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Genes within 1Mb (chr1:63085020:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -508391 sc-eQTL 1.82e-01 0.103 0.077 0.436 B L1
ENSG00000088035 ALG6 -282555 sc-eQTL 4.92e-01 0.0552 0.0801 0.436 B L1
ENSG00000116641 DOCK7 396634 sc-eQTL 2.97e-01 0.0835 0.0799 0.436 B L1
ENSG00000125703 ATG4C 300888 sc-eQTL 3.91e-01 0.0479 0.0556 0.436 B L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.59e-01 0.1 0.0884 0.436 B L1
ENSG00000162607 USP1 648723 sc-eQTL 3.58e-01 0.0708 0.0768 0.436 B L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.09e-01 0.0601 0.0907 0.436 B L1
ENSG00000079739 PGM1 -508391 sc-eQTL 1.36e-01 0.0997 0.0666 0.436 CD4T L1
ENSG00000088035 ALG6 -282555 sc-eQTL 2.02e-01 0.0941 0.0736 0.436 CD4T L1
ENSG00000116641 DOCK7 396634 sc-eQTL 4.49e-01 -0.0567 0.0747 0.436 CD4T L1
ENSG00000125703 ATG4C 300888 sc-eQTL 2.13e-01 -0.0751 0.0601 0.436 CD4T L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.77e-01 0.0931 0.0855 0.436 CD4T L1
ENSG00000162607 USP1 648723 sc-eQTL 4.78e-01 0.0416 0.0585 0.436 CD4T L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 6.91e-01 0.0307 0.0769 0.436 CD4T L1
ENSG00000079739 PGM1 -508391 sc-eQTL 7.42e-01 0.0246 0.0744 0.436 CD8T L1
ENSG00000088035 ALG6 -282555 sc-eQTL 3.25e-01 0.0808 0.0819 0.436 CD8T L1
ENSG00000116641 DOCK7 396634 sc-eQTL 1.46e-01 0.121 0.0827 0.436 CD8T L1
ENSG00000125703 ATG4C 300888 sc-eQTL 6.71e-02 -0.144 0.0784 0.436 CD8T L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.39e-01 0.0845 0.0881 0.436 CD8T L1
ENSG00000162607 USP1 648723 sc-eQTL 2.15e-01 0.0852 0.0686 0.436 CD8T L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 9.90e-02 0.145 0.0875 0.436 CD8T L1
ENSG00000079739 PGM1 -508391 sc-eQTL 9.65e-01 0.00363 0.0831 0.428 DC L1
ENSG00000088035 ALG6 -282555 sc-eQTL 6.05e-01 0.0444 0.0857 0.428 DC L1
ENSG00000116641 DOCK7 396634 sc-eQTL 7.22e-01 0.0312 0.0878 0.428 DC L1
ENSG00000125703 ATG4C 300888 sc-eQTL 2.49e-01 -0.0793 0.0685 0.428 DC L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.30e-01 0.0936 0.0959 0.428 DC L1
ENSG00000162607 USP1 648723 sc-eQTL 6.49e-01 -0.0383 0.0839 0.428 DC L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.90e-01 0.0451 0.0836 0.428 DC L1
ENSG00000079739 PGM1 -508391 sc-eQTL 6.57e-01 -0.036 0.081 0.436 Mono L1
ENSG00000088035 ALG6 -282555 sc-eQTL 3.75e-01 -0.075 0.0844 0.436 Mono L1
ENSG00000116641 DOCK7 396634 sc-eQTL 9.69e-01 -0.00317 0.0818 0.436 Mono L1
ENSG00000125703 ATG4C 300888 sc-eQTL 9.95e-01 -0.000374 0.0553 0.436 Mono L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.42e-02 0.184 0.0864 0.436 Mono L1
ENSG00000162607 USP1 648723 sc-eQTL 3.38e-01 -0.0687 0.0716 0.436 Mono L1
ENSG00000240563 L1TD1 890171 sc-eQTL 1.91e-01 -0.0874 0.0667 0.436 Mono L1
ENSG00000079739 PGM1 -508391 sc-eQTL 5.35e-01 -0.0426 0.0686 0.438 NK L1
ENSG00000088035 ALG6 -282555 sc-eQTL 9.30e-01 -0.00708 0.0805 0.438 NK L1
ENSG00000116641 DOCK7 396634 sc-eQTL 4.79e-01 0.0469 0.0662 0.438 NK L1
