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Genes within 1Mb (chr1:63107720:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -485691 sc-eQTL 7.46e-01 -0.0237 0.0731 0.605 B L1
ENSG00000088035 ALG6 -259855 sc-eQTL 5.70e-01 -0.0431 0.0757 0.605 B L1
ENSG00000116641 DOCK7 419334 sc-eQTL 4.98e-02 0.148 0.075 0.605 B L1
ENSG00000125703 ATG4C 323588 sc-eQTL 1.03e-03 0.171 0.0513 0.605 B L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 4.79e-01 0.0593 0.0837 0.605 B L1
ENSG00000162607 USP1 671423 sc-eQTL 5.53e-01 0.0432 0.0727 0.605 B L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 6.10e-01 0.0438 0.0858 0.605 B L1
ENSG00000079739 PGM1 -485691 sc-eQTL 5.54e-01 0.038 0.0642 0.605 CD4T L1
ENSG00000088035 ALG6 -259855 sc-eQTL 8.98e-01 -0.00911 0.0709 0.605 CD4T L1
ENSG00000116641 DOCK7 419334 sc-eQTL 5.77e-01 -0.04 0.0717 0.605 CD4T L1
ENSG00000125703 ATG4C 323588 sc-eQTL 9.85e-01 -0.00108 0.0579 0.605 CD4T L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.39e-01 -0.0275 0.0822 0.605 CD4T L1
ENSG00000162607 USP1 671423 sc-eQTL 7.03e-01 0.0214 0.0562 0.605 CD4T L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.32e-01 0.0156 0.0738 0.605 CD4T L1
ENSG00000079739 PGM1 -485691 sc-eQTL 5.30e-01 -0.0446 0.071 0.605 CD8T L1
ENSG00000088035 ALG6 -259855 sc-eQTL 5.78e-01 -0.0436 0.0783 0.605 CD8T L1
ENSG00000116641 DOCK7 419334 sc-eQTL 5.07e-02 0.154 0.0786 0.605 CD8T L1
ENSG00000125703 ATG4C 323588 sc-eQTL 2.05e-01 -0.0955 0.0751 0.605 CD8T L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.73e-01 0.0243 0.0843 0.605 CD8T L1
ENSG00000162607 USP1 671423 sc-eQTL 8.13e-01 0.0156 0.0657 0.605 CD8T L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 3.43e-01 0.0797 0.0838 0.605 CD8T L1
ENSG00000079739 PGM1 -485691 sc-eQTL 7.03e-01 0.0298 0.0782 0.606 DC L1
ENSG00000088035 ALG6 -259855 sc-eQTL 3.80e-01 -0.0709 0.0806 0.606 DC L1
ENSG00000116641 DOCK7 419334 sc-eQTL 9.90e-02 0.136 0.0821 0.606 DC L1
ENSG00000125703 ATG4C 323588 sc-eQTL 4.10e-03 -0.184 0.0634 0.606 DC L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.71e-01 -0.0512 0.0904 0.606 DC L1
ENSG00000162607 USP1 671423 sc-eQTL 6.56e-01 -0.0353 0.079 0.606 DC L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 1.41e-01 -0.116 0.0783 0.606 DC L1
ENSG00000079739 PGM1 -485691 sc-eQTL 7.13e-01 0.0286 0.0774 0.605 Mono L1
ENSG00000088035 ALG6 -259855 sc-eQTL 1.64e-01 -0.112 0.0804 0.605 Mono L1
ENSG00000116641 DOCK7 419334 sc-eQTL 2.54e-01 -0.0892 0.0779 0.605 Mono L1
ENSG00000125703 ATG4C 323588 sc-eQTL 5.35e-01 0.0328 0.0528 0.605 Mono L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.31e-01 0.1 0.0832 0.605 Mono L1
ENSG00000162607 USP1 671423 sc-eQTL 7.21e-01 -0.0245 0.0685 0.605 Mono L1
ENSG00000240563 L1TD1 912871 sc-eQTL 2.23e-02 -0.146 0.0632 0.605 Mono L1
ENSG00000079739 PGM1 -485691 sc-eQTL 8.81e-01 -0.00987 0.0661 0.607 NK L1
ENSG00000088035 ALG6 -259855 sc-eQTL 2.10e-02 -0.178 0.0766 0.607 NK L1
