG00000162607 USP1 694489 sc-eQTL 9.38e-01 -0.00555 0.0715 0.504 CD4_TCM L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 7.02e-01 -0.0323 0.0844 0.504 CD4_TCM L2
ENSG00000079739 PGM1 -462625 sc-eQTL 2.69e-01 -0.096 0.0866 0.504 CD4_TEM L2
ENSG00000088035 ALG6 -236789 sc-eQTL 8.54e-01 0.0161 0.0873 0.504 CD4_TEM L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.70e-01 -0.00324 0.0851 0.504 CD4_TEM L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.57e-01 0.0761 0.0825 0.504 CD4_TEM L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 1.75e-01 0.116 0.0849 0.504 CD4_TEM L2
ENSG00000162607 USP1 694489 sc-eQTL 9.88e-01 -0.00123 0.0808 0.504 CD4_TEM L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 6.41e-01 0.0413 0.0883 0.504 CD4_TEM L2
ENSG00000079739 PGM1 -462625 sc-eQTL 7.11e-01 0.0293 0.0791 0.504 CD8_CTL L2
ENSG00000088035 ALG6 -236789 sc-eQTL 5.64e-01 0.0486 0.084 0.504 CD8_CTL L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.08e-01 0.066 0.0797 0.504 CD8_CTL L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.66e-01 0.0367 0.0849 0.504 CD8_CTL L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 3.11e-01 0.0895 0.0881 0.504 CD8_CTL L2
ENSG00000162607 USP1 694489 sc-eQTL 6.26e-01 0.0386 0.0791 0.504 CD8_CTL L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 6.91e-01 0.036 0.0905 0.504 CD8_CTL L2
ENSG00000079739 PGM1 -462625 sc-eQTL 5.07e-01 -0.053 0.0797 0.504 CD8_Naive L2
ENSG00000088035 ALG6 -236789 sc-eQTL 5.85e-01 -0.0451 0.0825 0.504 CD8_Naive L2
ENSG00000116641 DOCK7 442400 sc-eQTL 6.29e-01 -0.0413 0.0853 0.504 CD8_Naive L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.81e-01 -0.0338 0.0819 0.504 CD8_Naive L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.33e-01 0.007 0.083 0.504 CD8_Naive L2
ENSG00000162607 USP1 694489 sc-eQTL 8.16e-01 -0.0164 0.0702 0.504 CD8_Naive L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 4.55e-01 0.0585 0.0781 0.504 CD8_Naive L2
ENSG00000079739 PGM1 -462625 sc-eQTL 1.55e-01 -0.124 0.0865 0.5 CD8_TCM L2
ENSG00000088035 ALG6 -236789 sc-eQTL 8.41e-01 0.0177 0.088 0.5 CD8_TCM L2
ENSG00000116641 DOCK7 442400 sc-eQTL 8.74e-02 0.147 0.0853 0.5 CD8_TCM L2
ENSG00000125703 ATG4C 346654 sc-eQTL 8.72e-03 -0.229 0.0863 0.5 CD8_TCM L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.74e-01 0.0359 0.0854 0.5 CD8_TCM L2
ENSG00000162607 USP1 694489 sc-eQTL 1.57e-01 0.116 0.0818 0.5 CD8_TCM L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 2.27e-01 -0.105 0.0867 0.5 CD8_TCM L2
ENSG00000079739 PGM1 -462625 sc-eQTL 4.87e-01 -0.0618 0.0886 0.495 CD8_TEM L2
ENSG00000088035 ALG6 -236789 sc-eQTL 5.72e-02 -0.169 0.0882 0.495 CD8_TEM L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.66e-01 0.00364 0.0863 0.495 CD8_TEM L2
ENSG00000125703 ATG4C 346654 sc-eQTL 9.52e-01 -0.00498 0.083 0.495 CD8_TEM L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.40e-01 -0.0298 0.0898 0.495 CD8_TEM L2
ENSG00000162607 USP1 694489 sc-eQTL 7.32e-01 -0.0294 0.0857 0.495 CD8_TEM L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 2.02e-01 0.111 0.0868 0.495 CD8_TEM L2
ENSG00000079739 PGM1 -462625 sc-eQTL 6.13e-01 -0.0427 0.0841 0.5 MAIT L2
ENSG00000088035 ALG6 -236789 sc-eQTL 1.40e-01 0.123 0.0829 0.5 MAIT L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.98e-01 -0.000154 0.0798 0.5 MAIT L2
ENSG00000125703 ATG4C 346654 sc-eQTL 7.25e-01 0.0296 0.0842 0.5 MAIT L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.06e-01 -0.0318 0.0843 0.5 MAIT L2
ENSG00000162607 USP1 694489 sc-eQTL 4.85e-02 -0.165 0.0829 0.5 MAIT L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 6.45e-01 0.0401 0.0868 0.5 MAIT L2
ENSG00000079739 PGM1 -462625 sc-eQTL 6.87e-01 -0.0342 0.0848 0.504 NK_CD56bright L2
ENSG00000088035 ALG6 -236789 sc-eQTL 4.57e-01 -0.0647 0.0868 0.504 NK_CD56bright L2
ENSG00000116641 DOCK7 442400 sc-eQTL 9.05e-01 -0.00903 0.0753 0.504 NK_CD56bright L2
ENSG00000125703 ATG4C 346654 sc-eQTL 7.66e-01 0.0251 0.0841 0.504 NK_CD56bright L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.57e-01 -0.0993 0.0874 0.504 NK_CD56bright L2
ENSG00000162607 USP1 694489 sc-eQTL 2.29e-01 0.109 0.09 0.504 NK_CD56bright L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 3.16e-01 -0.0867 0.0862 0.504 NK_CD56bright L2
ENSG00000079739 PGM1 -462625 sc-eQTL 1.41e-01 -0.0989 0.0669 0.504 NK_CD56dim L2
ENSG00000088035 ALG6 -236789 sc-eQTL 1.53e-01 -0.122 0.0849 0.504 NK_CD56dim L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.66e-01 -0.0672 0.0741 0.504 NK_CD56dim L2
ENSG00000125703 ATG4C 346654 sc-eQTL 2.79e-01 -0.0817 0.0752 0.504 NK_CD56dim L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.21e-01 -0.0195 0.0858 0.504 NK_CD56dim L2
ENSG00000162607 USP1 694489 sc-eQTL 5.83e-01 -0.0457 0.0832 0.504 NK_CD56dim L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 6.90e-01 -0.037 0.0927 0.504 NK_CD56dim L2
ENSG00000079739 PGM1 -462625 sc-eQTL 5.72e-01 0.052 0.0918 0.505 NK_HLA L2
ENSG00000088035 ALG6 -236789 sc-eQTL 5.63e-01 0.0551 0.0952 0.505 NK_HLA L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.54e-01 -0.0546 0.0728 0.505 NK_HLA L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.93e-01 0.0335 0.0847 0.505 NK_HLA L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 5.42e-01 0.0543 0.0889 0.505 NK_HLA L2
ENSG00000162607 USP1 694489 sc-eQTL 8.48e-01 0.0179 0.0931 0.505 NK_HLA L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 9.72e-01 0.00295 0.0847 0.505 NK_HLA L2
ENSG00000079739 PGM1 -462625 sc-eQTL 7.32e-01 0.0253 0.0737 0.504 NK_cytokine L2
ENSG00000088035 ALG6 -236789 sc-eQTL 4.60e-01 -0.0615 0.0832 0.504 NK_cytokine L2
ENSG00000116641 DOCK7 442400 sc-eQTL 7.78e-01 -0.0218 0.0771 0.504 NK_cytokine L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.49e-01 -0.0739 0.0787 0.504 NK_cytokine L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.66e-01 0.0908 0.0815 0.504 NK_cytokine L2
ENSG00000162607 USP1 694489 sc-eQTL 2.09e-01 -0.108 0.0856 0.504 NK_cytokine L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.51e-01 0.052 0.087 0.504 NK_cytokine L2
ENSG00000079739 PGM1 -462625 sc-eQTL 1.80e-01 0.15 0.111 0.537 PB L2
ENSG00000088035 ALG6 -236789 sc-eQTL 7.18e-01 0.0425 0.117 0.537 PB L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.80e-01 0.11 0.125 0.537 PB L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.51e-01 0.102 0.109 0.537 PB L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.25e-01 -0.132 0.109 0.537 PB L2
ENSG00000162607 USP1 694489 sc-eQTL 7.34e-01 -0.037 0.109 0.537 PB L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 3.33e-01 0.116 0.12 0.537 PB L2
ENSG00000079739 PGM1 -462625 sc-eQTL 6.87e-01 0.0321 0.0796 0.509 Pro_T L2
ENSG00000088035 ALG6 -236789 sc-eQTL 3.62e-01 -0.0739 0.0808 0.509 Pro_T L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.43e-01 -0.077 0.0811 0.509 Pro_T L2
ENSG00000125703 ATG4C 346654 sc-eQTL 7.39e-01 -0.0237 0.0711 0.509 Pro_T L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.46e-02 0.119 0.0709 0.509 Pro_T L2
ENSG00000162607 USP1 694489 sc-eQTL 5.97e-01 -0.026 0.049 0.509 Pro_T L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.40e-01 0.0509 0.0828 0.509 Pro_T L2
ENSG00000079739 PGM1 -462625 sc-eQTL 3.31e-01 0.0797 0.0817 0.504 Treg L2
ENSG00000088035 ALG6 -236789 sc-eQTL 7.57e-01 -0.0271 0.0876 0.504 Treg L2
ENSG00000116641 DOCK7 442400 sc-eQTL 1.53e-01 -0.115 0.08 0.504 Treg L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.34e-02 0.174 0.0813 0.504 Treg L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.56e-01 -0.0268 0.0859 0.504 Treg L2
ENSG00000162607 USP1 694489 sc-eQTL 7.68e-01 0.0246 0.0832 0.504 Treg L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 1.26e-01 -0.126 0.0818 0.504 Treg L2
ENSG00000079739 PGM1 -462625 sc-eQTL 7.59e-01 -0.0254 0.0829 0.515 cDC L2
ENSG00000088035 ALG6 -236789 sc-eQTL 8.45e-01 -0.0165 0.0841 0.515 cDC L2
ENSG00000116641 DOCK7 442400 sc-eQTL 3.76e-01 0.0731 0.0823 0.515 cDC L2
ENSG00000125703 ATG4C 346654 sc-eQTL 2.58e-01 -0.081 0.0714 0.515 cDC L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.83e-01 -0.0372 0.0908 0.515 cDC L2
ENSG00000162607 USP1 694489 sc-eQTL 6.95e-01 -0.0317 0.0808 0.515 cDC L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 2.57e-01 0.0826 0.0727 0.515 cDC L2
ENSG00000079739 PGM1 -462625 sc-eQTL 4.96e-01 0.0534 0.0783 0.504 cMono_IL1B L2
ENSG00000088035 ALG6 -236789 sc-eQTL 9.78e-01 0.00212 0.0785 0.504 cMono_IL1B L2
ENSG00000116641 DOCK7 442400 sc-eQTL 2.20e-01 -0.101 0.0824 0.504 cMono_IL1B L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.01e-01 -0.0305 0.0582 0.504 cMono_IL1B L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 7.56e-01 0.0257 0.0824 0.504 cMono_IL1B L2
ENSG00000162607 USP1 694489 sc-eQTL 5.78e-01 -0.0405 0.0727 0.504 cMono_IL1B L2
ENSG00000240563 L1TD1 935937 sc-eQTL 7.82e-01 -0.0202 0.073 0.504 cMono_IL1B L2
ENSG00000079739 PGM1 -462625 sc-eQTL 5.30e-01 0.0546 0.0868 0.504 cMono_S100A L2
ENSG00000088035 ALG6 -236789 sc-eQTL 6.76e-01 0.0369 0.0881 0.504 cMono_S100A L2
ENSG00000116641 DOCK7 442400 sc-eQTL 2.90e-01 -0.0865 0.0815 0.504 cMono_S100A L2
ENSG00000125703 ATG4C 346654 sc-eQTL 3.17e-01 0.0707 0.0705 0.504 cMono_S100A L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.54e-01 0.0147 0.0798 0.504 cMono_S100A L2
ENSG00000162607 USP1 694489 sc-eQTL 3.83e-01 0.0716 0.082 0.504 cMono_S100A L2
ENSG00000240563 L1TD1 935937 sc-eQTL 7.94e-01 -0.0179 0.0683 0.504 cMono_S100A L2
ENSG00000079739 PGM1 -462625 sc-eQTL 2.04e-01 -0.118 0.0926 0.482 gdT L2
ENSG00000088035 ALG6 -236789 sc-eQTL 6.05e-01 0.0514 0.0992 0.482 gdT L2
ENSG00000116641 DOCK7 442400 sc-eQTL 8.81e-01 -0.0146 0.0974 0.482 gdT L2
ENSG00000125703 ATG4C 346654 sc-eQTL 2.61e-01 -0.105 0.0926 0.482 gdT L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 9.49e-01 0.00632 0.0988 0.482 gdT L2
ENSG00000162607 USP1 694489 sc-eQTL 4.89e-01 0.0648 0.0934 0.482 gdT L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 7.53e-01 0.0306 0.0972 0.482 gdT L2
ENSG00000079739 PGM1 -462625 sc-eQTL 5.70e-01 -0.0496 0.0872 0.509 intMono L2
ENSG00000088035 ALG6 -236789 sc-eQTL 9.15e-02 -0.137 0.0807 0.509 intMono L2
ENSG00000116641 DOCK7 442400 sc-eQTL 7.61e-01 -0.0253 0.083 0.509 intMono L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.72e-01 0.0336 0.0792 0.509 intMono L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 4.09e-01 -0.0721 0.0872 0.509 intMono L2
ENSG00000162607 USP1 694489 sc-eQTL 3.91e-01 -0.0761 0.0886 0.509 intMono L2
ENSG00000240563 L1TD1 935937 sc-eQTL 2.53e-01 -0.0747 0.0651 0.509 intMono L2
ENSG00000079739 PGM1 -462625 sc-eQTL 6.29e-01 0.0381 0.0787 0.509 ncMono L2
ENSG00000088035 ALG6 -236789 sc-eQTL 1.94e-02 -0.201 0.0853 0.509 ncMono L2
ENSG00000116641 DOCK7 442400 sc-eQTL 2.00e-01 -0.109 0.0848 0.509 ncMono L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.34e-01 0.0379 0.0795 0.509 ncMono L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.67e-01 -0.0139 0.0832 0.509 ncMono L2
ENSG00000162607 USP1 694489 sc-eQTL 4.20e-01 -0.0686 0.0849 0.509 ncMono L2
ENSG00000240563 L1TD1 935937 sc-eQTL 1.61e-01 -0.0845 0.06 0.509 ncMono L2
ENSG00000079739 PGM1 -462625 sc-eQTL 2.60e-01 -0.109 0.096 0.523 pDC L2
ENSG00000088035 ALG6 -236789 sc-eQTL 6.48e-01 -0.043 0.0938 0.523 pDC L2
ENSG00000116641 DOCK7 442400 sc-eQTL 4.55e-01 0.0718 0.0957 0.523 pDC L2
ENSG00000125703 ATG4C 346654 sc-eQTL 6.30e-01 -0.0415 0.086 0.523 pDC L2
ENSG00000142856 ITGB3BP -462935 sc-eQTL 2.32e-01 -0.115 0.0961 0.523 pDC L2
ENSG00000162607 USP1 694489 sc-eQTL 7.63e-01 0.0297 0.0984 0.523 pDC L2
ENSG00000203965 EFCAB7 -392586 sc-eQTL 5.44e-01 -0.0519 0.0854 0.523 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -462625 sc-eQTL 5.19e-01 -0.0521 0.0806 0.504 B_Memory LOneK1K
ENSG00000088035 ALG6 -236789 sc-eQTL 1.64e-01 -0.124 0.0888 0.504 B_Memory LOneK1K
ENSG00000116641 DOCK7 442400 sc-eQTL 9.62e-01 -0.00372 0.0774 0.504 B_Memory LOneK1K
ENSG00000125703 ATG4C 346654 sc-eQTL 5.39e-02 0.12 0.062 0.504 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -462935 sc-eQTL 1.47e-01 0.119 0.0818 0.504 B_Memory LOneK1K
ENSG00000162607 USP1 694489 sc-eQTL 8.28e-01 -0.0174 0.0798 0.504 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -392586 sc-eQTL 6.25e-01 0.0419 0.0857 0.504 B_Memory LOneK1K
ENSG00000079739 PGM1 -462625 sc-eQTL 1.20e-02 -0.209 0.0825 0.504 B_Naive LOneK1K
ENSG00000088035 ALG6 -236789 sc-eQTL 4.47e-01 -0.0656 0.0861 0.504 B_Naive LOneK1K
ENSG00000116641 DOCK7 442400 sc-eQTL 4.79e-03 0.225 0.079 0.504 B_Naive LOneK1K
ENSG00000125703 ATG4C 346654 sc-eQTL 5.14e-01 0.0401 0.0614 0.504 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -462935 sc-eQTL 4.18e-01 -0.0703 0.0867 0.504 B_Naive LOneK1K
ENSG00000162607 USP1 694489 sc-eQTL 5.14e-01 0.0487 0.0745 0.504 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -392586 sc-eQTL 9.09e-01 -0.01 0.0873 0.504 B_Naive LOneK1K
ENSG00000079739 PGM1 -462625 sc-eQTL 3.25e-01 0.0789 0.08 0.504 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -236789 sc-eQTL 9.70e-01 -0.00294 0.0776 0.504 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 442400 sc-eQTL 1.68e-01 -0.108 0.0778 0.504 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 346654 sc-eQTL 9.85e-01 0.00104 0.054 0.504 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -462935 sc-eQTL 8.06e-01 0.0197 0.08 0.504 CD14_Mono LOneK1K
ENSG00000162607 USP1 694489 sc-eQTL 9.98e-01 -0.000145 0.0683 0.504 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 935937 sc-eQTL 6.54e-01 -0.0332 0.074 0.504 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -462625 sc-eQTL 9.41e-01 -0.00566 0.0762 0.506 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -236789 sc-eQTL 5.68e-03 -0.237 0.0849 0.506 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 442400 sc-eQTL 3.46e-01 -0.0806 0.0854 0.506 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 346654 sc-eQTL 3.51e-01 0.068 0.0728 0.506 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.47e-01 -0.0389 0.0847 0.506 CD16_Mono LOneK1K
ENSG00000162607 USP1 694489 sc-eQTL 5.07e-01 -0.0529 0.0795 0.506 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 935937 sc-eQTL 5.46e-02 -0.104 0.0538 0.506 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -462625 sc-eQTL 5.07e-01 -0.0436 0.0657 0.504 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -236789 sc-eQTL 4.94e-02 -0.155 0.0782 0.504 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 442400 sc-eQTL 2.85e-01 -0.0756 0.0705 0.504 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 346654 sc-eQTL 3.19e-01 -0.0704 0.0704 0.504 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -462935 sc-eQTL 6.52e-01 0.0377 0.0836 0.504 NK_CD56dim LOneK1K
ENSG00000162607 USP1 694489 sc-eQTL 3.52e-01 -0.0706 0.0758 0.504 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -392586 sc-eQTL 9.47e-01 0.00612 0.0924 0.504 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -416296 1.01e-06 6.42e-07 1.22e-07 4.08e-07 1.07e-07 2.54e-07 6.02e-07 1.78e-07 6.53e-07 2.87e-07 9.07e-07 4.62e-07 9.79e-07 1.6e-07 3.1e-07 3.41e-07 4.29e-07 4.16e-07 2.57e-07 1.78e-07 2.52e-07 4.99e-07 4.2e-07 2.29e-07 1.02e-06 2.49e-07 3.68e-07 3.24e-07 4.88e-07 7.06e-07 3.66e-07 6.7e-08 5.63e-08 1.79e-07 3.55e-07 1.58e-07 1.09e-07 1.1e-07 7.81e-08 2.24e-08 1.22e-07 6.8e-07 4.41e-08 2e-08 1.69e-07 1.48e-08 1.27e-07 1.77e-08 6.15e-08