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Genes within 1Mb (chr1:63042886:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -550525 sc-eQTL 1.51e-01 -0.113 0.0784 0.4 B L1
ENSG00000088035 ALG6 -324689 sc-eQTL 2.73e-01 0.0894 0.0814 0.4 B L1
ENSG00000116641 DOCK7 354500 sc-eQTL 3.95e-01 -0.0694 0.0815 0.4 B L1
ENSG00000125703 ATG4C 258754 sc-eQTL 8.69e-01 -0.00938 0.0567 0.4 B L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.15e-01 -0.033 0.0902 0.4 B L1
ENSG00000162607 USP1 606589 sc-eQTL 1.59e-02 -0.188 0.0773 0.4 B L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.19e-01 -0.0922 0.0923 0.4 B L1
ENSG00000079739 PGM1 -550525 sc-eQTL 1.22e-01 -0.104 0.0671 0.4 CD4T L1
ENSG00000088035 ALG6 -324689 sc-eQTL 5.25e-01 -0.0474 0.0744 0.4 CD4T L1
ENSG00000116641 DOCK7 354500 sc-eQTL 5.02e-01 -0.0506 0.0753 0.4 CD4T L1
ENSG00000125703 ATG4C 258754 sc-eQTL 7.28e-01 -0.0212 0.0609 0.4 CD4T L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 4.92e-02 -0.169 0.0857 0.4 CD4T L1
ENSG00000162607 USP1 606589 sc-eQTL 8.19e-02 -0.103 0.0587 0.4 CD4T L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 4.18e-02 -0.157 0.0768 0.4 CD4T L1
ENSG00000079739 PGM1 -550525 sc-eQTL 4.89e-03 -0.209 0.0734 0.4 CD8T L1
ENSG00000088035 ALG6 -324689 sc-eQTL 1.80e-01 0.11 0.0821 0.4 CD8T L1
ENSG00000116641 DOCK7 354500 sc-eQTL 6.78e-01 -0.0347 0.0835 0.4 CD8T L1
ENSG00000125703 ATG4C 258754 sc-eQTL 6.89e-01 -0.0318 0.0793 0.4 CD8T L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.41e-01 -0.13 0.0882 0.4 CD8T L1
ENSG00000162607 USP1 606589 sc-eQTL 4.02e-01 -0.058 0.069 0.4 CD8T L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.36e-01 -0.132 0.0879 0.4 CD8T L1
ENSG00000079739 PGM1 -550525 sc-eQTL 5.66e-01 -0.0491 0.0854 0.403 DC L1
ENSG00000088035 ALG6 -324689 sc-eQTL 8.89e-01 -0.0123 0.0882 0.403 DC L1
ENSG00000116641 DOCK7 354500 sc-eQTL 6.31e-01 -0.0434 0.0904 0.403 DC L1
ENSG00000125703 ATG4C 258754 sc-eQTL 5.33e-01 0.0441 0.0707 0.403 DC L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 8.46e-01 -0.0192 0.0989 0.403 DC L1
ENSG00000162607 USP1 606589 sc-eQTL 8.55e-01 -0.0158 0.0863 0.403 DC L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.49e-01 0.0991 0.0858 0.403 DC L1
ENSG00000079739 PGM1 -550525 sc-eQTL 6.12e-02 -0.153 0.0814 0.4 Mono L1
ENSG00000088035 ALG6 -324689 sc-eQTL 4.72e-01 -0.0616 0.0855 0.4 Mono L1
ENSG00000116641 DOCK7 354500 sc-eQTL 7.22e-01 -0.0295 0.0828 0.4 Mono L1
ENSG00000125703 ATG4C 258754 sc-eQTL 9.59e-01 -0.00291 0.056 0.4 Mono L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.94e-01 -0.115 0.0881 0.4 Mono L1
ENSG00000162607 USP1 606589 sc-eQTL 2.62e-01 0.0815 0.0724 0.4 Mono L1
ENSG00000240563 L1TD1 848037 sc-eQTL 5.95e-01 0.0361 0.0678 0.4 Mono L1
ENSG00000079739 PGM1 -550525 sc-eQTL 8.27e-01 0.0152 0.0693 0.399 NK L1
ENSG00000088035 ALG6 -324689 sc-eQTL 1.09e-02 0.206 0.08 0.399 NK L1