ENSG00000116641 DOCK7 419334 sc-eQTL 3.49e-01 -0.0598 0.0637 0.607 NK L1
ENSG00000125703 ATG4C 323588 sc-eQTL 9.78e-01 0.00185 0.0686 0.607 NK L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 6.68e-01 0.0366 0.0852 0.607 NK L1
ENSG00000162607 USP1 671423 sc-eQTL 9.69e-01 0.00295 0.0762 0.607 NK L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 1.83e-01 -0.123 0.0922 0.607 NK L1
ENSG00000079739 PGM1 -485691 sc-eQTL 4.95e-01 -0.0503 0.0736 0.605 Other_T L1
ENSG00000088035 ALG6 -259855 sc-eQTL 4.72e-02 0.146 0.0734 0.605 Other_T L1
ENSG00000116641 DOCK7 419334 sc-eQTL 9.71e-01 0.00275 0.0756 0.605 Other_T L1
ENSG00000125703 ATG4C 323588 sc-eQTL 5.06e-01 0.0436 0.0654 0.605 Other_T L1
ENSG00000142856 ITGB3BP -486001 sc-eQTL 9.88e-01 0.000889 0.058 0.605 Other_T L1
ENSG00000162607 USP1 671423 sc-eQTL 2.92e-01 -0.053 0.0502 0.605 Other_T L1
ENSG00000203965 EFCAB7 -415652 sc-eQTL 4.03e-01 0.075 0.0894 0.605 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -485691 sc-eQTL 8.49e-01 0.0188 0.0986 0.602 B_Activated L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.30e-01 0.0455 0.0944 0.602 B_Activated L2
ENSG00000116641 DOCK7 419334 sc-eQTL 9.31e-01 0.00768 0.0879 0.602 B_Activated L2
ENSG00000125703 ATG4C 323588 sc-eQTL 2.66e-01 -0.103 0.0922 0.602 B_Activated L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.94e-01 -0.0948 0.0901 0.602 B_Activated L2
ENSG00000162607 USP1 671423 sc-eQTL 4.16e-01 0.0798 0.0978 0.602 B_Activated L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.53e-01 -0.005 0.0855 0.602 B_Activated L2
ENSG00000079739 PGM1 -485691 sc-eQTL 1.95e-01 0.114 0.0875 0.605 B_Intermediate L2
ENSG00000088035 ALG6 -259855 sc-eQTL 3.21e-01 -0.0885 0.0891 0.605 B_Intermediate L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.51e-01 0.0508 0.0852 0.605 B_Intermediate L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.13e-02 0.13 0.0716 0.605 B_Intermediate L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 1.03e-03 0.279 0.0838 0.605 B_Intermediate L2
ENSG00000162607 USP1 671423 sc-eQTL 8.20e-01 -0.0195 0.0858 0.605 B_Intermediate L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 7.99e-01 -0.0217 0.0852 0.605 B_Intermediate L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.14e-01 -0.0321 0.0874 0.601 B_Memory L2
ENSG00000088035 ALG6 -259855 sc-eQTL 7.20e-01 -0.0319 0.0889 0.601 B_Memory L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.59e-01 -0.0488 0.0833 0.601 B_Memory L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.18e-01 0.0513 0.0792 0.601 B_Memory L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.82e-01 0.05 0.0906 0.601 B_Memory L2
ENSG00000162607 USP1 671423 sc-eQTL 7.51e-01 -0.0291 0.0915 0.601 B_Memory L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.69e-01 0.0148 0.09 0.601 B_Memory L2
ENSG00000079739 PGM1 -485691 sc-eQTL 2.70e-01 -0.0958 0.0867 0.605 B_Naive1 L2
ENSG00000088035 ALG6 -259855 sc-eQTL 7.28e-01 0.0303 0.0872 0.605 B_Naive1 L2
