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Genes within 1Mb (chr1:63065465:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -527946 sc-eQTL 5.34e-01 -0.0523 0.0838 0.331 B L1
ENSG00000088035 ALG6 -302110 sc-eQTL 2.54e-01 0.0991 0.0867 0.331 B L1
ENSG00000116641 DOCK7 377079 sc-eQTL 2.30e-01 -0.104 0.0866 0.331 B L1
ENSG00000125703 ATG4C 281333 sc-eQTL 2.45e-01 -0.0702 0.0602 0.331 B L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 4.88e-01 -0.0668 0.0961 0.331 B L1
ENSG00000162607 USP1 629168 sc-eQTL 8.42e-02 -0.144 0.0829 0.331 B L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 1.69e-01 -0.135 0.0981 0.331 B L1
ENSG00000079739 PGM1 -527946 sc-eQTL 6.19e-01 -0.0356 0.0716 0.331 CD4T L1
ENSG00000088035 ALG6 -302110 sc-eQTL 4.71e-01 -0.0571 0.0789 0.331 CD4T L1
ENSG00000116641 DOCK7 377079 sc-eQTL 1.92e-01 -0.104 0.0797 0.331 CD4T L1
ENSG00000125703 ATG4C 281333 sc-eQTL 3.21e-01 -0.0642 0.0645 0.331 CD4T L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 7.42e-02 -0.163 0.091 0.331 CD4T L1
ENSG00000162607 USP1 629168 sc-eQTL 1.05e-01 -0.101 0.0623 0.331 CD4T L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 8.82e-02 -0.14 0.0818 0.331 CD4T L1
ENSG00000079739 PGM1 -527946 sc-eQTL 2.17e-03 -0.242 0.0781 0.331 CD8T L1
ENSG00000088035 ALG6 -302110 sc-eQTL 3.82e-01 0.077 0.0879 0.331 CD8T L1
ENSG00000116641 DOCK7 377079 sc-eQTL 4.51e-01 -0.0672 0.089 0.331 CD8T L1
ENSG00000125703 ATG4C 281333 sc-eQTL 6.73e-01 -0.0358 0.0847 0.331 CD8T L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 7.19e-02 -0.17 0.094 0.331 CD8T L1
ENSG00000162607 USP1 629168 sc-eQTL 4.55e-01 -0.0551 0.0737 0.331 CD8T L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.44e-02 -0.181 0.0936 0.331 CD8T L1
ENSG00000079739 PGM1 -527946 sc-eQTL 7.48e-01 -0.0291 0.0903 0.333 DC L1
ENSG00000088035 ALG6 -302110 sc-eQTL 9.58e-01 -0.00492 0.0932 0.333 DC L1
ENSG00000116641 DOCK7 377079 sc-eQTL 6.77e-01 0.0398 0.0954 0.333 DC L1
ENSG00000125703 ATG4C 281333 sc-eQTL 4.39e-01 0.0578 0.0746 0.333 DC L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.04e-01 -0.17 0.104 0.333 DC L1
ENSG00000162607 USP1 629168 sc-eQTL 4.20e-01 0.0736 0.091 0.333 DC L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.37e-01 0.0873 0.0907 0.333 DC L1
ENSG00000079739 PGM1 -527946 sc-eQTL 1.65e-02 -0.207 0.0855 0.331 Mono L1
ENSG00000088035 ALG6 -302110 sc-eQTL 4.65e-01 -0.0661 0.0903 0.331 Mono L1
ENSG00000116641 DOCK7 377079 sc-eQTL 6.71e-01 -0.0372 0.0874 0.331 Mono L1
ENSG00000125703 ATG4C 281333 sc-eQTL 9.57e-01 0.00318 0.0591 0.331 Mono L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.35e-01 -0.0901 0.0932 0.331 Mono L1
ENSG00000162607 USP1 629168 sc-eQTL 3.95e-01 0.0653 0.0766 0.331 Mono L1
ENSG00000240563 L1TD1 870616 sc-eQTL 7.26e-01 0.0251 0.0716 0.331 Mono L1
ENSG00000079739 PGM1 -527946 sc-eQTL 7.79e-01 -0.0207 0.0737 0.33 NK L1
ENSG00000088035 ALG6 -302110 sc-eQTL 2.10e-01 0.108 0.0861 0.33 NK L1