ENSG00000116641 DOCK7 354500 sc-eQTL 2.85e-01 -0.0716 0.0668 0.399 NK L1
ENSG00000125703 ATG4C 258754 sc-eQTL 2.45e-01 -0.0835 0.0717 0.399 NK L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.70e-02 -0.212 0.0882 0.399 NK L1
ENSG00000162607 USP1 606589 sc-eQTL 5.19e-01 -0.0515 0.0798 0.399 NK L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.26e-01 0.148 0.0965 0.399 NK L1
ENSG00000079739 PGM1 -550525 sc-eQTL 6.23e-01 -0.0393 0.0798 0.4 Other_T L1
ENSG00000088035 ALG6 -324689 sc-eQTL 1.49e-01 -0.116 0.0798 0.4 Other_T L1
ENSG00000116641 DOCK7 354500 sc-eQTL 5.98e-01 0.0432 0.0819 0.4 Other_T L1
ENSG00000125703 ATG4C 258754 sc-eQTL 6.34e-02 -0.131 0.0703 0.4 Other_T L1
ENSG00000142856 ITGB3BP -550835 sc-eQTL 8.87e-01 0.00897 0.0629 0.4 Other_T L1
ENSG00000162607 USP1 606589 sc-eQTL 2.97e-01 0.0569 0.0544 0.4 Other_T L1
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.37e-01 0.115 0.0967 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -550525 sc-eQTL 7.44e-02 -0.187 0.104 0.403 B_Activated L2
ENSG00000088035 ALG6 -324689 sc-eQTL 6.39e-01 -0.0473 0.101 0.403 B_Activated L2
ENSG00000116641 DOCK7 354500 sc-eQTL 3.63e-01 -0.0853 0.0935 0.403 B_Activated L2
ENSG00000125703 ATG4C 258754 sc-eQTL 1.92e-01 0.129 0.0981 0.403 B_Activated L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.69e-01 0.0284 0.0963 0.403 B_Activated L2
ENSG00000162607 USP1 606589 sc-eQTL 3.82e-01 -0.0913 0.104 0.403 B_Activated L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.77e-01 -0.0806 0.0909 0.403 B_Activated L2
ENSG00000079739 PGM1 -550525 sc-eQTL 2.15e-01 -0.117 0.0943 0.401 B_Intermediate L2
ENSG00000088035 ALG6 -324689 sc-eQTL 2.13e-01 0.12 0.0958 0.401 B_Intermediate L2
ENSG00000116641 DOCK7 354500 sc-eQTL 6.95e-01 -0.036 0.0918 0.401 B_Intermediate L2
ENSG00000125703 ATG4C 258754 sc-eQTL 4.13e-01 -0.0637 0.0776 0.401 B_Intermediate L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 4.94e-01 -0.0634 0.0925 0.401 B_Intermediate L2
ENSG00000162607 USP1 606589 sc-eQTL 6.51e-01 -0.0419 0.0924 0.401 B_Intermediate L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.34e-02 0.207 0.0906 0.401 B_Intermediate L2
ENSG00000079739 PGM1 -550525 sc-eQTL 9.91e-01 0.00106 0.0928 0.403 B_Memory L2
ENSG00000088035 ALG6 -324689 sc-eQTL 4.59e-01 0.07 0.0942 0.403 B_Memory L2
ENSG00000116641 DOCK7 354500 sc-eQTL 2.55e-01 0.101 0.0882 0.403 B_Memory L2
ENSG00000125703 ATG4C 258754 sc-eQTL 1.68e-01 0.116 0.0837 0.403 B_Memory L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 2.00e-01 0.123 0.0959 0.403 B_Memory L2
ENSG00000162607 USP1 606589 sc-eQTL 9.05e-02 -0.164 0.0964 0.403 B_Memory L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.32e-01 0.0927 0.0953 0.403 B_Memory L2
ENSG00000079739 PGM1 -550525 sc-eQTL 7.87e-01 -0.0255 0.0942 0.4 B_Naive1 L2
ENSG00000088035 ALG6 -324689 sc-eQTL 9.21e-01 -0.00943 0.0945 0.4 B_Naive1 L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.82e-01 0.00206 0.0906 0.4 B_Naive1 L2
ENSG00000125703 ATG4C 258754 sc-eQTL 5.64e-01 0.0403 0.0697 0.4 B_Naive1 L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 4.04e-01 -0.0774 0.0924 0.4 B_Naive1 L2
ENSG00000162607 USP1 606589 sc-eQTL 7.80e-02 -0.143 0.0808 0.4 B_Naive1 L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.90e-02 -0.203 0.0978 0.4 B_Naive1 L2
ENSG00000079739 PGM1 -550525 sc-eQTL 2.47e-01 -0.109 0.0934 0.401 B_Naive2 L2
ENSG00000088035 ALG6 -324689 sc-eQTL 3.75e-01 0.0867 0.0975 0.401 B_Naive2 L2
ENSG00000116641 DOCK7 354500 sc-eQTL 5.56e-01 -0.0554 0.0939 0.401 B_Naive2 L2
ENSG00000125703 ATG4C 258754 sc-eQTL 6.27e-01 -0.044 0.0904 0.401 B_Naive2 L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 6.76e-02 0.179 0.0973 0.401 B_Naive2 L2
ENSG00000162607 USP1 606589 sc-eQTL 4.60e-01 -0.069 0.0932 0.401 B_Naive2 L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 6.93e-01 -0.0386 0.0975 0.401 B_Naive2 L2
ENSG00000079739 PGM1 -550525 sc-eQTL 3.72e-01 0.0848 0.0948 0.4 CD4_CTL L2
ENSG00000088035 ALG6 -324689 sc-eQTL 7.68e-01 -0.0296 0.1 0.4 CD4_CTL L2
ENSG00000116641 DOCK7 354500 sc-eQTL 7.07e-01 -0.0331 0.0877 0.4 CD4_CTL L2
ENSG00000125703 ATG4C 258754 sc-eQTL 3.74e-01 -0.0807 0.0906 0.4 CD4_CTL L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 9.98e-01 -0.000208 0.0971 0.4 CD4_CTL L2
ENSG00000162607 USP1 606589 sc-eQTL 7.23e-01 -0.0327 0.0924 0.4 CD4_CTL L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 9.91e-01 -0.00109 0.0923 0.4 CD4_CTL L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.32e-01 -0.114 0.0753 0.4 CD4_Naive L2
ENSG00000088035 ALG6 -324689 sc-eQTL 4.59e-01 -0.061 0.0821 0.4 CD4_Naive L2
ENSG00000116641 DOCK7 354500 sc-eQTL 8.52e-01 -0.0151 0.0808 0.4 CD4_Naive L2
ENSG00000125703 ATG4C 258754 sc-eQTL 3.53e-01 0.0664 0.0713 0.4 CD4_Naive L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.44e-01 -0.128 0.0869 0.4 CD4_Naive L2
ENSG00000162607 USP1 606589 sc-eQTL 6.52e-02 -0.123 0.0662 0.4 CD4_Naive L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 4.37e-02 -0.174 0.0858 0.4 CD4_Naive L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.94e-02 -0.183 0.0778 0.4 CD4_TCM L2
ENSG00000088035 ALG6 -324689 sc-eQTL 6.57e-01 -0.0407 0.0915 0.4 CD4_TCM L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.09e-01 0.00926 0.0811 0.4 CD4_TCM L2
ENSG00000125703 ATG4C 258754 sc-eQTL 3.71e-01 -0.0706 0.0788 0.4 CD4_TCM L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 2.63e-01 -0.104 0.0928 0.4 CD4_TCM L2
ENSG00000162607 USP1 606589 sc-eQTL 5.28e-01 -0.0481 0.0762 0.4 CD4_TCM L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.38e-01 -0.133 0.0896 0.4 CD4_TCM L2
ENSG00000079739 PGM1 -550525 sc-eQTL 4.06e-01 0.0773 0.093 0.4 CD4_TEM L2
ENSG00000088035 ALG6 -324689 sc-eQTL 6.35e-02 -0.173 0.0928 0.4 CD4_TEM L2
ENSG00000116641 DOCK7 354500 sc-eQTL 1.33e-01 -0.137 0.0908 0.4 CD4_TEM L2
ENSG00000125703 ATG4C 258754 sc-eQTL 5.82e-01 -0.0488 0.0886 0.4 CD4_TEM L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.77e-02 -0.216 0.0903 0.4 CD4_TEM L2
ENSG00000162607 USP1 606589 sc-eQTL 4.09e-02 -0.176 0.0858 0.4 CD4_TEM L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 8.54e-01 0.0174 0.0948 0.4 CD4_TEM L2
ENSG00000079739 PGM1 -550525 sc-eQTL 6.59e-02 -0.157 0.0851 0.4 CD8_CTL L2
ENSG00000088035 ALG6 -324689 sc-eQTL 8.43e-01 -0.0181 0.0912 0.4 CD8_CTL L2
ENSG00000116641 DOCK7 354500 sc-eQTL 5.92e-01 -0.0464 0.0865 0.4 CD8_CTL L2
ENSG00000125703 ATG4C 258754 sc-eQTL 2.16e-01 -0.114 0.0918 0.4 CD8_CTL L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 3.59e-01 -0.0879 0.0956 0.4 CD8_CTL L2
ENSG00000162607 USP1 606589 sc-eQTL 2.48e-01 -0.099 0.0855 0.4 CD8_CTL L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 5.14e-01 -0.064 0.098 0.4 CD8_CTL L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.12e-03 -0.278 0.0841 0.4 CD8_Naive L2
ENSG00000088035 ALG6 -324689 sc-eQTL 9.36e-01 0.00721 0.0893 0.4 CD8_Naive L2
ENSG00000116641 DOCK7 354500 sc-eQTL 1.28e-01 -0.14 0.0918 0.4 CD8_Naive L2
ENSG00000125703 ATG4C 258754 sc-eQTL 9.83e-02 -0.146 0.088 0.4 CD8_Naive L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.55e-02 -0.159 0.0891 0.4 CD8_Naive L2
ENSG00000162607 USP1 606589 sc-eQTL 4.36e-01 -0.0592 0.0758 0.4 CD8_Naive L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.57e-02 -0.177 0.0837 0.4 CD8_Naive L2
ENSG00000079739 PGM1 -550525 sc-eQTL 3.68e-01 0.0896 0.0992 0.391 CD8_TCM L2
ENSG00000088035 ALG6 -324689 sc-eQTL 4.92e-01 0.0693 0.101 0.391 CD8_TCM L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.40e-01 0.00738 0.0983 0.391 CD8_TCM L2
ENSG00000125703 ATG4C 258754 sc-eQTL 1.61e-01 0.141 0.1 0.391 CD8_TCM L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.12e-01 0.155 0.097 0.391 CD8_TCM L2
ENSG00000162607 USP1 606589 sc-eQTL 1.07e-01 -0.151 0.0933 0.391 CD8_TCM L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 9.12e-01 -0.0111 0.0995 0.391 CD8_TCM L2
ENSG00000079739 PGM1 -550525 sc-eQTL 3.45e-01 -0.0908 0.0959 0.404 CD8_TEM L2
ENSG00000088035 ALG6 -324689 sc-eQTL 2.84e-01 0.103 0.0962 0.404 CD8_TEM L2
ENSG00000116641 DOCK7 354500 sc-eQTL 4.91e-01 0.0645 0.0934 0.404 CD8_TEM L2
ENSG00000125703 ATG4C 258754 sc-eQTL 8.61e-01 -0.0158 0.0899 0.404 CD8_TEM L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 3.60e-01 -0.089 0.0971 0.404 CD8_TEM L2
ENSG00000162607 USP1 606589 sc-eQTL 4.80e-01 0.0656 0.0927 0.404 CD8_TEM L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.07e-01 -0.119 0.094 0.404 CD8_TEM L2
ENSG00000079739 PGM1 -550525 sc-eQTL 5.46e-01 0.0559 0.0923 0.398 MAIT L2
ENSG00000088035 ALG6 -324689 sc-eQTL 1.20e-02 -0.228 0.0901 0.398 MAIT L2
ENSG00000116641 DOCK7 354500 sc-eQTL 7.89e-01 -0.0235 0.0876 0.398 MAIT L2
ENSG00000125703 ATG4C 258754 sc-eQTL 1.28e-02 -0.229 0.091 0.398 MAIT L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 6.75e-01 -0.0389 0.0925 0.398 MAIT L2
ENSG00000162607 USP1 606589 sc-eQTL 5.54e-01 -0.0544 0.0918 0.398 MAIT L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.30e-01 0.144 0.0948 0.398 MAIT L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.99e-01 -0.121 0.0938 0.4 NK_CD56bright L2
ENSG00000088035 ALG6 -324689 sc-eQTL 1.81e-01 0.129 0.0962 0.4 NK_CD56bright L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.49e-01 -0.00532 0.0837 0.4 NK_CD56bright L2
ENSG00000125703 ATG4C 258754 sc-eQTL 2.82e-01 -0.101 0.0932 0.4 NK_CD56bright L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 6.22e-01 0.048 0.0973 0.4 NK_CD56bright L2
ENSG00000162607 USP1 606589 sc-eQTL 4.21e-01 0.0808 0.1 0.4 NK_CD56bright L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.77e-02 0.199 0.095 0.4 NK_CD56bright L2
ENSG00000079739 PGM1 -550525 sc-eQTL 7.30e-01 0.0249 0.072 0.401 NK_CD56dim L2
ENSG00000088035 ALG6 -324689 sc-eQTL 2.38e-01 0.108 0.0911 0.401 NK_CD56dim L2
ENSG00000116641 DOCK7 354500 sc-eQTL 8.60e-01 0.014 0.0795 0.401 NK_CD56dim L2
ENSG00000125703 ATG4C 258754 sc-eQTL 2.82e-01 0.087 0.0806 0.401 NK_CD56dim L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.02e-01 -0.15 0.0913 0.401 NK_CD56dim L2
ENSG00000162607 USP1 606589 sc-eQTL 3.48e-01 -0.0837 0.089 0.401 NK_CD56dim L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 3.04e-01 0.102 0.0991 0.401 NK_CD56dim L2
ENSG00000079739 PGM1 -550525 sc-eQTL 8.92e-01 -0.0136 0.1 0.411 NK_HLA L2
ENSG00000088035 ALG6 -324689 sc-eQTL 9.13e-01 -0.0114 0.104 0.411 NK_HLA L2
ENSG00000116641 DOCK7 354500 sc-eQTL 6.62e-01 0.0348 0.0794 0.411 NK_HLA L2
ENSG00000125703 ATG4C 258754 sc-eQTL 5.47e-01 -0.0557 0.0923 0.411 NK_HLA L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 3.37e-01 -0.0932 0.0968 0.411 NK_HLA L2
ENSG00000162607 USP1 606589 sc-eQTL 8.82e-01 0.0151 0.102 0.411 NK_HLA L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.22e-01 0.143 0.0919 0.411 NK_HLA L2
ENSG00000079739 PGM1 -550525 sc-eQTL 7.25e-01 0.0283 0.0804 0.401 NK_cytokine L2
ENSG00000088035 ALG6 -324689 sc-eQTL 4.51e-02 0.182 0.0901 0.401 NK_cytokine L2
ENSG00000116641 DOCK7 354500 sc-eQTL 1.62e-01 -0.118 0.0839 0.401 NK_cytokine L2
ENSG00000125703 ATG4C 258754 sc-eQTL 6.17e-02 -0.161 0.0855 0.401 NK_cytokine L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 9.86e-03 -0.229 0.0878 0.401 NK_cytokine L2
ENSG00000162607 USP1 606589 sc-eQTL 7.09e-01 -0.0351 0.0938 0.401 NK_cytokine L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 6.56e-01 0.0424 0.0951 0.401 NK_cytokine L2
ENSG00000079739 PGM1 -550525 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -324689 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 354500 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 258754 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 606589 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -550525 sc-eQTL 2.37e-01 -0.102 0.0861 0.398 Pro_T L2
ENSG00000088035 ALG6 -324689 sc-eQTL 9.12e-01 0.00973 0.0879 0.398 Pro_T L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.71e-01 0.00321 0.0882 0.398 Pro_T L2
ENSG00000125703 ATG4C 258754 sc-eQTL 6.76e-01 -0.0324 0.0772 0.398 Pro_T L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 8.01e-01 0.0195 0.0774 0.398 Pro_T L2
ENSG00000162607 USP1 606589 sc-eQTL 4.04e-01 -0.0444 0.0532 0.398 Pro_T L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.21e-01 -0.139 0.0895 0.398 Pro_T L2
ENSG00000079739 PGM1 -550525 sc-eQTL 8.47e-02 -0.157 0.0907 0.4 Treg L2
ENSG00000088035 ALG6 -324689 sc-eQTL 5.12e-01 0.0641 0.0975 0.4 Treg L2
ENSG00000116641 DOCK7 354500 sc-eQTL 5.42e-01 -0.0546 0.0896 0.4 Treg L2
ENSG00000125703 ATG4C 258754 sc-eQTL 6.00e-01 -0.0481 0.0915 0.4 Treg L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 3.34e-01 -0.0927 0.0956 0.4 Treg L2
ENSG00000162607 USP1 606589 sc-eQTL 2.17e-01 -0.114 0.0924 0.4 Treg L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.91e-01 0.0968 0.0914 0.4 Treg L2
ENSG00000079739 PGM1 -550525 sc-eQTL 5.73e-01 -0.0519 0.0921 0.402 cDC L2
ENSG00000088035 ALG6 -324689 sc-eQTL 1.20e-01 0.145 0.0928 0.402 cDC L2
ENSG00000116641 DOCK7 354500 sc-eQTL 1.83e-01 -0.122 0.0913 0.402 cDC L2
ENSG00000125703 ATG4C 258754 sc-eQTL 6.41e-01 -0.0372 0.0796 0.402 cDC L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.05e-01 -0.0383 0.101 0.402 cDC L2
ENSG00000162607 USP1 606589 sc-eQTL 7.58e-01 -0.0277 0.0898 0.402 cDC L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.26e-01 -0.124 0.0806 0.402 cDC L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.36e-01 -0.127 0.0849 0.4 cMono_IL1B L2
ENSG00000088035 ALG6 -324689 sc-eQTL 6.87e-01 -0.0345 0.0854 0.4 cMono_IL1B L2
ENSG00000116641 DOCK7 354500 sc-eQTL 9.34e-01 -0.00742 0.0901 0.4 cMono_IL1B L2
ENSG00000125703 ATG4C 258754 sc-eQTL 4.39e-01 -0.049 0.0632 0.4 cMono_IL1B L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.24e-01 -0.138 0.0892 0.4 cMono_IL1B L2
ENSG00000162607 USP1 606589 sc-eQTL 6.97e-01 -0.0309 0.0791 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 848037 sc-eQTL 3.44e-01 0.0752 0.0793 0.4 cMono_IL1B L2
ENSG00000079739 PGM1 -550525 sc-eQTL 1.21e-01 -0.148 0.0954 0.4 cMono_S100A L2
ENSG00000088035 ALG6 -324689 sc-eQTL 2.37e-01 -0.115 0.0969 0.4 cMono_S100A L2
ENSG00000116641 DOCK7 354500 sc-eQTL 4.07e-01 -0.0748 0.09 0.4 cMono_S100A L2
ENSG00000125703 ATG4C 258754 sc-eQTL 8.60e-01 0.0138 0.078 0.4 cMono_S100A L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 8.19e-01 -0.0202 0.088 0.4 cMono_S100A L2
ENSG00000162607 USP1 606589 sc-eQTL 5.17e-01 0.0587 0.0905 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 848037 sc-eQTL 8.71e-01 -0.0122 0.0754 0.4 cMono_S100A L2
ENSG00000079739 PGM1 -550525 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -324689 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 354500 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 258754 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 606589 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -550525 sc-eQTL 2.01e-01 -0.123 0.0961 0.398 intMono L2
ENSG00000088035 ALG6 -324689 sc-eQTL 4.37e-01 0.0698 0.0897 0.398 intMono L2
ENSG00000116641 DOCK7 354500 sc-eQTL 7.06e-01 0.0346 0.0917 0.398 intMono L2
ENSG00000125703 ATG4C 258754 sc-eQTL 4.27e-02 0.177 0.0867 0.398 intMono L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 7.99e-01 0.0247 0.0965 0.398 intMono L2
ENSG00000162607 USP1 606589 sc-eQTL 2.21e-01 0.12 0.0978 0.398 intMono L2
ENSG00000240563 L1TD1 848037 sc-eQTL 5.50e-01 0.0432 0.0721 0.398 intMono L2
ENSG00000079739 PGM1 -550525 sc-eQTL 8.89e-01 0.0122 0.0879 0.398 ncMono L2
ENSG00000088035 ALG6 -324689 sc-eQTL 9.00e-01 0.0121 0.0965 0.398 ncMono L2
ENSG00000116641 DOCK7 354500 sc-eQTL 4.55e-01 -0.0711 0.0949 0.398 ncMono L2
ENSG00000125703 ATG4C 258754 sc-eQTL 3.61e-01 0.0811 0.0886 0.398 ncMono L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 3.61e-01 -0.0848 0.0926 0.398 ncMono L2
ENSG00000162607 USP1 606589 sc-eQTL 1.03e-01 0.154 0.0942 0.398 ncMono L2
ENSG00000240563 L1TD1 848037 sc-eQTL 5.68e-01 0.0384 0.0672 0.398 ncMono L2
ENSG00000079739 PGM1 -550525 sc-eQTL 3.64e-01 -0.0945 0.104 0.415 pDC L2
ENSG00000088035 ALG6 -324689 sc-eQTL 2.33e-01 -0.121 0.101 0.415 pDC L2
ENSG00000116641 DOCK7 354500 sc-eQTL 4.86e-01 0.0723 0.103 0.415 pDC L2
ENSG00000125703 ATG4C 258754 sc-eQTL 7.48e-01 0.0299 0.0929 0.415 pDC L2
ENSG00000142856 ITGB3BP -550835 sc-eQTL 5.85e-01 -0.057 0.104 0.415 pDC L2
ENSG00000162607 USP1 606589 sc-eQTL 8.19e-01 -0.0244 0.106 0.415 pDC L2
ENSG00000203965 EFCAB7 -480486 sc-eQTL 4.88e-01 0.0641 0.0921 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -550525 sc-eQTL 2.56e-01 -0.0992 0.087 0.4 B_Memory LOneK1K
ENSG00000088035 ALG6 -324689 sc-eQTL 1.24e-01 0.148 0.096 0.4 B_Memory LOneK1K
ENSG00000116641 DOCK7 354500 sc-eQTL 8.77e-01 -0.013 0.0838 0.4 B_Memory LOneK1K
ENSG00000125703 ATG4C 258754 sc-eQTL 7.73e-01 0.0195 0.0677 0.4 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -550835 sc-eQTL 6.13e-01 0.045 0.0889 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 606589 sc-eQTL 9.58e-02 -0.144 0.0858 0.4 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.57e-01 0.105 0.0925 0.4 B_Memory LOneK1K
ENSG00000079739 PGM1 -550525 sc-eQTL 4.05e-01 -0.0763 0.0916 0.4 B_Naive LOneK1K
ENSG00000088035 ALG6 -324689 sc-eQTL 7.68e-01 0.0279 0.0944 0.4 B_Naive LOneK1K
ENSG00000116641 DOCK7 354500 sc-eQTL 4.76e-01 -0.0629 0.0881 0.4 B_Naive LOneK1K
