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Genes within 1Mb (chr1:63048939:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -544472 sc-eQTL 1.51e-01 -0.113 0.0784 0.4 B L1
ENSG00000088035 ALG6 -318636 sc-eQTL 2.73e-01 0.0894 0.0814 0.4 B L1
ENSG00000116641 DOCK7 360553 sc-eQTL 3.95e-01 -0.0694 0.0815 0.4 B L1
ENSG00000125703 ATG4C 264807 sc-eQTL 8.69e-01 -0.00938 0.0567 0.4 B L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.15e-01 -0.033 0.0902 0.4 B L1
ENSG00000162607 USP1 612642 sc-eQTL 1.59e-02 -0.188 0.0773 0.4 B L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.19e-01 -0.0922 0.0923 0.4 B L1
ENSG00000079739 PGM1 -544472 sc-eQTL 1.22e-01 -0.104 0.0671 0.4 CD4T L1
ENSG00000088035 ALG6 -318636 sc-eQTL 5.25e-01 -0.0474 0.0744 0.4 CD4T L1
ENSG00000116641 DOCK7 360553 sc-eQTL 5.02e-01 -0.0506 0.0753 0.4 CD4T L1
ENSG00000125703 ATG4C 264807 sc-eQTL 7.28e-01 -0.0212 0.0609 0.4 CD4T L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 4.92e-02 -0.169 0.0857 0.4 CD4T L1
ENSG00000162607 USP1 612642 sc-eQTL 8.19e-02 -0.103 0.0587 0.4 CD4T L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 4.18e-02 -0.157 0.0768 0.4 CD4T L1
ENSG00000079739 PGM1 -544472 sc-eQTL 4.89e-03 -0.209 0.0734 0.4 CD8T L1
ENSG00000088035 ALG6 -318636 sc-eQTL 1.80e-01 0.11 0.0821 0.4 CD8T L1
ENSG00000116641 DOCK7 360553 sc-eQTL 6.78e-01 -0.0347 0.0835 0.4 CD8T L1
ENSG00000125703 ATG4C 264807 sc-eQTL 6.89e-01 -0.0318 0.0793 0.4 CD8T L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.41e-01 -0.13 0.0882 0.4 CD8T L1
ENSG00000162607 USP1 612642 sc-eQTL 4.02e-01 -0.058 0.069 0.4 CD8T L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.36e-01 -0.132 0.0879 0.4 CD8T L1
ENSG00000079739 PGM1 -544472 sc-eQTL 5.66e-01 -0.0491 0.0854 0.403 DC L1
ENSG00000088035 ALG6 -318636 sc-eQTL 8.89e-01 -0.0123 0.0882 0.403 DC L1
ENSG00000116641 DOCK7 360553 sc-eQTL 6.31e-01 -0.0434 0.0904 0.403 DC L1
ENSG00000125703 ATG4C 264807 sc-eQTL 5.33e-01 0.0441 0.0707 0.403 DC L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 8.46e-01 -0.0192 0.0989 0.403 DC L1
ENSG00000162607 USP1 612642 sc-eQTL 8.55e-01 -0.0158 0.0863 0.403 DC L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.49e-01 0.0991 0.0858 0.403 DC L1
ENSG00000079739 PGM1 -544472 sc-eQTL 6.12e-02 -0.153 0.0814 0.4 Mono L1
ENSG00000088035 ALG6 -318636 sc-eQTL 4.72e-01 -0.0616 0.0855 0.4 Mono L1
ENSG00000116641 DOCK7 360553 sc-eQTL 7.22e-01 -0.0295 0.0828 0.4 Mono L1
ENSG00000125703 ATG4C 264807 sc-eQTL 9.59e-01 -0.00291 0.056 0.4 Mono L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.94e-01 -0.115 0.0881 0.4 Mono L1
ENSG00000162607 USP1 612642 sc-eQTL 2.62e-01 0.0815 0.0724 0.4 Mono L1
ENSG00000240563 L1TD1 854090 sc-eQTL 5.95e-01 0.0361 0.0678 0.4 Mono L1
ENSG00000079739 PGM1 -544472 sc-eQTL 8.27e-01 0.0152 0.0693 0.399 NK L1
ENSG00000088035 ALG6 -318636 sc-eQTL 1.09e-02 0.206 0.08 0.399 NK L1
ENSG00000116641 DOCK7 360553 sc-eQTL 2.85e-01 -0.0716 0.0668 0.399 NK L1
ENSG00000125703 ATG4C 264807 sc-eQTL 2.45e-01 -0.0835 0.0717 0.399 NK L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.70e-02 -0.212 0.0882 0.399 NK L1
ENSG00000162607 USP1 612642 sc-eQTL 5.19e-01 -0.0515 0.0798 0.399 NK L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.26e-01 0.148 0.0965 0.399 NK L1
