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Genes within 1Mb (chr1:63043446:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -549965 sc-eQTL 1.51e-01 -0.113 0.0784 0.4 B L1
ENSG00000088035 ALG6 -324129 sc-eQTL 2.73e-01 0.0894 0.0814 0.4 B L1
ENSG00000116641 DOCK7 355060 sc-eQTL 3.95e-01 -0.0694 0.0815 0.4 B L1
ENSG00000125703 ATG4C 259314 sc-eQTL 8.69e-01 -0.00938 0.0567 0.4 B L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.15e-01 -0.033 0.0902 0.4 B L1
ENSG00000162607 USP1 607149 sc-eQTL 1.59e-02 -0.188 0.0773 0.4 B L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.19e-01 -0.0922 0.0923 0.4 B L1
ENSG00000079739 PGM1 -549965 sc-eQTL 1.22e-01 -0.104 0.0671 0.4 CD4T L1
ENSG00000088035 ALG6 -324129 sc-eQTL 5.25e-01 -0.0474 0.0744 0.4 CD4T L1
ENSG00000116641 DOCK7 355060 sc-eQTL 5.02e-01 -0.0506 0.0753 0.4 CD4T L1
ENSG00000125703 ATG4C 259314 sc-eQTL 7.28e-01 -0.0212 0.0609 0.4 CD4T L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 4.92e-02 -0.169 0.0857 0.4 CD4T L1
ENSG00000162607 USP1 607149 sc-eQTL 8.19e-02 -0.103 0.0587 0.4 CD4T L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 4.18e-02 -0.157 0.0768 0.4 CD4T L1
ENSG00000079739 PGM1 -549965 sc-eQTL 4.89e-03 -0.209 0.0734 0.4 CD8T L1
ENSG00000088035 ALG6 -324129 sc-eQTL 1.80e-01 0.11 0.0821 0.4 CD8T L1
ENSG00000116641 DOCK7 355060 sc-eQTL 6.78e-01 -0.0347 0.0835 0.4 CD8T L1
ENSG00000125703 ATG4C 259314 sc-eQTL 6.89e-01 -0.0318 0.0793 0.4 CD8T L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.41e-01 -0.13 0.0882 0.4 CD8T L1
ENSG00000162607 USP1 607149 sc-eQTL 4.02e-01 -0.058 0.069 0.4 CD8T L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.36e-01 -0.132 0.0879 0.4 CD8T L1
ENSG00000079739 PGM1 -549965 sc-eQTL 5.66e-01 -0.0491 0.0854 0.403 DC L1
ENSG00000088035 ALG6 -324129 sc-eQTL 8.89e-01 -0.0123 0.0882 0.403 DC L1
ENSG00000116641 DOCK7 355060 sc-eQTL 6.31e-01 -0.0434 0.0904 0.403 DC L1
ENSG00000125703 ATG4C 259314 sc-eQTL 5.33e-01 0.0441 0.0707 0.403 DC L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 8.46e-01 -0.0192 0.0989 0.403 DC L1
ENSG00000162607 USP1 607149 sc-eQTL 8.55e-01 -0.0158 0.0863 0.403 DC L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.49e-01 0.0991 0.0858 0.403 DC L1
ENSG00000079739 PGM1 -549965 sc-eQTL 6.12e-02 -0.153 0.0814 0.4 Mono L1
ENSG00000088035 ALG6 -324129 sc-eQTL 4.72e-01 -0.0616 0.0855 0.4 Mono L1
ENSG00000116641 DOCK7 355060 sc-eQTL 7.22e-01 -0.0295 0.0828 0.4 Mono L1
ENSG00000125703 ATG4C 259314 sc-eQTL 9.59e-01 -0.00291 0.056 0.4 Mono L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.94e-01 -0.115 0.0881 0.4 Mono L1
ENSG00000162607 USP1 607149 sc-eQTL 2.62e-01 0.0815 0.0724 0.4 Mono L1
ENSG00000240563 L1TD1 848597 sc-eQTL 5.95e-01 0.0361 0.0678 0.4 Mono L1
ENSG00000079739 PGM1 -549965 sc-eQTL 8.27e-01 0.0152 0.0693 0.399 NK L1
ENSG00000088035 ALG6 -324129 sc-eQTL 1.09e-02 0.206 0.08 0.399 NK L1
