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Genes within 1Mb (chr1:63041211:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552200 sc-eQTL 1.26e-01 -0.12 0.0782 0.397 B L1
ENSG00000088035 ALG6 -326364 sc-eQTL 3.18e-01 0.0814 0.0813 0.397 B L1
ENSG00000116641 DOCK7 352825 sc-eQTL 4.06e-01 -0.0676 0.0813 0.397 B L1
ENSG00000125703 ATG4C 257079 sc-eQTL 8.77e-01 -0.0088 0.0566 0.397 B L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.68e-01 -0.0387 0.0901 0.397 B L1
ENSG00000162607 USP1 604914 sc-eQTL 2.90e-02 -0.17 0.0773 0.397 B L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.18e-01 -0.114 0.092 0.397 B L1
ENSG00000079739 PGM1 -552200 sc-eQTL 7.77e-02 -0.119 0.0669 0.397 CD4T L1
ENSG00000088035 ALG6 -326364 sc-eQTL 5.72e-01 -0.042 0.0743 0.397 CD4T L1
ENSG00000116641 DOCK7 352825 sc-eQTL 5.58e-01 -0.0442 0.0752 0.397 CD4T L1
ENSG00000125703 ATG4C 257079 sc-eQTL 7.50e-01 -0.0194 0.0608 0.397 CD4T L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 3.46e-02 -0.182 0.0854 0.397 CD4T L1
ENSG00000162607 USP1 604914 sc-eQTL 8.02e-02 -0.103 0.0586 0.397 CD4T L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.10e-02 -0.166 0.0766 0.397 CD4T L1
ENSG00000079739 PGM1 -552200 sc-eQTL 3.21e-03 -0.218 0.0731 0.397 CD8T L1
ENSG00000088035 ALG6 -326364 sc-eQTL 2.16e-01 0.102 0.0819 0.397 CD8T L1
ENSG00000116641 DOCK7 352825 sc-eQTL 6.19e-01 -0.0415 0.0833 0.397 CD8T L1
ENSG00000125703 ATG4C 257079 sc-eQTL 7.97e-01 -0.0204 0.0791 0.397 CD8T L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.05e-01 -0.143 0.088 0.397 CD8T L1
ENSG00000162607 USP1 604914 sc-eQTL 5.09e-01 -0.0456 0.0689 0.397 CD8T L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.08e-01 -0.141 0.0877 0.397 CD8T L1
ENSG00000079739 PGM1 -552200 sc-eQTL 6.35e-01 -0.0406 0.0852 0.401 DC L1
ENSG00000088035 ALG6 -326364 sc-eQTL 8.90e-01 -0.0122 0.088 0.401 DC L1
ENSG00000116641 DOCK7 352825 sc-eQTL 7.43e-01 -0.0297 0.0902 0.401 DC L1
ENSG00000125703 ATG4C 257079 sc-eQTL 5.98e-01 0.0373 0.0705 0.401 DC L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 8.92e-01 -0.0134 0.0987 0.401 DC L1
ENSG00000162607 USP1 604914 sc-eQTL 8.19e-01 -0.0197 0.0861 0.401 DC L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.26e-01 0.104 0.0856 0.401 DC L1
ENSG00000079739 PGM1 -552200 sc-eQTL 6.80e-02 -0.149 0.0812 0.397 Mono L1
ENSG00000088035 ALG6 -326364 sc-eQTL 3.95e-01 -0.0727 0.0853 0.397 Mono L1
ENSG00000116641 DOCK7 352825 sc-eQTL 7.51e-01 -0.0262 0.0826 0.397 Mono L1
ENSG00000125703 ATG4C 257079 sc-eQTL 9.59e-01 -0.00285 0.0558 0.397 Mono L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.78e-01 -0.119 0.0879 0.397 Mono L1
ENSG00000162607 USP1 604914 sc-eQTL 2.99e-01 0.0752 0.0723 0.397 Mono L1
ENSG00000240563 L1TD1 846362 sc-eQTL 6.10e-01 0.0346 0.0676 0.397 Mono L1
ENSG00000079739 PGM1 -552200 sc-eQTL 8.91e-01 0.00954 0.0692 0.397 NK L1
ENSG00000088035 ALG6 -326364 sc-eQTL 6.07e-03 0.221 0.0797 0.397 NK L1
ENSG00000116641 DOCK7 352825 sc-eQTL 2.22e-01 -0.0815 0.0666 0.397 NK L1
ENSG00000125703 ATG4C 257079 sc-eQTL 3.01e-01 -0.0743 0.0716 0.397 NK L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.09e-02 -0.226 0.0879 0.397 NK L1
ENSG00000162607 USP1 604914 sc-eQTL 5.30e-01 -0.0501 0.0797 0.397 NK L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.42e-01 0.142 0.0964 0.397 NK L1
ENSG00000079739 PGM1 -552200 sc-eQTL 4.48e-01 -0.0606 0.0797 0.397 Other_T L1
ENSG00000088035 ALG6 -326364 sc-eQTL 2.25e-01 -0.0973 0.0799 0.397 Other_T L1
ENSG00000116641 DOCK7 352825 sc-eQTL 6.63e-01 0.0357 0.0818 0.397 Other_T L1
ENSG00000125703 ATG4C 257079 sc-eQTL 3.98e-02 -0.145 0.0702 0.397 Other_T L1
ENSG00000142856 ITGB3BP -552510 sc-eQTL 9.69e-01 0.00248 0.0628 0.397 Other_T L1
ENSG00000162607 USP1 604914 sc-eQTL 2.76e-01 0.0593 0.0543 0.397 Other_T L1
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.70e-01 0.107 0.0967 0.397 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552200 sc-eQTL 9.41e-02 -0.175 0.104 0.401 B_Activated L2
ENSG00000088035 ALG6 -326364 sc-eQTL 7.48e-01 -0.0323 0.1 0.401 B_Activated L2
ENSG00000116641 DOCK7 352825 sc-eQTL 3.41e-01 -0.089 0.0932 0.401 B_Activated L2
ENSG00000125703 ATG4C 257079 sc-eQTL 1.47e-01 0.142 0.0977 0.401 B_Activated L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.79e-01 0.0398 0.096 0.401 B_Activated L2
ENSG00000162607 USP1 604914 sc-eQTL 3.18e-01 -0.104 0.104 0.401 B_Activated L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.65e-01 -0.101 0.0906 0.401 B_Activated L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.10e-01 -0.118 0.0941 0.399 B_Intermediate L2
ENSG00000088035 ALG6 -326364 sc-eQTL 2.48e-01 0.111 0.0956 0.399 B_Intermediate L2
ENSG00000116641 DOCK7 352825 sc-eQTL 6.84e-01 -0.0374 0.0916 0.399 B_Intermediate L2
ENSG00000125703 ATG4C 257079 sc-eQTL 3.71e-01 -0.0694 0.0774 0.399 B_Intermediate L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 4.37e-01 -0.0719 0.0923 0.399 B_Intermediate L2
ENSG00000162607 USP1 604914 sc-eQTL 7.67e-01 -0.0273 0.0922 0.399 B_Intermediate L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.03e-02 0.197 0.0905 0.399 B_Intermediate L2
ENSG00000079739 PGM1 -552200 sc-eQTL 9.31e-01 -0.00805 0.0926 0.401 B_Memory L2
ENSG00000088035 ALG6 -326364 sc-eQTL 4.67e-01 0.0685 0.094 0.401 B_Memory L2
ENSG00000116641 DOCK7 352825 sc-eQTL 2.54e-01 0.101 0.088 0.401 B_Memory L2
ENSG00000125703 ATG4C 257079 sc-eQTL 1.90e-01 0.11 0.0836 0.401 B_Memory L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.83e-01 0.128 0.0956 0.401 B_Memory L2
ENSG00000162607 USP1 604914 sc-eQTL 1.24e-01 -0.149 0.0963 0.401 B_Memory L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.47e-01 0.0896 0.0951 0.401 B_Memory L2
ENSG00000079739 PGM1 -552200 sc-eQTL 7.14e-01 -0.0344 0.0938 0.397 B_Naive1 L2
ENSG00000088035 ALG6 -326364 sc-eQTL 9.59e-01 -0.00485 0.0942 0.397 B_Naive1 L2
ENSG00000116641 DOCK7 352825 sc-eQTL 8.64e-01 0.0155 0.0903 0.397 B_Naive1 L2
ENSG00000125703 ATG4C 257079 sc-eQTL 5.65e-01 0.0401 0.0695 0.397 B_Naive1 L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 3.74e-01 -0.0821 0.0921 0.397 B_Naive1 L2
ENSG00000162607 USP1 604914 sc-eQTL 1.15e-01 -0.128 0.0807 0.397 B_Naive1 L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.36e-02 -0.222 0.0973 0.397 B_Naive1 L2
ENSG00000079739 PGM1 -552200 sc-eQTL 1.92e-01 -0.122 0.093 0.399 B_Naive2 L2
ENSG00000088035 ALG6 -326364 sc-eQTL 4.61e-01 0.0718 0.0972 0.399 B_Naive2 L2
ENSG00000116641 DOCK7 352825 sc-eQTL 5.23e-01 -0.0599 0.0935 0.399 B_Naive2 L2
ENSG00000125703 ATG4C 257079 sc-eQTL 6.35e-01 -0.0428 0.0901 0.399 B_Naive2 L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 7.75e-02 0.172 0.097 0.399 B_Naive2 L2
ENSG00000162607 USP1 604914 sc-eQTL 5.03e-01 -0.0624 0.0929 0.399 B_Naive2 L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 7.24e-01 -0.0344 0.0972 0.399 B_Naive2 L2
ENSG00000079739 PGM1 -552200 sc-eQTL 3.80e-01 0.0832 0.0946 0.398 CD4_CTL L2
ENSG00000088035 ALG6 -326364 sc-eQTL 7.55e-01 -0.0313 0.1 0.398 CD4_CTL L2
ENSG00000116641 DOCK7 352825 sc-eQTL 7.70e-01 -0.0256 0.0876 0.398 CD4_CTL L2
ENSG00000125703 ATG4C 257079 sc-eQTL 3.88e-01 -0.0782 0.0905 0.398 CD4_CTL L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 9.52e-01 -0.00586 0.0969 0.398 CD4_CTL L2
ENSG00000162607 USP1 604914 sc-eQTL 6.84e-01 -0.0376 0.0922 0.398 CD4_CTL L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 9.36e-01 -0.00738 0.0921 0.398 CD4_CTL L2
ENSG00000079739 PGM1 -552200 sc-eQTL 8.50e-02 -0.13 0.075 0.397 CD4_Naive L2
ENSG00000088035 ALG6 -326364 sc-eQTL 5.23e-01 -0.0524 0.082 0.397 CD4_Naive L2
ENSG00000116641 DOCK7 352825 sc-eQTL 8.63e-01 -0.0139 0.0807 0.397 CD4_Naive L2
ENSG00000125703 ATG4C 257079 sc-eQTL 3.02e-01 0.0736 0.0711 0.397 CD4_Naive L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.11e-01 -0.138 0.0866 0.397 CD4_Naive L2
ENSG00000162607 USP1 604914 sc-eQTL 6.41e-02 -0.123 0.066 0.397 CD4_Naive L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.79e-02 -0.179 0.0856 0.397 CD4_Naive L2
ENSG00000079739 PGM1 -552200 sc-eQTL 1.37e-02 -0.193 0.0775 0.397 CD4_TCM L2
ENSG00000088035 ALG6 -326364 sc-eQTL 6.85e-01 -0.0371 0.0913 0.397 CD4_TCM L2
ENSG00000116641 DOCK7 352825 sc-eQTL 7.98e-01 0.0207 0.0809 0.397 CD4_TCM L2
ENSG00000125703 ATG4C 257079 sc-eQTL 2.91e-01 -0.0833 0.0786 0.397 CD4_TCM L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.93e-01 -0.121 0.0925 0.397 CD4_TCM L2
ENSG00000162607 USP1 604914 sc-eQTL 5.92e-01 -0.0409 0.0761 0.397 CD4_TCM L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.31e-01 -0.136 0.0894 0.397 CD4_TCM L2
ENSG00000079739 PGM1 -552200 sc-eQTL 3.60e-01 0.085 0.0927 0.397 CD4_TEM L2
ENSG00000088035 ALG6 -326364 sc-eQTL 5.48e-02 -0.179 0.0926 0.397 CD4_TEM L2
ENSG00000116641 DOCK7 352825 sc-eQTL 1.03e-01 -0.148 0.0905 0.397 CD4_TEM L2
ENSG00000125703 ATG4C 257079 sc-eQTL 4.98e-01 -0.0599 0.0883 0.397 CD4_TEM L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.24e-02 -0.227 0.0899 0.397 CD4_TEM L2
ENSG00000162607 USP1 604914 sc-eQTL 4.73e-02 -0.171 0.0857 0.397 CD4_TEM L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 9.77e-01 0.00272 0.0946 0.397 CD4_TEM L2
ENSG00000079739 PGM1 -552200 sc-eQTL 5.71e-02 -0.162 0.0849 0.397 CD8_CTL L2
ENSG00000088035 ALG6 -326364 sc-eQTL 7.95e-01 -0.0237 0.091 0.397 CD8_CTL L2
ENSG00000116641 DOCK7 352825 sc-eQTL 5.40e-01 -0.0529 0.0863 0.397 CD8_CTL L2
ENSG00000125703 ATG4C 257079 sc-eQTL 2.97e-01 -0.0959 0.0917 0.397 CD8_CTL L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 3.17e-01 -0.0957 0.0953 0.397 CD8_CTL L2
ENSG00000162607 USP1 604914 sc-eQTL 2.77e-01 -0.093 0.0854 0.397 CD8_CTL L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 4.88e-01 -0.068 0.0978 0.397 CD8_CTL L2
ENSG00000079739 PGM1 -552200 sc-eQTL 1.34e-03 -0.273 0.084 0.397 CD8_Naive L2
ENSG00000088035 ALG6 -326364 sc-eQTL 9.16e-01 -0.00946 0.0891 0.397 CD8_Naive L2
ENSG00000116641 DOCK7 352825 sc-eQTL 9.91e-02 -0.152 0.0915 0.397 CD8_Naive L2
ENSG00000125703 ATG4C 257079 sc-eQTL 1.00e-01 -0.145 0.0878 0.397 CD8_Naive L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 5.83e-02 -0.169 0.0888 0.397 CD8_Naive L2
ENSG00000162607 USP1 604914 sc-eQTL 5.08e-01 -0.0502 0.0756 0.397 CD8_Naive L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.27e-02 -0.191 0.0834 0.397 CD8_Naive L2
ENSG00000079739 PGM1 -552200 sc-eQTL 4.49e-01 0.0751 0.099 0.389 CD8_TCM L2
ENSG00000088035 ALG6 -326364 sc-eQTL 6.25e-01 0.0491 0.1 0.389 CD8_TCM L2
ENSG00000116641 DOCK7 352825 sc-eQTL 9.56e-01 -0.00539 0.098 0.389 CD8_TCM L2
ENSG00000125703 ATG4C 257079 sc-eQTL 1.39e-01 0.148 0.0996 0.389 CD8_TCM L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.66e-01 0.135 0.0969 0.389 CD8_TCM L2
ENSG00000162607 USP1 604914 sc-eQTL 1.56e-01 -0.133 0.0932 0.389 CD8_TCM L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 9.50e-01 0.00625 0.0992 0.389 CD8_TCM L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.92e-01 -0.101 0.0955 0.402 CD8_TEM L2
ENSG00000088035 ALG6 -326364 sc-eQTL 2.22e-01 0.117 0.0958 0.402 CD8_TEM L2
ENSG00000116641 DOCK7 352825 sc-eQTL 4.57e-01 0.0694 0.0931 0.402 CD8_TEM L2
ENSG00000125703 ATG4C 257079 sc-eQTL 8.69e-01 -0.0148 0.0896 0.402 CD8_TEM L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 3.59e-01 -0.089 0.0968 0.402 CD8_TEM L2
ENSG00000162607 USP1 604914 sc-eQTL 4.29e-01 0.0732 0.0924 0.402 CD8_TEM L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.80e-01 -0.126 0.0936 0.402 CD8_TEM L2
ENSG00000079739 PGM1 -552200 sc-eQTL 6.96e-01 0.0361 0.0922 0.396 MAIT L2
ENSG00000088035 ALG6 -326364 sc-eQTL 2.45e-02 -0.204 0.0902 0.396 MAIT L2
ENSG00000116641 DOCK7 352825 sc-eQTL 6.81e-01 -0.0359 0.0874 0.396 MAIT L2
ENSG00000125703 ATG4C 257079 sc-eQTL 9.58e-03 -0.237 0.0908 0.396 MAIT L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.92e-01 -0.0367 0.0924 0.396 MAIT L2
ENSG00000162607 USP1 604914 sc-eQTL 6.74e-01 -0.0386 0.0917 0.396 MAIT L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.68e-01 0.131 0.0947 0.396 MAIT L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.34e-01 -0.112 0.0935 0.398 NK_CD56bright L2
ENSG00000088035 ALG6 -326364 sc-eQTL 1.44e-01 0.14 0.0957 0.398 NK_CD56bright L2
ENSG00000116641 DOCK7 352825 sc-eQTL 7.56e-01 -0.0259 0.0833 0.398 NK_CD56bright L2
ENSG00000125703 ATG4C 257079 sc-eQTL 2.36e-01 -0.11 0.0928 0.398 NK_CD56bright L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.04e-01 0.0504 0.0969 0.398 NK_CD56bright L2
ENSG00000162607 USP1 604914 sc-eQTL 4.79e-01 0.0708 0.0998 0.398 NK_CD56bright L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 5.48e-02 0.183 0.0948 0.398 NK_CD56bright L2
ENSG00000079739 PGM1 -552200 sc-eQTL 8.09e-01 0.0174 0.0718 0.399 NK_CD56dim L2
ENSG00000088035 ALG6 -326364 sc-eQTL 1.68e-01 0.125 0.0908 0.399 NK_CD56dim L2
ENSG00000116641 DOCK7 352825 sc-eQTL 7.94e-01 0.0207 0.0793 0.399 NK_CD56dim L2
ENSG00000125703 ATG4C 257079 sc-eQTL 2.27e-01 0.0972 0.0803 0.399 NK_CD56dim L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.78e-02 -0.167 0.091 0.399 NK_CD56dim L2
ENSG00000162607 USP1 604914 sc-eQTL 3.70e-01 -0.0798 0.0888 0.399 NK_CD56dim L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.73e-01 0.109 0.0988 0.399 NK_CD56dim L2
ENSG00000079739 PGM1 -552200 sc-eQTL 8.14e-01 -0.0236 0.1 0.409 NK_HLA L2
ENSG00000088035 ALG6 -326364 sc-eQTL 9.49e-01 0.00666 0.104 0.409 NK_HLA L2
ENSG00000116641 DOCK7 352825 sc-eQTL 8.18e-01 0.0183 0.0794 0.409 NK_HLA L2
ENSG00000125703 ATG4C 257079 sc-eQTL 5.84e-01 -0.0506 0.0923 0.409 NK_HLA L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 2.90e-01 -0.103 0.0967 0.409 NK_HLA L2
ENSG00000162607 USP1 604914 sc-eQTL 8.77e-01 0.0157 0.101 0.409 NK_HLA L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.31e-01 0.139 0.0918 0.409 NK_HLA L2
ENSG00000079739 PGM1 -552200 sc-eQTL 7.96e-01 0.0208 0.0804 0.399 NK_cytokine L2
ENSG00000088035 ALG6 -326364 sc-eQTL 5.95e-02 0.171 0.0901 0.399 NK_cytokine L2
ENSG00000116641 DOCK7 352825 sc-eQTL 1.33e-01 -0.126 0.0837 0.399 NK_cytokine L2
ENSG00000125703 ATG4C 257079 sc-eQTL 9.03e-02 -0.145 0.0855 0.399 NK_cytokine L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 7.26e-03 -0.238 0.0876 0.399 NK_cytokine L2
ENSG00000162607 USP1 604914 sc-eQTL 8.40e-01 -0.019 0.0937 0.399 NK_cytokine L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 7.29e-01 0.0329 0.095 0.399 NK_cytokine L2
ENSG00000079739 PGM1 -552200 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -326364 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 352825 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 257079 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 604914 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.32e-01 -0.103 0.0862 0.396 Pro_T L2
ENSG00000088035 ALG6 -326364 sc-eQTL 9.08e-01 0.0102 0.088 0.396 Pro_T L2
ENSG00000116641 DOCK7 352825 sc-eQTL 9.94e-01 0.000713 0.0883 0.396 Pro_T L2
ENSG00000125703 ATG4C 257079 sc-eQTL 6.97e-01 -0.0302 0.0773 0.396 Pro_T L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 8.65e-01 0.0132 0.0775 0.396 Pro_T L2
ENSG00000162607 USP1 604914 sc-eQTL 4.04e-01 -0.0445 0.0532 0.396 Pro_T L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.14e-01 -0.142 0.0896 0.396 Pro_T L2
ENSG00000079739 PGM1 -552200 sc-eQTL 6.63e-02 -0.167 0.0905 0.397 Treg L2
ENSG00000088035 ALG6 -326364 sc-eQTL 5.83e-01 0.0535 0.0975 0.397 Treg L2
ENSG00000116641 DOCK7 352825 sc-eQTL 5.71e-01 -0.0508 0.0895 0.397 Treg L2
ENSG00000125703 ATG4C 257079 sc-eQTL 6.00e-01 -0.048 0.0914 0.397 Treg L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 3.22e-01 -0.0948 0.0955 0.397 Treg L2
ENSG00000162607 USP1 604914 sc-eQTL 2.35e-01 -0.11 0.0923 0.397 Treg L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.88e-01 0.0792 0.0914 0.397 Treg L2
ENSG00000079739 PGM1 -552200 sc-eQTL 5.75e-01 -0.0515 0.0918 0.4 cDC L2
ENSG00000088035 ALG6 -326364 sc-eQTL 1.35e-01 0.139 0.0926 0.4 cDC L2
ENSG00000116641 DOCK7 352825 sc-eQTL 2.36e-01 -0.108 0.0911 0.4 cDC L2
ENSG00000125703 ATG4C 257079 sc-eQTL 5.25e-01 -0.0506 0.0793 0.4 cDC L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 7.56e-01 -0.0313 0.101 0.4 cDC L2
ENSG00000162607 USP1 604914 sc-eQTL 7.07e-01 -0.0338 0.0896 0.4 cDC L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.37e-01 -0.12 0.0804 0.4 cDC L2
ENSG00000079739 PGM1 -552200 sc-eQTL 1.21e-01 -0.132 0.0847 0.397 cMono_IL1B L2
ENSG00000088035 ALG6 -326364 sc-eQTL 6.05e-01 -0.0441 0.0852 0.397 cMono_IL1B L2
ENSG00000116641 DOCK7 352825 sc-eQTL 9.71e-01 0.00331 0.0899 0.397 cMono_IL1B L2
ENSG00000125703 ATG4C 257079 sc-eQTL 4.30e-01 -0.0499 0.0631 0.397 cMono_IL1B L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.22e-01 -0.138 0.089 0.397 cMono_IL1B L2
ENSG00000162607 USP1 604914 sc-eQTL 7.52e-01 -0.0249 0.0789 0.397 cMono_IL1B L2
ENSG00000240563 L1TD1 846362 sc-eQTL 3.21e-01 0.0788 0.0791 0.397 cMono_IL1B L2
ENSG00000079739 PGM1 -552200 sc-eQTL 1.48e-01 -0.138 0.0953 0.397 cMono_S100A L2
ENSG00000088035 ALG6 -326364 sc-eQTL 1.77e-01 -0.131 0.0966 0.397 cMono_S100A L2
ENSG00000116641 DOCK7 352825 sc-eQTL 3.96e-01 -0.0765 0.0898 0.397 cMono_S100A L2
ENSG00000125703 ATG4C 257079 sc-eQTL 8.83e-01 0.0115 0.0779 0.397 cMono_S100A L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 7.28e-01 -0.0306 0.0878 0.397 cMono_S100A L2
ENSG00000162607 USP1 604914 sc-eQTL 5.46e-01 0.0547 0.0904 0.397 cMono_S100A L2
ENSG00000240563 L1TD1 846362 sc-eQTL 7.52e-01 -0.0238 0.0752 0.397 cMono_S100A L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -326364 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 352825 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 257079 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 604914 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -552200 sc-eQTL 2.42e-01 -0.113 0.0959 0.396 intMono L2
ENSG00000088035 ALG6 -326364 sc-eQTL 4.09e-01 0.074 0.0895 0.396 intMono L2
ENSG00000116641 DOCK7 352825 sc-eQTL 8.10e-01 0.022 0.0915 0.396 intMono L2
ENSG00000125703 ATG4C 257079 sc-eQTL 3.40e-02 0.185 0.0864 0.396 intMono L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 8.28e-01 0.0209 0.0963 0.396 intMono L2
ENSG00000162607 USP1 604914 sc-eQTL 3.15e-01 0.0984 0.0977 0.396 intMono L2
ENSG00000240563 L1TD1 846362 sc-eQTL 5.15e-01 0.0469 0.0719 0.396 intMono L2
ENSG00000079739 PGM1 -552200 sc-eQTL 8.64e-01 0.0151 0.0877 0.396 ncMono L2
ENSG00000088035 ALG6 -326364 sc-eQTL 8.94e-01 0.0128 0.0964 0.396 ncMono L2
ENSG00000116641 DOCK7 352825 sc-eQTL 3.85e-01 -0.0824 0.0947 0.396 ncMono L2
ENSG00000125703 ATG4C 257079 sc-eQTL 2.94e-01 0.0929 0.0884 0.396 ncMono L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 4.18e-01 -0.075 0.0926 0.396 ncMono L2
ENSG00000162607 USP1 604914 sc-eQTL 1.36e-01 0.141 0.0942 0.396 ncMono L2
ENSG00000240563 L1TD1 846362 sc-eQTL 5.71e-01 0.0381 0.0671 0.396 ncMono L2
ENSG00000079739 PGM1 -552200 sc-eQTL 4.07e-01 -0.0862 0.104 0.412 pDC L2
ENSG00000088035 ALG6 -326364 sc-eQTL 2.39e-01 -0.119 0.101 0.412 pDC L2
ENSG00000116641 DOCK7 352825 sc-eQTL 4.60e-01 0.0764 0.103 0.412 pDC L2
ENSG00000125703 ATG4C 257079 sc-eQTL 6.89e-01 0.0371 0.0926 0.412 pDC L2
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.20e-01 -0.0516 0.104 0.412 pDC L2
ENSG00000162607 USP1 604914 sc-eQTL 7.94e-01 -0.0277 0.106 0.412 pDC L2
ENSG00000203965 EFCAB7 -482161 sc-eQTL 4.67e-01 0.0669 0.0918 0.412 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552200 sc-eQTL 2.44e-01 -0.101 0.0869 0.397 B_Memory LOneK1K
ENSG00000088035 ALG6 -326364 sc-eQTL 1.43e-01 0.141 0.0959 0.397 B_Memory LOneK1K
ENSG00000116641 DOCK7 352825 sc-eQTL 8.82e-01 -0.0125 0.0836 0.397 B_Memory LOneK1K
ENSG00000125703 ATG4C 257079 sc-eQTL 8.10e-01 0.0163 0.0676 0.397 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -552510 sc-eQTL 6.21e-01 0.044 0.0888 0.397 B_Memory LOneK1K
ENSG00000162607 USP1 604914 sc-eQTL 1.38e-01 -0.128 0.0858 0.397 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.14e-01 0.0931 0.0924 0.397 B_Memory LOneK1K
ENSG00000079739 PGM1 -552200 sc-eQTL 3.37e-01 -0.0878 0.0912 0.397 B_Naive LOneK1K
ENSG00000088035 ALG6 -326364 sc-eQTL 7.96e-01 0.0243 0.0941 0.397 B_Naive LOneK1K
ENSG00000116641 DOCK7 352825 sc-eQTL 5.34e-01 -0.0547 0.0878 0.397 B_Naive LOneK1K
ENSG00000125703 ATG4C 257079 sc-eQTL 7.40e-01 0.0223 0.0671 0.397 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -552510 sc-eQTL 9.66e-01 -0.00409 0.0948 0.397 B_Naive LOneK1K
ENSG00000162607 USP1 604914 sc-eQTL 5.47e-02 -0.156 0.0808 0.397 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -482161 sc-eQTL 3.98e-02 -0.195 0.0944 0.397 B_Naive LOneK1K
ENSG00000079739 PGM1 -552200 sc-eQTL 6.21e-02 -0.163 0.0869 0.397 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -326364 sc-eQTL 3.68e-01 -0.0765 0.0847 0.397 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 352825 sc-eQTL 5.79e-01 -0.0475 0.0854 0.397 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 257079 sc-eQTL 4.19e-01 -0.0478 0.059 0.397 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -552510 sc-eQTL 1.85e-01 -0.116 0.087 0.397 CD14_Mono LOneK1K
ENSG00000162607 USP1 604914 sc-eQTL 5.72e-01 0.0422 0.0746 0.397 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 846362 sc-eQTL 9.58e-01 -0.00429 0.0809 0.397 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -552200 sc-eQTL 6.45e-01 -0.0387 0.0839 0.397 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -326364 sc-eQTL 6.26e-01 0.0465 0.0953 0.397 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 352825 sc-eQTL 7.23e-01 0.0334 0.0943 0.397 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 257079 sc-eQTL 3.52e-01 0.0749 0.0803 0.397 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -552510 sc-eQTL 5.15e-01 -0.0608 0.0933 0.397 CD16_Mono LOneK1K
ENSG00000162607 USP1 604914 sc-eQTL 6.70e-02 0.16 0.087 0.397 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 846362 sc-eQTL 3.11e-01 0.0606 0.0597 0.397 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -552200 sc-eQTL 6.91e-01 0.028 0.0704 0.399 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -326364 sc-eQTL 2.04e-02 0.195 0.0835 0.399 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 352825 sc-eQTL 5.64e-01 -0.0437 0.0757 0.399 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 257079 sc-eQTL 4.62e-01 -0.0557 0.0756 0.399 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -552510 sc-eQTL 8.57e-03 -0.234 0.0882 0.399 NK_CD56dim LOneK1K
ENSG00000162607 USP1 604914 sc-eQTL 5.63e-01 -0.0471 0.0813 0.399 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -482161 sc-eQTL 2.27e-01 0.12 0.0987 0.399 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 846362 eQTL 0.00686 -0.109 0.0402 0.0 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -326364 5.07e-06 3.6e-06 7.43e-07 2.02e-06 3.76e-07 8.08e-07 2.25e-06 2.84e-07 1.7e-06 7.22e-07 2.11e-06 9.12e-07 5.54e-06 1.47e-06 4.61e-07 2.11e-06 1.09e-06 2.31e-06 1.05e-06 6.26e-07 1.14e-06 3.17e-06 3.36e-06 8.48e-07 3.44e-06 9.6e-07 1.02e-06 1.45e-06 2.99e-06 2.11e-06 7.9e-07 4.1e-08 2.17e-07 1.36e-06 8.1e-07 8.84e-07 6.86e-07 2.47e-07 5.11e-07 3.08e-07 5.19e-08 3.16e-06 3.96e-07 5.68e-08 1.85e-07 4e-07 1.77e-07 2.38e-08 5.19e-08