ENSG00000079739 PGM1 -544472 sc-eQTL 6.23e-01 -0.0393 0.0798 0.4 Other_T L1
ENSG00000088035 ALG6 -318636 sc-eQTL 1.49e-01 -0.116 0.0798 0.4 Other_T L1
ENSG00000116641 DOCK7 360553 sc-eQTL 5.98e-01 0.0432 0.0819 0.4 Other_T L1
ENSG00000125703 ATG4C 264807 sc-eQTL 6.34e-02 -0.131 0.0703 0.4 Other_T L1
ENSG00000142856 ITGB3BP -544782 sc-eQTL 8.87e-01 0.00897 0.0629 0.4 Other_T L1
ENSG00000162607 USP1 612642 sc-eQTL 2.97e-01 0.0569 0.0544 0.4 Other_T L1
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.37e-01 0.115 0.0967 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -544472 sc-eQTL 7.44e-02 -0.187 0.104 0.403 B_Activated L2
ENSG00000088035 ALG6 -318636 sc-eQTL 6.39e-01 -0.0473 0.101 0.403 B_Activated L2
ENSG00000116641 DOCK7 360553 sc-eQTL 3.63e-01 -0.0853 0.0935 0.403 B_Activated L2
ENSG00000125703 ATG4C 264807 sc-eQTL 1.92e-01 0.129 0.0981 0.403 B_Activated L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.69e-01 0.0284 0.0963 0.403 B_Activated L2
ENSG00000162607 USP1 612642 sc-eQTL 3.82e-01 -0.0913 0.104 0.403 B_Activated L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.77e-01 -0.0806 0.0909 0.403 B_Activated L2
ENSG00000079739 PGM1 -544472 sc-eQTL 2.15e-01 -0.117 0.0943 0.401 B_Intermediate L2
ENSG00000088035 ALG6 -318636 sc-eQTL 2.13e-01 0.12 0.0958 0.401 B_Intermediate L2
ENSG00000116641 DOCK7 360553 sc-eQTL 6.95e-01 -0.036 0.0918 0.401 B_Intermediate L2
ENSG00000125703 ATG4C 264807 sc-eQTL 4.13e-01 -0.0637 0.0776 0.401 B_Intermediate L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 4.94e-01 -0.0634 0.0925 0.401 B_Intermediate L2
ENSG00000162607 USP1 612642 sc-eQTL 6.51e-01 -0.0419 0.0924 0.401 B_Intermediate L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.34e-02 0.207 0.0906 0.401 B_Intermediate L2
ENSG00000079739 PGM1 -544472 sc-eQTL 9.91e-01 0.00106 0.0928 0.403 B_Memory L2
ENSG00000088035 ALG6 -318636 sc-eQTL 4.59e-01 0.07 0.0942 0.403 B_Memory L2
ENSG00000116641 DOCK7 360553 sc-eQTL 2.55e-01 0.101 0.0882 0.403 B_Memory L2
ENSG00000125703 ATG4C 264807 sc-eQTL 1.68e-01 0.116 0.0837 0.403 B_Memory L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 2.00e-01 0.123 0.0959 0.403 B_Memory L2
ENSG00000162607 USP1 612642 sc-eQTL 9.05e-02 -0.164 0.0964 0.403 B_Memory L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.32e-01 0.0927 0.0953 0.403 B_Memory L2
ENSG00000079739 PGM1 -544472 sc-eQTL 7.87e-01 -0.0255 0.0942 0.4 B_Naive1 L2
ENSG00000088035 ALG6 -318636 sc-eQTL 9.21e-01 -0.00943 0.0945 0.4 B_Naive1 L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.82e-01 0.00206 0.0906 0.4 B_Naive1 L2
ENSG00000125703 ATG4C 264807 sc-eQTL 5.64e-01 0.0403 0.0697 0.4 B_Naive1 L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 4.04e-01 -0.0774 0.0924 0.4 B_Naive1 L2
ENSG00000162607 USP1 612642 sc-eQTL 7.80e-02 -0.143 0.0808 0.4 B_Naive1 L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.90e-02 -0.203 0.0978 0.4 B_Naive1 L2
ENSG00000079739 PGM1 -544472 sc-eQTL 2.47e-01 -0.109 0.0934 0.401 B_Naive2 L2
ENSG00000088035 ALG6 -318636 sc-eQTL 3.75e-01 0.0867 0.0975 0.401 B_Naive2 L2
ENSG00000116641 DOCK7 360553 sc-eQTL 5.56e-01 -0.0554 0.0939 0.401 B_Naive2 L2
