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Genes within 1Mb (chr1:63041013:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552398 sc-eQTL 1.51e-01 -0.113 0.0784 0.4 B L1
ENSG00000088035 ALG6 -326562 sc-eQTL 2.73e-01 0.0894 0.0814 0.4 B L1
ENSG00000116641 DOCK7 352627 sc-eQTL 3.95e-01 -0.0694 0.0815 0.4 B L1
ENSG00000125703 ATG4C 256881 sc-eQTL 8.69e-01 -0.00938 0.0567 0.4 B L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.15e-01 -0.033 0.0902 0.4 B L1
ENSG00000162607 USP1 604716 sc-eQTL 1.59e-02 -0.188 0.0773 0.4 B L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.19e-01 -0.0922 0.0923 0.4 B L1
ENSG00000079739 PGM1 -552398 sc-eQTL 1.22e-01 -0.104 0.0671 0.4 CD4T L1
ENSG00000088035 ALG6 -326562 sc-eQTL 5.25e-01 -0.0474 0.0744 0.4 CD4T L1
ENSG00000116641 DOCK7 352627 sc-eQTL 5.02e-01 -0.0506 0.0753 0.4 CD4T L1
ENSG00000125703 ATG4C 256881 sc-eQTL 7.28e-01 -0.0212 0.0609 0.4 CD4T L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 4.92e-02 -0.169 0.0857 0.4 CD4T L1
ENSG00000162607 USP1 604716 sc-eQTL 8.19e-02 -0.103 0.0587 0.4 CD4T L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 4.18e-02 -0.157 0.0768 0.4 CD4T L1
ENSG00000079739 PGM1 -552398 sc-eQTL 4.89e-03 -0.209 0.0734 0.4 CD8T L1
ENSG00000088035 ALG6 -326562 sc-eQTL 1.80e-01 0.11 0.0821 0.4 CD8T L1
ENSG00000116641 DOCK7 352627 sc-eQTL 6.78e-01 -0.0347 0.0835 0.4 CD8T L1
ENSG00000125703 ATG4C 256881 sc-eQTL 6.89e-01 -0.0318 0.0793 0.4 CD8T L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.41e-01 -0.13 0.0882 0.4 CD8T L1
ENSG00000162607 USP1 604716 sc-eQTL 4.02e-01 -0.058 0.069 0.4 CD8T L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.36e-01 -0.132 0.0879 0.4 CD8T L1
ENSG00000079739 PGM1 -552398 sc-eQTL 5.66e-01 -0.0491 0.0854 0.403 DC L1
ENSG00000088035 ALG6 -326562 sc-eQTL 8.89e-01 -0.0123 0.0882 0.403 DC L1
ENSG00000116641 DOCK7 352627 sc-eQTL 6.31e-01 -0.0434 0.0904 0.403 DC L1
ENSG00000125703 ATG4C 256881 sc-eQTL 5.33e-01 0.0441 0.0707 0.403 DC L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 8.46e-01 -0.0192 0.0989 0.403 DC L1
ENSG00000162607 USP1 604716 sc-eQTL 8.55e-01 -0.0158 0.0863 0.403 DC L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.49e-01 0.0991 0.0858 0.403 DC L1
ENSG00000079739 PGM1 -552398 sc-eQTL 6.12e-02 -0.153 0.0814 0.4 Mono L1
ENSG00000088035 ALG6 -326562 sc-eQTL 4.72e-01 -0.0616 0.0855 0.4 Mono L1
ENSG00000116641 DOCK7 352627 sc-eQTL 7.22e-01 -0.0295 0.0828 0.4 Mono L1
ENSG00000125703 ATG4C 256881 sc-eQTL 9.59e-01 -0.00291 0.056 0.4 Mono L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.94e-01 -0.115 0.0881 0.4 Mono L1
ENSG00000162607 USP1 604716 sc-eQTL 2.62e-01 0.0815 0.0724 0.4 Mono L1
ENSG00000240563 L1TD1 846164 sc-eQTL 5.95e-01 0.0361 0.0678 0.4 Mono L1
ENSG00000079739 PGM1 -552398 sc-eQTL 8.27e-01 0.0152 0.0693 0.399 NK L1
ENSG00000088035 ALG6 -326562 sc-eQTL 1.09e-02 0.206 0.08 0.399 NK L1
ENSG00000116641 DOCK7 352627 sc-eQTL 2.85e-01 -0.0716 0.0668 0.399 NK L1
ENSG00000125703 ATG4C 256881 sc-eQTL 2.45e-01 -0.0835 0.0717 0.399 NK L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.70e-02 -0.212 0.0882 0.399 NK L1
ENSG00000162607 USP1 604716 sc-eQTL 5.19e-01 -0.0515 0.0798 0.399 NK L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.26e-01 0.148 0.0965 0.399 NK L1
ENSG00000079739 PGM1 -552398 sc-eQTL 6.23e-01 -0.0393 0.0798 0.4 Other_T L1
ENSG00000088035 ALG6 -326562 sc-eQTL 1.49e-01 -0.116 0.0798 0.4 Other_T L1
ENSG00000116641 DOCK7 352627 sc-eQTL 5.98e-01 0.0432 0.0819 0.4 Other_T L1
ENSG00000125703 ATG4C 256881 sc-eQTL 6.34e-02 -0.131 0.0703 0.4 Other_T L1
ENSG00000142856 ITGB3BP -552708 sc-eQTL 8.87e-01 0.00897 0.0629 0.4 Other_T L1
ENSG00000162607 USP1 604716 sc-eQTL 2.97e-01 0.0569 0.0544 0.4 Other_T L1
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.37e-01 0.115 0.0967 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552398 sc-eQTL 7.44e-02 -0.187 0.104 0.403 B_Activated L2
ENSG00000088035 ALG6 -326562 sc-eQTL 6.39e-01 -0.0473 0.101 0.403 B_Activated L2
ENSG00000116641 DOCK7 352627 sc-eQTL 3.63e-01 -0.0853 0.0935 0.403 B_Activated L2
ENSG00000125703 ATG4C 256881 sc-eQTL 1.92e-01 0.129 0.0981 0.403 B_Activated L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.69e-01 0.0284 0.0963 0.403 B_Activated L2
ENSG00000162607 USP1 604716 sc-eQTL 3.82e-01 -0.0913 0.104 0.403 B_Activated L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.77e-01 -0.0806 0.0909 0.403 B_Activated L2
ENSG00000079739 PGM1 -552398 sc-eQTL 2.15e-01 -0.117 0.0943 0.401 B_Intermediate L2
ENSG00000088035 ALG6 -326562 sc-eQTL 2.13e-01 0.12 0.0958 0.401 B_Intermediate L2
ENSG00000116641 DOCK7 352627 sc-eQTL 6.95e-01 -0.036 0.0918 0.401 B_Intermediate L2
ENSG00000125703 ATG4C 256881 sc-eQTL 4.13e-01 -0.0637 0.0776 0.401 B_Intermediate L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 4.94e-01 -0.0634 0.0925 0.401 B_Intermediate L2
ENSG00000162607 USP1 604716 sc-eQTL 6.51e-01 -0.0419 0.0924 0.401 B_Intermediate L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.34e-02 0.207 0.0906 0.401 B_Intermediate L2
ENSG00000079739 PGM1 -552398 sc-eQTL 9.91e-01 0.00106 0.0928 0.403 B_Memory L2
ENSG00000088035 ALG6 -326562 sc-eQTL 4.59e-01 0.07 0.0942 0.403 B_Memory L2
ENSG00000116641 DOCK7 352627 sc-eQTL 2.55e-01 0.101 0.0882 0.403 B_Memory L2
ENSG00000125703 ATG4C 256881 sc-eQTL 1.68e-01 0.116 0.0837 0.403 B_Memory L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 2.00e-01 0.123 0.0959 0.403 B_Memory L2
ENSG00000162607 USP1 604716 sc-eQTL 9.05e-02 -0.164 0.0964 0.403 B_Memory L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.32e-01 0.0927 0.0953 0.403 B_Memory L2
ENSG00000079739 PGM1 -552398 sc-eQTL 7.87e-01 -0.0255 0.0942 0.4 B_Naive1 L2
ENSG00000088035 ALG6 -326562 sc-eQTL 9.21e-01 -0.00943 0.0945 0.4 B_Naive1 L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.82e-01 0.00206 0.0906 0.4 B_Naive1 L2
ENSG00000125703 ATG4C 256881 sc-eQTL 5.64e-01 0.0403 0.0697 0.4 B_Naive1 L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 4.04e-01 -0.0774 0.0924 0.4 B_Naive1 L2
ENSG00000162607 USP1 604716 sc-eQTL 7.80e-02 -0.143 0.0808 0.4 B_Naive1 L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.90e-02 -0.203 0.0978 0.4 B_Naive1 L2
ENSG00000079739 PGM1 -552398 sc-eQTL 2.47e-01 -0.109 0.0934 0.401 B_Naive2 L2
ENSG00000088035 ALG6 -326562 sc-eQTL 3.75e-01 0.0867 0.0975 0.401 B_Naive2 L2
ENSG00000116641 DOCK7 352627 sc-eQTL 5.56e-01 -0.0554 0.0939 0.401 B_Naive2 L2
ENSG00000125703 ATG4C 256881 sc-eQTL 6.27e-01 -0.044 0.0904 0.401 B_Naive2 L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 6.76e-02 0.179 0.0973 0.401 B_Naive2 L2
ENSG00000162607 USP1 604716 sc-eQTL 4.60e-01 -0.069 0.0932 0.401 B_Naive2 L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 6.93e-01 -0.0386 0.0975 0.401 B_Naive2 L2
ENSG00000079739 PGM1 -552398 sc-eQTL 3.72e-01 0.0848 0.0948 0.4 CD4_CTL L2
ENSG00000088035 ALG6 -326562 sc-eQTL 7.68e-01 -0.0296 0.1 0.4 CD4_CTL L2
ENSG00000116641 DOCK7 352627 sc-eQTL 7.07e-01 -0.0331 0.0877 0.4 CD4_CTL L2
ENSG00000125703 ATG4C 256881 sc-eQTL 3.74e-01 -0.0807 0.0906 0.4 CD4_CTL L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 9.98e-01 -0.000208 0.0971 0.4 CD4_CTL L2
ENSG00000162607 USP1 604716 sc-eQTL 7.23e-01 -0.0327 0.0924 0.4 CD4_CTL L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 9.91e-01 -0.00109 0.0923 0.4 CD4_CTL L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.32e-01 -0.114 0.0753 0.4 CD4_Naive L2
ENSG00000088035 ALG6 -326562 sc-eQTL 4.59e-01 -0.061 0.0821 0.4 CD4_Naive L2
ENSG00000116641 DOCK7 352627 sc-eQTL 8.52e-01 -0.0151 0.0808 0.4 CD4_Naive L2
ENSG00000125703 ATG4C 256881 sc-eQTL 3.53e-01 0.0664 0.0713 0.4 CD4_Naive L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.44e-01 -0.128 0.0869 0.4 CD4_Naive L2
ENSG00000162607 USP1 604716 sc-eQTL 6.52e-02 -0.123 0.0662 0.4 CD4_Naive L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 4.37e-02 -0.174 0.0858 0.4 CD4_Naive L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.94e-02 -0.183 0.0778 0.4 CD4_TCM L2
ENSG00000088035 ALG6 -326562 sc-eQTL 6.57e-01 -0.0407 0.0915 0.4 CD4_TCM L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.09e-01 0.00926 0.0811 0.4 CD4_TCM L2
ENSG00000125703 ATG4C 256881 sc-eQTL 3.71e-01 -0.0706 0.0788 0.4 CD4_TCM L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 2.63e-01 -0.104 0.0928 0.4 CD4_TCM L2
ENSG00000162607 USP1 604716 sc-eQTL 5.28e-01 -0.0481 0.0762 0.4 CD4_TCM L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.38e-01 -0.133 0.0896 0.4 CD4_TCM L2
ENSG00000079739 PGM1 -552398 sc-eQTL 4.06e-01 0.0773 0.093 0.4 CD4_TEM L2
ENSG00000088035 ALG6 -326562 sc-eQTL 6.35e-02 -0.173 0.0928 0.4 CD4_TEM L2
ENSG00000116641 DOCK7 352627 sc-eQTL 1.33e-01 -0.137 0.0908 0.4 CD4_TEM L2
ENSG00000125703 ATG4C 256881 sc-eQTL 5.82e-01 -0.0488 0.0886 0.4 CD4_TEM L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.77e-02 -0.216 0.0903 0.4 CD4_TEM L2
ENSG00000162607 USP1 604716 sc-eQTL 4.09e-02 -0.176 0.0858 0.4 CD4_TEM L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 8.54e-01 0.0174 0.0948 0.4 CD4_TEM L2
ENSG00000079739 PGM1 -552398 sc-eQTL 6.59e-02 -0.157 0.0851 0.4 CD8_CTL L2
ENSG00000088035 ALG6 -326562 sc-eQTL 8.43e-01 -0.0181 0.0912 0.4 CD8_CTL L2
ENSG00000116641 DOCK7 352627 sc-eQTL 5.92e-01 -0.0464 0.0865 0.4 CD8_CTL L2
ENSG00000125703 ATG4C 256881 sc-eQTL 2.16e-01 -0.114 0.0918 0.4 CD8_CTL L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 3.59e-01 -0.0879 0.0956 0.4 CD8_CTL L2
ENSG00000162607 USP1 604716 sc-eQTL 2.48e-01 -0.099 0.0855 0.4 CD8_CTL L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 5.14e-01 -0.064 0.098 0.4 CD8_CTL L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.12e-03 -0.278 0.0841 0.4 CD8_Naive L2
ENSG00000088035 ALG6 -326562 sc-eQTL 9.36e-01 0.00721 0.0893 0.4 CD8_Naive L2
ENSG00000116641 DOCK7 352627 sc-eQTL 1.28e-01 -0.14 0.0918 0.4 CD8_Naive L2
ENSG00000125703 ATG4C 256881 sc-eQTL 9.83e-02 -0.146 0.088 0.4 CD8_Naive L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.55e-02 -0.159 0.0891 0.4 CD8_Naive L2
ENSG00000162607 USP1 604716 sc-eQTL 4.36e-01 -0.0592 0.0758 0.4 CD8_Naive L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.57e-02 -0.177 0.0837 0.4 CD8_Naive L2
ENSG00000079739 PGM1 -552398 sc-eQTL 3.68e-01 0.0896 0.0992 0.391 CD8_TCM L2
ENSG00000088035 ALG6 -326562 sc-eQTL 4.92e-01 0.0693 0.101 0.391 CD8_TCM L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.40e-01 0.00738 0.0983 0.391 CD8_TCM L2
ENSG00000125703 ATG4C 256881 sc-eQTL 1.61e-01 0.141 0.1 0.391 CD8_TCM L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.12e-01 0.155 0.097 0.391 CD8_TCM L2
ENSG00000162607 USP1 604716 sc-eQTL 1.07e-01 -0.151 0.0933 0.391 CD8_TCM L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 9.12e-01 -0.0111 0.0995 0.391 CD8_TCM L2
ENSG00000079739 PGM1 -552398 sc-eQTL 3.45e-01 -0.0908 0.0959 0.404 CD8_TEM L2
ENSG00000088035 ALG6 -326562 sc-eQTL 2.84e-01 0.103 0.0962 0.404 CD8_TEM L2
ENSG00000116641 DOCK7 352627 sc-eQTL 4.91e-01 0.0645 0.0934 0.404 CD8_TEM L2
ENSG00000125703 ATG4C 256881 sc-eQTL 8.61e-01 -0.0158 0.0899 0.404 CD8_TEM L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 3.60e-01 -0.089 0.0971 0.404 CD8_TEM L2
ENSG00000162607 USP1 604716 sc-eQTL 4.80e-01 0.0656 0.0927 0.404 CD8_TEM L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.07e-01 -0.119 0.094 0.404 CD8_TEM L2
ENSG00000079739 PGM1 -552398 sc-eQTL 5.46e-01 0.0559 0.0923 0.398 MAIT L2
ENSG00000088035 ALG6 -326562 sc-eQTL 1.20e-02 -0.228 0.0901 0.398 MAIT L2
ENSG00000116641 DOCK7 352627 sc-eQTL 7.89e-01 -0.0235 0.0876 0.398 MAIT L2
ENSG00000125703 ATG4C 256881 sc-eQTL 1.28e-02 -0.229 0.091 0.398 MAIT L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 6.75e-01 -0.0389 0.0925 0.398 MAIT L2
ENSG00000162607 USP1 604716 sc-eQTL 5.54e-01 -0.0544 0.0918 0.398 MAIT L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.30e-01 0.144 0.0948 0.398 MAIT L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.99e-01 -0.121 0.0938 0.4 NK_CD56bright L2
ENSG00000088035 ALG6 -326562 sc-eQTL 1.81e-01 0.129 0.0962 0.4 NK_CD56bright L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.49e-01 -0.00532 0.0837 0.4 NK_CD56bright L2
ENSG00000125703 ATG4C 256881 sc-eQTL 2.82e-01 -0.101 0.0932 0.4 NK_CD56bright L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 6.22e-01 0.048 0.0973 0.4 NK_CD56bright L2
ENSG00000162607 USP1 604716 sc-eQTL 4.21e-01 0.0808 0.1 0.4 NK_CD56bright L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.77e-02 0.199 0.095 0.4 NK_CD56bright L2
ENSG00000079739 PGM1 -552398 sc-eQTL 7.30e-01 0.0249 0.072 0.401 NK_CD56dim L2
ENSG00000088035 ALG6 -326562 sc-eQTL 2.38e-01 0.108 0.0911 0.401 NK_CD56dim L2
ENSG00000116641 DOCK7 352627 sc-eQTL 8.60e-01 0.014 0.0795 0.401 NK_CD56dim L2
ENSG00000125703 ATG4C 256881 sc-eQTL 2.82e-01 0.087 0.0806 0.401 NK_CD56dim L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.02e-01 -0.15 0.0913 0.401 NK_CD56dim L2
ENSG00000162607 USP1 604716 sc-eQTL 3.48e-01 -0.0837 0.089 0.401 NK_CD56dim L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 3.04e-01 0.102 0.0991 0.401 NK_CD56dim L2
ENSG00000079739 PGM1 -552398 sc-eQTL 8.92e-01 -0.0136 0.1 0.411 NK_HLA L2
ENSG00000088035 ALG6 -326562 sc-eQTL 9.13e-01 -0.0114 0.104 0.411 NK_HLA L2
ENSG00000116641 DOCK7 352627 sc-eQTL 6.62e-01 0.0348 0.0794 0.411 NK_HLA L2
ENSG00000125703 ATG4C 256881 sc-eQTL 5.47e-01 -0.0557 0.0923 0.411 NK_HLA L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 3.37e-01 -0.0932 0.0968 0.411 NK_HLA L2
ENSG00000162607 USP1 604716 sc-eQTL 8.82e-01 0.0151 0.102 0.411 NK_HLA L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.22e-01 0.143 0.0919 0.411 NK_HLA L2
ENSG00000079739 PGM1 -552398 sc-eQTL 7.25e-01 0.0283 0.0804 0.401 NK_cytokine L2
ENSG00000088035 ALG6 -326562 sc-eQTL 4.51e-02 0.182 0.0901 0.401 NK_cytokine L2
ENSG00000116641 DOCK7 352627 sc-eQTL 1.62e-01 -0.118 0.0839 0.401 NK_cytokine L2
ENSG00000125703 ATG4C 256881 sc-eQTL 6.17e-02 -0.161 0.0855 0.401 NK_cytokine L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 9.86e-03 -0.229 0.0878 0.401 NK_cytokine L2
ENSG00000162607 USP1 604716 sc-eQTL 7.09e-01 -0.0351 0.0938 0.401 NK_cytokine L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 6.56e-01 0.0424 0.0951 0.401 NK_cytokine L2
ENSG00000079739 PGM1 -552398 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -326562 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 352627 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 256881 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 604716 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -552398 sc-eQTL 2.37e-01 -0.102 0.0861 0.398 Pro_T L2
ENSG00000088035 ALG6 -326562 sc-eQTL 9.12e-01 0.00973 0.0879 0.398 Pro_T L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.71e-01 0.00321 0.0882 0.398 Pro_T L2
ENSG00000125703 ATG4C 256881 sc-eQTL 6.76e-01 -0.0324 0.0772 0.398 Pro_T L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 8.01e-01 0.0195 0.0774 0.398 Pro_T L2
ENSG00000162607 USP1 604716 sc-eQTL 4.04e-01 -0.0444 0.0532 0.398 Pro_T L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.21e-01 -0.139 0.0895 0.398 Pro_T L2
ENSG00000079739 PGM1 -552398 sc-eQTL 8.47e-02 -0.157 0.0907 0.4 Treg L2
ENSG00000088035 ALG6 -326562 sc-eQTL 5.12e-01 0.0641 0.0975 0.4 Treg L2
ENSG00000116641 DOCK7 352627 sc-eQTL 5.42e-01 -0.0546 0.0896 0.4 Treg L2
ENSG00000125703 ATG4C 256881 sc-eQTL 6.00e-01 -0.0481 0.0915 0.4 Treg L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 3.34e-01 -0.0927 0.0956 0.4 Treg L2
ENSG00000162607 USP1 604716 sc-eQTL 2.17e-01 -0.114 0.0924 0.4 Treg L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.91e-01 0.0968 0.0914 0.4 Treg L2
ENSG00000079739 PGM1 -552398 sc-eQTL 5.73e-01 -0.0519 0.0921 0.402 cDC L2
ENSG00000088035 ALG6 -326562 sc-eQTL 1.20e-01 0.145 0.0928 0.402 cDC L2
ENSG00000116641 DOCK7 352627 sc-eQTL 1.83e-01 -0.122 0.0913 0.402 cDC L2
ENSG00000125703 ATG4C 256881 sc-eQTL 6.41e-01 -0.0372 0.0796 0.402 cDC L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.05e-01 -0.0383 0.101 0.402 cDC L2
ENSG00000162607 USP1 604716 sc-eQTL 7.58e-01 -0.0277 0.0898 0.402 cDC L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.26e-01 -0.124 0.0806 0.402 cDC L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.36e-01 -0.127 0.0849 0.4 cMono_IL1B L2
ENSG00000088035 ALG6 -326562 sc-eQTL 6.87e-01 -0.0345 0.0854 0.4 cMono_IL1B L2
ENSG00000116641 DOCK7 352627 sc-eQTL 9.34e-01 -0.00742 0.0901 0.4 cMono_IL1B L2
ENSG00000125703 ATG4C 256881 sc-eQTL 4.39e-01 -0.049 0.0632 0.4 cMono_IL1B L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.24e-01 -0.138 0.0892 0.4 cMono_IL1B L2
ENSG00000162607 USP1 604716 sc-eQTL 6.97e-01 -0.0309 0.0791 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 846164 sc-eQTL 3.44e-01 0.0752 0.0793 0.4 cMono_IL1B L2
ENSG00000079739 PGM1 -552398 sc-eQTL 1.21e-01 -0.148 0.0954 0.4 cMono_S100A L2
ENSG00000088035 ALG6 -326562 sc-eQTL 2.37e-01 -0.115 0.0969 0.4 cMono_S100A L2
ENSG00000116641 DOCK7 352627 sc-eQTL 4.07e-01 -0.0748 0.09 0.4 cMono_S100A L2
ENSG00000125703 ATG4C 256881 sc-eQTL 8.60e-01 0.0138 0.078 0.4 cMono_S100A L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 8.19e-01 -0.0202 0.088 0.4 cMono_S100A L2
ENSG00000162607 USP1 604716 sc-eQTL 5.17e-01 0.0587 0.0905 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 846164 sc-eQTL 8.71e-01 -0.0122 0.0754 0.4 cMono_S100A L2
ENSG00000079739 PGM1 -552398 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -326562 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 352627 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 256881 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 604716 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -552398 sc-eQTL 2.01e-01 -0.123 0.0961 0.398 intMono L2
ENSG00000088035 ALG6 -326562 sc-eQTL 4.37e-01 0.0698 0.0897 0.398 intMono L2
ENSG00000116641 DOCK7 352627 sc-eQTL 7.06e-01 0.0346 0.0917 0.398 intMono L2
ENSG00000125703 ATG4C 256881 sc-eQTL 4.27e-02 0.177 0.0867 0.398 intMono L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 7.99e-01 0.0247 0.0965 0.398 intMono L2
ENSG00000162607 USP1 604716 sc-eQTL 2.21e-01 0.12 0.0978 0.398 intMono L2
ENSG00000240563 L1TD1 846164 sc-eQTL 5.50e-01 0.0432 0.0721 0.398 intMono L2
ENSG00000079739 PGM1 -552398 sc-eQTL 8.89e-01 0.0122 0.0879 0.398 ncMono L2
ENSG00000088035 ALG6 -326562 sc-eQTL 9.00e-01 0.0121 0.0965 0.398 ncMono L2
ENSG00000116641 DOCK7 352627 sc-eQTL 4.55e-01 -0.0711 0.0949 0.398 ncMono L2
ENSG00000125703 ATG4C 256881 sc-eQTL 3.61e-01 0.0811 0.0886 0.398 ncMono L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 3.61e-01 -0.0848 0.0926 0.398 ncMono L2
ENSG00000162607 USP1 604716 sc-eQTL 1.03e-01 0.154 0.0942 0.398 ncMono L2
ENSG00000240563 L1TD1 846164 sc-eQTL 5.68e-01 0.0384 0.0672 0.398 ncMono L2
ENSG00000079739 PGM1 -552398 sc-eQTL 3.64e-01 -0.0945 0.104 0.415 pDC L2
ENSG00000088035 ALG6 -326562 sc-eQTL 2.33e-01 -0.121 0.101 0.415 pDC L2
ENSG00000116641 DOCK7 352627 sc-eQTL 4.86e-01 0.0723 0.103 0.415 pDC L2
ENSG00000125703 ATG4C 256881 sc-eQTL 7.48e-01 0.0299 0.0929 0.415 pDC L2
ENSG00000142856 ITGB3BP -552708 sc-eQTL 5.85e-01 -0.057 0.104 0.415 pDC L2
ENSG00000162607 USP1 604716 sc-eQTL 8.19e-01 -0.0244 0.106 0.415 pDC L2
ENSG00000203965 EFCAB7 -482359 sc-eQTL 4.88e-01 0.0641 0.0921 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552398 sc-eQTL 2.56e-01 -0.0992 0.087 0.4 B_Memory LOneK1K
ENSG00000088035 ALG6 -326562 sc-eQTL 1.24e-01 0.148 0.096 0.4 B_Memory LOneK1K
ENSG00000116641 DOCK7 352627 sc-eQTL 8.77e-01 -0.013 0.0838 0.4 B_Memory LOneK1K
ENSG00000125703 ATG4C 256881 sc-eQTL 7.73e-01 0.0195 0.0677 0.4 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -552708 sc-eQTL 6.13e-01 0.045 0.0889 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 604716 sc-eQTL 9.58e-02 -0.144 0.0858 0.4 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.57e-01 0.105 0.0925 0.4 B_Memory LOneK1K
ENSG00000079739 PGM1 -552398 sc-eQTL 4.05e-01 -0.0763 0.0916 0.4 B_Naive LOneK1K
ENSG00000088035 ALG6 -326562 sc-eQTL 7.68e-01 0.0279 0.0944 0.4 B_Naive LOneK1K
ENSG00000116641 DOCK7 352627 sc-eQTL 4.76e-01 -0.0629 0.0881 0.4 B_Naive LOneK1K
ENSG00000125703 ATG4C 256881 sc-eQTL 7.64e-01 0.0202 0.0673 0.4 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -552708 sc-eQTL 9.60e-01 0.00479 0.0951 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 604716 sc-eQTL 3.51e-02 -0.172 0.0809 0.4 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -482359 sc-eQTL 6.13e-02 -0.178 0.0948 0.4 B_Naive LOneK1K
ENSG00000079739 PGM1 -552398 sc-eQTL 5.94e-02 -0.165 0.0871 0.4 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -326562 sc-eQTL 4.70e-01 -0.0615 0.085 0.4 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 352627 sc-eQTL 5.13e-01 -0.0561 0.0856 0.4 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 256881 sc-eQTL 4.39e-01 -0.0459 0.0591 0.4 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -552708 sc-eQTL 2.10e-01 -0.11 0.0873 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 604716 sc-eQTL 5.90e-01 0.0404 0.0748 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 846164 sc-eQTL 9.94e-01 0.000649 0.0811 0.4 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -552398 sc-eQTL 5.80e-01 -0.0466 0.0841 0.399 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -326562 sc-eQTL 6.51e-01 0.0432 0.0955 0.399 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 352627 sc-eQTL 6.07e-01 0.0487 0.0945 0.399 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 256881 sc-eQTL 4.52e-01 0.0607 0.0805 0.399 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -552708 sc-eQTL 4.66e-01 -0.0683 0.0935 0.399 CD16_Mono LOneK1K
ENSG00000162607 USP1 604716 sc-eQTL 4.02e-02 0.18 0.0871 0.399 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 846164 sc-eQTL 3.16e-01 0.0602 0.0599 0.399 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -552398 sc-eQTL 6.11e-01 0.0359 0.0705 0.401 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -326562 sc-eQTL 3.30e-02 0.18 0.0838 0.401 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 352627 sc-eQTL 6.03e-01 -0.0395 0.0759 0.401 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 256881 sc-eQTL 3.59e-01 -0.0695 0.0756 0.401 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -552708 sc-eQTL 1.42e-02 -0.219 0.0885 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 604716 sc-eQTL 5.22e-01 -0.0522 0.0814 0.401 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -482359 sc-eQTL 2.26e-01 0.12 0.0988 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 846164 eQTL 0.00687 -0.109 0.0402 0.0 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -326562 1.28e-06 9.34e-07 3.21e-07 5.17e-07 3.23e-07 4.46e-07 1.1e-06 3.65e-07 1.2e-06 4.15e-07 1.35e-06 6.03e-07 1.65e-06 2.67e-07 4.55e-07 8.27e-07 7.93e-07 5.55e-07 6.68e-07 6.8e-07 5.61e-07 1.2e-06 8.1e-07 6.42e-07 1.86e-06 3.87e-07 7.61e-07 6.83e-07 1.11e-06 1.11e-06 5.39e-07 1.9e-07 2.02e-07 5.6e-07 4.49e-07 4.59e-07 4.77e-07 2.38e-07 3.2e-07 1.54e-07 2.71e-07 1.3e-06 8.26e-08 4.13e-08 1.45e-07 1.22e-07 2.28e-07 3.7e-08 1.7e-07