ENSG00000125703 ATG4C 258754 sc-eQTL 7.64e-01 0.0202 0.0673 0.4 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -550835 sc-eQTL 9.60e-01 0.00479 0.0951 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 606589 sc-eQTL 3.51e-02 -0.172 0.0809 0.4 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -480486 sc-eQTL 6.13e-02 -0.178 0.0948 0.4 B_Naive LOneK1K
ENSG00000079739 PGM1 -550525 sc-eQTL 5.94e-02 -0.165 0.0871 0.4 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -324689 sc-eQTL 4.70e-01 -0.0615 0.085 0.4 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 354500 sc-eQTL 5.13e-01 -0.0561 0.0856 0.4 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 258754 sc-eQTL 4.39e-01 -0.0459 0.0591 0.4 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -550835 sc-eQTL 2.10e-01 -0.11 0.0873 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 606589 sc-eQTL 5.90e-01 0.0404 0.0748 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 848037 sc-eQTL 9.94e-01 0.000649 0.0811 0.4 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -550525 sc-eQTL 5.80e-01 -0.0466 0.0841 0.399 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -324689 sc-eQTL 6.51e-01 0.0432 0.0955 0.399 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 354500 sc-eQTL 6.07e-01 0.0487 0.0945 0.399 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 258754 sc-eQTL 4.52e-01 0.0607 0.0805 0.399 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -550835 sc-eQTL 4.66e-01 -0.0683 0.0935 0.399 CD16_Mono LOneK1K
ENSG00000162607 USP1 606589 sc-eQTL 4.02e-02 0.18 0.0871 0.399 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 848037 sc-eQTL 3.16e-01 0.0602 0.0599 0.399 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -550525 sc-eQTL 6.11e-01 0.0359 0.0705 0.401 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -324689 sc-eQTL 3.30e-02 0.18 0.0838 0.401 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 354500 sc-eQTL 6.03e-01 -0.0395 0.0759 0.401 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 258754 sc-eQTL 3.59e-01 -0.0695 0.0756 0.401 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -550835 sc-eQTL 1.42e-02 -0.219 0.0885 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 606589 sc-eQTL 5.22e-01 -0.0522 0.0814 0.401 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -480486 sc-eQTL 2.26e-01 0.12 0.0988 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 848037 eQTL 0.00686 -0.109 0.0402 0.0 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -324689 1.29e-06 9.2e-07 2.87e-07 9.69e-07 3.83e-07 5.63e-07 1.61e-06 4.35e-07 1.59e-06 6.24e-07 1.87e-06 8.15e-07 2.15e-06 2.96e-07 5.34e-07 9.97e-07 9.23e-07 8.82e-07 7.22e-07 5.75e-07 7.8e-07 1.8e-06 9.35e-07 5.65e-07 2.29e-06 7.8e-07 9.31e-07 7.45e-07 1.47e-06 1.29e-06 6.73e-07 2.89e-07 2.57e-07 5.87e-07 5.82e-07 5.08e-07 7.46e-07 2.39e-07 4.52e-07 2.96e-07 2.83e-07 1.46e-06 1.09e-07 4.19e-08 2.88e-07 1.23e-07 2.43e-07 4.85e-08 1.97e-07