ENSG00000116641 DOCK7 419334 sc-eQTL 1.22e-02 0.208 0.0824 0.605 B_Naive1 L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.38e-02 0.115 0.0639 0.605 B_Naive1 L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 8.79e-01 -0.013 0.0854 0.605 B_Naive1 L2
ENSG00000162607 USP1 671423 sc-eQTL 6.24e-01 -0.0369 0.0751 0.605 B_Naive1 L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.84e-01 -0.0133 0.0912 0.605 B_Naive1 L2
ENSG00000079739 PGM1 -485691 sc-eQTL 5.53e-01 -0.051 0.0858 0.603 B_Naive2 L2
ENSG00000088035 ALG6 -259855 sc-eQTL 2.03e-01 -0.114 0.0892 0.603 B_Naive2 L2
ENSG00000116641 DOCK7 419334 sc-eQTL 4.80e-01 -0.0609 0.086 0.603 B_Naive2 L2
ENSG00000125703 ATG4C 323588 sc-eQTL 3.15e-02 0.177 0.0819 0.603 B_Naive2 L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 4.61e-01 -0.0662 0.0897 0.603 B_Naive2 L2
ENSG00000162607 USP1 671423 sc-eQTL 6.20e-02 0.159 0.0848 0.603 B_Naive2 L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 4.51e-01 -0.0674 0.0893 0.603 B_Naive2 L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.99e-01 -0.0227 0.0887 0.593 CD4_CTL L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.72e-01 0.0398 0.0938 0.593 CD4_CTL L2
ENSG00000116641 DOCK7 419334 sc-eQTL 9.28e-01 0.00746 0.082 0.593 CD4_CTL L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.43e-01 0.0279 0.0849 0.593 CD4_CTL L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 3.11e-01 0.092 0.0905 0.593 CD4_CTL L2
ENSG00000162607 USP1 671423 sc-eQTL 4.98e-01 0.0585 0.0863 0.593 CD4_CTL L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.66e-01 -0.00368 0.0863 0.593 CD4_CTL L2
ENSG00000079739 PGM1 -485691 sc-eQTL 5.29e-01 0.0456 0.0725 0.605 CD4_Naive L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.19e-01 0.0393 0.0787 0.605 CD4_Naive L2
ENSG00000116641 DOCK7 419334 sc-eQTL 7.30e-01 -0.0268 0.0774 0.605 CD4_Naive L2
ENSG00000125703 ATG4C 323588 sc-eQTL 6.35e-01 -0.0325 0.0684 0.605 CD4_Naive L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 4.56e-01 -0.0624 0.0835 0.605 CD4_Naive L2
ENSG00000162607 USP1 671423 sc-eQTL 5.78e-01 0.0356 0.0639 0.605 CD4_Naive L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 4.76e-01 0.0592 0.083 0.605 CD4_Naive L2
ENSG00000079739 PGM1 -485691 sc-eQTL 4.21e-01 0.0607 0.0754 0.605 CD4_TCM L2
ENSG00000088035 ALG6 -259855 sc-eQTL 9.39e-01 0.00676 0.0877 0.605 CD4_TCM L2
ENSG00000116641 DOCK7 419334 sc-eQTL 1.34e-01 -0.116 0.0773 0.605 CD4_TCM L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.11e-01 -0.0497 0.0756 0.605 CD4_TCM L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 9.52e-01 0.00532 0.0892 0.605 CD4_TCM L2