ENSG00000125703 ATG4C 264807 sc-eQTL 6.27e-01 -0.044 0.0904 0.401 B_Naive2 L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 6.76e-02 0.179 0.0973 0.401 B_Naive2 L2
ENSG00000162607 USP1 612642 sc-eQTL 4.60e-01 -0.069 0.0932 0.401 B_Naive2 L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 6.93e-01 -0.0386 0.0975 0.401 B_Naive2 L2
ENSG00000079739 PGM1 -544472 sc-eQTL 3.72e-01 0.0848 0.0948 0.4 CD4_CTL L2
ENSG00000088035 ALG6 -318636 sc-eQTL 7.68e-01 -0.0296 0.1 0.4 CD4_CTL L2
ENSG00000116641 DOCK7 360553 sc-eQTL 7.07e-01 -0.0331 0.0877 0.4 CD4_CTL L2
ENSG00000125703 ATG4C 264807 sc-eQTL 3.74e-01 -0.0807 0.0906 0.4 CD4_CTL L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 9.98e-01 -0.000208 0.0971 0.4 CD4_CTL L2
ENSG00000162607 USP1 612642 sc-eQTL 7.23e-01 -0.0327 0.0924 0.4 CD4_CTL L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 9.91e-01 -0.00109 0.0923 0.4 CD4_CTL L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.32e-01 -0.114 0.0753 0.4 CD4_Naive L2
ENSG00000088035 ALG6 -318636 sc-eQTL 4.59e-01 -0.061 0.0821 0.4 CD4_Naive L2
ENSG00000116641 DOCK7 360553 sc-eQTL 8.52e-01 -0.0151 0.0808 0.4 CD4_Naive L2
ENSG00000125703 ATG4C 264807 sc-eQTL 3.53e-01 0.0664 0.0713 0.4 CD4_Naive L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.44e-01 -0.128 0.0869 0.4 CD4_Naive L2
ENSG00000162607 USP1 612642 sc-eQTL 6.52e-02 -0.123 0.0662 0.4 CD4_Naive L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 4.37e-02 -0.174 0.0858 0.4 CD4_Naive L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.94e-02 -0.183 0.0778 0.4 CD4_TCM L2
ENSG00000088035 ALG6 -318636 sc-eQTL 6.57e-01 -0.0407 0.0915 0.4 CD4_TCM L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.09e-01 0.00926 0.0811 0.4 CD4_TCM L2
ENSG00000125703 ATG4C 264807 sc-eQTL 3.71e-01 -0.0706 0.0788 0.4 CD4_TCM L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 2.63e-01 -0.104 0.0928 0.4 CD4_TCM L2
ENSG00000162607 USP1 612642 sc-eQTL 5.28e-01 -0.0481 0.0762 0.4 CD4_TCM L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.38e-01 -0.133 0.0896 0.4 CD4_TCM L2
ENSG00000079739 PGM1 -544472 sc-eQTL 4.06e-01 0.0773 0.093 0.4 CD4_TEM L2
ENSG00000088035 ALG6 -318636 sc-eQTL 6.35e-02 -0.173 0.0928 0.4 CD4_TEM L2
ENSG00000116641 DOCK7 360553 sc-eQTL 1.33e-01 -0.137 0.0908 0.4 CD4_TEM L2
ENSG00000125703 ATG4C 264807 sc-eQTL 5.82e-01 -0.0488 0.0886 0.4 CD4_TEM L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.77e-02 -0.216 0.0903 0.4 CD4_TEM L2
ENSG00000162607 USP1 612642 sc-eQTL 4.09e-02 -0.176 0.0858 0.4 CD4_TEM L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 8.54e-01 0.0174 0.0948 0.4 CD4_TEM L2
ENSG00000079739 PGM1 -544472 sc-eQTL 6.59e-02 -0.157 0.0851 0.4 CD8_CTL L2
ENSG00000088035 ALG6 -318636 sc-eQTL 8.43e-01 -0.0181 0.0912 0.4 CD8_CTL L2
ENSG00000116641 DOCK7 360553 sc-eQTL 5.92e-01 -0.0464 0.0865 0.4 CD8_CTL L2
ENSG00000125703 ATG4C 264807 sc-eQTL 2.16e-01 -0.114 0.0918 0.4 CD8_CTL L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 3.59e-01 -0.0879 0.0956 0.4 CD8_CTL L2
ENSG00000162607 USP1 612642 sc-eQTL 2.48e-01 -0.099 0.0855 0.4 CD8_CTL L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 5.14e-01 -0.064 0.098 0.4 CD8_CTL L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.12e-03 -0.278 0.0841 0.4 CD8_Naive L2