ENSG00000125703 ATG4C 300888 sc-eQTL 3.19e-01 0.0709 0.071 0.438 NK L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 7.84e-01 0.0242 0.0884 0.438 NK L1
ENSG00000162607 USP1 648723 sc-eQTL 9.24e-01 0.00757 0.079 0.438 NK L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.85e-01 0.0524 0.096 0.438 NK L1
ENSG00000079739 PGM1 -508391 sc-eQTL 2.40e-01 -0.091 0.0772 0.436 Other_T L1
ENSG00000088035 ALG6 -282555 sc-eQTL 4.77e-01 0.0554 0.0778 0.436 Other_T L1
ENSG00000116641 DOCK7 396634 sc-eQTL 8.14e-01 -0.0187 0.0795 0.436 Other_T L1
ENSG00000125703 ATG4C 300888 sc-eQTL 8.37e-01 -0.0142 0.0688 0.436 Other_T L1
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.82e-02 0.133 0.0603 0.436 Other_T L1
ENSG00000162607 USP1 648723 sc-eQTL 8.71e-02 -0.0903 0.0525 0.436 Other_T L1
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.84e-01 0.0137 0.0942 0.436 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -508391 sc-eQTL 9.02e-01 0.0131 0.106 0.423 B_Activated L2
ENSG00000088035 ALG6 -282555 sc-eQTL 4.90e-02 0.199 0.101 0.423 B_Activated L2
ENSG00000116641 DOCK7 396634 sc-eQTL 1.62e-01 0.132 0.0941 0.423 B_Activated L2
ENSG00000125703 ATG4C 300888 sc-eQTL 6.43e-02 -0.184 0.0986 0.423 B_Activated L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 8.82e-01 -0.0145 0.0973 0.423 B_Activated L2
ENSG00000162607 USP1 648723 sc-eQTL 5.51e-01 0.0629 0.105 0.423 B_Activated L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.48e-01 -0.0177 0.0921 0.423 B_Activated L2
ENSG00000079739 PGM1 -508391 sc-eQTL 4.12e-01 0.0763 0.0929 0.438 B_Intermediate L2
ENSG00000088035 ALG6 -282555 sc-eQTL 1.74e-01 0.128 0.0941 0.438 B_Intermediate L2
ENSG00000116641 DOCK7 396634 sc-eQTL 6.15e-01 -0.0454 0.0902 0.438 B_Intermediate L2
ENSG00000125703 ATG4C 300888 sc-eQTL 4.67e-01 0.0556 0.0763 0.438 B_Intermediate L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.08e-01 0.146 0.0905 0.438 B_Intermediate L2
ENSG00000162607 USP1 648723 sc-eQTL 4.61e-01 0.067 0.0908 0.438 B_Intermediate L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.27e-01 -0.0197 0.0902 0.438 B_Intermediate L2
ENSG00000079739 PGM1 -508391 sc-eQTL 5.56e-01 0.0544 0.0923 0.433 B_Memory L2
ENSG00000088035 ALG6 -282555 sc-eQTL 9.09e-01 -0.0107 0.0939 0.433 B_Memory L2
ENSG00000116641 DOCK7 396634 sc-eQTL 3.30e-01 -0.0858 0.0879 0.433 B_Memory L2
ENSG00000125703 ATG4C 300888 sc-eQTL 2.42e-01 -0.098 0.0835 0.433 B_Memory L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 4.36e-02 0.193 0.0949 0.433 B_Memory L2
ENSG00000162607 USP1 648723 sc-eQTL 7.82e-01 0.0268 0.0966 0.433 B_Memory L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.93e-01 -0.051 0.0951 0.433 B_Memory L2
ENSG00000079739 PGM1 -508391 sc-eQTL 5.59e-01 0.0538 0.092 0.436 B_Naive1 L2
ENSG00000088035 ALG6 -282555 sc-eQTL 4.57e-01 0.0688 0.0923 0.436 B_Naive1 L2
ENSG00000116641 DOCK7 396634 sc-eQTL 2.40e-01 0.104 0.0883 0.436 B_Naive1 L2