ENSG00000116641 DOCK7 377079 sc-eQTL 3.60e-02 -0.149 0.0704 0.33 NK L1
ENSG00000125703 ATG4C 281333 sc-eQTL 5.78e-01 -0.0426 0.0764 0.33 NK L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.17e-02 -0.217 0.0938 0.33 NK L1
ENSG00000162607 USP1 629168 sc-eQTL 9.50e-01 -0.00531 0.0849 0.33 NK L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 6.72e-02 0.188 0.102 0.33 NK L1
ENSG00000079739 PGM1 -527946 sc-eQTL 3.21e-01 -0.0839 0.0843 0.331 Other_T L1
ENSG00000088035 ALG6 -302110 sc-eQTL 7.88e-01 -0.0228 0.0849 0.331 Other_T L1
ENSG00000116641 DOCK7 377079 sc-eQTL 6.72e-01 0.0368 0.0867 0.331 Other_T L1
ENSG00000125703 ATG4C 281333 sc-eQTL 4.87e-01 -0.0522 0.075 0.331 Other_T L1
ENSG00000142856 ITGB3BP -528256 sc-eQTL 9.74e-01 -0.00214 0.0666 0.331 Other_T L1
ENSG00000162607 USP1 629168 sc-eQTL 2.50e-01 0.0664 0.0575 0.331 Other_T L1
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.79e-01 0.0904 0.103 0.331 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -527946 sc-eQTL 6.00e-02 -0.206 0.109 0.327 B_Activated L2
ENSG00000088035 ALG6 -302110 sc-eQTL 8.93e-01 -0.0142 0.105 0.327 B_Activated L2
ENSG00000116641 DOCK7 377079 sc-eQTL 1.86e-01 -0.13 0.0977 0.327 B_Activated L2
ENSG00000125703 ATG4C 281333 sc-eQTL 4.07e-01 0.0856 0.103 0.327 B_Activated L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 8.09e-01 -0.0244 0.101 0.327 B_Activated L2
ENSG00000162607 USP1 629168 sc-eQTL 6.37e-01 -0.0517 0.109 0.327 B_Activated L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 4.24e-01 -0.0764 0.0954 0.327 B_Activated L2
ENSG00000079739 PGM1 -527946 sc-eQTL 8.96e-01 -0.0131 0.0994 0.33 B_Intermediate L2
ENSG00000088035 ALG6 -302110 sc-eQTL 7.84e-02 0.177 0.1 0.33 B_Intermediate L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.75e-01 -0.0856 0.0963 0.33 B_Intermediate L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.38e-01 -0.0963 0.0814 0.33 B_Intermediate L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 5.03e-01 -0.0651 0.0971 0.33 B_Intermediate L2
ENSG00000162607 USP1 629168 sc-eQTL 7.29e-01 0.0337 0.0971 0.33 B_Intermediate L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 1.23e-01 0.148 0.0958 0.33 B_Intermediate L2
ENSG00000079739 PGM1 -527946 sc-eQTL 3.60e-01 0.0897 0.0977 0.334 B_Memory L2
ENSG00000088035 ALG6 -302110 sc-eQTL 8.15e-01 0.0233 0.0995 0.334 B_Memory L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.94e-01 0.0796 0.0932 0.334 B_Memory L2
ENSG00000125703 ATG4C 281333 sc-eQTL 3.32e-01 0.0862 0.0885 0.334 B_Memory L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.34e-01 0.121 0.101 0.334 B_Memory L2
ENSG00000162607 USP1 629168 sc-eQTL 6.98e-02 -0.185 0.102 0.334 B_Memory L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 1.69e-01 0.139 0.1 0.334 B_Memory L2
ENSG00000079739 PGM1 -527946 sc-eQTL 6.54e-01 -0.0451 0.101 0.331 B_Naive1 L2
ENSG00000088035 ALG6 -302110 sc-eQTL 7.76e-01 -0.0288 0.101 0.331 B_Naive1 L2
ENSG00000116641 DOCK7 377079 sc-eQTL 5.88e-01 -0.0525 0.0967 0.331 B_Naive1 L2
