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Genes within 1Mb (chr1:63083611:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -509800 sc-eQTL 1.89e-02 0.184 0.0776 0.641 B L1
ENSG00000088035 ALG6 -283964 sc-eQTL 1.42e-01 -0.12 0.0811 0.641 B L1
ENSG00000116641 DOCK7 395225 sc-eQTL 1.15e-01 0.128 0.081 0.641 B L1
ENSG00000125703 ATG4C 299479 sc-eQTL 7.14e-01 0.0208 0.0566 0.641 B L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.47e-02 0.18 0.0893 0.641 B L1
ENSG00000162607 USP1 647314 sc-eQTL 9.14e-02 0.132 0.0777 0.641 B L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.19e-01 0.144 0.0918 0.641 B L1
ENSG00000079739 PGM1 -509800 sc-eQTL 1.52e-02 0.165 0.0676 0.641 CD4T L1
ENSG00000088035 ALG6 -283964 sc-eQTL 1.12e-01 0.12 0.0752 0.641 CD4T L1
ENSG00000116641 DOCK7 395225 sc-eQTL 6.86e-01 -0.031 0.0766 0.641 CD4T L1
ENSG00000125703 ATG4C 299479 sc-eQTL 1.65e-01 -0.0859 0.0616 0.641 CD4T L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 9.14e-03 0.227 0.0864 0.641 CD4T L1
ENSG00000162607 USP1 647314 sc-eQTL 5.42e-01 0.0366 0.06 0.641 CD4T L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 9.83e-01 -0.00166 0.0788 0.641 CD4T L1
ENSG00000079739 PGM1 -509800 sc-eQTL 5.78e-01 0.0415 0.0744 0.641 CD8T L1
ENSG00000088035 ALG6 -283964 sc-eQTL 1.43e-01 0.12 0.0817 0.641 CD8T L1
ENSG00000116641 DOCK7 395225 sc-eQTL 1.93e-01 0.108 0.0828 0.641 CD8T L1
ENSG00000125703 ATG4C 299479 sc-eQTL 8.06e-03 -0.208 0.0777 0.641 CD8T L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 5.86e-02 0.167 0.0876 0.641 CD8T L1
ENSG00000162607 USP1 647314 sc-eQTL 2.29e-01 0.0827 0.0686 0.641 CD8T L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.70e-01 0.121 0.0877 0.641 CD8T L1
ENSG00000079739 PGM1 -509800 sc-eQTL 4.43e-01 0.0637 0.0829 0.635 DC L1
ENSG00000088035 ALG6 -283964 sc-eQTL 9.08e-01 0.00988 0.0857 0.635 DC L1
ENSG00000116641 DOCK7 395225 sc-eQTL 4.02e-02 0.179 0.0869 0.635 DC L1
ENSG00000125703 ATG4C 299479 sc-eQTL 8.35e-01 0.0143 0.0687 0.635 DC L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.64e-02 0.212 0.0949 0.635 DC L1
ENSG00000162607 USP1 647314 sc-eQTL 4.78e-01 0.0596 0.0837 0.635 DC L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.66e-01 0.116 0.0832 0.635 DC L1
ENSG00000079739 PGM1 -509800 sc-eQTL 9.55e-01 -0.00462 0.0815 0.641 Mono L1
ENSG00000088035 ALG6 -283964 sc-eQTL 4.42e-01 -0.0654 0.0849 0.641 Mono L1
ENSG00000116641 DOCK7 395225 sc-eQTL 8.44e-01 0.0162 0.0823 0.641 Mono L1
ENSG00000125703 ATG4C 299479 sc-eQTL 8.53e-01 0.0103 0.0556 0.641 Mono L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 9.27e-03 0.227 0.0865 0.641 Mono L1
ENSG00000162607 USP1 647314 sc-eQTL 6.80e-01 -0.0298 0.0721 0.641 Mono L1
ENSG00000240563 L1TD1 888762 sc-eQTL 9.80e-02 -0.111 0.0669 0.641 Mono L1
ENSG00000079739 PGM1 -509800 sc-eQTL 7.35e-01 -0.0235 0.0693 0.642 NK L1
ENSG00000088035 ALG6 -283964 sc-eQTL 8.91e-01 -0.0111 0.0812 0.642 NK L1