ENSG00000116641 DOCK7 355060 sc-eQTL 2.85e-01 -0.0716 0.0668 0.399 NK L1
ENSG00000125703 ATG4C 259314 sc-eQTL 2.45e-01 -0.0835 0.0717 0.399 NK L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.70e-02 -0.212 0.0882 0.399 NK L1
ENSG00000162607 USP1 607149 sc-eQTL 5.19e-01 -0.0515 0.0798 0.399 NK L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.26e-01 0.148 0.0965 0.399 NK L1
ENSG00000079739 PGM1 -549965 sc-eQTL 6.23e-01 -0.0393 0.0798 0.4 Other_T L1
ENSG00000088035 ALG6 -324129 sc-eQTL 1.49e-01 -0.116 0.0798 0.4 Other_T L1
ENSG00000116641 DOCK7 355060 sc-eQTL 5.98e-01 0.0432 0.0819 0.4 Other_T L1
ENSG00000125703 ATG4C 259314 sc-eQTL 6.34e-02 -0.131 0.0703 0.4 Other_T L1
ENSG00000142856 ITGB3BP -550275 sc-eQTL 8.87e-01 0.00897 0.0629 0.4 Other_T L1
ENSG00000162607 USP1 607149 sc-eQTL 2.97e-01 0.0569 0.0544 0.4 Other_T L1
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.37e-01 0.115 0.0967 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -549965 sc-eQTL 7.44e-02 -0.187 0.104 0.403 B_Activated L2
ENSG00000088035 ALG6 -324129 sc-eQTL 6.39e-01 -0.0473 0.101 0.403 B_Activated L2
ENSG00000116641 DOCK7 355060 sc-eQTL 3.63e-01 -0.0853 0.0935 0.403 B_Activated L2
ENSG00000125703 ATG4C 259314 sc-eQTL 1.92e-01 0.129 0.0981 0.403 B_Activated L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.69e-01 0.0284 0.0963 0.403 B_Activated L2
ENSG00000162607 USP1 607149 sc-eQTL 3.82e-01 -0.0913 0.104 0.403 B_Activated L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.77e-01 -0.0806 0.0909 0.403 B_Activated L2
ENSG00000079739 PGM1 -549965 sc-eQTL 2.15e-01 -0.117 0.0943 0.401 B_Intermediate L2
ENSG00000088035 ALG6 -324129 sc-eQTL 2.13e-01 0.12 0.0958 0.401 B_Intermediate L2
ENSG00000116641 DOCK7 355060 sc-eQTL 6.95e-01 -0.036 0.0918 0.401 B_Intermediate L2
ENSG00000125703 ATG4C 259314 sc-eQTL 4.13e-01 -0.0637 0.0776 0.401 B_Intermediate L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 4.94e-01 -0.0634 0.0925 0.401 B_Intermediate L2
ENSG00000162607 USP1 607149 sc-eQTL 6.51e-01 -0.0419 0.0924 0.401 B_Intermediate L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.34e-02 0.207 0.0906 0.401 B_Intermediate L2
ENSG00000079739 PGM1 -549965 sc-eQTL 9.91e-01 0.00106 0.0928 0.403 B_Memory L2
ENSG00000088035 ALG6 -324129 sc-eQTL 4.59e-01 0.07 0.0942 0.403 B_Memory L2
ENSG00000116641 DOCK7 355060 sc-eQTL 2.55e-01 0.101 0.0882 0.403 B_Memory L2
ENSG00000125703 ATG4C 259314 sc-eQTL 1.68e-01 0.116 0.0837 0.403 B_Memory L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 2.00e-01 0.123 0.0959 0.403 B_Memory L2
ENSG00000162607 USP1 607149 sc-eQTL 9.05e-02 -0.164 0.0964 0.403 B_Memory L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.32e-01 0.0927 0.0953 0.403 B_Memory L2
ENSG00000079739 PGM1 -549965 sc-eQTL 7.87e-01 -0.0255 0.0942 0.4 B_Naive1 L2