ENSG00000088035 ALG6 -318636 sc-eQTL 9.36e-01 0.00721 0.0893 0.4 CD8_Naive L2
ENSG00000116641 DOCK7 360553 sc-eQTL 1.28e-01 -0.14 0.0918 0.4 CD8_Naive L2
ENSG00000125703 ATG4C 264807 sc-eQTL 9.83e-02 -0.146 0.088 0.4 CD8_Naive L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.55e-02 -0.159 0.0891 0.4 CD8_Naive L2
ENSG00000162607 USP1 612642 sc-eQTL 4.36e-01 -0.0592 0.0758 0.4 CD8_Naive L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.57e-02 -0.177 0.0837 0.4 CD8_Naive L2
ENSG00000079739 PGM1 -544472 sc-eQTL 3.68e-01 0.0896 0.0992 0.391 CD8_TCM L2
ENSG00000088035 ALG6 -318636 sc-eQTL 4.92e-01 0.0693 0.101 0.391 CD8_TCM L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.40e-01 0.00738 0.0983 0.391 CD8_TCM L2
ENSG00000125703 ATG4C 264807 sc-eQTL 1.61e-01 0.141 0.1 0.391 CD8_TCM L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.12e-01 0.155 0.097 0.391 CD8_TCM L2
ENSG00000162607 USP1 612642 sc-eQTL 1.07e-01 -0.151 0.0933 0.391 CD8_TCM L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 9.12e-01 -0.0111 0.0995 0.391 CD8_TCM L2
ENSG00000079739 PGM1 -544472 sc-eQTL 3.45e-01 -0.0908 0.0959 0.404 CD8_TEM L2
ENSG00000088035 ALG6 -318636 sc-eQTL 2.84e-01 0.103 0.0962 0.404 CD8_TEM L2
ENSG00000116641 DOCK7 360553 sc-eQTL 4.91e-01 0.0645 0.0934 0.404 CD8_TEM L2
ENSG00000125703 ATG4C 264807 sc-eQTL 8.61e-01 -0.0158 0.0899 0.404 CD8_TEM L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 3.60e-01 -0.089 0.0971 0.404 CD8_TEM L2
ENSG00000162607 USP1 612642 sc-eQTL 4.80e-01 0.0656 0.0927 0.404 CD8_TEM L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.07e-01 -0.119 0.094 0.404 CD8_TEM L2
ENSG00000079739 PGM1 -544472 sc-eQTL 5.46e-01 0.0559 0.0923 0.398 MAIT L2
ENSG00000088035 ALG6 -318636 sc-eQTL 1.20e-02 -0.228 0.0901 0.398 MAIT L2
ENSG00000116641 DOCK7 360553 sc-eQTL 7.89e-01 -0.0235 0.0876 0.398 MAIT L2
ENSG00000125703 ATG4C 264807 sc-eQTL 1.28e-02 -0.229 0.091 0.398 MAIT L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 6.75e-01 -0.0389 0.0925 0.398 MAIT L2
ENSG00000162607 USP1 612642 sc-eQTL 5.54e-01 -0.0544 0.0918 0.398 MAIT L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.30e-01 0.144 0.0948 0.398 MAIT L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.99e-01 -0.121 0.0938 0.4 NK_CD56bright L2
ENSG00000088035 ALG6 -318636 sc-eQTL 1.81e-01 0.129 0.0962 0.4 NK_CD56bright L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.49e-01 -0.00532 0.0837 0.4 NK_CD56bright L2
ENSG00000125703 ATG4C 264807 sc-eQTL 2.82e-01 -0.101 0.0932 0.4 NK_CD56bright L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 6.22e-01 0.048 0.0973 0.4 NK_CD56bright L2
ENSG00000162607 USP1 612642 sc-eQTL 4.21e-01 0.0808 0.1 0.4 NK_CD56bright L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.77e-02 0.199 0.095 0.4 NK_CD56bright L2
ENSG00000079739 PGM1 -544472 sc-eQTL 7.30e-01 0.0249 0.072 0.401 NK_CD56dim L2
ENSG00000088035 ALG6 -318636 sc-eQTL 2.38e-01 0.108 0.0911 0.401 NK_CD56dim L2
ENSG00000116641 DOCK7 360553 sc-eQTL 8.60e-01 0.014 0.0795 0.401 NK_CD56dim L2
ENSG00000125703 ATG4C 264807 sc-eQTL 2.82e-01 0.087 0.0806 0.401 NK_CD56dim L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.02e-01 -0.15 0.0913 0.401 NK_CD56dim L2