ENSG00000116641 DOCK7 395225 sc-eQTL 1.92e-01 0.0872 0.0666 0.642 NK L1
ENSG00000125703 ATG4C 299479 sc-eQTL 1.71e-01 0.0983 0.0715 0.642 NK L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 5.79e-01 0.0496 0.0893 0.642 NK L1
ENSG00000162607 USP1 647314 sc-eQTL 8.77e-01 -0.0124 0.0798 0.642 NK L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.81e-01 -0.027 0.097 0.642 NK L1
ENSG00000079739 PGM1 -509800 sc-eQTL 3.70e-01 -0.0702 0.0781 0.641 Other_T L1
ENSG00000088035 ALG6 -283964 sc-eQTL 8.16e-01 0.0183 0.0786 0.641 Other_T L1
ENSG00000116641 DOCK7 395225 sc-eQTL 8.30e-01 -0.0172 0.0803 0.641 Other_T L1
ENSG00000125703 ATG4C 299479 sc-eQTL 9.29e-01 0.00617 0.0695 0.641 Other_T L1
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.30e-01 0.0739 0.0614 0.641 Other_T L1
ENSG00000162607 USP1 647314 sc-eQTL 7.11e-02 -0.0962 0.053 0.641 Other_T L1
ENSG00000203965 EFCAB7 -439761 sc-eQTL 5.07e-01 -0.0631 0.095 0.641 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -509800 sc-eQTL 6.65e-01 0.0484 0.112 0.635 B_Activated L2
ENSG00000088035 ALG6 -283964 sc-eQTL 1.48e-01 0.154 0.106 0.635 B_Activated L2
ENSG00000116641 DOCK7 395225 sc-eQTL 1.21e-02 0.248 0.0977 0.635 B_Activated L2
ENSG00000125703 ATG4C 299479 sc-eQTL 9.53e-01 -0.00623 0.105 0.635 B_Activated L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 8.00e-01 0.0259 0.102 0.635 B_Activated L2
ENSG00000162607 USP1 647314 sc-eQTL 1.99e-01 0.142 0.11 0.635 B_Activated L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 5.40e-01 -0.0594 0.0967 0.635 B_Activated L2
ENSG00000079739 PGM1 -509800 sc-eQTL 4.14e-02 0.193 0.0943 0.644 B_Intermediate L2
ENSG00000088035 ALG6 -283964 sc-eQTL 4.86e-01 0.0674 0.0966 0.644 B_Intermediate L2
ENSG00000116641 DOCK7 395225 sc-eQTL 4.36e-01 -0.072 0.0923 0.644 B_Intermediate L2
ENSG00000125703 ATG4C 299479 sc-eQTL 9.51e-01 0.00477 0.0782 0.644 B_Intermediate L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.83e-02 0.192 0.0922 0.644 B_Intermediate L2
ENSG00000162607 USP1 647314 sc-eQTL 2.40e-01 0.109 0.0927 0.644 B_Intermediate L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.08e-01 0.0346 0.0923 0.644 B_Intermediate L2
ENSG00000079739 PGM1 -509800 sc-eQTL 5.99e-02 0.175 0.0924 0.64 B_Memory L2
ENSG00000088035 ALG6 -283964 sc-eQTL 2.67e-01 -0.105 0.0944 0.64 B_Memory L2
ENSG00000116641 DOCK7 395225 sc-eQTL 8.25e-01 -0.0197 0.0888 0.64 B_Memory L2
ENSG00000125703 ATG4C 299479 sc-eQTL 8.09e-01 0.0204 0.0844 0.64 B_Memory L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.56e-01 0.11 0.0963 0.64 B_Memory L2
ENSG00000162607 USP1 647314 sc-eQTL 4.76e-01 0.0696 0.0973 0.64 B_Memory L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 3.85e-01 0.0832 0.0957 0.64 B_Memory L2
ENSG00000079739 PGM1 -509800 sc-eQTL 5.39e-01 0.0584 0.0948 0.641 B_Naive1 L2
ENSG00000088035 ALG6 -283964 sc-eQTL 4.23e-01 -0.0764 0.0951 0.641 B_Naive1 L2
ENSG00000116641 DOCK7 395225 sc-eQTL 9.48e-02 0.152 0.0907 0.641 B_Naive1 L2