ENSG00000125703 ATG4C 281333 sc-eQTL 8.57e-01 0.0135 0.0745 0.331 B_Naive1 L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.24e-01 -0.152 0.0984 0.331 B_Naive1 L2
ENSG00000162607 USP1 629168 sc-eQTL 1.34e-01 -0.13 0.0865 0.331 B_Naive1 L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 9.40e-02 -0.176 0.105 0.331 B_Naive1 L2
ENSG00000079739 PGM1 -527946 sc-eQTL 8.04e-01 -0.0246 0.0989 0.333 B_Naive2 L2
ENSG00000088035 ALG6 -302110 sc-eQTL 7.95e-01 0.0269 0.103 0.333 B_Naive2 L2
ENSG00000116641 DOCK7 377079 sc-eQTL 8.93e-01 -0.0133 0.0992 0.333 B_Naive2 L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.10e-01 -0.12 0.0951 0.333 B_Naive2 L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.96e-02 0.212 0.103 0.333 B_Naive2 L2
ENSG00000162607 USP1 629168 sc-eQTL 3.18e-01 -0.0984 0.0983 0.333 B_Naive2 L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 2.07e-01 -0.13 0.103 0.333 B_Naive2 L2
ENSG00000079739 PGM1 -527946 sc-eQTL 2.24e-01 0.121 0.0996 0.334 CD4_CTL L2
ENSG00000088035 ALG6 -302110 sc-eQTL 5.19e-01 -0.0682 0.106 0.334 CD4_CTL L2
ENSG00000116641 DOCK7 377079 sc-eQTL 5.71e-01 -0.0524 0.0923 0.334 CD4_CTL L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.10e-01 -0.12 0.0952 0.334 CD4_CTL L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 6.82e-01 0.042 0.102 0.334 CD4_CTL L2
ENSG00000162607 USP1 629168 sc-eQTL 4.86e-01 -0.0679 0.0972 0.334 CD4_CTL L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 6.18e-01 0.0485 0.0971 0.334 CD4_CTL L2
ENSG00000079739 PGM1 -527946 sc-eQTL 2.94e-01 -0.0845 0.0803 0.331 CD4_Naive L2
ENSG00000088035 ALG6 -302110 sc-eQTL 7.57e-01 -0.0271 0.0875 0.331 CD4_Naive L2
ENSG00000116641 DOCK7 377079 sc-eQTL 2.20e-01 -0.105 0.0857 0.331 CD4_Naive L2
ENSG00000125703 ATG4C 281333 sc-eQTL 9.52e-01 -0.00457 0.076 0.331 CD4_Naive L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.26e-01 -0.112 0.0926 0.331 CD4_Naive L2
ENSG00000162607 USP1 629168 sc-eQTL 1.99e-01 -0.091 0.0707 0.331 CD4_Naive L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.96e-02 -0.173 0.0915 0.331 CD4_Naive L2
ENSG00000079739 PGM1 -527946 sc-eQTL 3.12e-01 -0.0844 0.0833 0.331 CD4_TCM L2
ENSG00000088035 ALG6 -302110 sc-eQTL 6.02e-01 -0.0506 0.0969 0.331 CD4_TCM L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.17e-01 -0.086 0.0857 0.331 CD4_TCM L2
ENSG00000125703 ATG4C 281333 sc-eQTL 5.08e-01 -0.0553 0.0836 0.331 CD4_TCM L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.63e-01 -0.137 0.0981 0.331 CD4_TCM L2
ENSG00000162607 USP1 629168 sc-eQTL 5.64e-01 -0.0467 0.0808 0.331 CD4_TCM L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 2.46e-01 -0.111 0.0951 0.331 CD4_TCM L2
ENSG00000079739 PGM1 -527946 sc-eQTL 6.25e-02 0.186 0.0992 0.331 CD4_TEM L2
ENSG00000088035 ALG6 -302110 sc-eQTL 1.44e-01 -0.147 0.1 0.331 CD4_TEM L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.64e-01 -0.0891 0.0978 0.331 CD4_TEM L2