ENSG00000162607 USP1 612642 sc-eQTL 3.48e-01 -0.0837 0.089 0.401 NK_CD56dim L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 3.04e-01 0.102 0.0991 0.401 NK_CD56dim L2
ENSG00000079739 PGM1 -544472 sc-eQTL 8.92e-01 -0.0136 0.1 0.411 NK_HLA L2
ENSG00000088035 ALG6 -318636 sc-eQTL 9.13e-01 -0.0114 0.104 0.411 NK_HLA L2
ENSG00000116641 DOCK7 360553 sc-eQTL 6.62e-01 0.0348 0.0794 0.411 NK_HLA L2
ENSG00000125703 ATG4C 264807 sc-eQTL 5.47e-01 -0.0557 0.0923 0.411 NK_HLA L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 3.37e-01 -0.0932 0.0968 0.411 NK_HLA L2
ENSG00000162607 USP1 612642 sc-eQTL 8.82e-01 0.0151 0.102 0.411 NK_HLA L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.22e-01 0.143 0.0919 0.411 NK_HLA L2
ENSG00000079739 PGM1 -544472 sc-eQTL 7.25e-01 0.0283 0.0804 0.401 NK_cytokine L2
ENSG00000088035 ALG6 -318636 sc-eQTL 4.51e-02 0.182 0.0901 0.401 NK_cytokine L2
ENSG00000116641 DOCK7 360553 sc-eQTL 1.62e-01 -0.118 0.0839 0.401 NK_cytokine L2
ENSG00000125703 ATG4C 264807 sc-eQTL 6.17e-02 -0.161 0.0855 0.401 NK_cytokine L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 9.86e-03 -0.229 0.0878 0.401 NK_cytokine L2
ENSG00000162607 USP1 612642 sc-eQTL 7.09e-01 -0.0351 0.0938 0.401 NK_cytokine L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 6.56e-01 0.0424 0.0951 0.401 NK_cytokine L2
ENSG00000079739 PGM1 -544472 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -318636 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 360553 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 264807 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 612642 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -544472 sc-eQTL 2.37e-01 -0.102 0.0861 0.398 Pro_T L2
ENSG00000088035 ALG6 -318636 sc-eQTL 9.12e-01 0.00973 0.0879 0.398 Pro_T L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.71e-01 0.00321 0.0882 0.398 Pro_T L2
ENSG00000125703 ATG4C 264807 sc-eQTL 6.76e-01 -0.0324 0.0772 0.398 Pro_T L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 8.01e-01 0.0195 0.0774 0.398 Pro_T L2
ENSG00000162607 USP1 612642 sc-eQTL 4.04e-01 -0.0444 0.0532 0.398 Pro_T L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.21e-01 -0.139 0.0895 0.398 Pro_T L2
ENSG00000079739 PGM1 -544472 sc-eQTL 8.47e-02 -0.157 0.0907 0.4 Treg L2
ENSG00000088035 ALG6 -318636 sc-eQTL 5.12e-01 0.0641 0.0975 0.4 Treg L2
ENSG00000116641 DOCK7 360553 sc-eQTL 5.42e-01 -0.0546 0.0896 0.4 Treg L2
ENSG00000125703 ATG4C 264807 sc-eQTL 6.00e-01 -0.0481 0.0915 0.4 Treg L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 3.34e-01 -0.0927 0.0956 0.4 Treg L2
ENSG00000162607 USP1 612642 sc-eQTL 2.17e-01 -0.114 0.0924 0.4 Treg L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.91e-01 0.0968 0.0914 0.4 Treg L2
ENSG00000079739 PGM1 -544472 sc-eQTL 5.73e-01 -0.0519 0.0921 0.402 cDC L2
ENSG00000088035 ALG6 -318636 sc-eQTL 1.20e-01 0.145 0.0928 0.402 cDC L2
ENSG00000116641 DOCK7 360553 sc-eQTL 1.83e-01 -0.122 0.0913 0.402 cDC L2
ENSG00000125703 ATG4C 264807 sc-eQTL 6.41e-01 -0.0372 0.0796 0.402 cDC L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.05e-01 -0.0383 0.101 0.402 cDC L2
ENSG00000162607 USP1 612642 sc-eQTL 7.58e-01 -0.0277 0.0898 0.402 cDC L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.26e-01 -0.124 0.0806 0.402 cDC L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.36e-01 -0.127 0.0849 0.4 cMono_IL1B L2