ENSG00000125703 ATG4C 300888 sc-eQTL 4.48e-01 0.0518 0.0681 0.436 B_Naive1 L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 5.42e-01 0.0553 0.0904 0.436 B_Naive1 L2
ENSG00000162607 USP1 648723 sc-eQTL 2.54e-01 0.0907 0.0793 0.436 B_Naive1 L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.84e-02 0.182 0.0958 0.436 B_Naive1 L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.29e-01 0.0891 0.0911 0.436 B_Naive2 L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.62e-01 -0.107 0.0949 0.436 B_Naive2 L2
ENSG00000116641 DOCK7 396634 sc-eQTL 3.45e-01 0.0865 0.0913 0.436 B_Naive2 L2
ENSG00000125703 ATG4C 300888 sc-eQTL 6.37e-01 0.0416 0.088 0.436 B_Naive2 L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 5.19e-01 -0.0616 0.0954 0.436 B_Naive2 L2
ENSG00000162607 USP1 648723 sc-eQTL 8.42e-01 0.0181 0.0909 0.436 B_Naive2 L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 4.26e-01 -0.0757 0.0949 0.436 B_Naive2 L2
ENSG00000079739 PGM1 -508391 sc-eQTL 5.60e-01 0.0541 0.0925 0.432 CD4_CTL L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.31e-01 0.117 0.0975 0.432 CD4_CTL L2
ENSG00000116641 DOCK7 396634 sc-eQTL 8.95e-01 -0.0113 0.0856 0.432 CD4_CTL L2
ENSG00000125703 ATG4C 300888 sc-eQTL 5.53e-01 0.0525 0.0885 0.432 CD4_CTL L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.83e-01 -0.102 0.0944 0.432 CD4_CTL L2
ENSG00000162607 USP1 648723 sc-eQTL 9.20e-02 0.152 0.0895 0.432 CD4_CTL L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 3.96e-01 -0.0764 0.0898 0.432 CD4_CTL L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.40e-01 0.0715 0.0748 0.436 CD4_Naive L2
ENSG00000088035 ALG6 -282555 sc-eQTL 3.64e-01 0.074 0.0813 0.436 CD4_Naive L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.94e-01 -0.000554 0.0801 0.436 CD4_Naive L2
ENSG00000125703 ATG4C 300888 sc-eQTL 3.41e-02 -0.149 0.07 0.436 CD4_Naive L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 5.21e-01 0.0556 0.0864 0.436 CD4_Naive L2
ENSG00000162607 USP1 648723 sc-eQTL 3.54e-01 0.0613 0.0659 0.436 CD4_Naive L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 9.56e-01 -0.00475 0.0859 0.436 CD4_Naive L2
ENSG00000079739 PGM1 -508391 sc-eQTL 4.37e-02 0.156 0.077 0.436 CD4_TCM L2
ENSG00000088035 ALG6 -282555 sc-eQTL 3.96e-01 0.0767 0.0901 0.436 CD4_TCM L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.72e-03 -0.206 0.0788 0.436 CD4_TCM L2
ENSG00000125703 ATG4C 300888 sc-eQTL 4.90e-01 -0.0538 0.0778 0.436 CD4_TCM L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 7.56e-01 0.0286 0.0918 0.436 CD4_TCM L2
ENSG00000162607 USP1 648723 sc-eQTL 5.95e-01 0.04 0.0752 0.436 CD4_TCM L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.81e-01 0.0491 0.0888 0.436 CD4_TCM L2
ENSG00000079739 PGM1 -508391 sc-eQTL 8.24e-01 0.0204 0.0916 0.436 CD4_TEM L2
ENSG00000088035 ALG6 -282555 sc-eQTL 3.84e-01 0.0802 0.0919 0.436 CD4_TEM L2
ENSG00000116641 DOCK7 396634 sc-eQTL 2.98e-01 0.0935 0.0895 0.436 CD4_TEM L2
ENSG00000125703 ATG4C 300888 sc-eQTL 1.35e-01 0.13 0.0867 0.436 CD4_TEM L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 5.21e-01 0.0578 0.0899 0.436 CD4_TEM L2