ENSG00000162607 USP1 671423 sc-eQTL 5.54e-01 0.0433 0.0731 0.605 CD4_TCM L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 7.15e-01 0.0315 0.0863 0.605 CD4_TCM L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.30e-01 0.0311 0.0902 0.605 CD4_TEM L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.15e-01 0.0457 0.0906 0.605 CD4_TEM L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.83e-01 0.0486 0.0883 0.605 CD4_TEM L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.07e-01 0.057 0.0857 0.605 CD4_TEM L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.41e-01 -0.0543 0.0885 0.605 CD4_TEM L2
ENSG00000162607 USP1 671423 sc-eQTL 3.27e-01 0.0822 0.0837 0.605 CD4_TEM L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.72e-01 -0.00326 0.0918 0.605 CD4_TEM L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.81e-01 0.0226 0.0811 0.605 CD8_CTL L2
ENSG00000088035 ALG6 -259855 sc-eQTL 7.75e-01 0.0247 0.0863 0.605 CD8_CTL L2
ENSG00000116641 DOCK7 419334 sc-eQTL 2.21e-01 0.1 0.0816 0.605 CD8_CTL L2
ENSG00000125703 ATG4C 323588 sc-eQTL 4.45e-01 0.0666 0.087 0.605 CD8_CTL L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.34e-01 0.0308 0.0906 0.605 CD8_CTL L2
ENSG00000162607 USP1 671423 sc-eQTL 6.44e-01 0.0376 0.0811 0.605 CD8_CTL L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 2.84e-01 -0.0995 0.0926 0.605 CD8_CTL L2
ENSG00000079739 PGM1 -485691 sc-eQTL 6.38e-01 -0.0381 0.0811 0.605 CD8_Naive L2
ENSG00000088035 ALG6 -259855 sc-eQTL 1.89e-01 -0.11 0.0836 0.605 CD8_Naive L2
ENSG00000116641 DOCK7 419334 sc-eQTL 9.17e-01 0.00907 0.0868 0.605 CD8_Naive L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.91e-01 -0.0221 0.0833 0.605 CD8_Naive L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.98e-01 0.0445 0.0843 0.605 CD8_Naive L2
ENSG00000162607 USP1 671423 sc-eQTL 6.14e-01 0.036 0.0713 0.605 CD8_Naive L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 2.81e-01 0.0858 0.0793 0.605 CD8_Naive L2
ENSG00000079739 PGM1 -485691 sc-eQTL 3.71e-01 -0.0808 0.0901 0.597 CD8_TCM L2
ENSG00000088035 ALG6 -259855 sc-eQTL 3.01e-01 0.0944 0.0911 0.597 CD8_TCM L2
ENSG00000116641 DOCK7 419334 sc-eQTL 8.58e-02 0.153 0.0885 0.597 CD8_TCM L2
ENSG00000125703 ATG4C 323588 sc-eQTL 1.74e-02 -0.216 0.0899 0.597 CD8_TCM L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 8.68e-01 -0.0147 0.0886 0.597 CD8_TCM L2
ENSG00000162607 USP1 671423 sc-eQTL 1.95e-01 0.11 0.0849 0.597 CD8_TCM L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.38e-01 0.0185 0.0903 0.597 CD8_TCM L2
ENSG00000079739 PGM1 -485691 sc-eQTL 5.85e-01 0.0487 0.0891 0.6 CD8_TEM L2
ENSG00000088035 ALG6 -259855 sc-eQTL 2.74e-01 -0.0979 0.0892 0.6 CD8_TEM L2
ENSG00000116641 DOCK7 419334 sc-eQTL 8.57e-01 -0.0157 0.0867 0.6 CD8_TEM L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.68e-01 0.0477 0.0833 0.6 CD8_TEM L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.38e-01 0.0556 0.0902 0.6 CD8_TEM L2
ENSG00000162607 USP1 671423 sc-eQTL 5.60e-01 -0.0502 0.086 0.6 CD8_TEM L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.34e-02 0.151 0.0868 0.6 CD8_TEM L2
ENSG00000079739 PGM1 -485691 sc-eQTL 5.39e-01 -0.053 0.0862 0.6 MAIT L2
ENSG00000088035 ALG6 -259855 sc-eQTL 1.29e-02 0.211 0.0841 0.6 MAIT L2