ENSG00000088035 ALG6 -324129 sc-eQTL 9.21e-01 -0.00943 0.0945 0.4 B_Naive1 L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.82e-01 0.00206 0.0906 0.4 B_Naive1 L2
ENSG00000125703 ATG4C 259314 sc-eQTL 5.64e-01 0.0403 0.0697 0.4 B_Naive1 L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 4.04e-01 -0.0774 0.0924 0.4 B_Naive1 L2
ENSG00000162607 USP1 607149 sc-eQTL 7.80e-02 -0.143 0.0808 0.4 B_Naive1 L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.90e-02 -0.203 0.0978 0.4 B_Naive1 L2
ENSG00000079739 PGM1 -549965 sc-eQTL 2.47e-01 -0.109 0.0934 0.401 B_Naive2 L2
ENSG00000088035 ALG6 -324129 sc-eQTL 3.75e-01 0.0867 0.0975 0.401 B_Naive2 L2
ENSG00000116641 DOCK7 355060 sc-eQTL 5.56e-01 -0.0554 0.0939 0.401 B_Naive2 L2
ENSG00000125703 ATG4C 259314 sc-eQTL 6.27e-01 -0.044 0.0904 0.401 B_Naive2 L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 6.76e-02 0.179 0.0973 0.401 B_Naive2 L2
ENSG00000162607 USP1 607149 sc-eQTL 4.60e-01 -0.069 0.0932 0.401 B_Naive2 L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 6.93e-01 -0.0386 0.0975 0.401 B_Naive2 L2
ENSG00000079739 PGM1 -549965 sc-eQTL 3.72e-01 0.0848 0.0948 0.4 CD4_CTL L2
ENSG00000088035 ALG6 -324129 sc-eQTL 7.68e-01 -0.0296 0.1 0.4 CD4_CTL L2
ENSG00000116641 DOCK7 355060 sc-eQTL 7.07e-01 -0.0331 0.0877 0.4 CD4_CTL L2
ENSG00000125703 ATG4C 259314 sc-eQTL 3.74e-01 -0.0807 0.0906 0.4 CD4_CTL L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 9.98e-01 -0.000208 0.0971 0.4 CD4_CTL L2
ENSG00000162607 USP1 607149 sc-eQTL 7.23e-01 -0.0327 0.0924 0.4 CD4_CTL L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 9.91e-01 -0.00109 0.0923 0.4 CD4_CTL L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.32e-01 -0.114 0.0753 0.4 CD4_Naive L2
ENSG00000088035 ALG6 -324129 sc-eQTL 4.59e-01 -0.061 0.0821 0.4 CD4_Naive L2
ENSG00000116641 DOCK7 355060 sc-eQTL 8.52e-01 -0.0151 0.0808 0.4 CD4_Naive L2
ENSG00000125703 ATG4C 259314 sc-eQTL 3.53e-01 0.0664 0.0713 0.4 CD4_Naive L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.44e-01 -0.128 0.0869 0.4 CD4_Naive L2
ENSG00000162607 USP1 607149 sc-eQTL 6.52e-02 -0.123 0.0662 0.4 CD4_Naive L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 4.37e-02 -0.174 0.0858 0.4 CD4_Naive L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.94e-02 -0.183 0.0778 0.4 CD4_TCM L2
ENSG00000088035 ALG6 -324129 sc-eQTL 6.57e-01 -0.0407 0.0915 0.4 CD4_TCM L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.09e-01 0.00926 0.0811 0.4 CD4_TCM L2
ENSG00000125703 ATG4C 259314 sc-eQTL 3.71e-01 -0.0706 0.0788 0.4 CD4_TCM L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 2.63e-01 -0.104 0.0928 0.4 CD4_TCM L2
ENSG00000162607 USP1 607149 sc-eQTL 5.28e-01 -0.0481 0.0762 0.4 CD4_TCM L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.38e-01 -0.133 0.0896 0.4 CD4_TCM L2
ENSG00000079739 PGM1 -549965 sc-eQTL 4.06e-01 0.0773 0.093 0.4 CD4_TEM L2
ENSG00000088035 ALG6 -324129 sc-eQTL 6.35e-02 -0.173 0.0928 0.4 CD4_TEM L2