ENSG00000162607 USP1 648723 sc-eQTL 2.62e-01 -0.0956 0.085 0.436 CD4_TEM L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 1.10e-01 0.149 0.0927 0.436 CD4_TEM L2
ENSG00000079739 PGM1 -508391 sc-eQTL 9.00e-01 -0.0106 0.0846 0.436 CD8_CTL L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.73e-01 0.0986 0.0897 0.436 CD8_CTL L2
ENSG00000116641 DOCK7 396634 sc-eQTL 1.37e-01 0.127 0.0849 0.436 CD8_CTL L2
ENSG00000125703 ATG4C 300888 sc-eQTL 6.55e-01 -0.0407 0.0908 0.436 CD8_CTL L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 7.35e-02 0.169 0.0938 0.436 CD8_CTL L2
ENSG00000162607 USP1 648723 sc-eQTL 2.04e-01 0.107 0.0843 0.436 CD8_CTL L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 4.39e-01 -0.075 0.0967 0.436 CD8_CTL L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.11e-01 0.0855 0.0842 0.436 CD8_Naive L2
ENSG00000088035 ALG6 -282555 sc-eQTL 5.98e-01 0.0461 0.0873 0.436 CD8_Naive L2
ENSG00000116641 DOCK7 396634 sc-eQTL 1.50e-01 0.13 0.0899 0.436 CD8_Naive L2
ENSG00000125703 ATG4C 300888 sc-eQTL 4.47e-01 -0.0659 0.0866 0.436 CD8_Naive L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.22e-01 0.107 0.0875 0.436 CD8_Naive L2
ENSG00000162607 USP1 648723 sc-eQTL 6.87e-01 0.0299 0.0742 0.436 CD8_Naive L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 2.03e-01 0.105 0.0824 0.436 CD8_Naive L2
ENSG00000079739 PGM1 -508391 sc-eQTL 1.55e-01 -0.13 0.0911 0.44 CD8_TCM L2
ENSG00000088035 ALG6 -282555 sc-eQTL 5.51e-01 0.0554 0.0926 0.44 CD8_TCM L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.39e-01 -0.00697 0.0905 0.44 CD8_TCM L2
ENSG00000125703 ATG4C 300888 sc-eQTL 2.41e-02 -0.208 0.0913 0.44 CD8_TCM L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.87e-01 -0.0777 0.0898 0.44 CD8_TCM L2
ENSG00000162607 USP1 648723 sc-eQTL 1.17e-01 0.136 0.086 0.44 CD8_TCM L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 2.79e-01 0.0993 0.0914 0.44 CD8_TCM L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.48e-01 -0.0903 0.0959 0.432 CD8_TEM L2
ENSG00000088035 ALG6 -282555 sc-eQTL 9.28e-01 0.00869 0.0965 0.432 CD8_TEM L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.23e-01 -0.0091 0.0936 0.432 CD8_TEM L2
ENSG00000125703 ATG4C 300888 sc-eQTL 5.70e-01 -0.0512 0.0899 0.432 CD8_TEM L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 8.13e-01 0.0231 0.0973 0.432 CD8_TEM L2
ENSG00000162607 USP1 648723 sc-eQTL 5.24e-01 0.0593 0.0928 0.432 CD8_TEM L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 2.89e-02 0.205 0.0933 0.432 CD8_TEM L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.93e-01 -0.0765 0.0893 0.433 MAIT L2
ENSG00000088035 ALG6 -282555 sc-eQTL 3.51e-01 0.0826 0.0884 0.433 MAIT L2
ENSG00000116641 DOCK7 396634 sc-eQTL 6.62e-01 0.0372 0.0848 0.433 MAIT L2
ENSG00000125703 ATG4C 300888 sc-eQTL 8.37e-01 0.0185 0.0895 0.433 MAIT L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.93e-01 0.0943 0.0894 0.433 MAIT L2
ENSG00000162607 USP1 648723 sc-eQTL 8.68e-01 -0.0148 0.0889 0.433 MAIT L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 9.32e-01 0.00793 0.0923 0.433 MAIT L2
ENSG00000079739 PGM1 -508391 sc-eQTL 3.01e-01 0.0934 0.09 0.438 NK_CD56bright L2
ENSG00000088035 ALG6 -282555 sc-eQTL 6.73e-01 -0.0391 0.0925 0.438 NK_CD56bright L2
ENSG00000116641 DOCK7 396634 sc-eQTL 6.77e-01 0.0334 0.0801 0.438 NK_CD56bright L2
ENSG00000125703 ATG4C 300888 sc-eQTL 1.26e-01 0.137 0.089 0.438 NK_CD56bright L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.19e-01 -0.145 0.0927 0.438 NK_CD56bright L2
ENSG00000162607 USP1 648723 sc-eQTL 6.39e-01 0.0451 0.0961 0.438 NK_CD56bright L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 7.76e-01 -0.0262 0.092 0.438 NK_CD56bright L2
ENSG00000079739 PGM1 -508391 sc-eQTL 8.17e-01 -0.0165 0.0714 0.438 NK_CD56dim L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.54e-01 -0.103 0.0904 0.438 NK_CD56dim L2
ENSG00000116641 DOCK7 396634 sc-eQTL 4.71e-01 0.0569 0.0788 0.438 NK_CD56dim L2
ENSG00000125703 ATG4C 300888 sc-eQTL 2.67e-01 -0.089 0.0799 0.438 NK_CD56dim L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 9.08e-01 -0.0105 0.0912 0.438 NK_CD56dim L2
ENSG00000162607 USP1 648723 sc-eQTL 6.58e-01 0.0392 0.0884 0.438 NK_CD56dim L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 6.28e-01 0.0478 0.0984 0.438 NK_CD56dim L2
ENSG00000079739 PGM1 -508391 sc-eQTL 9.31e-01 0.00849 0.0972 0.429 NK_HLA L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.89e-03 0.297 0.0985 0.429 NK_HLA L2
ENSG00000116641 DOCK7 396634 sc-eQTL 2.77e-01 0.0838 0.0769 0.429 NK_HLA L2
ENSG00000125703 ATG4C 300888 sc-eQTL 3.22e-01 0.0888 0.0894 0.429 NK_HLA L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 9.91e-01 0.00107 0.0941 0.429 NK_HLA L2
ENSG00000162607 USP1 648723 sc-eQTL 3.97e-01 -0.0834 0.0983 0.429 NK_HLA L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 4.45e-01 -0.0685 0.0895 0.429 NK_HLA L2
ENSG00000079739 PGM1 -508391 sc-eQTL 1.05e-01 -0.126 0.0776 0.438 NK_cytokine L2
ENSG00000088035 ALG6 -282555 sc-eQTL 6.75e-01 0.037 0.0882 0.438 NK_cytokine L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.53e-01 0.00482 0.0818 0.438 NK_cytokine L2
ENSG00000125703 ATG4C 300888 sc-eQTL 1.35e-01 0.125 0.0832 0.438 NK_cytokine L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.07e-01 0.109 0.0863 0.438 NK_cytokine L2
ENSG00000162607 USP1 648723 sc-eQTL 1.99e-01 -0.117 0.0907 0.438 NK_cytokine L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 5.90e-01 0.0497 0.0923 0.438 NK_cytokine L2
ENSG00000079739 PGM1 -508391 sc-eQTL 8.06e-01 0.0286 0.116 0.437 PB L2
ENSG00000088035 ALG6 -282555 sc-eQTL 7.52e-01 0.0386 0.122 0.437 PB L2
ENSG00000116641 DOCK7 396634 sc-eQTL 3.86e-01 0.113 0.13 0.437 PB L2
ENSG00000125703 ATG4C 300888 sc-eQTL 5.08e-01 0.0754 0.113 0.437 PB L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 2.55e-01 -0.129 0.113 0.437 PB L2
ENSG00000162607 USP1 648723 sc-eQTL 9.98e-01 -0.000343 0.113 0.437 PB L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.97e-01 -0.0162 0.125 0.437 PB L2
ENSG00000079739 PGM1 -508391 sc-eQTL 2.71e-01 -0.0931 0.0843 0.437 Pro_T L2
ENSG00000088035 ALG6 -282555 sc-eQTL 9.06e-01 0.0102 0.086 0.437 Pro_T L2
ENSG00000116641 DOCK7 396634 sc-eQTL 6.75e-02 -0.157 0.0856 0.437 Pro_T L2
ENSG00000125703 ATG4C 300888 sc-eQTL 1.00e-02 -0.193 0.0744 0.437 Pro_T L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.64e-01 0.105 0.0755 0.437 Pro_T L2
ENSG00000162607 USP1 648723 sc-eQTL 6.62e-01 -0.0228 0.0521 0.437 Pro_T L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 1.14e-01 0.139 0.0875 0.437 Pro_T L2
ENSG00000079739 PGM1 -508391 sc-eQTL 4.96e-02 0.172 0.0872 0.436 Treg L2
ENSG00000088035 ALG6 -282555 sc-eQTL 7.22e-01 -0.0336 0.0941 0.436 Treg L2
ENSG00000116641 DOCK7 396634 sc-eQTL 1.46e-01 -0.125 0.086 0.436 Treg L2
ENSG00000125703 ATG4C 300888 sc-eQTL 3.97e-01 0.0748 0.0881 0.436 Treg L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.38e-01 0.137 0.0919 0.436 Treg L2
ENSG00000162607 USP1 648723 sc-eQTL 2.93e-01 0.0941 0.0891 0.436 Treg L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 1.72e-01 -0.121 0.088 0.436 Treg L2
ENSG00000079739 PGM1 -508391 sc-eQTL 9.03e-01 -0.0108 0.0885 0.429 cDC L2
ENSG00000088035 ALG6 -282555 sc-eQTL 5.83e-01 -0.0493 0.0897 0.429 cDC L2
ENSG00000116641 DOCK7 396634 sc-eQTL 6.52e-01 0.0398 0.0881 0.429 cDC L2
ENSG00000125703 ATG4C 300888 sc-eQTL 7.12e-01 -0.0283 0.0765 0.429 cDC L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 7.52e-01 0.0307 0.0969 0.429 cDC L2
ENSG00000162607 USP1 648723 sc-eQTL 6.93e-01 -0.0341 0.0863 0.429 cDC L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 1.28e-01 0.118 0.0774 0.429 cDC L2
ENSG00000079739 PGM1 -508391 sc-eQTL 4.60e-01 -0.0625 0.0845 0.436 cMono_IL1B L2
ENSG00000088035 ALG6 -282555 sc-eQTL 5.79e-01 -0.047 0.0846 0.436 cMono_IL1B L2
ENSG00000116641 DOCK7 396634 sc-eQTL 8.75e-01 -0.014 0.0893 0.436 cMono_IL1B L2
ENSG00000125703 ATG4C 300888 sc-eQTL 4.03e-01 0.0525 0.0627 0.436 cMono_IL1B L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.33e-01 0.134 0.0885 0.436 cMono_IL1B L2
ENSG00000162607 USP1 648723 sc-eQTL 1.08e-01 -0.126 0.078 0.436 cMono_IL1B L2
ENSG00000240563 L1TD1 890171 sc-eQTL 3.97e-01 -0.0668 0.0787 0.436 cMono_IL1B L2
ENSG00000079739 PGM1 -508391 sc-eQTL 8.95e-01 0.0124 0.0935 0.436 cMono_S100A L2
ENSG00000088035 ALG6 -282555 sc-eQTL 8.53e-01 -0.0176 0.0948 0.436 cMono_S100A L2
ENSG00000116641 DOCK7 396634 sc-eQTL 5.32e-01 -0.055 0.0878 0.436 cMono_S100A L2
ENSG00000125703 ATG4C 300888 sc-eQTL 5.23e-01 -0.0487 0.076 0.436 cMono_S100A L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.85e-01 0.114 0.0855 0.436 cMono_S100A L2
ENSG00000162607 USP1 648723 sc-eQTL 6.49e-01 0.0402 0.0883 0.436 cMono_S100A L2
ENSG00000240563 L1TD1 890171 sc-eQTL 5.75e-01 -0.0412 0.0735 0.436 cMono_S100A L2
ENSG00000079739 PGM1 -508391 sc-eQTL 9.43e-01 0.00759 0.106 0.427 gdT L2
ENSG00000088035 ALG6 -282555 sc-eQTL 9.67e-02 0.187 0.112 0.427 gdT L2
ENSG00000116641 DOCK7 396634 sc-eQTL 2.25e-01 -0.134 0.11 0.427 gdT L2
ENSG00000125703 ATG4C 300888 sc-eQTL 5.80e-01 0.0585 0.106 0.427 gdT L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.01e-01 0.184 0.111 0.427 gdT L2
ENSG00000162607 USP1 648723 sc-eQTL 4.38e-02 -0.213 0.105 0.427 gdT L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 1.22e-01 -0.171 0.11 0.427 gdT L2
ENSG00000079739 PGM1 -508391 sc-eQTL 7.69e-01 -0.0279 0.0949 0.436 intMono L2
ENSG00000088035 ALG6 -282555 sc-eQTL 2.55e-01 -0.101 0.0881 0.436 intMono L2
ENSG00000116641 DOCK7 396634 sc-eQTL 9.28e-03 0.233 0.0888 0.436 intMono L2
ENSG00000125703 ATG4C 300888 sc-eQTL 8.94e-01 -0.0115 0.0862 0.436 intMono L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.03e-01 -0.0978 0.0947 0.436 intMono L2
ENSG00000162607 USP1 648723 sc-eQTL 8.65e-01 -0.0165 0.0966 0.436 intMono L2
ENSG00000240563 L1TD1 890171 sc-eQTL 5.69e-02 -0.135 0.0704 0.436 intMono L2
ENSG00000079739 PGM1 -508391 sc-eQTL 4.17e-01 0.0703 0.0863 0.43 ncMono L2
ENSG00000088035 ALG6 -282555 sc-eQTL 9.56e-01 -0.00525 0.095 0.43 ncMono L2
ENSG00000116641 DOCK7 396634 sc-eQTL 7.14e-01 0.0343 0.0935 0.43 ncMono L2
ENSG00000125703 ATG4C 300888 sc-eQTL 8.24e-01 -0.0194 0.0873 0.43 ncMono L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 4.55e-01 0.0684 0.0912 0.43 ncMono L2
ENSG00000162607 USP1 648723 sc-eQTL 1.24e-01 -0.143 0.0928 0.43 ncMono L2
ENSG00000240563 L1TD1 890171 sc-eQTL 6.98e-01 -0.0257 0.0662 0.43 ncMono L2
ENSG00000079739 PGM1 -508391 sc-eQTL 2.13e-01 0.126 0.1 0.444 pDC L2
ENSG00000088035 ALG6 -282555 sc-eQTL 8.81e-01 -0.0147 0.0983 0.444 pDC L2
ENSG00000116641 DOCK7 396634 sc-eQTL 3.26e-01 -0.0986 0.1 0.444 pDC L2
ENSG00000125703 ATG4C 300888 sc-eQTL 8.97e-01 0.0117 0.0901 0.444 pDC L2
ENSG00000142856 ITGB3BP -508701 sc-eQTL 3.92e-01 0.0866 0.101 0.444 pDC L2
ENSG00000162607 USP1 648723 sc-eQTL 4.68e-01 -0.0749 0.103 0.444 pDC L2
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.61e-01 0.0157 0.0895 0.444 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -508391 sc-eQTL 7.64e-01 0.026 0.0865 0.436 B_Memory LOneK1K
ENSG00000088035 ALG6 -282555 sc-eQTL 1.92e-01 0.125 0.0953 0.436 B_Memory LOneK1K
ENSG00000116641 DOCK7 396634 sc-eQTL 6.12e-01 -0.0422 0.083 0.436 B_Memory LOneK1K
ENSG00000125703 ATG4C 300888 sc-eQTL 9.82e-01 -0.00151 0.0671 0.436 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -508701 sc-eQTL 8.51e-02 0.152 0.0876 0.436 B_Memory LOneK1K
ENSG00000162607 USP1 648723 sc-eQTL 5.71e-01 0.0485 0.0856 0.436 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -438352 sc-eQTL 8.34e-01 -0.0193 0.0919 0.436 B_Memory LOneK1K
ENSG00000079739 PGM1 -508391 sc-eQTL 3.90e-01 0.0771 0.0895 0.436 B_Naive LOneK1K
ENSG00000088035 ALG6 -282555 sc-eQTL 9.55e-01 -0.00526 0.0924 0.436 B_Naive LOneK1K
ENSG00000116641 DOCK7 396634 sc-eQTL 6.52e-02 0.159 0.0855 0.436 B_Naive LOneK1K
ENSG00000125703 ATG4C 300888 sc-eQTL 5.18e-01 0.0426 0.0657 0.436 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -508701 sc-eQTL 8.43e-01 0.0184 0.093 0.436 B_Naive LOneK1K
ENSG00000162607 USP1 648723 sc-eQTL 2.23e-01 0.0974 0.0796 0.436 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -438352 sc-eQTL 2.90e-01 0.099 0.0933 0.436 B_Naive LOneK1K
ENSG00000079739 PGM1 -508391 sc-eQTL 6.80e-01 -0.0357 0.0864 0.436 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -282555 sc-eQTL 3.37e-01 -0.0803 0.0835 0.436 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 396634 sc-eQTL 7.53e-01 -0.0266 0.0843 0.436 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 300888 sc-eQTL 8.42e-01 0.0117 0.0583 0.436 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -508701 sc-eQTL 1.53e-02 0.208 0.085 0.436 CD14_Mono LOneK1K
ENSG00000162607 USP1 648723 sc-eQTL 3.32e-01 -0.0715 0.0735 0.436 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 890171 sc-eQTL 6.46e-01 -0.0367 0.0798 0.436 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -508391 sc-eQTL 9.89e-01 -0.0011 0.0834 0.438 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -282555 sc-eQTL 4.46e-01 -0.0723 0.0946 0.438 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 396634 sc-eQTL 1.04e-01 0.152 0.0931 0.438 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 300888 sc-eQTL 5.49e-01 -0.0479 0.0798 0.438 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -508701 sc-eQTL 8.27e-01 -0.0203 0.0928 0.438 CD16_Mono LOneK1K
ENSG00000162607 USP1 648723 sc-eQTL 4.29e-01 -0.0689 0.087 0.438 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 890171 sc-eQTL 1.78e-01 -0.08 0.0592 0.438 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -508391 sc-eQTL 2.67e-01 -0.0772 0.0694 0.438 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -282555 sc-eQTL 9.44e-01 0.00588 0.0835 0.438 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 396634 sc-eQTL 5.27e-01 0.0474 0.0748 0.438 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 300888 sc-eQTL 4.55e-01 0.0558 0.0746 0.438 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -508701 sc-eQTL 5.84e-01 0.0485 0.0885 0.438 NK_CD56dim LOneK1K
ENSG00000162607 USP1 648723 sc-eQTL 5.63e-01 -0.0465 0.0803 0.438 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -438352 sc-eQTL 6.98e-01 0.0379 0.0977 0.438 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -508391 eQTL 0.0101 0.0474 0.0184 0.0 0.0 0.407
ENSG00000088035 ALG6 -282555 eQTL 0.0298 0.0298 0.0137 0.0 0.0 0.407
ENSG00000132855 ANGPTL3 487533 pQTL 0.0444 -0.0606 0.0301 0.0 0.0 0.411

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142856 \N -508701 6.09e-07 3.11e-07 1.05e-07 2.58e-07 1.07e-07 1.57e-07 4.09e-07 9.78e-08 2.78e-07 1.89e-07 3.92e-07 2.98e-07 4.88e-07 9.48e-08 1.45e-07 1.76e-07 1.73e-07 3.12e-07 1.51e-07 8.25e-08 1.76e-07 2.76e-07 2.67e-07 1.13e-07 4.46e-07 2.32e-07 2.08e-07 1.88e-07 2.57e-07 3.15e-07 1.93e-07 7.49e-08 5.73e-08 1.27e-07 1.95e-07 6.85e-08 7.74e-08 6.97e-08 5.98e-08 7.5e-08 5.19e-08 2.91e-07 1.67e-08 2.04e-08 9.64e-08 1.35e-08 7.36e-08 3.3e-09 5.54e-08