ENSG00000125703 ATG4C 281333 sc-eQTL 6.82e-01 -0.039 0.0951 0.331 CD4_TEM L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.52e-02 -0.219 0.0971 0.331 CD4_TEM L2
ENSG00000162607 USP1 629168 sc-eQTL 3.30e-02 -0.198 0.0921 0.331 CD4_TEM L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 8.88e-01 -0.0143 0.102 0.331 CD4_TEM L2
ENSG00000079739 PGM1 -527946 sc-eQTL 4.13e-02 -0.187 0.091 0.331 CD8_CTL L2
ENSG00000088035 ALG6 -302110 sc-eQTL 6.78e-01 -0.0407 0.0977 0.331 CD8_CTL L2
ENSG00000116641 DOCK7 377079 sc-eQTL 5.11e-01 -0.061 0.0927 0.331 CD8_CTL L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.16e-01 -0.122 0.0984 0.331 CD8_CTL L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.45e-01 -0.0969 0.102 0.331 CD8_CTL L2
ENSG00000162607 USP1 629168 sc-eQTL 6.55e-02 -0.169 0.0912 0.331 CD8_CTL L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.43e-01 -0.0997 0.105 0.331 CD8_CTL L2
ENSG00000079739 PGM1 -527946 sc-eQTL 4.01e-03 -0.259 0.089 0.331 CD8_Naive L2
ENSG00000088035 ALG6 -302110 sc-eQTL 9.74e-01 -0.00302 0.094 0.331 CD8_Naive L2
ENSG00000116641 DOCK7 377079 sc-eQTL 7.37e-02 -0.173 0.0964 0.331 CD8_Naive L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.38e-02 -0.21 0.0922 0.331 CD8_Naive L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.49e-01 -0.136 0.094 0.331 CD8_Naive L2
ENSG00000162607 USP1 629168 sc-eQTL 4.66e-01 -0.0582 0.0798 0.331 CD8_Naive L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.38e-02 -0.171 0.0883 0.331 CD8_Naive L2
ENSG00000079739 PGM1 -527946 sc-eQTL 7.98e-01 0.0261 0.102 0.333 CD8_TCM L2
ENSG00000088035 ALG6 -302110 sc-eQTL 8.53e-01 0.0192 0.103 0.333 CD8_TCM L2
ENSG00000116641 DOCK7 377079 sc-eQTL 9.06e-01 0.0119 0.101 0.333 CD8_TCM L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.13e-01 0.128 0.103 0.333 CD8_TCM L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 7.27e-01 0.0351 0.1 0.333 CD8_TCM L2
ENSG00000162607 USP1 629168 sc-eQTL 3.51e-01 -0.09 0.0962 0.333 CD8_TCM L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.25e-01 -0.065 0.102 0.333 CD8_TCM L2
ENSG00000079739 PGM1 -527946 sc-eQTL 2.55e-01 -0.115 0.101 0.333 CD8_TEM L2
ENSG00000088035 ALG6 -302110 sc-eQTL 4.40e-01 0.0784 0.101 0.333 CD8_TEM L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.38e-01 0.0944 0.0982 0.333 CD8_TEM L2
ENSG00000125703 ATG4C 281333 sc-eQTL 1.98e-01 0.122 0.0943 0.333 CD8_TEM L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.76e-01 -0.138 0.102 0.333 CD8_TEM L2
ENSG00000162607 USP1 629168 sc-eQTL 7.23e-01 0.0346 0.0977 0.333 CD8_TEM L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 2.14e-01 -0.123 0.099 0.333 CD8_TEM L2
ENSG00000079739 PGM1 -527946 sc-eQTL 8.03e-01 -0.0242 0.0968 0.331 MAIT L2
ENSG00000088035 ALG6 -302110 sc-eQTL 5.31e-02 -0.185 0.095 0.331 MAIT L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.60e-01 -0.0841 0.0917 0.331 MAIT L2
ENSG00000125703 ATG4C 281333 sc-eQTL 6.74e-02 -0.177 0.0961 0.331 MAIT L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 9.86e-01 0.00176 0.097 0.331 MAIT L2