ENSG00000116641 DOCK7 355060 sc-eQTL 1.33e-01 -0.137 0.0908 0.4 CD4_TEM L2
ENSG00000125703 ATG4C 259314 sc-eQTL 5.82e-01 -0.0488 0.0886 0.4 CD4_TEM L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.77e-02 -0.216 0.0903 0.4 CD4_TEM L2
ENSG00000162607 USP1 607149 sc-eQTL 4.09e-02 -0.176 0.0858 0.4 CD4_TEM L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 8.54e-01 0.0174 0.0948 0.4 CD4_TEM L2
ENSG00000079739 PGM1 -549965 sc-eQTL 6.59e-02 -0.157 0.0851 0.4 CD8_CTL L2
ENSG00000088035 ALG6 -324129 sc-eQTL 8.43e-01 -0.0181 0.0912 0.4 CD8_CTL L2
ENSG00000116641 DOCK7 355060 sc-eQTL 5.92e-01 -0.0464 0.0865 0.4 CD8_CTL L2
ENSG00000125703 ATG4C 259314 sc-eQTL 2.16e-01 -0.114 0.0918 0.4 CD8_CTL L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 3.59e-01 -0.0879 0.0956 0.4 CD8_CTL L2
ENSG00000162607 USP1 607149 sc-eQTL 2.48e-01 -0.099 0.0855 0.4 CD8_CTL L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 5.14e-01 -0.064 0.098 0.4 CD8_CTL L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.12e-03 -0.278 0.0841 0.4 CD8_Naive L2
ENSG00000088035 ALG6 -324129 sc-eQTL 9.36e-01 0.00721 0.0893 0.4 CD8_Naive L2
ENSG00000116641 DOCK7 355060 sc-eQTL 1.28e-01 -0.14 0.0918 0.4 CD8_Naive L2
ENSG00000125703 ATG4C 259314 sc-eQTL 9.83e-02 -0.146 0.088 0.4 CD8_Naive L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.55e-02 -0.159 0.0891 0.4 CD8_Naive L2
ENSG00000162607 USP1 607149 sc-eQTL 4.36e-01 -0.0592 0.0758 0.4 CD8_Naive L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.57e-02 -0.177 0.0837 0.4 CD8_Naive L2
ENSG00000079739 PGM1 -549965 sc-eQTL 3.68e-01 0.0896 0.0992 0.391 CD8_TCM L2
ENSG00000088035 ALG6 -324129 sc-eQTL 4.92e-01 0.0693 0.101 0.391 CD8_TCM L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.40e-01 0.00738 0.0983 0.391 CD8_TCM L2
ENSG00000125703 ATG4C 259314 sc-eQTL 1.61e-01 0.141 0.1 0.391 CD8_TCM L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.12e-01 0.155 0.097 0.391 CD8_TCM L2
ENSG00000162607 USP1 607149 sc-eQTL 1.07e-01 -0.151 0.0933 0.391 CD8_TCM L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 9.12e-01 -0.0111 0.0995 0.391 CD8_TCM L2
ENSG00000079739 PGM1 -549965 sc-eQTL 3.45e-01 -0.0908 0.0959 0.404 CD8_TEM L2
ENSG00000088035 ALG6 -324129 sc-eQTL 2.84e-01 0.103 0.0962 0.404 CD8_TEM L2
ENSG00000116641 DOCK7 355060 sc-eQTL 4.91e-01 0.0645 0.0934 0.404 CD8_TEM L2
ENSG00000125703 ATG4C 259314 sc-eQTL 8.61e-01 -0.0158 0.0899 0.404 CD8_TEM L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 3.60e-01 -0.089 0.0971 0.404 CD8_TEM L2
ENSG00000162607 USP1 607149 sc-eQTL 4.80e-01 0.0656 0.0927 0.404 CD8_TEM L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.07e-01 -0.119 0.094 0.404 CD8_TEM L2
ENSG00000079739 PGM1 -549965 sc-eQTL 5.46e-01 0.0559 0.0923 0.398 MAIT L2
ENSG00000088035 ALG6 -324129 sc-eQTL 1.20e-02 -0.228 0.0901 0.398 MAIT L2
ENSG00000116641 DOCK7 355060 sc-eQTL 7.89e-01 -0.0235 0.0876 0.398 MAIT L2
ENSG00000125703 ATG4C 259314 sc-eQTL 1.28e-02 -0.229 0.091 0.398 MAIT L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 6.75e-01 -0.0389 0.0925 0.398 MAIT L2
ENSG00000162607 USP1 607149 sc-eQTL 5.54e-01 -0.0544 0.0918 0.398 MAIT L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.30e-01 0.144 0.0948 0.398 MAIT L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.99e-01 -0.121 0.0938 0.4 NK_CD56bright L2
ENSG00000088035 ALG6 -324129 sc-eQTL 1.81e-01 0.129 0.0962 0.4 NK_CD56bright L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.49e-01 -0.00532 0.0837 0.4 NK_CD56bright L2
ENSG00000125703 ATG4C 259314 sc-eQTL 2.82e-01 -0.101 0.0932 0.4 NK_CD56bright L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 6.22e-01 0.048 0.0973 0.4 NK_CD56bright L2
ENSG00000162607 USP1 607149 sc-eQTL 4.21e-01 0.0808 0.1 0.4 NK_CD56bright L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.77e-02 0.199 0.095 0.4 NK_CD56bright L2
ENSG00000079739 PGM1 -549965 sc-eQTL 7.30e-01 0.0249 0.072 0.401 NK_CD56dim L2
ENSG00000088035 ALG6 -324129 sc-eQTL 2.38e-01 0.108 0.0911 0.401 NK_CD56dim L2
ENSG00000116641 DOCK7 355060 sc-eQTL 8.60e-01 0.014 0.0795 0.401 NK_CD56dim L2
ENSG00000125703 ATG4C 259314 sc-eQTL 2.82e-01 0.087 0.0806 0.401 NK_CD56dim L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.02e-01 -0.15 0.0913 0.401 NK_CD56dim L2
ENSG00000162607 USP1 607149 sc-eQTL 3.48e-01 -0.0837 0.089 0.401 NK_CD56dim L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 3.04e-01 0.102 0.0991 0.401 NK_CD56dim L2
ENSG00000079739 PGM1 -549965 sc-eQTL 8.92e-01 -0.0136 0.1 0.411 NK_HLA L2
ENSG00000088035 ALG6 -324129 sc-eQTL 9.13e-01 -0.0114 0.104 0.411 NK_HLA L2
ENSG00000116641 DOCK7 355060 sc-eQTL 6.62e-01 0.0348 0.0794 0.411 NK_HLA L2
ENSG00000125703 ATG4C 259314 sc-eQTL 5.47e-01 -0.0557 0.0923 0.411 NK_HLA L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 3.37e-01 -0.0932 0.0968 0.411 NK_HLA L2
ENSG00000162607 USP1 607149 sc-eQTL 8.82e-01 0.0151 0.102 0.411 NK_HLA L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.22e-01 0.143 0.0919 0.411 NK_HLA L2
ENSG00000079739 PGM1 -549965 sc-eQTL 7.25e-01 0.0283 0.0804 0.401 NK_cytokine L2
ENSG00000088035 ALG6 -324129 sc-eQTL 4.51e-02 0.182 0.0901 0.401 NK_cytokine L2
ENSG00000116641 DOCK7 355060 sc-eQTL 1.62e-01 -0.118 0.0839 0.401 NK_cytokine L2
ENSG00000125703 ATG4C 259314 sc-eQTL 6.17e-02 -0.161 0.0855 0.401 NK_cytokine L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 9.86e-03 -0.229 0.0878 0.401 NK_cytokine L2
ENSG00000162607 USP1 607149 sc-eQTL 7.09e-01 -0.0351 0.0938 0.401 NK_cytokine L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 6.56e-01 0.0424 0.0951 0.401 NK_cytokine L2
ENSG00000079739 PGM1 -549965 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -324129 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 355060 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 259314 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 607149 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -549965 sc-eQTL 2.37e-01 -0.102 0.0861 0.398 Pro_T L2
ENSG00000088035 ALG6 -324129 sc-eQTL 9.12e-01 0.00973 0.0879 0.398 Pro_T L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.71e-01 0.00321 0.0882 0.398 Pro_T L2
ENSG00000125703 ATG4C 259314 sc-eQTL 6.76e-01 -0.0324 0.0772 0.398 Pro_T L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 8.01e-01 0.0195 0.0774 0.398 Pro_T L2
ENSG00000162607 USP1 607149 sc-eQTL 4.04e-01 -0.0444 0.0532 0.398 Pro_T L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.21e-01 -0.139 0.0895 0.398 Pro_T L2
ENSG00000079739 PGM1 -549965 sc-eQTL 8.47e-02 -0.157 0.0907 0.4 Treg L2
ENSG00000088035 ALG6 -324129 sc-eQTL 5.12e-01 0.0641 0.0975 0.4 Treg L2
ENSG00000116641 DOCK7 355060 sc-eQTL 5.42e-01 -0.0546 0.0896 0.4 Treg L2
ENSG00000125703 ATG4C 259314 sc-eQTL 6.00e-01 -0.0481 0.0915 0.4 Treg L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 3.34e-01 -0.0927 0.0956 0.4 Treg L2
ENSG00000162607 USP1 607149 sc-eQTL 2.17e-01 -0.114 0.0924 0.4 Treg L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.91e-01 0.0968 0.0914 0.4 Treg L2
ENSG00000079739 PGM1 -549965 sc-eQTL 5.73e-01 -0.0519 0.0921 0.402 cDC L2
ENSG00000088035 ALG6 -324129 sc-eQTL 1.20e-01 0.145 0.0928 0.402 cDC L2
ENSG00000116641 DOCK7 355060 sc-eQTL 1.83e-01 -0.122 0.0913 0.402 cDC L2
ENSG00000125703 ATG4C 259314 sc-eQTL 6.41e-01 -0.0372 0.0796 0.402 cDC L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.05e-01 -0.0383 0.101 0.402 cDC L2
ENSG00000162607 USP1 607149 sc-eQTL 7.58e-01 -0.0277 0.0898 0.402 cDC L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.26e-01 -0.124 0.0806 0.402 cDC L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.36e-01 -0.127 0.0849 0.4 cMono_IL1B L2
ENSG00000088035 ALG6 -324129 sc-eQTL 6.87e-01 -0.0345 0.0854 0.4 cMono_IL1B L2
ENSG00000116641 DOCK7 355060 sc-eQTL 9.34e-01 -0.00742 0.0901 0.4 cMono_IL1B L2
ENSG00000125703 ATG4C 259314 sc-eQTL 4.39e-01 -0.049 0.0632 0.4 cMono_IL1B L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.24e-01 -0.138 0.0892 0.4 cMono_IL1B L2
ENSG00000162607 USP1 607149 sc-eQTL 6.97e-01 -0.0309 0.0791 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 848597 sc-eQTL 3.44e-01 0.0752 0.0793 0.4 cMono_IL1B L2
ENSG00000079739 PGM1 -549965 sc-eQTL 1.21e-01 -0.148 0.0954 0.4 cMono_S100A L2
ENSG00000088035 ALG6 -324129 sc-eQTL 2.37e-01 -0.115 0.0969 0.4 cMono_S100A L2
ENSG00000116641 DOCK7 355060 sc-eQTL 4.07e-01 -0.0748 0.09 0.4 cMono_S100A L2
ENSG00000125703 ATG4C 259314 sc-eQTL 8.60e-01 0.0138 0.078 0.4 cMono_S100A L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 8.19e-01 -0.0202 0.088 0.4 cMono_S100A L2
ENSG00000162607 USP1 607149 sc-eQTL 5.17e-01 0.0587 0.0905 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 848597 sc-eQTL 8.71e-01 -0.0122 0.0754 0.4 cMono_S100A L2