ENSG00000116641 DOCK7 419334 sc-eQTL 9.67e-01 0.00334 0.0818 0.6 MAIT L2
ENSG00000125703 ATG4C 323588 sc-eQTL 3.75e-01 0.0765 0.0861 0.6 MAIT L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.91e-01 -0.0913 0.0862 0.6 MAIT L2
ENSG00000162607 USP1 671423 sc-eQTL 1.28e-01 -0.13 0.0852 0.6 MAIT L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 7.33e-01 -0.0304 0.0889 0.6 MAIT L2
ENSG00000079739 PGM1 -485691 sc-eQTL 3.74e-01 -0.0781 0.0875 0.609 NK_CD56bright L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.27e-01 -0.0437 0.0899 0.609 NK_CD56bright L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.15e-01 -0.0507 0.0778 0.609 NK_CD56bright L2
ENSG00000125703 ATG4C 323588 sc-eQTL 6.05e-01 0.045 0.087 0.609 NK_CD56bright L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 1.62e-01 -0.127 0.0902 0.609 NK_CD56bright L2
ENSG00000162607 USP1 671423 sc-eQTL 3.08e-02 0.201 0.0924 0.609 NK_CD56bright L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 4.96e-01 -0.0609 0.0893 0.609 NK_CD56bright L2
ENSG00000079739 PGM1 -485691 sc-eQTL 3.69e-01 -0.0621 0.069 0.606 NK_CD56dim L2
ENSG00000088035 ALG6 -259855 sc-eQTL 1.15e-01 -0.138 0.0871 0.606 NK_CD56dim L2
ENSG00000116641 DOCK7 419334 sc-eQTL 1.99e-01 -0.0979 0.076 0.606 NK_CD56dim L2
ENSG00000125703 ATG4C 323588 sc-eQTL 4.00e-01 -0.0653 0.0774 0.606 NK_CD56dim L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.17e-01 -0.032 0.0881 0.606 NK_CD56dim L2
ENSG00000162607 USP1 671423 sc-eQTL 3.11e-01 -0.0866 0.0853 0.606 NK_CD56dim L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.36e-02 -0.159 0.0946 0.606 NK_CD56dim L2
ENSG00000079739 PGM1 -485691 sc-eQTL 8.02e-02 0.164 0.0931 0.61 NK_HLA L2
ENSG00000088035 ALG6 -259855 sc-eQTL 4.78e-01 0.069 0.0972 0.61 NK_HLA L2
ENSG00000116641 DOCK7 419334 sc-eQTL 4.68e-01 -0.054 0.0743 0.61 NK_HLA L2
ENSG00000125703 ATG4C 323588 sc-eQTL 2.93e-01 0.091 0.0863 0.61 NK_HLA L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 9.41e-01 0.00677 0.0908 0.61 NK_HLA L2
ENSG00000162607 USP1 671423 sc-eQTL 8.92e-01 0.0129 0.0951 0.61 NK_HLA L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 4.32e-01 -0.0681 0.0864 0.61 NK_HLA L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.41e-01 0.0247 0.0746 0.606 NK_cytokine L2
ENSG00000088035 ALG6 -259855 sc-eQTL 1.62e-01 -0.118 0.084 0.606 NK_cytokine L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.53e-01 -0.0464 0.0781 0.606 NK_cytokine L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.62e-01 -0.0243 0.0799 0.606 NK_cytokine L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 3.55e-01 0.0766 0.0826 0.606 NK_cytokine L2
ENSG00000162607 USP1 671423 sc-eQTL 6.03e-01 -0.0454 0.087 0.606 NK_cytokine L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.93e-01 -0.000787 0.0882 0.606 NK_cytokine L2
ENSG00000079739 PGM1 -485691 sc-eQTL 2.65e-01 0.118 0.105 0.63 PB L2
ENSG00000088035 ALG6 -259855 sc-eQTL 5.78e-01 -0.0618 0.111 0.63 PB L2