ENSG00000125703 ATG4C 299479 sc-eQTL 8.33e-01 0.0148 0.0703 0.641 B_Naive1 L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.96e-01 0.0635 0.0932 0.641 B_Naive1 L2
ENSG00000162607 USP1 647314 sc-eQTL 7.95e-02 0.143 0.0814 0.641 B_Naive1 L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 4.38e-02 0.2 0.0986 0.641 B_Naive1 L2
ENSG00000079739 PGM1 -509800 sc-eQTL 7.47e-01 0.03 0.0928 0.642 B_Naive2 L2
ENSG00000088035 ALG6 -283964 sc-eQTL 1.38e-02 -0.237 0.0953 0.642 B_Naive2 L2
ENSG00000116641 DOCK7 395225 sc-eQTL 3.17e-01 0.0931 0.0928 0.642 B_Naive2 L2
ENSG00000125703 ATG4C 299479 sc-eQTL 4.69e-01 0.0648 0.0894 0.642 B_Naive2 L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.03e-01 0.0811 0.0969 0.642 B_Naive2 L2
ENSG00000162607 USP1 647314 sc-eQTL 2.02e-01 0.118 0.0921 0.642 B_Naive2 L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 6.82e-01 -0.0396 0.0966 0.642 B_Naive2 L2
ENSG00000079739 PGM1 -509800 sc-eQTL 3.92e-01 0.0817 0.0952 0.636 CD4_CTL L2
ENSG00000088035 ALG6 -283964 sc-eQTL 3.10e-01 0.102 0.101 0.636 CD4_CTL L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.99e-01 -0.0915 0.0879 0.636 CD4_CTL L2
ENSG00000125703 ATG4C 299479 sc-eQTL 9.46e-01 -0.00616 0.0912 0.636 CD4_CTL L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 8.10e-01 0.0235 0.0975 0.636 CD4_CTL L2
ENSG00000162607 USP1 647314 sc-eQTL 1.51e-01 0.133 0.0923 0.636 CD4_CTL L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 2.35e-01 -0.11 0.0923 0.636 CD4_CTL L2
ENSG00000079739 PGM1 -509800 sc-eQTL 9.78e-02 0.126 0.0757 0.641 CD4_Naive L2
ENSG00000088035 ALG6 -283964 sc-eQTL 1.73e-01 0.113 0.0824 0.641 CD4_Naive L2
ENSG00000116641 DOCK7 395225 sc-eQTL 9.00e-01 0.0103 0.0814 0.641 CD4_Naive L2
ENSG00000125703 ATG4C 299479 sc-eQTL 8.77e-02 -0.123 0.0714 0.641 CD4_Naive L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.84e-02 0.173 0.0871 0.641 CD4_Naive L2
ENSG00000162607 USP1 647314 sc-eQTL 3.53e-01 0.0624 0.067 0.641 CD4_Naive L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.80e-01 -0.0244 0.0873 0.641 CD4_Naive L2
ENSG00000079739 PGM1 -509800 sc-eQTL 3.96e-02 0.162 0.0781 0.641 CD4_TCM L2
ENSG00000088035 ALG6 -283964 sc-eQTL 8.18e-01 0.0211 0.0916 0.641 CD4_TCM L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.60e-02 -0.18 0.0803 0.641 CD4_TCM L2
ENSG00000125703 ATG4C 299479 sc-eQTL 2.00e-01 -0.101 0.0788 0.641 CD4_TCM L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 7.81e-02 0.164 0.0925 0.641 CD4_TCM L2
ENSG00000162607 USP1 647314 sc-eQTL 4.86e-01 0.0533 0.0763 0.641 CD4_TCM L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 8.09e-01 0.0218 0.0902 0.641 CD4_TCM L2
ENSG00000079739 PGM1 -509800 sc-eQTL 2.78e-01 0.102 0.0939 0.641 CD4_TEM L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.59e-01 0.0554 0.0946 0.641 CD4_TEM L2
ENSG00000116641 DOCK7 395225 sc-eQTL 7.22e-01 0.0329 0.0923 0.641 CD4_TEM L2
ENSG00000125703 ATG4C 299479 sc-eQTL 4.99e-01 0.0606 0.0895 0.641 CD4_TEM L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.46e-01 0.0873 0.0923 0.641 CD4_TEM L2
ENSG00000162607 USP1 647314 sc-eQTL 8.32e-01 0.0186 0.0876 0.641 CD4_TEM L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 2.55e-01 0.109 0.0956 0.641 CD4_TEM L2
ENSG00000079739 PGM1 -509800 sc-eQTL 7.71e-01 0.0248 0.0851 0.641 CD8_CTL L2
ENSG00000088035 ALG6 -283964 sc-eQTL 7.58e-01 0.028 0.0905 0.641 CD8_CTL L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.29e-01 0.103 0.0856 0.641 CD8_CTL L2
ENSG00000125703 ATG4C 299479 sc-eQTL 5.00e-01 -0.0616 0.0913 0.641 CD8_CTL L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.12e-02 0.239 0.0936 0.641 CD8_CTL L2
ENSG00000162607 USP1 647314 sc-eQTL 8.26e-01 0.0187 0.0851 0.641 CD8_CTL L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 2.14e-01 -0.121 0.097 0.641 CD8_CTL L2
ENSG00000079739 PGM1 -509800 sc-eQTL 1.86e-01 0.114 0.0862 0.641 CD8_Naive L2
ENSG00000088035 ALG6 -283964 sc-eQTL 6.79e-01 0.0372 0.0896 0.641 CD8_Naive L2
ENSG00000116641 DOCK7 395225 sc-eQTL 6.15e-01 0.0466 0.0926 0.641 CD8_Naive L2
ENSG00000125703 ATG4C 299479 sc-eQTL 3.60e-01 -0.0814 0.0887 0.641 CD8_Naive L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.18e-01 0.14 0.0895 0.641 CD8_Naive L2
ENSG00000162607 USP1 647314 sc-eQTL 2.97e-01 0.0794 0.0759 0.641 CD8_Naive L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.48e-02 0.151 0.0842 0.641 CD8_Naive L2
ENSG00000079739 PGM1 -509800 sc-eQTL 3.98e-01 -0.0787 0.0928 0.644 CD8_TCM L2
ENSG00000088035 ALG6 -283964 sc-eQTL 3.39e-02 0.199 0.093 0.644 CD8_TCM L2
ENSG00000116641 DOCK7 395225 sc-eQTL 4.50e-01 0.0694 0.0917 0.644 CD8_TCM L2
ENSG00000125703 ATG4C 299479 sc-eQTL 1.62e-03 -0.293 0.0915 0.644 CD8_TCM L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 9.76e-01 -0.00275 0.0913 0.644 CD8_TCM L2
ENSG00000162607 USP1 647314 sc-eQTL 1.62e-01 0.123 0.0874 0.644 CD8_TCM L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.55e-01 0.0291 0.093 0.644 CD8_TCM L2
ENSG00000079739 PGM1 -509800 sc-eQTL 4.06e-01 0.0803 0.0964 0.644 CD8_TEM L2
ENSG00000088035 ALG6 -283964 sc-eQTL 7.42e-01 0.032 0.0969 0.644 CD8_TEM L2
ENSG00000116641 DOCK7 395225 sc-eQTL 7.93e-01 0.0248 0.094 0.644 CD8_TEM L2
ENSG00000125703 ATG4C 299479 sc-eQTL 4.09e-01 -0.0747 0.0902 0.644 CD8_TEM L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 8.34e-01 0.0206 0.0978 0.644 CD8_TEM L2
ENSG00000162607 USP1 647314 sc-eQTL 5.31e-01 0.0585 0.0932 0.644 CD8_TEM L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.53e-01 0.135 0.0944 0.644 CD8_TEM L2
ENSG00000079739 PGM1 -509800 sc-eQTL 7.79e-02 -0.16 0.0904 0.641 MAIT L2
ENSG00000088035 ALG6 -283964 sc-eQTL 4.92e-01 0.062 0.09 0.641 MAIT L2
ENSG00000116641 DOCK7 395225 sc-eQTL 7.94e-01 0.0226 0.0863 0.641 MAIT L2
ENSG00000125703 ATG4C 299479 sc-eQTL 4.73e-01 0.0654 0.0909 0.641 MAIT L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.66e-01 0.0666 0.0911 0.641 MAIT L2