ENSG00000088035 ALG6 -318636 sc-eQTL 6.87e-01 -0.0345 0.0854 0.4 cMono_IL1B L2
ENSG00000116641 DOCK7 360553 sc-eQTL 9.34e-01 -0.00742 0.0901 0.4 cMono_IL1B L2
ENSG00000125703 ATG4C 264807 sc-eQTL 4.39e-01 -0.049 0.0632 0.4 cMono_IL1B L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.24e-01 -0.138 0.0892 0.4 cMono_IL1B L2
ENSG00000162607 USP1 612642 sc-eQTL 6.97e-01 -0.0309 0.0791 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 854090 sc-eQTL 3.44e-01 0.0752 0.0793 0.4 cMono_IL1B L2
ENSG00000079739 PGM1 -544472 sc-eQTL 1.21e-01 -0.148 0.0954 0.4 cMono_S100A L2
ENSG00000088035 ALG6 -318636 sc-eQTL 2.37e-01 -0.115 0.0969 0.4 cMono_S100A L2
ENSG00000116641 DOCK7 360553 sc-eQTL 4.07e-01 -0.0748 0.09 0.4 cMono_S100A L2
ENSG00000125703 ATG4C 264807 sc-eQTL 8.60e-01 0.0138 0.078 0.4 cMono_S100A L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 8.19e-01 -0.0202 0.088 0.4 cMono_S100A L2
ENSG00000162607 USP1 612642 sc-eQTL 5.17e-01 0.0587 0.0905 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 854090 sc-eQTL 8.71e-01 -0.0122 0.0754 0.4 cMono_S100A L2
ENSG00000079739 PGM1 -544472 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -318636 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 360553 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 264807 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 612642 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -544472 sc-eQTL 2.01e-01 -0.123 0.0961 0.398 intMono L2
ENSG00000088035 ALG6 -318636 sc-eQTL 4.37e-01 0.0698 0.0897 0.398 intMono L2
ENSG00000116641 DOCK7 360553 sc-eQTL 7.06e-01 0.0346 0.0917 0.398 intMono L2
ENSG00000125703 ATG4C 264807 sc-eQTL 4.27e-02 0.177 0.0867 0.398 intMono L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 7.99e-01 0.0247 0.0965 0.398 intMono L2
ENSG00000162607 USP1 612642 sc-eQTL 2.21e-01 0.12 0.0978 0.398 intMono L2
ENSG00000240563 L1TD1 854090 sc-eQTL 5.50e-01 0.0432 0.0721 0.398 intMono L2
ENSG00000079739 PGM1 -544472 sc-eQTL 8.89e-01 0.0122 0.0879 0.398 ncMono L2
ENSG00000088035 ALG6 -318636 sc-eQTL 9.00e-01 0.0121 0.0965 0.398 ncMono L2
ENSG00000116641 DOCK7 360553 sc-eQTL 4.55e-01 -0.0711 0.0949 0.398 ncMono L2
ENSG00000125703 ATG4C 264807 sc-eQTL 3.61e-01 0.0811 0.0886 0.398 ncMono L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 3.61e-01 -0.0848 0.0926 0.398 ncMono L2
ENSG00000162607 USP1 612642 sc-eQTL 1.03e-01 0.154 0.0942 0.398 ncMono L2
ENSG00000240563 L1TD1 854090 sc-eQTL 5.68e-01 0.0384 0.0672 0.398 ncMono L2
ENSG00000079739 PGM1 -544472 sc-eQTL 3.64e-01 -0.0945 0.104 0.415 pDC L2
ENSG00000088035 ALG6 -318636 sc-eQTL 2.33e-01 -0.121 0.101 0.415 pDC L2
ENSG00000116641 DOCK7 360553 sc-eQTL 4.86e-01 0.0723 0.103 0.415 pDC L2
ENSG00000125703 ATG4C 264807 sc-eQTL 7.48e-01 0.0299 0.0929 0.415 pDC L2
ENSG00000142856 ITGB3BP -544782 sc-eQTL 5.85e-01 -0.057 0.104 0.415 pDC L2
ENSG00000162607 USP1 612642 sc-eQTL 8.19e-01 -0.0244 0.106 0.415 pDC L2
ENSG00000203965 EFCAB7 -474433 sc-eQTL 4.88e-01 0.0641 0.0921 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -544472 sc-eQTL 2.56e-01 -0.0992 0.087 0.4 B_Memory LOneK1K