ENSG00000162607 USP1 629168 sc-eQTL 8.96e-01 -0.0126 0.0963 0.331 MAIT L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.76e-01 0.0884 0.0997 0.331 MAIT L2
ENSG00000079739 PGM1 -527946 sc-eQTL 5.10e-01 -0.0647 0.0981 0.331 NK_CD56bright L2
ENSG00000088035 ALG6 -302110 sc-eQTL 4.45e-01 0.0768 0.1 0.331 NK_CD56bright L2
ENSG00000116641 DOCK7 377079 sc-eQTL 8.96e-01 -0.0114 0.0872 0.331 NK_CD56bright L2
ENSG00000125703 ATG4C 281333 sc-eQTL 6.37e-01 -0.046 0.0973 0.331 NK_CD56bright L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 7.54e-01 0.0318 0.101 0.331 NK_CD56bright L2
ENSG00000162607 USP1 629168 sc-eQTL 6.54e-01 0.0469 0.105 0.331 NK_CD56bright L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.68e-02 0.208 0.099 0.331 NK_CD56bright L2
ENSG00000079739 PGM1 -527946 sc-eQTL 8.51e-01 -0.0143 0.0762 0.332 NK_CD56dim L2
ENSG00000088035 ALG6 -302110 sc-eQTL 5.92e-01 0.0518 0.0966 0.332 NK_CD56dim L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.34e-01 -0.0813 0.0839 0.332 NK_CD56dim L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.21e-01 0.104 0.0851 0.332 NK_CD56dim L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.01e-02 -0.225 0.0959 0.332 NK_CD56dim L2
ENSG00000162607 USP1 629168 sc-eQTL 9.11e-01 0.0105 0.0942 0.332 NK_CD56dim L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 4.60e-01 0.0776 0.105 0.332 NK_CD56dim L2
ENSG00000079739 PGM1 -527946 sc-eQTL 4.52e-01 -0.08 0.106 0.338 NK_HLA L2
ENSG00000088035 ALG6 -302110 sc-eQTL 9.51e-01 -0.00678 0.11 0.338 NK_HLA L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.34e-01 0.0815 0.0841 0.338 NK_HLA L2
ENSG00000125703 ATG4C 281333 sc-eQTL 8.40e-01 0.0198 0.098 0.338 NK_HLA L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 9.48e-01 -0.00667 0.103 0.338 NK_HLA L2
ENSG00000162607 USP1 629168 sc-eQTL 6.53e-01 0.0484 0.108 0.338 NK_HLA L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.80e-02 0.185 0.0971 0.338 NK_HLA L2
ENSG00000079739 PGM1 -527946 sc-eQTL 6.91e-01 0.0338 0.0849 0.332 NK_cytokine L2
ENSG00000088035 ALG6 -302110 sc-eQTL 2.28e-01 0.116 0.0957 0.332 NK_cytokine L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.77e-02 -0.184 0.088 0.332 NK_cytokine L2
ENSG00000125703 ATG4C 281333 sc-eQTL 8.03e-02 -0.159 0.0903 0.332 NK_cytokine L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 5.75e-02 -0.178 0.0934 0.332 NK_cytokine L2
ENSG00000162607 USP1 629168 sc-eQTL 5.32e-01 -0.062 0.099 0.332 NK_cytokine L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.01e-01 0.104 0.1 0.332 NK_cytokine L2
ENSG00000079739 PGM1 -527946 sc-eQTL 5.04e-02 -0.231 0.117 0.337 PB L2
ENSG00000088035 ALG6 -302110 sc-eQTL 2.06e-01 0.158 0.124 0.337 PB L2
ENSG00000116641 DOCK7 377079 sc-eQTL 7.78e-01 -0.0378 0.134 0.337 PB L2
ENSG00000125703 ATG4C 281333 sc-eQTL 6.41e-01 -0.0543 0.116 0.337 PB L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 7.13e-01 -0.0428 0.116 0.337 PB L2
ENSG00000162607 USP1 629168 sc-eQTL 5.76e-01 0.0648 0.116 0.337 PB L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 1.93e-01 -0.166 0.127 0.337 PB L2
ENSG00000079739 PGM1 -527946 sc-eQTL 6.76e-01 -0.038 0.0909 0.333 Pro_T L2
ENSG00000088035 ALG6 -302110 sc-eQTL 3.72e-01 0.0826 0.0923 0.333 Pro_T L2
ENSG00000116641 DOCK7 377079 sc-eQTL 3.09e-01 0.0944 0.0926 0.333 Pro_T L2
ENSG00000125703 ATG4C 281333 sc-eQTL 7.44e-01 -0.0266 0.0812 0.333 Pro_T L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.86e-01 -0.0706 0.0814 0.333 Pro_T L2
ENSG00000162607 USP1 629168 sc-eQTL 1.99e-01 -0.0719 0.0558 0.333 Pro_T L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 6.40e-01 -0.0444 0.0946 0.333 Pro_T L2
ENSG00000079739 PGM1 -527946 sc-eQTL 2.39e-01 -0.113 0.0955 0.331 Treg L2
ENSG00000088035 ALG6 -302110 sc-eQTL 8.88e-01 -0.0145 0.102 0.331 Treg L2
ENSG00000116641 DOCK7 377079 sc-eQTL 4.22e-01 0.0755 0.0939 0.331 Treg L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.87e-01 -0.102 0.0959 0.331 Treg L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 8.61e-01 -0.0176 0.101 0.331 Treg L2
ENSG00000162607 USP1 629168 sc-eQTL 2.11e-01 -0.122 0.0969 0.331 Treg L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 8.79e-02 0.164 0.0956 0.331 Treg L2
ENSG00000079739 PGM1 -527946 sc-eQTL 5.18e-01 -0.0617 0.0953 0.329 cDC L2
ENSG00000088035 ALG6 -302110 sc-eQTL 7.56e-02 0.171 0.0959 0.329 cDC L2
ENSG00000116641 DOCK7 377079 sc-eQTL 5.13e-01 -0.0621 0.0948 0.329 cDC L2
ENSG00000125703 ATG4C 281333 sc-eQTL 1.00e+00 4.78e-05 0.0824 0.329 cDC L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.08e-01 -0.106 0.104 0.329 cDC L2
ENSG00000162607 USP1 629168 sc-eQTL 7.05e-01 0.0352 0.093 0.329 cDC L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.11e-01 -0.085 0.0837 0.329 cDC L2
ENSG00000079739 PGM1 -527946 sc-eQTL 4.85e-02 -0.178 0.0895 0.331 cMono_IL1B L2
ENSG00000088035 ALG6 -302110 sc-eQTL 6.32e-01 -0.0434 0.0904 0.331 cMono_IL1B L2
ENSG00000116641 DOCK7 377079 sc-eQTL 6.01e-01 -0.0499 0.0953 0.331 cMono_IL1B L2
ENSG00000125703 ATG4C 281333 sc-eQTL 5.19e-01 -0.0433 0.067 0.331 cMono_IL1B L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.51e-01 -0.109 0.0947 0.331 cMono_IL1B L2
ENSG00000162607 USP1 629168 sc-eQTL 3.63e-01 -0.0763 0.0837 0.331 cMono_IL1B L2
ENSG00000240563 L1TD1 870616 sc-eQTL 3.79e-01 0.0741 0.084 0.331 cMono_IL1B L2
ENSG00000079739 PGM1 -527946 sc-eQTL 4.70e-02 -0.2 0.0999 0.331 cMono_S100A L2
ENSG00000088035 ALG6 -302110 sc-eQTL 2.16e-01 -0.126 0.102 0.331 cMono_S100A L2
ENSG00000116641 DOCK7 377079 sc-eQTL 5.99e-01 -0.0499 0.0947 0.331 cMono_S100A L2
ENSG00000125703 ATG4C 281333 sc-eQTL 5.50e-01 -0.0491 0.082 0.331 cMono_S100A L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 8.89e-01 -0.013 0.0926 0.331 cMono_S100A L2
ENSG00000162607 USP1 629168 sc-eQTL 9.86e-01 -0.00165 0.0953 0.331 cMono_S100A L2
ENSG00000240563 L1TD1 870616 sc-eQTL 4.44e-01 0.0608 0.0792 0.331 cMono_S100A L2
ENSG00000079739 PGM1 -527946 sc-eQTL 1.71e-01 -0.161 0.117 0.339 gdT L2
ENSG00000088035 ALG6 -302110 sc-eQTL 4.80e-01 0.0889 0.125 0.339 gdT L2
ENSG00000116641 DOCK7 377079 sc-eQTL 7.13e-01 0.0454 0.123 0.339 gdT L2
ENSG00000125703 ATG4C 281333 sc-eQTL 9.63e-01 -0.00542 0.118 0.339 gdT L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 6.35e-01 -0.0595 0.125 0.339 gdT L2
ENSG00000162607 USP1 629168 sc-eQTL 6.79e-01 -0.049 0.118 0.339 gdT L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 9.68e-02 0.204 0.122 0.339 gdT L2
ENSG00000079739 PGM1 -527946 sc-eQTL 3.12e-01 -0.102 0.101 0.331 intMono L2
ENSG00000088035 ALG6 -302110 sc-eQTL 1.11e-01 0.15 0.0934 0.331 intMono L2
ENSG00000116641 DOCK7 377079 sc-eQTL 8.58e-01 0.0171 0.096 0.331 intMono L2
ENSG00000125703 ATG4C 281333 sc-eQTL 2.26e-02 0.208 0.0905 0.331 intMono L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 6.32e-01 0.0484 0.101 0.331 intMono L2
ENSG00000162607 USP1 629168 sc-eQTL 2.45e-02 0.23 0.101 0.331 intMono L2
ENSG00000240563 L1TD1 870616 sc-eQTL 6.74e-01 0.0318 0.0755 0.331 intMono L2
ENSG00000079739 PGM1 -527946 sc-eQTL 6.41e-01 0.0439 0.0939 0.33 ncMono L2
ENSG00000088035 ALG6 -302110 sc-eQTL 9.27e-01 -0.00946 0.103 0.33 ncMono L2
ENSG00000116641 DOCK7 377079 sc-eQTL 8.36e-01 -0.0211 0.102 0.33 ncMono L2
ENSG00000125703 ATG4C 281333 sc-eQTL 6.49e-02 0.175 0.0941 0.33 ncMono L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.71e-01 -0.109 0.099 0.33 ncMono L2
ENSG00000162607 USP1 629168 sc-eQTL 7.07e-02 0.183 0.101 0.33 ncMono L2
ENSG00000240563 L1TD1 870616 sc-eQTL 7.70e-01 -0.0211 0.0719 0.33 ncMono L2
ENSG00000079739 PGM1 -527946 sc-eQTL 5.17e-01 -0.0711 0.109 0.342 pDC L2
ENSG00000088035 ALG6 -302110 sc-eQTL 2.65e-01 -0.119 0.106 0.342 pDC L2
ENSG00000116641 DOCK7 377079 sc-eQTL 1.80e-01 0.146 0.108 0.342 pDC L2
ENSG00000125703 ATG4C 281333 sc-eQTL 9.72e-01 0.00347 0.0978 0.342 pDC L2
ENSG00000142856 ITGB3BP -528256 sc-eQTL 2.32e-01 -0.131 0.109 0.342 pDC L2
ENSG00000162607 USP1 629168 sc-eQTL 9.97e-01 -0.000365 0.112 0.342 pDC L2
ENSG00000203965 EFCAB7 -457907 sc-eQTL 9.63e-01 -0.00454 0.0971 0.342 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -527946 sc-eQTL 8.72e-01 0.0149 0.0919 0.331 B_Memory LOneK1K
ENSG00000088035 ALG6 -302110 sc-eQTL 1.56e-01 0.144 0.101 0.331 B_Memory LOneK1K
ENSG00000116641 DOCK7 377079 sc-eQTL 4.92e-01 -0.0606 0.0881 0.331 B_Memory LOneK1K
ENSG00000125703 ATG4C 281333 sc-eQTL 9.43e-01 0.00513 0.0713 0.331 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -528256 sc-eQTL 8.28e-01 0.0204 0.0937 0.331 B_Memory LOneK1K
ENSG00000162607 USP1 629168 sc-eQTL 2.30e-01 -0.109 0.0907 0.331 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -457907 sc-eQTL 3.80e-01 0.0857 0.0975 0.331 B_Memory LOneK1K
ENSG00000079739 PGM1 -527946 sc-eQTL 5.69e-01 -0.0559 0.0979 0.331 B_Naive LOneK1K
ENSG00000088035 ALG6 -302110 sc-eQTL 8.93e-01 -0.0136 0.101 0.331 B_Naive LOneK1K
ENSG00000116641 DOCK7 377079 sc-eQTL 2.77e-01 -0.102 0.0939 0.331 B_Naive LOneK1K
ENSG00000125703 ATG4C 281333 sc-eQTL 4.50e-01 -0.0543 0.0718 0.331 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -528256 sc-eQTL 6.28e-01 -0.0493 0.102 0.331 B_Naive LOneK1K
ENSG00000162607 USP1 629168 sc-eQTL 6.98e-02 -0.158 0.0866 0.331 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -457907 sc-eQTL 5.92e-02 -0.192 0.101 0.331 B_Naive LOneK1K
ENSG00000079739 PGM1 -527946 sc-eQTL 1.15e-02 -0.233 0.0915 0.331 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -302110 sc-eQTL 4.61e-01 -0.0664 0.0898 0.331 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 377079 sc-eQTL 3.96e-01 -0.0769 0.0904 0.331 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 281333 sc-eQTL 3.43e-01 -0.0594 0.0625 0.331 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.19e-01 -0.0924 0.0924 0.331 CD14_Mono LOneK1K
ENSG00000162607 USP1 629168 sc-eQTL 7.48e-01 -0.0255 0.0791 0.331 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 870616 sc-eQTL 6.87e-01 0.0346 0.0858 0.331 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -527946 sc-eQTL 9.34e-01 0.00734 0.0888 0.33 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -302110 sc-eQTL 5.06e-01 0.0672 0.101 0.33 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 377079 sc-eQTL 4.70e-01 0.0722 0.0996 0.33 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 281333 sc-eQTL 7.89e-02 0.149 0.0844 0.33 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -528256 sc-eQTL 3.78e-01 -0.0871 0.0986 0.33 CD16_Mono LOneK1K
ENSG00000162607 USP1 629168 sc-eQTL 5.99e-04 0.314 0.0902 0.33 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 870616 sc-eQTL 9.50e-01 0.004 0.0633 0.33 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -527946 sc-eQTL 9.37e-01 -0.00599 0.0752 0.332 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -302110 sc-eQTL 3.08e-01 0.0921 0.09 0.332 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 377079 sc-eQTL 8.71e-02 -0.138 0.0803 0.332 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 281333 sc-eQTL 6.19e-01 -0.0401 0.0807 0.332 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -528256 sc-eQTL 1.77e-02 -0.226 0.0944 0.332 NK_CD56dim LOneK1K
ENSG00000162607 USP1 629168 sc-eQTL 8.88e-01 0.0122 0.0868 0.332 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -457907 sc-eQTL 1.40e-01 0.156 0.105 0.332 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 870616 eQTL 0.00816 -0.109 0.041 0.0 0.0 0.285

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000125703 \N 281333 1.28e-06 1.03e-06 2.53e-07 1.14e-06 3.76e-07 6.02e-07 1.52e-06 4.54e-07 1.66e-06 6.2e-07 1.84e-06 8.75e-07 2.43e-06 2.92e-07 4.98e-07 9.72e-07 9.26e-07 9.52e-07 6.56e-07 4.74e-07 7.6e-07 1.93e-06 1.03e-06 5.89e-07 2.21e-06 7.75e-07 9.89e-07 8.91e-07 1.63e-06 1.23e-06 7.41e-07 2.61e-07 2.65e-07 5.72e-07 5.32e-07 5.35e-07 7.46e-07 2.94e-07 4.58e-07 3.32e-07 2.59e-07 1.55e-06 1.28e-07 4.23e-08 2.8e-07 1.72e-07 2.68e-07 1.16e-07 2.41e-07