ENSG00000079739 PGM1 -549965 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -324129 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 355060 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 259314 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 607149 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -549965 sc-eQTL 2.01e-01 -0.123 0.0961 0.398 intMono L2
ENSG00000088035 ALG6 -324129 sc-eQTL 4.37e-01 0.0698 0.0897 0.398 intMono L2
ENSG00000116641 DOCK7 355060 sc-eQTL 7.06e-01 0.0346 0.0917 0.398 intMono L2
ENSG00000125703 ATG4C 259314 sc-eQTL 4.27e-02 0.177 0.0867 0.398 intMono L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 7.99e-01 0.0247 0.0965 0.398 intMono L2
ENSG00000162607 USP1 607149 sc-eQTL 2.21e-01 0.12 0.0978 0.398 intMono L2
ENSG00000240563 L1TD1 848597 sc-eQTL 5.50e-01 0.0432 0.0721 0.398 intMono L2
ENSG00000079739 PGM1 -549965 sc-eQTL 8.89e-01 0.0122 0.0879 0.398 ncMono L2
ENSG00000088035 ALG6 -324129 sc-eQTL 9.00e-01 0.0121 0.0965 0.398 ncMono L2
ENSG00000116641 DOCK7 355060 sc-eQTL 4.55e-01 -0.0711 0.0949 0.398 ncMono L2
ENSG00000125703 ATG4C 259314 sc-eQTL 3.61e-01 0.0811 0.0886 0.398 ncMono L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 3.61e-01 -0.0848 0.0926 0.398 ncMono L2
ENSG00000162607 USP1 607149 sc-eQTL 1.03e-01 0.154 0.0942 0.398 ncMono L2
ENSG00000240563 L1TD1 848597 sc-eQTL 5.68e-01 0.0384 0.0672 0.398 ncMono L2
ENSG00000079739 PGM1 -549965 sc-eQTL 3.64e-01 -0.0945 0.104 0.415 pDC L2
ENSG00000088035 ALG6 -324129 sc-eQTL 2.33e-01 -0.121 0.101 0.415 pDC L2
ENSG00000116641 DOCK7 355060 sc-eQTL 4.86e-01 0.0723 0.103 0.415 pDC L2
ENSG00000125703 ATG4C 259314 sc-eQTL 7.48e-01 0.0299 0.0929 0.415 pDC L2
ENSG00000142856 ITGB3BP -550275 sc-eQTL 5.85e-01 -0.057 0.104 0.415 pDC L2
ENSG00000162607 USP1 607149 sc-eQTL 8.19e-01 -0.0244 0.106 0.415 pDC L2
ENSG00000203965 EFCAB7 -479926 sc-eQTL 4.88e-01 0.0641 0.0921 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -549965 sc-eQTL 2.56e-01 -0.0992 0.087 0.4 B_Memory LOneK1K
ENSG00000088035 ALG6 -324129 sc-eQTL 1.24e-01 0.148 0.096 0.4 B_Memory LOneK1K
ENSG00000116641 DOCK7 355060 sc-eQTL 8.77e-01 -0.013 0.0838 0.4 B_Memory LOneK1K
ENSG00000125703 ATG4C 259314 sc-eQTL 7.73e-01 0.0195 0.0677 0.4 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -550275 sc-eQTL 6.13e-01 0.045 0.0889 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 607149 sc-eQTL 9.58e-02 -0.144 0.0858 0.4 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.57e-01 0.105 0.0925 0.4 B_Memory LOneK1K
ENSG00000079739 PGM1 -549965 sc-eQTL 4.05e-01 -0.0763 0.0916 0.4 B_Naive LOneK1K
ENSG00000088035 ALG6 -324129 sc-eQTL 7.68e-01 0.0279 0.0944 0.4 B_Naive LOneK1K
ENSG00000116641 DOCK7 355060 sc-eQTL 4.76e-01 -0.0629 0.0881 0.4 B_Naive LOneK1K
ENSG00000125703 ATG4C 259314 sc-eQTL 7.64e-01 0.0202 0.0673 0.4 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -550275 sc-eQTL 9.60e-01 0.00479 0.0951 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 607149 sc-eQTL 3.51e-02 -0.172 0.0809 0.4 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -479926 sc-eQTL 6.13e-02 -0.178 0.0948 0.4 B_Naive LOneK1K
ENSG00000079739 PGM1 -549965 sc-eQTL 5.94e-02 -0.165 0.0871 0.4 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -324129 sc-eQTL 4.70e-01 -0.0615 0.085 0.4 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 355060 sc-eQTL 5.13e-01 -0.0561 0.0856 0.4 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 259314 sc-eQTL 4.39e-01 -0.0459 0.0591 0.4 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -550275 sc-eQTL 2.10e-01 -0.11 0.0873 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 607149 sc-eQTL 5.90e-01 0.0404 0.0748 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 848597 sc-eQTL 9.94e-01 0.000649 0.0811 0.4 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -549965 sc-eQTL 5.80e-01 -0.0466 0.0841 0.399 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -324129 sc-eQTL 6.51e-01 0.0432 0.0955 0.399 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 355060 sc-eQTL 6.07e-01 0.0487 0.0945 0.399 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 259314 sc-eQTL 4.52e-01 0.0607 0.0805 0.399 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -550275 sc-eQTL 4.66e-01 -0.0683 0.0935 0.399 CD16_Mono LOneK1K
ENSG00000162607 USP1 607149 sc-eQTL 4.02e-02 0.18 0.0871 0.399 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 848597 sc-eQTL 3.16e-01 0.0602 0.0599 0.399 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -549965 sc-eQTL 6.11e-01 0.0359 0.0705 0.401 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -324129 sc-eQTL 3.30e-02 0.18 0.0838 0.401 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 355060 sc-eQTL 6.03e-01 -0.0395 0.0759 0.401 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 259314 sc-eQTL 3.59e-01 -0.0695 0.0756 0.401 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -550275 sc-eQTL 1.42e-02 -0.219 0.0885 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 607149 sc-eQTL 5.22e-01 -0.0522 0.0814 0.401 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -479926 sc-eQTL 2.26e-01 0.12 0.0988 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 848597 eQTL 0.00686 -0.109 0.0402 0.0 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -324129 1.32e-06 9.1e-07 3.08e-07 6.31e-07 3.46e-07 4.82e-07 1.33e-06 3.98e-07 1.4e-06 4.66e-07 1.48e-06 6.55e-07 2e-06 2.78e-07 5.73e-07 9.16e-07 8.3e-07 6.8e-07 8.01e-07 6.82e-07 6.36e-07 1.42e-06 8.91e-07 6.57e-07 1.97e-06 6.01e-07 8.68e-07 7.81e-07 1.29e-06 1.23e-06 5.77e-07 1.72e-07 2.19e-07 6.86e-07 4.49e-07 4.47e-07 5.04e-07 1.54e-07 3.6e-07 2.5e-07 2.91e-07 1.57e-06 5.81e-08 1.94e-08 1.79e-07 1.26e-07 2.28e-07 8.48e-08 1.58e-07