ENSG00000162607 USP1 647314 sc-eQTL 3.63e-01 -0.0823 0.0903 0.641 MAIT L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 3.93e-01 -0.0803 0.0938 0.641 MAIT L2
ENSG00000079739 PGM1 -509800 sc-eQTL 9.87e-01 -0.00146 0.0922 0.638 NK_CD56bright L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.54e-01 -0.056 0.0945 0.638 NK_CD56bright L2
ENSG00000116641 DOCK7 395225 sc-eQTL 1.81e-01 0.11 0.0815 0.638 NK_CD56bright L2
ENSG00000125703 ATG4C 299479 sc-eQTL 2.29e-01 0.11 0.0912 0.638 NK_CD56bright L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 6.26e-02 -0.177 0.0945 0.638 NK_CD56bright L2
ENSG00000162607 USP1 647314 sc-eQTL 9.62e-01 -0.00467 0.0983 0.638 NK_CD56bright L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 9.58e-01 -0.00491 0.094 0.638 NK_CD56bright L2
ENSG00000079739 PGM1 -509800 sc-eQTL 2.84e-01 -0.0772 0.0719 0.64 NK_CD56dim L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.39e-01 -0.0563 0.0914 0.64 NK_CD56dim L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.53e-01 0.0909 0.0793 0.64 NK_CD56dim L2
ENSG00000125703 ATG4C 299479 sc-eQTL 5.15e-01 -0.0527 0.0808 0.64 NK_CD56dim L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 5.63e-01 -0.0532 0.0919 0.64 NK_CD56dim L2
ENSG00000162607 USP1 647314 sc-eQTL 8.44e-01 0.0175 0.0892 0.64 NK_CD56dim L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 3.85e-01 -0.0863 0.0992 0.64 NK_CD56dim L2
ENSG00000079739 PGM1 -509800 sc-eQTL 4.02e-01 0.0834 0.0994 0.628 NK_HLA L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.69e-02 0.196 0.102 0.628 NK_HLA L2
ENSG00000116641 DOCK7 395225 sc-eQTL 4.24e-01 -0.0631 0.0789 0.628 NK_HLA L2
ENSG00000125703 ATG4C 299479 sc-eQTL 2.35e-01 0.109 0.0916 0.628 NK_HLA L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 6.33e-01 0.0461 0.0964 0.628 NK_HLA L2
ENSG00000162607 USP1 647314 sc-eQTL 7.25e-01 0.0356 0.101 0.628 NK_HLA L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 5.17e-01 -0.0595 0.0918 0.628 NK_HLA L2
ENSG00000079739 PGM1 -509800 sc-eQTL 9.80e-01 -0.00203 0.0792 0.64 NK_cytokine L2
ENSG00000088035 ALG6 -283964 sc-eQTL 9.79e-01 0.00239 0.0895 0.64 NK_cytokine L2
ENSG00000116641 DOCK7 395225 sc-eQTL 6.17e-01 -0.0415 0.0828 0.64 NK_cytokine L2
ENSG00000125703 ATG4C 299479 sc-eQTL 2.36e-01 0.1 0.0845 0.64 NK_cytokine L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.72e-03 0.253 0.0861 0.64 NK_cytokine L2
ENSG00000162607 USP1 647314 sc-eQTL 3.14e-01 -0.0931 0.0921 0.64 NK_cytokine L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 6.34e-01 0.0446 0.0935 0.64 NK_cytokine L2
ENSG00000079739 PGM1 -509800 sc-eQTL 3.76e-01 0.101 0.114 0.641 PB L2
ENSG00000088035 ALG6 -283964 sc-eQTL 3.83e-01 0.105 0.119 0.641 PB L2
ENSG00000116641 DOCK7 395225 sc-eQTL 8.39e-01 0.026 0.128 0.641 PB L2
ENSG00000125703 ATG4C 299479 sc-eQTL 5.26e-01 0.0709 0.111 0.641 PB L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 4.96e-01 0.0759 0.111 0.641 PB L2
ENSG00000162607 USP1 647314 sc-eQTL 6.48e-01 0.0507 0.111 0.641 PB L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 9.64e-01 0.00558 0.122 0.641 PB L2
ENSG00000079739 PGM1 -509800 sc-eQTL 2.57e-01 0.0985 0.0867 0.643 Pro_T L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.39e-01 -0.0545 0.0884 0.643 Pro_T L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.81e-02 -0.194 0.0878 0.643 Pro_T L2
ENSG00000125703 ATG4C 299479 sc-eQTL 1.69e-02 -0.185 0.0767 0.643 Pro_T L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 7.37e-01 -0.0262 0.0779 0.643 Pro_T L2
ENSG00000162607 USP1 647314 sc-eQTL 9.05e-01 -0.00639 0.0536 0.643 Pro_T L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.92e-01 0.118 0.0902 0.643 Pro_T L2
ENSG00000079739 PGM1 -509800 sc-eQTL 1.23e-02 0.225 0.0891 0.641 Treg L2
ENSG00000088035 ALG6 -283964 sc-eQTL 4.73e-01 -0.0694 0.0966 0.641 Treg L2
ENSG00000116641 DOCK7 395225 sc-eQTL 3.48e-01 -0.0833 0.0886 0.641 Treg L2
ENSG00000125703 ATG4C 299479 sc-eQTL 7.10e-01 0.0337 0.0907 0.641 Treg L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.63e-01 0.0863 0.0947 0.641 Treg L2
ENSG00000162607 USP1 647314 sc-eQTL 1.34e-01 0.137 0.0913 0.641 Treg L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.95e-01 -0.0237 0.0908 0.641 Treg L2
ENSG00000079739 PGM1 -509800 sc-eQTL 5.99e-01 0.0465 0.0884 0.634 cDC L2
ENSG00000088035 ALG6 -283964 sc-eQTL 7.17e-01 -0.0325 0.0897 0.634 cDC L2
ENSG00000116641 DOCK7 395225 sc-eQTL 5.27e-02 0.17 0.0872 0.634 cDC L2
ENSG00000125703 ATG4C 299479 sc-eQTL 9.58e-01 -0.00403 0.0765 0.634 cDC L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.73e-01 0.132 0.0964 0.634 cDC L2
ENSG00000162607 USP1 647314 sc-eQTL 6.93e-01 0.0341 0.0863 0.634 cDC L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.07e-01 0.125 0.0773 0.634 cDC L2
ENSG00000079739 PGM1 -509800 sc-eQTL 9.59e-01 -0.00435 0.0854 0.641 cMono_IL1B L2
ENSG00000088035 ALG6 -283964 sc-eQTL 5.01e-01 -0.0575 0.0854 0.641 cMono_IL1B L2
ENSG00000116641 DOCK7 395225 sc-eQTL 7.83e-01 0.0249 0.0901 0.641 cMono_IL1B L2
ENSG00000125703 ATG4C 299479 sc-eQTL 7.37e-02 0.113 0.0629 0.641 cMono_IL1B L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.35e-01 0.134 0.0893 0.641 cMono_IL1B L2
ENSG00000162607 USP1 647314 sc-eQTL 1.14e-01 -0.125 0.0787 0.641 cMono_IL1B L2
ENSG00000240563 L1TD1 888762 sc-eQTL 3.55e-01 -0.0736 0.0794 0.641 cMono_IL1B L2
ENSG00000079739 PGM1 -509800 sc-eQTL 9.51e-01 0.00572 0.0936 0.641 cMono_S100A L2
ENSG00000088035 ALG6 -283964 sc-eQTL 7.87e-01 0.0256 0.0949 0.641 cMono_S100A L2
ENSG00000116641 DOCK7 395225 sc-eQTL 8.83e-01 -0.013 0.088 0.641 cMono_S100A L2
ENSG00000125703 ATG4C 299479 sc-eQTL 2.16e-01 -0.0942 0.0759 0.641 cMono_S100A L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.01e-02 0.199 0.0848 0.641 cMono_S100A L2
ENSG00000162607 USP1 647314 sc-eQTL 4.92e-01 0.0608 0.0884 0.641 cMono_S100A L2
ENSG00000240563 L1TD1 888762 sc-eQTL 6.73e-02 -0.134 0.073 0.641 cMono_S100A L2
ENSG00000079739 PGM1 -509800 sc-eQTL 3.09e-01 0.107 0.105 0.636 gdT L2
ENSG00000088035 ALG6 -283964 sc-eQTL 4.52e-01 0.0847 0.112 0.636 gdT L2
ENSG00000116641 DOCK7 395225 sc-eQTL 1.55e-01 -0.157 0.11 0.636 gdT L2
ENSG00000125703 ATG4C 299479 sc-eQTL 3.69e-01 -0.0948 0.105 0.636 gdT L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.74e-01 0.152 0.111 0.636 gdT L2
ENSG00000162607 USP1 647314 sc-eQTL 1.24e-01 -0.163 0.105 0.636 gdT L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 2.47e-01 -0.128 0.11 0.636 gdT L2
ENSG00000079739 PGM1 -509800 sc-eQTL 5.21e-01 -0.0609 0.0948 0.64 intMono L2
ENSG00000088035 ALG6 -283964 sc-eQTL 7.55e-01 -0.0276 0.0884 0.64 intMono L2
ENSG00000116641 DOCK7 395225 sc-eQTL 2.20e-01 0.111 0.0899 0.64 intMono L2
ENSG00000125703 ATG4C 299479 sc-eQTL 7.31e-01 -0.0297 0.0862 0.64 intMono L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.23e-01 0.116 0.0946 0.64 intMono L2
ENSG00000162607 USP1 647314 sc-eQTL 1.98e-01 0.124 0.0962 0.64 intMono L2
ENSG00000240563 L1TD1 888762 sc-eQTL 2.21e-01 -0.0868 0.0708 0.64 intMono L2
ENSG00000079739 PGM1 -509800 sc-eQTL 2.27e-01 0.105 0.0864 0.633 ncMono L2
ENSG00000088035 ALG6 -283964 sc-eQTL 9.94e-01 0.000727 0.0953 0.633 ncMono L2
ENSG00000116641 DOCK7 395225 sc-eQTL 9.65e-01 -0.00412 0.0938 0.633 ncMono L2
ENSG00000125703 ATG4C 299479 sc-eQTL 7.55e-01 -0.0274 0.0876 0.633 ncMono L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 9.41e-01 0.00674 0.0917 0.633 ncMono L2
ENSG00000162607 USP1 647314 sc-eQTL 1.27e-01 -0.143 0.0931 0.633 ncMono L2
ENSG00000240563 L1TD1 888762 sc-eQTL 5.56e-01 -0.0392 0.0664 0.633 ncMono L2
ENSG00000079739 PGM1 -509800 sc-eQTL 5.92e-02 0.2 0.105 0.655 pDC L2
ENSG00000088035 ALG6 -283964 sc-eQTL 8.60e-01 0.0183 0.103 0.655 pDC L2
ENSG00000116641 DOCK7 395225 sc-eQTL 6.17e-01 0.053 0.106 0.655 pDC L2
ENSG00000125703 ATG4C 299479 sc-eQTL 4.07e-01 -0.0787 0.0946 0.655 pDC L2
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.59e-01 0.12 0.106 0.655 pDC L2
ENSG00000162607 USP1 647314 sc-eQTL 8.53e-01 -0.0201 0.108 0.655 pDC L2
ENSG00000203965 EFCAB7 -439761 sc-eQTL 1.63e-01 0.131 0.0936 0.655 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -509800 sc-eQTL 4.31e-02 0.179 0.0879 0.641 B_Memory LOneK1K
ENSG00000088035 ALG6 -283964 sc-eQTL 9.87e-01 0.00165 0.0981 0.641 B_Memory LOneK1K
ENSG00000116641 DOCK7 395225 sc-eQTL 8.46e-01 -0.0165 0.0852 0.641 B_Memory LOneK1K
ENSG00000125703 ATG4C 299479 sc-eQTL 3.65e-01 0.0624 0.0687 0.641 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -510110 sc-eQTL 1.23e-01 0.139 0.09 0.641 B_Memory LOneK1K
ENSG00000162607 USP1 647314 sc-eQTL 3.01e-01 0.0908 0.0876 0.641 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -439761 sc-eQTL 4.20e-01 0.0761 0.0941 0.641 B_Memory LOneK1K
ENSG00000079739 PGM1 -509800 sc-eQTL 5.34e-01 0.0576 0.0925 0.641 B_Naive LOneK1K
ENSG00000088035 ALG6 -283964 sc-eQTL 2.85e-02 -0.208 0.0942 0.641 B_Naive LOneK1K
ENSG00000116641 DOCK7 395225 sc-eQTL 1.26e-02 0.221 0.0877 0.641 B_Naive LOneK1K
ENSG00000125703 ATG4C 299479 sc-eQTL 8.22e-01 0.0153 0.0679 0.641 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -510110 sc-eQTL 2.52e-01 0.11 0.0957 0.641 B_Naive LOneK1K
ENSG00000162607 USP1 647314 sc-eQTL 5.66e-02 0.157 0.0818 0.641 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -439761 sc-eQTL 2.20e-01 0.118 0.0962 0.641 B_Naive LOneK1K
ENSG00000079739 PGM1 -509800 sc-eQTL 8.73e-01 -0.0139 0.087 0.641 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -283964 sc-eQTL 4.68e-01 -0.0611 0.0841 0.641 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 395225 sc-eQTL 5.96e-01 0.045 0.0847 0.641 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 299479 sc-eQTL 6.87e-01 0.0236 0.0586 0.641 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.49e-03 0.251 0.085 0.641 CD14_Mono LOneK1K
ENSG00000162607 USP1 647314 sc-eQTL 4.95e-01 -0.0505 0.074 0.641 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 888762 sc-eQTL 2.13e-01 -0.0999 0.08 0.641 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -509800 sc-eQTL 5.37e-01 0.0511 0.0826 0.642 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -283964 sc-eQTL 7.19e-01 -0.0339 0.0939 0.642 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 395225 sc-eQTL 8.77e-01 0.0144 0.0929 0.642 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 299479 sc-eQTL 4.18e-01 -0.0642 0.0791 0.642 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.42e-01 0.0875 0.0918 0.642 CD16_Mono LOneK1K
ENSG00000162607 USP1 647314 sc-eQTL 4.87e-01 0.0601 0.0863 0.642 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 888762 sc-eQTL 2.15e-01 -0.0731 0.0587 0.642 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -509800 sc-eQTL 6.81e-01 -0.0289 0.0702 0.64 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -283964 sc-eQTL 8.57e-01 -0.0152 0.0843 0.64 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 395225 sc-eQTL 6.68e-01 0.0324 0.0755 0.64 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 299479 sc-eQTL 3.19e-01 0.075 0.0752 0.64 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -510110 sc-eQTL 3.36e-01 0.086 0.0891 0.64 NK_CD56dim LOneK1K
ENSG00000162607 USP1 647314 sc-eQTL 7.56e-01 -0.0253 0.0811 0.64 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -439761 sc-eQTL 7.47e-01 -0.0319 0.0986 0.64 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000162607 USP1 647314 eQTL 0.0298 -0.028 0.0129 0.0 0.0 0.396

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000142856 \N -510110 1.26e-06 9.3e-07 2.88e-07 7.96e-07 1.56e-07 4.02e-07 1.09e-06 2.84e-07 1.14e-06 2.81e-07 1.25e-06 5.45e-07 1.73e-06 2.72e-07 4.39e-07 4.84e-07 7.7e-07 5.54e-07 4.54e-07 5.19e-07 3.95e-07 8.66e-07 6.93e-07 4.66e-07 1.64e-06 2.4e-07 5.24e-07 7.22e-07 8.4e-07 1e-06 5.37e-07 2.6e-07 2.33e-07 3.82e-07 3.6e-07 4.59e-07 5.32e-07 1.5e-07 3.52e-07 2.46e-07 2.44e-07 1.41e-06 6.94e-08 4.23e-08 1.7e-07 7.57e-08 1.77e-07 8.31e-08 9.13e-08