ENSG00000116641 DOCK7 419334 sc-eQTL 2.23e-01 0.144 0.118 0.63 PB L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.14e-01 0.038 0.103 0.63 PB L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.49e-01 -0.119 0.103 0.63 PB L2
ENSG00000162607 USP1 671423 sc-eQTL 6.76e-01 -0.0431 0.103 0.63 PB L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 9.69e-03 0.289 0.11 0.63 PB L2
ENSG00000079739 PGM1 -485691 sc-eQTL 6.66e-01 0.0342 0.0789 0.607 Pro_T L2
ENSG00000088035 ALG6 -259855 sc-eQTL 4.01e-01 -0.0674 0.0802 0.607 Pro_T L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.48e-02 -0.154 0.0799 0.607 Pro_T L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.53e-01 0.0419 0.0705 0.607 Pro_T L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 1.50e-01 0.102 0.0704 0.607 Pro_T L2
ENSG00000162607 USP1 671423 sc-eQTL 3.82e-01 -0.0425 0.0486 0.607 Pro_T L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 6.46e-01 0.0378 0.0822 0.607 Pro_T L2
ENSG00000079739 PGM1 -485691 sc-eQTL 8.94e-01 0.0113 0.0854 0.605 Treg L2
ENSG00000088035 ALG6 -259855 sc-eQTL 8.94e-02 -0.155 0.0907 0.605 Treg L2
ENSG00000116641 DOCK7 419334 sc-eQTL 7.07e-02 -0.151 0.0832 0.605 Treg L2
ENSG00000125703 ATG4C 323588 sc-eQTL 7.76e-03 0.226 0.0842 0.605 Treg L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.38e-01 0.106 0.0893 0.605 Treg L2
ENSG00000162607 USP1 671423 sc-eQTL 8.93e-01 0.0117 0.0867 0.605 Treg L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 1.99e-01 -0.11 0.0854 0.605 Treg L2
ENSG00000079739 PGM1 -485691 sc-eQTL 4.35e-01 0.0677 0.0865 0.607 cDC L2
ENSG00000088035 ALG6 -259855 sc-eQTL 8.21e-02 -0.152 0.0872 0.607 cDC L2
ENSG00000116641 DOCK7 419334 sc-eQTL 1.94e-01 0.112 0.0858 0.607 cDC L2
ENSG00000125703 ATG4C 323588 sc-eQTL 1.58e-02 -0.18 0.0737 0.607 cDC L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.96e-01 -0.0504 0.0949 0.607 cDC L2
ENSG00000162607 USP1 671423 sc-eQTL 9.09e-01 -0.00971 0.0845 0.607 cDC L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 1.80e-01 0.102 0.0759 0.607 cDC L2
ENSG00000079739 PGM1 -485691 sc-eQTL 9.73e-01 -0.00268 0.0803 0.605 cMono_IL1B L2
ENSG00000088035 ALG6 -259855 sc-eQTL 5.92e-01 -0.0432 0.0804 0.605 cMono_IL1B L2
ENSG00000116641 DOCK7 419334 sc-eQTL 1.12e-01 -0.135 0.0843 0.605 cMono_IL1B L2
ENSG00000125703 ATG4C 323588 sc-eQTL 3.44e-01 -0.0564 0.0595 0.605 cMono_IL1B L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.73e-01 0.0925 0.0842 0.605 cMono_IL1B L2
ENSG00000162607 USP1 671423 sc-eQTL 2.74e-01 -0.0815 0.0743 0.605 cMono_IL1B L2
ENSG00000240563 L1TD1 912871 sc-eQTL 7.95e-01 -0.0194 0.0748 0.605 cMono_IL1B L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.40e-01 0.0295 0.0889 0.605 cMono_S100A L2
ENSG00000088035 ALG6 -259855 sc-eQTL 7.58e-01 0.0277 0.0901 0.605 cMono_S100A L2
ENSG00000116641 DOCK7 419334 sc-eQTL 4.47e-01 -0.0635 0.0834 0.605 cMono_S100A L2