ENSG00000088035 ALG6 -318636 sc-eQTL 1.24e-01 0.148 0.096 0.4 B_Memory LOneK1K
ENSG00000116641 DOCK7 360553 sc-eQTL 8.77e-01 -0.013 0.0838 0.4 B_Memory LOneK1K
ENSG00000125703 ATG4C 264807 sc-eQTL 7.73e-01 0.0195 0.0677 0.4 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -544782 sc-eQTL 6.13e-01 0.045 0.0889 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 612642 sc-eQTL 9.58e-02 -0.144 0.0858 0.4 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.57e-01 0.105 0.0925 0.4 B_Memory LOneK1K
ENSG00000079739 PGM1 -544472 sc-eQTL 4.05e-01 -0.0763 0.0916 0.4 B_Naive LOneK1K
ENSG00000088035 ALG6 -318636 sc-eQTL 7.68e-01 0.0279 0.0944 0.4 B_Naive LOneK1K
ENSG00000116641 DOCK7 360553 sc-eQTL 4.76e-01 -0.0629 0.0881 0.4 B_Naive LOneK1K
ENSG00000125703 ATG4C 264807 sc-eQTL 7.64e-01 0.0202 0.0673 0.4 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -544782 sc-eQTL 9.60e-01 0.00479 0.0951 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 612642 sc-eQTL 3.51e-02 -0.172 0.0809 0.4 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -474433 sc-eQTL 6.13e-02 -0.178 0.0948 0.4 B_Naive LOneK1K
ENSG00000079739 PGM1 -544472 sc-eQTL 5.94e-02 -0.165 0.0871 0.4 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -318636 sc-eQTL 4.70e-01 -0.0615 0.085 0.4 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 360553 sc-eQTL 5.13e-01 -0.0561 0.0856 0.4 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 264807 sc-eQTL 4.39e-01 -0.0459 0.0591 0.4 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -544782 sc-eQTL 2.10e-01 -0.11 0.0873 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 612642 sc-eQTL 5.90e-01 0.0404 0.0748 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 854090 sc-eQTL 9.94e-01 0.000649 0.0811 0.4 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -544472 sc-eQTL 5.80e-01 -0.0466 0.0841 0.399 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -318636 sc-eQTL 6.51e-01 0.0432 0.0955 0.399 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 360553 sc-eQTL 6.07e-01 0.0487 0.0945 0.399 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 264807 sc-eQTL 4.52e-01 0.0607 0.0805 0.399 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -544782 sc-eQTL 4.66e-01 -0.0683 0.0935 0.399 CD16_Mono LOneK1K
ENSG00000162607 USP1 612642 sc-eQTL 4.02e-02 0.18 0.0871 0.399 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 854090 sc-eQTL 3.16e-01 0.0602 0.0599 0.399 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -544472 sc-eQTL 6.11e-01 0.0359 0.0705 0.401 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -318636 sc-eQTL 3.30e-02 0.18 0.0838 0.401 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 360553 sc-eQTL 6.03e-01 -0.0395 0.0759 0.401 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 264807 sc-eQTL 3.59e-01 -0.0695 0.0756 0.401 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -544782 sc-eQTL 1.42e-02 -0.219 0.0885 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 612642 sc-eQTL 5.22e-01 -0.0522 0.0814 0.401 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -474433 sc-eQTL 2.26e-01 0.12 0.0988 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 854090 eQTL 0.00519 -0.108 0.0387 0.0 0.0 0.344

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina