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Genes within 1Mb (chr1:63040945:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552466 sc-eQTL 1.07e-01 -0.126 0.0779 0.378 B L1
ENSG00000088035 ALG6 -326630 sc-eQTL 2.93e-01 0.0854 0.0811 0.378 B L1
ENSG00000116641 DOCK7 352559 sc-eQTL 5.82e-01 -0.0448 0.0812 0.378 B L1
ENSG00000125703 ATG4C 256813 sc-eQTL 5.36e-01 -0.0349 0.0564 0.378 B L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 2.97e-01 -0.0938 0.0897 0.378 B L1
ENSG00000162607 USP1 604648 sc-eQTL 2.36e-02 -0.176 0.0771 0.378 B L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.10e-01 -0.115 0.0917 0.378 B L1
ENSG00000079739 PGM1 -552466 sc-eQTL 1.20e-01 -0.104 0.0663 0.378 CD4T L1
ENSG00000088035 ALG6 -326630 sc-eQTL 7.17e-01 -0.0268 0.0736 0.378 CD4T L1
ENSG00000116641 DOCK7 352559 sc-eQTL 7.58e-01 -0.023 0.0745 0.378 CD4T L1
ENSG00000125703 ATG4C 256813 sc-eQTL 6.54e-01 0.027 0.0601 0.378 CD4T L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.06e-02 -0.174 0.0846 0.378 CD4T L1
ENSG00000162607 USP1 604648 sc-eQTL 1.33e-01 -0.0876 0.0581 0.378 CD4T L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.26e-02 -0.174 0.0757 0.378 CD4T L1
ENSG00000079739 PGM1 -552466 sc-eQTL 7.28e-03 -0.197 0.0727 0.378 CD8T L1
ENSG00000088035 ALG6 -326630 sc-eQTL 2.68e-01 0.0902 0.0813 0.378 CD8T L1
ENSG00000116641 DOCK7 352559 sc-eQTL 4.63e-01 -0.0607 0.0825 0.378 CD8T L1
ENSG00000125703 ATG4C 256813 sc-eQTL 9.59e-01 0.00403 0.0785 0.378 CD8T L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.53e-01 -0.125 0.0873 0.378 CD8T L1
ENSG00000162607 USP1 604648 sc-eQTL 5.20e-01 -0.044 0.0683 0.378 CD8T L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 9.89e-02 -0.144 0.0869 0.378 CD8T L1
ENSG00000079739 PGM1 -552466 sc-eQTL 9.88e-01 -0.00127 0.0846 0.383 DC L1
ENSG00000088035 ALG6 -326630 sc-eQTL 7.07e-01 -0.0329 0.0873 0.383 DC L1
ENSG00000116641 DOCK7 352559 sc-eQTL 8.07e-01 -0.0218 0.0895 0.383 DC L1
ENSG00000125703 ATG4C 256813 sc-eQTL 6.27e-01 0.0341 0.07 0.383 DC L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 9.76e-01 0.00291 0.0979 0.383 DC L1
ENSG00000162607 USP1 604648 sc-eQTL 8.55e-01 -0.0156 0.0855 0.383 DC L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.59e-01 0.0782 0.085 0.383 DC L1
ENSG00000079739 PGM1 -552466 sc-eQTL 4.30e-02 -0.165 0.0808 0.378 Mono L1
ENSG00000088035 ALG6 -326630 sc-eQTL 7.22e-01 -0.0304 0.0851 0.378 Mono L1
ENSG00000116641 DOCK7 352559 sc-eQTL 9.47e-01 -0.00546 0.0824 0.378 Mono L1
ENSG00000125703 ATG4C 256813 sc-eQTL 8.28e-01 -0.0121 0.0556 0.378 Mono L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.16e-01 -0.138 0.0874 0.378 Mono L1
ENSG00000162607 USP1 604648 sc-eQTL 2.56e-01 0.082 0.072 0.378 Mono L1
ENSG00000240563 L1TD1 846096 sc-eQTL 7.02e-01 0.0258 0.0674 0.378 Mono L1
ENSG00000079739 PGM1 -552466 sc-eQTL 8.55e-01 -0.0125 0.0683 0.378 NK L1
ENSG00000088035 ALG6 -326630 sc-eQTL 2.00e-02 0.185 0.0791 0.378 NK L1
ENSG00000116641 DOCK7 352559 sc-eQTL 4.29e-01 -0.0522 0.0659 0.378 NK L1
ENSG00000125703 ATG4C 256813 sc-eQTL 1.64e-01 -0.0985 0.0705 0.378 NK L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.32e-02 -0.177 0.0872 0.378 NK L1
ENSG00000162607 USP1 604648 sc-eQTL 5.25e-01 -0.05 0.0786 0.378 NK L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.84e-01 0.0833 0.0954 0.378 NK L1
ENSG00000079739 PGM1 -552466 sc-eQTL 5.57e-01 -0.0462 0.0785 0.378 Other_T L1
ENSG00000088035 ALG6 -326630 sc-eQTL 4.49e-02 -0.158 0.0782 0.378 Other_T L1
ENSG00000116641 DOCK7 352559 sc-eQTL 6.49e-01 0.0368 0.0806 0.378 Other_T L1
ENSG00000125703 ATG4C 256813 sc-eQTL 2.82e-02 -0.152 0.069 0.378 Other_T L1
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.17e-01 0.031 0.0619 0.378 Other_T L1
ENSG00000162607 USP1 604648 sc-eQTL 5.05e-01 0.0358 0.0536 0.378 Other_T L1
ENSG00000203965 EFCAB7 -482427 sc-eQTL 4.95e-01 0.0652 0.0954 0.378 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552466 sc-eQTL 4.79e-02 -0.206 0.103 0.383 B_Activated L2
ENSG00000088035 ALG6 -326630 sc-eQTL 6.00e-01 -0.0525 0.0999 0.383 B_Activated L2
ENSG00000116641 DOCK7 352559 sc-eQTL 4.02e-01 -0.0781 0.0929 0.383 B_Activated L2
ENSG00000125703 ATG4C 256813 sc-eQTL 1.09e-01 0.157 0.0972 0.383 B_Activated L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 8.86e-01 0.0137 0.0957 0.383 B_Activated L2
ENSG00000162607 USP1 604648 sc-eQTL 2.79e-01 -0.112 0.103 0.383 B_Activated L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.70e-01 -0.0813 0.0904 0.383 B_Activated L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.90e-01 -0.0988 0.0931 0.38 B_Intermediate L2
ENSG00000088035 ALG6 -326630 sc-eQTL 3.43e-01 0.0899 0.0946 0.38 B_Intermediate L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.77e-01 -0.0377 0.0905 0.38 B_Intermediate L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.97e-01 -0.0649 0.0765 0.38 B_Intermediate L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.89e-01 -0.12 0.091 0.38 B_Intermediate L2
ENSG00000162607 USP1 604648 sc-eQTL 5.23e-01 -0.0583 0.0911 0.38 B_Intermediate L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 9.64e-02 0.15 0.0899 0.38 B_Intermediate L2
ENSG00000079739 PGM1 -552466 sc-eQTL 8.40e-01 -0.0185 0.0919 0.381 B_Memory L2
ENSG00000088035 ALG6 -326630 sc-eQTL 6.54e-01 0.0419 0.0934 0.381 B_Memory L2
ENSG00000116641 DOCK7 352559 sc-eQTL 3.31e-01 0.0853 0.0875 0.381 B_Memory L2
ENSG00000125703 ATG4C 256813 sc-eQTL 4.01e-02 0.17 0.0825 0.381 B_Memory L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.25e-01 0.0761 0.0952 0.381 B_Memory L2
ENSG00000162607 USP1 604648 sc-eQTL 1.34e-01 -0.144 0.0957 0.381 B_Memory L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.11e-01 0.096 0.0944 0.381 B_Memory L2
ENSG00000079739 PGM1 -552466 sc-eQTL 6.61e-01 -0.041 0.0935 0.378 B_Naive1 L2
ENSG00000088035 ALG6 -326630 sc-eQTL 8.30e-01 -0.0202 0.0939 0.378 B_Naive1 L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.88e-01 0.0127 0.09 0.378 B_Naive1 L2
ENSG00000125703 ATG4C 256813 sc-eQTL 9.00e-01 0.00871 0.0693 0.378 B_Naive1 L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.83e-01 -0.122 0.0916 0.378 B_Naive1 L2
ENSG00000162607 USP1 604648 sc-eQTL 1.02e-01 -0.132 0.0803 0.378 B_Naive1 L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.25e-02 -0.223 0.0969 0.378 B_Naive1 L2
ENSG00000079739 PGM1 -552466 sc-eQTL 1.95e-01 -0.121 0.0931 0.38 B_Naive2 L2
ENSG00000088035 ALG6 -326630 sc-eQTL 2.85e-01 0.104 0.0971 0.38 B_Naive2 L2
ENSG00000116641 DOCK7 352559 sc-eQTL 9.88e-01 -0.0014 0.0937 0.38 B_Naive2 L2
ENSG00000125703 ATG4C 256813 sc-eQTL 4.15e-01 -0.0735 0.09 0.38 B_Naive2 L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.38e-01 0.145 0.0973 0.38 B_Naive2 L2
ENSG00000162607 USP1 604648 sc-eQTL 4.79e-01 -0.066 0.093 0.38 B_Naive2 L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 8.50e-01 0.0184 0.0973 0.38 B_Naive2 L2
ENSG00000079739 PGM1 -552466 sc-eQTL 3.52e-01 0.0866 0.0928 0.38 CD4_CTL L2
ENSG00000088035 ALG6 -326630 sc-eQTL 4.55e-01 -0.0735 0.0982 0.38 CD4_CTL L2
ENSG00000116641 DOCK7 352559 sc-eQTL 7.85e-01 -0.0234 0.086 0.38 CD4_CTL L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.93e-01 -0.076 0.0888 0.38 CD4_CTL L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 8.07e-01 0.0232 0.0951 0.38 CD4_CTL L2
ENSG00000162607 USP1 604648 sc-eQTL 7.02e-01 -0.0347 0.0905 0.38 CD4_CTL L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 6.97e-01 0.0353 0.0904 0.38 CD4_CTL L2
ENSG00000079739 PGM1 -552466 sc-eQTL 1.47e-01 -0.108 0.0743 0.378 CD4_Naive L2
ENSG00000088035 ALG6 -326630 sc-eQTL 7.26e-01 -0.0285 0.0811 0.378 CD4_Naive L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.84e-01 0.0116 0.0797 0.378 CD4_Naive L2
ENSG00000125703 ATG4C 256813 sc-eQTL 7.96e-02 0.123 0.07 0.378 CD4_Naive L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 1.06e-01 -0.139 0.0856 0.378 CD4_Naive L2
ENSG00000162607 USP1 604648 sc-eQTL 1.31e-01 -0.0992 0.0654 0.378 CD4_Naive L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.32e-02 -0.193 0.0845 0.378 CD4_Naive L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.02e-02 -0.179 0.0766 0.378 CD4_TCM L2
ENSG00000088035 ALG6 -326630 sc-eQTL 5.94e-01 -0.0481 0.0901 0.378 CD4_TCM L2
ENSG00000116641 DOCK7 352559 sc-eQTL 5.80e-01 0.0442 0.0798 0.378 CD4_TCM L2
ENSG00000125703 ATG4C 256813 sc-eQTL 5.22e-01 -0.0499 0.0777 0.378 CD4_TCM L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 2.04e-01 -0.116 0.0913 0.378 CD4_TCM L2
ENSG00000162607 USP1 604648 sc-eQTL 5.66e-01 -0.0432 0.0751 0.378 CD4_TCM L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.34e-01 -0.106 0.0884 0.378 CD4_TCM L2
ENSG00000079739 PGM1 -552466 sc-eQTL 6.71e-01 0.039 0.0917 0.378 CD4_TEM L2
ENSG00000088035 ALG6 -326630 sc-eQTL 1.55e-02 -0.222 0.0909 0.378 CD4_TEM L2
ENSG00000116641 DOCK7 352559 sc-eQTL 1.29e-01 -0.136 0.0894 0.378 CD4_TEM L2
ENSG00000125703 ATG4C 256813 sc-eQTL 7.00e-01 -0.0336 0.0873 0.378 CD4_TEM L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 5.60e-02 -0.172 0.0893 0.378 CD4_TEM L2
ENSG00000162607 USP1 604648 sc-eQTL 9.77e-02 -0.141 0.0848 0.378 CD4_TEM L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 7.88e-01 -0.0251 0.0933 0.378 CD4_TEM L2
ENSG00000079739 PGM1 -552466 sc-eQTL 1.58e-01 -0.119 0.084 0.378 CD8_CTL L2
ENSG00000088035 ALG6 -326630 sc-eQTL 5.96e-01 -0.0476 0.0897 0.378 CD8_CTL L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.52e-01 -0.0159 0.0852 0.378 CD8_CTL L2
ENSG00000125703 ATG4C 256813 sc-eQTL 1.77e-01 -0.122 0.0903 0.378 CD8_CTL L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 2.88e-01 -0.1 0.094 0.378 CD8_CTL L2
ENSG00000162607 USP1 604648 sc-eQTL 5.66e-01 -0.0485 0.0844 0.378 CD8_CTL L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 1.79e-01 -0.13 0.0962 0.378 CD8_CTL L2
ENSG00000079739 PGM1 -552466 sc-eQTL 1.02e-03 -0.276 0.083 0.378 CD8_Naive L2
ENSG00000088035 ALG6 -326630 sc-eQTL 8.82e-01 -0.0131 0.0881 0.378 CD8_Naive L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.96e-02 -0.165 0.0904 0.378 CD8_Naive L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.75e-01 -0.0777 0.0873 0.378 CD8_Naive L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 7.52e-02 -0.157 0.0879 0.378 CD8_Naive L2
ENSG00000162607 USP1 604648 sc-eQTL 4.69e-01 -0.0543 0.0748 0.378 CD8_Naive L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 7.92e-02 -0.146 0.0829 0.378 CD8_Naive L2
ENSG00000079739 PGM1 -552466 sc-eQTL 4.15e-01 0.0792 0.0971 0.368 CD8_TCM L2
ENSG00000088035 ALG6 -326630 sc-eQTL 9.07e-01 0.0115 0.0985 0.368 CD8_TCM L2
ENSG00000116641 DOCK7 352559 sc-eQTL 9.49e-01 -0.0062 0.0961 0.368 CD8_TCM L2
ENSG00000125703 ATG4C 256813 sc-eQTL 2.41e-01 0.115 0.0979 0.368 CD8_TCM L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.92e-02 0.187 0.0946 0.368 CD8_TCM L2
ENSG00000162607 USP1 604648 sc-eQTL 1.42e-01 -0.135 0.0914 0.368 CD8_TCM L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 9.34e-01 -0.00809 0.0973 0.368 CD8_TCM L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.85e-01 -0.102 0.0951 0.384 CD8_TEM L2
ENSG00000088035 ALG6 -326630 sc-eQTL 1.54e-01 0.136 0.0952 0.384 CD8_TEM L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.15e-01 0.0218 0.0928 0.384 CD8_TEM L2
ENSG00000125703 ATG4C 256813 sc-eQTL 9.18e-01 -0.00915 0.0892 0.384 CD8_TEM L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 3.25e-01 -0.0951 0.0963 0.384 CD8_TEM L2
ENSG00000162607 USP1 604648 sc-eQTL 2.61e-01 0.103 0.0919 0.384 CD8_TEM L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.12e-01 -0.0947 0.0934 0.384 CD8_TEM L2
ENSG00000079739 PGM1 -552466 sc-eQTL 7.33e-01 0.0309 0.0906 0.377 MAIT L2
ENSG00000088035 ALG6 -326630 sc-eQTL 2.51e-03 -0.268 0.0877 0.377 MAIT L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.37e-01 -0.0406 0.0859 0.377 MAIT L2
ENSG00000125703 ATG4C 256813 sc-eQTL 9.61e-03 -0.233 0.0891 0.377 MAIT L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 7.18e-01 -0.0328 0.0907 0.377 MAIT L2
ENSG00000162607 USP1 604648 sc-eQTL 3.27e-01 -0.0882 0.0898 0.377 MAIT L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.25e-01 0.113 0.0931 0.377 MAIT L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.08e-01 -0.116 0.0916 0.38 NK_CD56bright L2
ENSG00000088035 ALG6 -326630 sc-eQTL 1.25e-01 0.144 0.0937 0.38 NK_CD56bright L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.95e-01 0.0108 0.0817 0.38 NK_CD56bright L2
ENSG00000125703 ATG4C 256813 sc-eQTL 2.36e-01 -0.108 0.091 0.38 NK_CD56bright L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 9.12e-01 0.0105 0.095 0.38 NK_CD56bright L2
ENSG00000162607 USP1 604648 sc-eQTL 4.65e-01 0.0716 0.0979 0.38 NK_CD56bright L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 6.92e-02 0.17 0.093 0.38 NK_CD56bright L2
ENSG00000079739 PGM1 -552466 sc-eQTL 9.22e-01 0.00694 0.0711 0.379 NK_CD56dim L2
ENSG00000088035 ALG6 -326630 sc-eQTL 5.41e-01 0.0552 0.0901 0.379 NK_CD56dim L2
ENSG00000116641 DOCK7 352559 sc-eQTL 9.96e-01 -0.000392 0.0785 0.379 NK_CD56dim L2
ENSG00000125703 ATG4C 256813 sc-eQTL 5.36e-01 0.0493 0.0797 0.379 NK_CD56dim L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 2.16e-01 -0.112 0.0904 0.379 NK_CD56dim L2
ENSG00000162607 USP1 604648 sc-eQTL 3.23e-01 -0.087 0.0878 0.379 NK_CD56dim L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 5.79e-01 0.0545 0.0979 0.379 NK_CD56dim L2
ENSG00000079739 PGM1 -552466 sc-eQTL 7.79e-01 -0.0273 0.0974 0.388 NK_HLA L2
ENSG00000088035 ALG6 -326630 sc-eQTL 7.56e-01 -0.0315 0.101 0.388 NK_HLA L2
ENSG00000116641 DOCK7 352559 sc-eQTL 8.54e-01 0.0142 0.0773 0.388 NK_HLA L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.64e-01 -0.0816 0.0897 0.388 NK_HLA L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 3.58e-01 -0.0867 0.0942 0.388 NK_HLA L2
ENSG00000162607 USP1 604648 sc-eQTL 9.43e-01 -0.00705 0.0988 0.388 NK_HLA L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 1.62e-01 0.125 0.0894 0.388 NK_HLA L2
ENSG00000079739 PGM1 -552466 sc-eQTL 8.04e-01 0.0196 0.079 0.379 NK_cytokine L2
ENSG00000088035 ALG6 -326630 sc-eQTL 3.67e-02 0.186 0.0883 0.379 NK_cytokine L2
ENSG00000116641 DOCK7 352559 sc-eQTL 3.07e-01 -0.0845 0.0825 0.379 NK_cytokine L2
ENSG00000125703 ATG4C 256813 sc-eQTL 1.05e-01 -0.137 0.084 0.379 NK_cytokine L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 2.84e-02 -0.191 0.0866 0.379 NK_cytokine L2
ENSG00000162607 USP1 604648 sc-eQTL 9.43e-01 -0.00657 0.0921 0.379 NK_cytokine L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 8.52e-01 0.0174 0.0933 0.379 NK_cytokine L2
ENSG00000079739 PGM1 -552466 sc-eQTL 1.53e-01 -0.153 0.107 0.385 PB L2
ENSG00000088035 ALG6 -326630 sc-eQTL 2.34e-01 0.134 0.112 0.385 PB L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.85e-01 0.0491 0.121 0.385 PB L2
ENSG00000125703 ATG4C 256813 sc-eQTL 8.19e-01 0.0241 0.105 0.385 PB L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.57e-01 -0.0468 0.105 0.385 PB L2
ENSG00000162607 USP1 604648 sc-eQTL 1.58e-01 0.147 0.104 0.385 PB L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 4.19e-01 -0.0934 0.115 0.385 PB L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.24e-01 -0.104 0.0854 0.378 Pro_T L2
ENSG00000088035 ALG6 -326630 sc-eQTL 9.06e-01 0.0103 0.0872 0.378 Pro_T L2
ENSG00000116641 DOCK7 352559 sc-eQTL 7.83e-01 -0.0241 0.0874 0.378 Pro_T L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.28e-01 -0.0749 0.0764 0.378 Pro_T L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 5.61e-01 0.0447 0.0767 0.378 Pro_T L2
ENSG00000162607 USP1 604648 sc-eQTL 4.07e-01 -0.0438 0.0527 0.378 Pro_T L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 1.28e-01 -0.136 0.0887 0.378 Pro_T L2
ENSG00000079739 PGM1 -552466 sc-eQTL 6.17e-02 -0.167 0.0889 0.378 Treg L2
ENSG00000088035 ALG6 -326630 sc-eQTL 3.20e-01 0.0953 0.0957 0.378 Treg L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.11e-01 -0.0448 0.088 0.378 Treg L2
ENSG00000125703 ATG4C 256813 sc-eQTL 8.23e-01 -0.0202 0.0899 0.378 Treg L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.70e-01 -0.0681 0.094 0.378 Treg L2
ENSG00000162607 USP1 604648 sc-eQTL 2.29e-01 -0.11 0.0907 0.378 Treg L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 2.99e-01 0.0935 0.0898 0.378 Treg L2
ENSG00000079739 PGM1 -552466 sc-eQTL 9.81e-01 -0.00218 0.0902 0.383 cDC L2
ENSG00000088035 ALG6 -326630 sc-eQTL 2.21e-01 0.112 0.0911 0.383 cDC L2
ENSG00000116641 DOCK7 352559 sc-eQTL 3.53e-01 -0.0834 0.0895 0.383 cDC L2
ENSG00000125703 ATG4C 256813 sc-eQTL 3.93e-01 -0.0666 0.0778 0.383 cDC L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.83e-01 -0.0404 0.0987 0.383 cDC L2
ENSG00000162607 USP1 604648 sc-eQTL 6.15e-01 -0.0443 0.0879 0.383 cDC L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 8.06e-02 -0.138 0.0787 0.383 cDC L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.82e-01 -0.0906 0.084 0.378 cMono_IL1B L2
ENSG00000088035 ALG6 -326630 sc-eQTL 6.86e-01 -0.0341 0.0843 0.378 cMono_IL1B L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.27e-01 0.0432 0.0888 0.378 cMono_IL1B L2
ENSG00000125703 ATG4C 256813 sc-eQTL 2.07e-01 -0.0788 0.0623 0.378 cMono_IL1B L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 4.77e-02 -0.175 0.0877 0.378 cMono_IL1B L2
ENSG00000162607 USP1 604648 sc-eQTL 6.69e-01 -0.0335 0.0781 0.378 cMono_IL1B L2
ENSG00000240563 L1TD1 846096 sc-eQTL 5.55e-01 0.0463 0.0784 0.378 cMono_IL1B L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.40e-02 -0.213 0.0939 0.378 cMono_S100A L2
ENSG00000088035 ALG6 -326630 sc-eQTL 4.20e-01 -0.0777 0.0961 0.378 cMono_S100A L2
ENSG00000116641 DOCK7 352559 sc-eQTL 4.04e-01 -0.0746 0.0891 0.378 cMono_S100A L2
ENSG00000125703 ATG4C 256813 sc-eQTL 6.74e-01 0.0325 0.0772 0.378 cMono_S100A L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.05e-01 -0.0451 0.0871 0.378 cMono_S100A L2
ENSG00000162607 USP1 604648 sc-eQTL 5.90e-01 0.0484 0.0897 0.378 cMono_S100A L2
ENSG00000240563 L1TD1 846096 sc-eQTL 7.58e-01 -0.023 0.0746 0.378 cMono_S100A L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.42e-01 -0.13 0.11 0.382 gdT L2
ENSG00000088035 ALG6 -326630 sc-eQTL 8.23e-01 -0.0264 0.118 0.382 gdT L2
ENSG00000116641 DOCK7 352559 sc-eQTL 4.97e-01 0.0788 0.116 0.382 gdT L2
ENSG00000125703 ATG4C 256813 sc-eQTL 8.42e-01 -0.0221 0.111 0.382 gdT L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.27e-01 0.0573 0.118 0.382 gdT L2
ENSG00000162607 USP1 604648 sc-eQTL 9.00e-01 0.014 0.111 0.382 gdT L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.13e-02 0.248 0.114 0.382 gdT L2
ENSG00000079739 PGM1 -552466 sc-eQTL 2.20e-01 -0.117 0.0953 0.378 intMono L2
ENSG00000088035 ALG6 -326630 sc-eQTL 2.28e-01 0.107 0.0888 0.378 intMono L2
ENSG00000116641 DOCK7 352559 sc-eQTL 6.82e-01 0.0374 0.0909 0.378 intMono L2
ENSG00000125703 ATG4C 256813 sc-eQTL 4.79e-02 0.171 0.086 0.378 intMono L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 5.23e-01 0.0612 0.0956 0.378 intMono L2
ENSG00000162607 USP1 604648 sc-eQTL 1.06e-01 0.157 0.0967 0.378 intMono L2
ENSG00000240563 L1TD1 846096 sc-eQTL 3.41e-01 0.0681 0.0714 0.378 intMono L2
ENSG00000079739 PGM1 -552466 sc-eQTL 7.69e-01 -0.0257 0.0872 0.38 ncMono L2
ENSG00000088035 ALG6 -326630 sc-eQTL 6.68e-01 0.0412 0.0958 0.38 ncMono L2
ENSG00000116641 DOCK7 352559 sc-eQTL 3.03e-01 -0.0972 0.0941 0.38 ncMono L2
ENSG00000125703 ATG4C 256813 sc-eQTL 2.30e-01 0.106 0.0878 0.38 ncMono L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 3.99e-01 -0.0777 0.092 0.38 ncMono L2
ENSG00000162607 USP1 604648 sc-eQTL 2.44e-01 0.11 0.0939 0.38 ncMono L2
ENSG00000240563 L1TD1 846096 sc-eQTL 5.48e-01 0.0402 0.0667 0.38 ncMono L2
ENSG00000079739 PGM1 -552466 sc-eQTL 6.95e-01 -0.0404 0.103 0.393 pDC L2
ENSG00000088035 ALG6 -326630 sc-eQTL 3.54e-01 -0.093 0.0999 0.393 pDC L2
ENSG00000116641 DOCK7 352559 sc-eQTL 5.36e-01 0.0634 0.102 0.393 pDC L2
ENSG00000125703 ATG4C 256813 sc-eQTL 6.20e-01 0.0456 0.0917 0.393 pDC L2
ENSG00000142856 ITGB3BP -552776 sc-eQTL 8.05e-01 -0.0255 0.103 0.393 pDC L2
ENSG00000162607 USP1 604648 sc-eQTL 8.71e-01 -0.0171 0.105 0.393 pDC L2
ENSG00000203965 EFCAB7 -482427 sc-eQTL 3.50e-01 0.0853 0.091 0.393 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -552466 sc-eQTL 2.65e-01 -0.0966 0.0865 0.378 B_Memory LOneK1K
ENSG00000088035 ALG6 -326630 sc-eQTL 2.13e-01 0.119 0.0956 0.378 B_Memory LOneK1K
ENSG00000116641 DOCK7 352559 sc-eQTL 8.14e-01 -0.0196 0.0832 0.378 B_Memory LOneK1K
ENSG00000125703 ATG4C 256813 sc-eQTL 5.79e-01 0.0373 0.0672 0.378 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -552776 sc-eQTL 7.93e-01 -0.0233 0.0884 0.378 B_Memory LOneK1K
ENSG00000162607 USP1 604648 sc-eQTL 1.00e-01 -0.141 0.0853 0.378 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -482427 sc-eQTL 5.20e-01 0.0594 0.0921 0.378 B_Memory LOneK1K
ENSG00000079739 PGM1 -552466 sc-eQTL 2.89e-01 -0.0967 0.0908 0.378 B_Naive LOneK1K
ENSG00000088035 ALG6 -326630 sc-eQTL 7.83e-01 0.0259 0.0938 0.378 B_Naive LOneK1K
ENSG00000116641 DOCK7 352559 sc-eQTL 8.66e-01 -0.0148 0.0876 0.378 B_Naive LOneK1K
ENSG00000125703 ATG4C 256813 sc-eQTL 7.72e-01 -0.0194 0.0668 0.378 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -552776 sc-eQTL 6.97e-01 -0.0369 0.0944 0.378 B_Naive LOneK1K
ENSG00000162607 USP1 604648 sc-eQTL 5.32e-02 -0.156 0.0805 0.378 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -482427 sc-eQTL 7.15e-02 -0.171 0.0942 0.378 B_Naive LOneK1K
ENSG00000079739 PGM1 -552466 sc-eQTL 4.57e-02 -0.173 0.0863 0.378 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -326630 sc-eQTL 6.11e-01 -0.0429 0.0843 0.378 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 352559 sc-eQTL 7.93e-01 -0.0224 0.0849 0.378 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 256813 sc-eQTL 3.49e-01 -0.0549 0.0586 0.378 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -552776 sc-eQTL 7.02e-02 -0.157 0.0862 0.378 CD14_Mono LOneK1K
ENSG00000162607 USP1 604648 sc-eQTL 6.00e-01 0.0389 0.0742 0.378 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 846096 sc-eQTL 6.43e-01 -0.0373 0.0804 0.378 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -552466 sc-eQTL 4.79e-01 -0.059 0.0832 0.379 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -326630 sc-eQTL 3.18e-01 0.0945 0.0943 0.379 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 352559 sc-eQTL 7.27e-01 0.0326 0.0935 0.379 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 256813 sc-eQTL 3.02e-01 0.0824 0.0796 0.379 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -552776 sc-eQTL 7.37e-01 -0.0311 0.0926 0.379 CD16_Mono LOneK1K
ENSG00000162607 USP1 604648 sc-eQTL 5.20e-02 0.169 0.0862 0.379 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 846096 sc-eQTL 2.85e-01 0.0635 0.0592 0.379 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -552466 sc-eQTL 8.25e-01 0.0154 0.0695 0.379 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -326630 sc-eQTL 8.99e-02 0.141 0.0828 0.379 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 352559 sc-eQTL 6.59e-01 -0.033 0.0747 0.379 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 256813 sc-eQTL 2.24e-01 -0.0906 0.0743 0.379 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -552776 sc-eQTL 5.48e-02 -0.169 0.0876 0.379 NK_CD56dim LOneK1K
ENSG00000162607 USP1 604648 sc-eQTL 4.87e-01 -0.0558 0.0802 0.379 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -482427 sc-eQTL 4.65e-01 0.0714 0.0975 0.379 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 846096 eQTL 0.00994 -0.105 0.0408 0.0 0.0 0.326

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -326630 1.29e-06 9.55e-07 2.77e-07 6.75e-07 3.48e-07 4.92e-07 1.32e-06 3.95e-07 1.49e-06 5.19e-07 1.48e-06 7e-07 1.99e-06 2.79e-07 5.35e-07 9.19e-07 8.89e-07 6.91e-07 8.67e-07 6.33e-07 8.11e-07 1.63e-06 9.01e-07 6.34e-07 1.94e-06 6.57e-07 9.01e-07 7.14e-07 1.29e-06 1.25e-06 5.45e-07 2.95e-07 2.42e-07 6.86e-07 5.63e-07 4.6e-07 7.25e-07 2.73e-07 3.78e-07 3.01e-07 2.84e-07 1.53e-06 1.37e-07 4.15e-08 2.96e-07 1.11e-07 2.42e-07 1.38e-07 2.04e-07