ENSG00000125703 ATG4C 323588 sc-eQTL 1.33e-01 0.109 0.0719 0.605 cMono_S100A L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 2.99e-01 0.0847 0.0814 0.605 cMono_S100A L2
ENSG00000162607 USP1 671423 sc-eQTL 1.38e-02 0.206 0.0828 0.605 cMono_S100A L2
ENSG00000240563 L1TD1 912871 sc-eQTL 1.01e-01 -0.114 0.0694 0.605 cMono_S100A L2
ENSG00000079739 PGM1 -485691 sc-eQTL 1.00e-01 -0.158 0.0952 0.594 gdT L2
ENSG00000088035 ALG6 -259855 sc-eQTL 8.83e-01 0.0151 0.103 0.594 gdT L2
ENSG00000116641 DOCK7 419334 sc-eQTL 6.92e-01 -0.0399 0.101 0.594 gdT L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.86e-01 0.0524 0.096 0.594 gdT L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.51e-01 -0.0325 0.102 0.594 gdT L2
ENSG00000162607 USP1 671423 sc-eQTL 8.84e-01 0.0141 0.0966 0.594 gdT L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 8.88e-01 -0.0142 0.1 0.594 gdT L2
ENSG00000079739 PGM1 -485691 sc-eQTL 3.51e-01 -0.0844 0.0903 0.609 intMono L2
ENSG00000088035 ALG6 -259855 sc-eQTL 3.66e-01 -0.0763 0.0841 0.609 intMono L2
ENSG00000116641 DOCK7 419334 sc-eQTL 2.69e-01 0.0952 0.0858 0.609 intMono L2
ENSG00000125703 ATG4C 323588 sc-eQTL 5.00e-01 0.0555 0.0821 0.609 intMono L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 9.76e-01 0.00275 0.0905 0.609 intMono L2
ENSG00000162607 USP1 671423 sc-eQTL 2.08e-01 -0.116 0.0917 0.609 intMono L2
ENSG00000240563 L1TD1 912871 sc-eQTL 7.05e-01 -0.0256 0.0677 0.609 intMono L2
ENSG00000079739 PGM1 -485691 sc-eQTL 7.25e-02 0.145 0.0803 0.613 ncMono L2
ENSG00000088035 ALG6 -259855 sc-eQTL 2.25e-02 -0.202 0.0877 0.613 ncMono L2
ENSG00000116641 DOCK7 419334 sc-eQTL 5.32e-01 -0.0547 0.0874 0.613 ncMono L2
ENSG00000125703 ATG4C 323588 sc-eQTL 6.57e-01 0.0363 0.0817 0.613 ncMono L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 6.22e-01 -0.0422 0.0854 0.613 ncMono L2
ENSG00000162607 USP1 671423 sc-eQTL 3.39e-02 -0.184 0.0864 0.613 ncMono L2
ENSG00000240563 L1TD1 912871 sc-eQTL 8.94e-03 -0.161 0.0609 0.613 ncMono L2
ENSG00000079739 PGM1 -485691 sc-eQTL 6.00e-01 -0.0514 0.0978 0.619 pDC L2
ENSG00000088035 ALG6 -259855 sc-eQTL 6.34e-01 0.0454 0.0952 0.619 pDC L2
ENSG00000116641 DOCK7 419334 sc-eQTL 7.72e-01 0.0282 0.0973 0.619 pDC L2
ENSG00000125703 ATG4C 323588 sc-eQTL 3.93e-01 -0.0746 0.0871 0.619 pDC L2
ENSG00000142856 ITGB3BP -486001 sc-eQTL 8.03e-01 0.0245 0.098 0.619 pDC L2
ENSG00000162607 USP1 671423 sc-eQTL 9.32e-01 -0.00856 0.0999 0.619 pDC L2
ENSG00000203965 EFCAB7 -415652 sc-eQTL 2.24e-01 -0.105 0.0863 0.619 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -485691 sc-eQTL 8.29e-01 0.0176 0.0812 0.605 B_Memory LOneK1K
ENSG00000088035 ALG6 -259855 sc-eQTL 2.49e-01 -0.103 0.0895 0.605 B_Memory LOneK1K
ENSG00000116641 DOCK7 419334 sc-eQTL 8.96e-01 0.0102 0.0779 0.605 B_Memory LOneK1K
ENSG00000125703 ATG4C 323588 sc-eQTL 9.01e-02 0.107 0.0626 0.605 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -486001 sc-eQTL 5.44e-02 0.159 0.0821 0.605 B_Memory LOneK1K
ENSG00000162607 USP1 671423 sc-eQTL 4.20e-01 -0.0648 0.0803 0.605 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -415652 sc-eQTL 7.07e-01 0.0324 0.0863 0.605 B_Memory LOneK1K
ENSG00000079739 PGM1 -485691 sc-eQTL 1.39e-01 -0.125 0.0842 0.605 B_Naive LOneK1K
ENSG00000088035 ALG6 -259855 sc-eQTL 8.00e-01 -0.0221 0.0871 0.605 B_Naive LOneK1K
ENSG00000116641 DOCK7 419334 sc-eQTL 8.35e-02 0.14 0.0808 0.605 B_Naive LOneK1K
ENSG00000125703 ATG4C 323588 sc-eQTL 1.11e-02 0.157 0.0611 0.605 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -486001 sc-eQTL 6.90e-01 -0.0351 0.0877 0.605 B_Naive LOneK1K
ENSG00000162607 USP1 671423 sc-eQTL 3.90e-01 0.0648 0.0753 0.605 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -415652 sc-eQTL 3.60e-01 -0.0807 0.088 0.605 B_Naive LOneK1K
ENSG00000079739 PGM1 -485691 sc-eQTL 6.78e-01 0.0342 0.0822 0.605 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -259855 sc-eQTL 5.66e-01 -0.0458 0.0795 0.605 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 419334 sc-eQTL 1.38e-01 -0.119 0.0797 0.605 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 323588 sc-eQTL 7.82e-01 0.0153 0.0554 0.605 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -486001 sc-eQTL 1.41e-01 0.121 0.0815 0.605 CD14_Mono LOneK1K
ENSG00000162607 USP1 671423 sc-eQTL 5.35e-01 0.0435 0.07 0.605 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 912871 sc-eQTL 3.02e-01 -0.0783 0.0757 0.605 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -485691 sc-eQTL 9.23e-01 0.0076 0.079 0.608 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -259855 sc-eQTL 9.84e-03 -0.23 0.0883 0.608 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 419334 sc-eQTL 8.27e-01 0.0194 0.0887 0.608 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 323588 sc-eQTL 1.86e-01 0.1 0.0753 0.608 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -486001 sc-eQTL 8.08e-01 -0.0214 0.0878 0.608 CD16_Mono LOneK1K
ENSG00000162607 USP1 671423 sc-eQTL 8.42e-02 -0.142 0.0819 0.608 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 912871 sc-eQTL 1.14e-02 -0.142 0.0554 0.608 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -485691 sc-eQTL 9.19e-01 -0.00687 0.0675 0.606 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -259855 sc-eQTL 3.63e-02 -0.169 0.0802 0.606 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 419334 sc-eQTL 1.76e-01 -0.0981 0.0723 0.606 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 323588 sc-eQTL 6.61e-01 -0.0318 0.0724 0.606 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -486001 sc-eQTL 7.10e-01 0.0319 0.0859 0.606 NK_CD56dim LOneK1K
ENSG00000162607 USP1 671423 sc-eQTL 3.34e-01 -0.0754 0.0778 0.606 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -415652 sc-eQTL 2.69e-01 -0.105 0.0946 0.606 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -485691 eQTL 0.105 -0.0286 0.0176 0.00118 0.0 0.413
ENSG00000142856 ITGB3BP -486001 eQTL 0.0387 -0.0597 0.0289 0.0 0.0 0.413

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina