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Genes within 1Mb (chr1:63039288:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554123 sc-eQTL 1.51e-01 -0.113 0.0784 0.4 B L1
ENSG00000088035 ALG6 -328287 sc-eQTL 2.73e-01 0.0894 0.0814 0.4 B L1
ENSG00000116641 DOCK7 350902 sc-eQTL 3.95e-01 -0.0694 0.0815 0.4 B L1
ENSG00000125703 ATG4C 255156 sc-eQTL 8.69e-01 -0.00938 0.0567 0.4 B L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.15e-01 -0.033 0.0902 0.4 B L1
ENSG00000162607 USP1 602991 sc-eQTL 1.59e-02 -0.188 0.0773 0.4 B L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.19e-01 -0.0922 0.0923 0.4 B L1
ENSG00000079739 PGM1 -554123 sc-eQTL 1.22e-01 -0.104 0.0671 0.4 CD4T L1
ENSG00000088035 ALG6 -328287 sc-eQTL 5.25e-01 -0.0474 0.0744 0.4 CD4T L1
ENSG00000116641 DOCK7 350902 sc-eQTL 5.02e-01 -0.0506 0.0753 0.4 CD4T L1
ENSG00000125703 ATG4C 255156 sc-eQTL 7.28e-01 -0.0212 0.0609 0.4 CD4T L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 4.92e-02 -0.169 0.0857 0.4 CD4T L1
ENSG00000162607 USP1 602991 sc-eQTL 8.19e-02 -0.103 0.0587 0.4 CD4T L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 4.18e-02 -0.157 0.0768 0.4 CD4T L1
ENSG00000079739 PGM1 -554123 sc-eQTL 4.89e-03 -0.209 0.0734 0.4 CD8T L1
ENSG00000088035 ALG6 -328287 sc-eQTL 1.80e-01 0.11 0.0821 0.4 CD8T L1
ENSG00000116641 DOCK7 350902 sc-eQTL 6.78e-01 -0.0347 0.0835 0.4 CD8T L1
ENSG00000125703 ATG4C 255156 sc-eQTL 6.89e-01 -0.0318 0.0793 0.4 CD8T L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.41e-01 -0.13 0.0882 0.4 CD8T L1
ENSG00000162607 USP1 602991 sc-eQTL 4.02e-01 -0.058 0.069 0.4 CD8T L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.36e-01 -0.132 0.0879 0.4 CD8T L1
ENSG00000079739 PGM1 -554123 sc-eQTL 5.66e-01 -0.0491 0.0854 0.403 DC L1
ENSG00000088035 ALG6 -328287 sc-eQTL 8.89e-01 -0.0123 0.0882 0.403 DC L1
ENSG00000116641 DOCK7 350902 sc-eQTL 6.31e-01 -0.0434 0.0904 0.403 DC L1
ENSG00000125703 ATG4C 255156 sc-eQTL 5.33e-01 0.0441 0.0707 0.403 DC L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 8.46e-01 -0.0192 0.0989 0.403 DC L1
ENSG00000162607 USP1 602991 sc-eQTL 8.55e-01 -0.0158 0.0863 0.403 DC L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.49e-01 0.0991 0.0858 0.403 DC L1
ENSG00000079739 PGM1 -554123 sc-eQTL 6.12e-02 -0.153 0.0814 0.4 Mono L1
ENSG00000088035 ALG6 -328287 sc-eQTL 4.72e-01 -0.0616 0.0855 0.4 Mono L1
ENSG00000116641 DOCK7 350902 sc-eQTL 7.22e-01 -0.0295 0.0828 0.4 Mono L1
ENSG00000125703 ATG4C 255156 sc-eQTL 9.59e-01 -0.00291 0.056 0.4 Mono L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.94e-01 -0.115 0.0881 0.4 Mono L1
ENSG00000162607 USP1 602991 sc-eQTL 2.62e-01 0.0815 0.0724 0.4 Mono L1
ENSG00000240563 L1TD1 844439 sc-eQTL 5.95e-01 0.0361 0.0678 0.4 Mono L1
ENSG00000079739 PGM1 -554123 sc-eQTL 8.27e-01 0.0152 0.0693 0.399 NK L1
ENSG00000088035 ALG6 -328287 sc-eQTL 1.09e-02 0.206 0.08 0.399 NK L1
ENSG00000116641 DOCK7 350902 sc-eQTL 2.85e-01 -0.0716 0.0668 0.399 NK L1
ENSG00000125703 ATG4C 255156 sc-eQTL 2.45e-01 -0.0835 0.0717 0.399 NK L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.70e-02 -0.212 0.0882 0.399 NK L1
ENSG00000162607 USP1 602991 sc-eQTL 5.19e-01 -0.0515 0.0798 0.399 NK L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.26e-01 0.148 0.0965 0.399 NK L1
ENSG00000079739 PGM1 -554123 sc-eQTL 6.23e-01 -0.0393 0.0798 0.4 Other_T L1
ENSG00000088035 ALG6 -328287 sc-eQTL 1.49e-01 -0.116 0.0798 0.4 Other_T L1
ENSG00000116641 DOCK7 350902 sc-eQTL 5.98e-01 0.0432 0.0819 0.4 Other_T L1
ENSG00000125703 ATG4C 255156 sc-eQTL 6.34e-02 -0.131 0.0703 0.4 Other_T L1
ENSG00000142856 ITGB3BP -554433 sc-eQTL 8.87e-01 0.00897 0.0629 0.4 Other_T L1
ENSG00000162607 USP1 602991 sc-eQTL 2.97e-01 0.0569 0.0544 0.4 Other_T L1
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.37e-01 0.115 0.0967 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554123 sc-eQTL 7.44e-02 -0.187 0.104 0.403 B_Activated L2
ENSG00000088035 ALG6 -328287 sc-eQTL 6.39e-01 -0.0473 0.101 0.403 B_Activated L2
ENSG00000116641 DOCK7 350902 sc-eQTL 3.63e-01 -0.0853 0.0935 0.403 B_Activated L2
ENSG00000125703 ATG4C 255156 sc-eQTL 1.92e-01 0.129 0.0981 0.403 B_Activated L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.69e-01 0.0284 0.0963 0.403 B_Activated L2
ENSG00000162607 USP1 602991 sc-eQTL 3.82e-01 -0.0913 0.104 0.403 B_Activated L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.77e-01 -0.0806 0.0909 0.403 B_Activated L2
ENSG00000079739 PGM1 -554123 sc-eQTL 2.15e-01 -0.117 0.0943 0.401 B_Intermediate L2
ENSG00000088035 ALG6 -328287 sc-eQTL 2.13e-01 0.12 0.0958 0.401 B_Intermediate L2
ENSG00000116641 DOCK7 350902 sc-eQTL 6.95e-01 -0.036 0.0918 0.401 B_Intermediate L2
ENSG00000125703 ATG4C 255156 sc-eQTL 4.13e-01 -0.0637 0.0776 0.401 B_Intermediate L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 4.94e-01 -0.0634 0.0925 0.401 B_Intermediate L2
ENSG00000162607 USP1 602991 sc-eQTL 6.51e-01 -0.0419 0.0924 0.401 B_Intermediate L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.34e-02 0.207 0.0906 0.401 B_Intermediate L2
ENSG00000079739 PGM1 -554123 sc-eQTL 9.91e-01 0.00106 0.0928 0.403 B_Memory L2
ENSG00000088035 ALG6 -328287 sc-eQTL 4.59e-01 0.07 0.0942 0.403 B_Memory L2
ENSG00000116641 DOCK7 350902 sc-eQTL 2.55e-01 0.101 0.0882 0.403 B_Memory L2
ENSG00000125703 ATG4C 255156 sc-eQTL 1.68e-01 0.116 0.0837 0.403 B_Memory L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 2.00e-01 0.123 0.0959 0.403 B_Memory L2
ENSG00000162607 USP1 602991 sc-eQTL 9.05e-02 -0.164 0.0964 0.403 B_Memory L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.32e-01 0.0927 0.0953 0.403 B_Memory L2
ENSG00000079739 PGM1 -554123 sc-eQTL 7.87e-01 -0.0255 0.0942 0.4 B_Naive1 L2
ENSG00000088035 ALG6 -328287 sc-eQTL 9.21e-01 -0.00943 0.0945 0.4 B_Naive1 L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.82e-01 0.00206 0.0906 0.4 B_Naive1 L2
ENSG00000125703 ATG4C 255156 sc-eQTL 5.64e-01 0.0403 0.0697 0.4 B_Naive1 L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 4.04e-01 -0.0774 0.0924 0.4 B_Naive1 L2
ENSG00000162607 USP1 602991 sc-eQTL 7.80e-02 -0.143 0.0808 0.4 B_Naive1 L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.90e-02 -0.203 0.0978 0.4 B_Naive1 L2
ENSG00000079739 PGM1 -554123 sc-eQTL 2.47e-01 -0.109 0.0934 0.401 B_Naive2 L2
ENSG00000088035 ALG6 -328287 sc-eQTL 3.75e-01 0.0867 0.0975 0.401 B_Naive2 L2
ENSG00000116641 DOCK7 350902 sc-eQTL 5.56e-01 -0.0554 0.0939 0.401 B_Naive2 L2
ENSG00000125703 ATG4C 255156 sc-eQTL 6.27e-01 -0.044 0.0904 0.401 B_Naive2 L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 6.76e-02 0.179 0.0973 0.401 B_Naive2 L2
ENSG00000162607 USP1 602991 sc-eQTL 4.60e-01 -0.069 0.0932 0.401 B_Naive2 L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 6.93e-01 -0.0386 0.0975 0.401 B_Naive2 L2
ENSG00000079739 PGM1 -554123 sc-eQTL 3.72e-01 0.0848 0.0948 0.4 CD4_CTL L2
ENSG00000088035 ALG6 -328287 sc-eQTL 7.68e-01 -0.0296 0.1 0.4 CD4_CTL L2
ENSG00000116641 DOCK7 350902 sc-eQTL 7.07e-01 -0.0331 0.0877 0.4 CD4_CTL L2
ENSG00000125703 ATG4C 255156 sc-eQTL 3.74e-01 -0.0807 0.0906 0.4 CD4_CTL L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 9.98e-01 -0.000208 0.0971 0.4 CD4_CTL L2
ENSG00000162607 USP1 602991 sc-eQTL 7.23e-01 -0.0327 0.0924 0.4 CD4_CTL L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 9.91e-01 -0.00109 0.0923 0.4 CD4_CTL L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.32e-01 -0.114 0.0753 0.4 CD4_Naive L2
ENSG00000088035 ALG6 -328287 sc-eQTL 4.59e-01 -0.061 0.0821 0.4 CD4_Naive L2
ENSG00000116641 DOCK7 350902 sc-eQTL 8.52e-01 -0.0151 0.0808 0.4 CD4_Naive L2
ENSG00000125703 ATG4C 255156 sc-eQTL 3.53e-01 0.0664 0.0713 0.4 CD4_Naive L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.44e-01 -0.128 0.0869 0.4 CD4_Naive L2
ENSG00000162607 USP1 602991 sc-eQTL 6.52e-02 -0.123 0.0662 0.4 CD4_Naive L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 4.37e-02 -0.174 0.0858 0.4 CD4_Naive L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.94e-02 -0.183 0.0778 0.4 CD4_TCM L2
ENSG00000088035 ALG6 -328287 sc-eQTL 6.57e-01 -0.0407 0.0915 0.4 CD4_TCM L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.09e-01 0.00926 0.0811 0.4 CD4_TCM L2
ENSG00000125703 ATG4C 255156 sc-eQTL 3.71e-01 -0.0706 0.0788 0.4 CD4_TCM L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 2.63e-01 -0.104 0.0928 0.4 CD4_TCM L2
ENSG00000162607 USP1 602991 sc-eQTL 5.28e-01 -0.0481 0.0762 0.4 CD4_TCM L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.38e-01 -0.133 0.0896 0.4 CD4_TCM L2
ENSG00000079739 PGM1 -554123 sc-eQTL 4.06e-01 0.0773 0.093 0.4 CD4_TEM L2
ENSG00000088035 ALG6 -328287 sc-eQTL 6.35e-02 -0.173 0.0928 0.4 CD4_TEM L2
ENSG00000116641 DOCK7 350902 sc-eQTL 1.33e-01 -0.137 0.0908 0.4 CD4_TEM L2
ENSG00000125703 ATG4C 255156 sc-eQTL 5.82e-01 -0.0488 0.0886 0.4 CD4_TEM L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.77e-02 -0.216 0.0903 0.4 CD4_TEM L2
ENSG00000162607 USP1 602991 sc-eQTL 4.09e-02 -0.176 0.0858 0.4 CD4_TEM L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 8.54e-01 0.0174 0.0948 0.4 CD4_TEM L2
ENSG00000079739 PGM1 -554123 sc-eQTL 6.59e-02 -0.157 0.0851 0.4 CD8_CTL L2
ENSG00000088035 ALG6 -328287 sc-eQTL 8.43e-01 -0.0181 0.0912 0.4 CD8_CTL L2
ENSG00000116641 DOCK7 350902 sc-eQTL 5.92e-01 -0.0464 0.0865 0.4 CD8_CTL L2
ENSG00000125703 ATG4C 255156 sc-eQTL 2.16e-01 -0.114 0.0918 0.4 CD8_CTL L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 3.59e-01 -0.0879 0.0956 0.4 CD8_CTL L2
ENSG00000162607 USP1 602991 sc-eQTL 2.48e-01 -0.099 0.0855 0.4 CD8_CTL L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 5.14e-01 -0.064 0.098 0.4 CD8_CTL L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.12e-03 -0.278 0.0841 0.4 CD8_Naive L2
ENSG00000088035 ALG6 -328287 sc-eQTL 9.36e-01 0.00721 0.0893 0.4 CD8_Naive L2
ENSG00000116641 DOCK7 350902 sc-eQTL 1.28e-01 -0.14 0.0918 0.4 CD8_Naive L2
ENSG00000125703 ATG4C 255156 sc-eQTL 9.83e-02 -0.146 0.088 0.4 CD8_Naive L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.55e-02 -0.159 0.0891 0.4 CD8_Naive L2
ENSG00000162607 USP1 602991 sc-eQTL 4.36e-01 -0.0592 0.0758 0.4 CD8_Naive L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.57e-02 -0.177 0.0837 0.4 CD8_Naive L2
ENSG00000079739 PGM1 -554123 sc-eQTL 3.68e-01 0.0896 0.0992 0.391 CD8_TCM L2
ENSG00000088035 ALG6 -328287 sc-eQTL 4.92e-01 0.0693 0.101 0.391 CD8_TCM L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.40e-01 0.00738 0.0983 0.391 CD8_TCM L2
ENSG00000125703 ATG4C 255156 sc-eQTL 1.61e-01 0.141 0.1 0.391 CD8_TCM L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.12e-01 0.155 0.097 0.391 CD8_TCM L2
ENSG00000162607 USP1 602991 sc-eQTL 1.07e-01 -0.151 0.0933 0.391 CD8_TCM L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 9.12e-01 -0.0111 0.0995 0.391 CD8_TCM L2
ENSG00000079739 PGM1 -554123 sc-eQTL 3.45e-01 -0.0908 0.0959 0.404 CD8_TEM L2
ENSG00000088035 ALG6 -328287 sc-eQTL 2.84e-01 0.103 0.0962 0.404 CD8_TEM L2
ENSG00000116641 DOCK7 350902 sc-eQTL 4.91e-01 0.0645 0.0934 0.404 CD8_TEM L2
ENSG00000125703 ATG4C 255156 sc-eQTL 8.61e-01 -0.0158 0.0899 0.404 CD8_TEM L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 3.60e-01 -0.089 0.0971 0.404 CD8_TEM L2
ENSG00000162607 USP1 602991 sc-eQTL 4.80e-01 0.0656 0.0927 0.404 CD8_TEM L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.07e-01 -0.119 0.094 0.404 CD8_TEM L2
ENSG00000079739 PGM1 -554123 sc-eQTL 5.46e-01 0.0559 0.0923 0.398 MAIT L2
ENSG00000088035 ALG6 -328287 sc-eQTL 1.20e-02 -0.228 0.0901 0.398 MAIT L2
ENSG00000116641 DOCK7 350902 sc-eQTL 7.89e-01 -0.0235 0.0876 0.398 MAIT L2
ENSG00000125703 ATG4C 255156 sc-eQTL 1.28e-02 -0.229 0.091 0.398 MAIT L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 6.75e-01 -0.0389 0.0925 0.398 MAIT L2
ENSG00000162607 USP1 602991 sc-eQTL 5.54e-01 -0.0544 0.0918 0.398 MAIT L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.30e-01 0.144 0.0948 0.398 MAIT L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.99e-01 -0.121 0.0938 0.4 NK_CD56bright L2
ENSG00000088035 ALG6 -328287 sc-eQTL 1.81e-01 0.129 0.0962 0.4 NK_CD56bright L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.49e-01 -0.00532 0.0837 0.4 NK_CD56bright L2
ENSG00000125703 ATG4C 255156 sc-eQTL 2.82e-01 -0.101 0.0932 0.4 NK_CD56bright L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 6.22e-01 0.048 0.0973 0.4 NK_CD56bright L2
ENSG00000162607 USP1 602991 sc-eQTL 4.21e-01 0.0808 0.1 0.4 NK_CD56bright L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.77e-02 0.199 0.095 0.4 NK_CD56bright L2
ENSG00000079739 PGM1 -554123 sc-eQTL 7.30e-01 0.0249 0.072 0.401 NK_CD56dim L2
ENSG00000088035 ALG6 -328287 sc-eQTL 2.38e-01 0.108 0.0911 0.401 NK_CD56dim L2
ENSG00000116641 DOCK7 350902 sc-eQTL 8.60e-01 0.014 0.0795 0.401 NK_CD56dim L2
ENSG00000125703 ATG4C 255156 sc-eQTL 2.82e-01 0.087 0.0806 0.401 NK_CD56dim L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.02e-01 -0.15 0.0913 0.401 NK_CD56dim L2
ENSG00000162607 USP1 602991 sc-eQTL 3.48e-01 -0.0837 0.089 0.401 NK_CD56dim L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 3.04e-01 0.102 0.0991 0.401 NK_CD56dim L2
ENSG00000079739 PGM1 -554123 sc-eQTL 8.92e-01 -0.0136 0.1 0.411 NK_HLA L2
ENSG00000088035 ALG6 -328287 sc-eQTL 9.13e-01 -0.0114 0.104 0.411 NK_HLA L2
ENSG00000116641 DOCK7 350902 sc-eQTL 6.62e-01 0.0348 0.0794 0.411 NK_HLA L2
ENSG00000125703 ATG4C 255156 sc-eQTL 5.47e-01 -0.0557 0.0923 0.411 NK_HLA L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 3.37e-01 -0.0932 0.0968 0.411 NK_HLA L2
ENSG00000162607 USP1 602991 sc-eQTL 8.82e-01 0.0151 0.102 0.411 NK_HLA L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.22e-01 0.143 0.0919 0.411 NK_HLA L2
ENSG00000079739 PGM1 -554123 sc-eQTL 7.25e-01 0.0283 0.0804 0.401 NK_cytokine L2
ENSG00000088035 ALG6 -328287 sc-eQTL 4.51e-02 0.182 0.0901 0.401 NK_cytokine L2
ENSG00000116641 DOCK7 350902 sc-eQTL 1.62e-01 -0.118 0.0839 0.401 NK_cytokine L2
ENSG00000125703 ATG4C 255156 sc-eQTL 6.17e-02 -0.161 0.0855 0.401 NK_cytokine L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 9.86e-03 -0.229 0.0878 0.401 NK_cytokine L2
ENSG00000162607 USP1 602991 sc-eQTL 7.09e-01 -0.0351 0.0938 0.401 NK_cytokine L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 6.56e-01 0.0424 0.0951 0.401 NK_cytokine L2
ENSG00000079739 PGM1 -554123 sc-eQTL 4.42e-01 -0.0847 0.11 0.407 PB L2
ENSG00000088035 ALG6 -328287 sc-eQTL 3.76e-01 0.102 0.115 0.407 PB L2
ENSG00000116641 DOCK7 350902 sc-eQTL 8.67e-01 0.0208 0.124 0.407 PB L2
ENSG00000125703 ATG4C 255156 sc-eQTL 8.18e-01 -0.0249 0.108 0.407 PB L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.08e-01 -0.0404 0.108 0.407 PB L2
ENSG00000162607 USP1 602991 sc-eQTL 3.80e-01 0.0942 0.107 0.407 PB L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 6.64e-01 -0.0514 0.118 0.407 PB L2
ENSG00000079739 PGM1 -554123 sc-eQTL 2.37e-01 -0.102 0.0861 0.398 Pro_T L2
ENSG00000088035 ALG6 -328287 sc-eQTL 9.12e-01 0.00973 0.0879 0.398 Pro_T L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.71e-01 0.00321 0.0882 0.398 Pro_T L2
ENSG00000125703 ATG4C 255156 sc-eQTL 6.76e-01 -0.0324 0.0772 0.398 Pro_T L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 8.01e-01 0.0195 0.0774 0.398 Pro_T L2
ENSG00000162607 USP1 602991 sc-eQTL 4.04e-01 -0.0444 0.0532 0.398 Pro_T L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.21e-01 -0.139 0.0895 0.398 Pro_T L2
ENSG00000079739 PGM1 -554123 sc-eQTL 8.47e-02 -0.157 0.0907 0.4 Treg L2
ENSG00000088035 ALG6 -328287 sc-eQTL 5.12e-01 0.0641 0.0975 0.4 Treg L2
ENSG00000116641 DOCK7 350902 sc-eQTL 5.42e-01 -0.0546 0.0896 0.4 Treg L2
ENSG00000125703 ATG4C 255156 sc-eQTL 6.00e-01 -0.0481 0.0915 0.4 Treg L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 3.34e-01 -0.0927 0.0956 0.4 Treg L2
ENSG00000162607 USP1 602991 sc-eQTL 2.17e-01 -0.114 0.0924 0.4 Treg L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.91e-01 0.0968 0.0914 0.4 Treg L2
ENSG00000079739 PGM1 -554123 sc-eQTL 5.73e-01 -0.0519 0.0921 0.402 cDC L2
ENSG00000088035 ALG6 -328287 sc-eQTL 1.20e-01 0.145 0.0928 0.402 cDC L2
ENSG00000116641 DOCK7 350902 sc-eQTL 1.83e-01 -0.122 0.0913 0.402 cDC L2
ENSG00000125703 ATG4C 255156 sc-eQTL 6.41e-01 -0.0372 0.0796 0.402 cDC L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.05e-01 -0.0383 0.101 0.402 cDC L2
ENSG00000162607 USP1 602991 sc-eQTL 7.58e-01 -0.0277 0.0898 0.402 cDC L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.26e-01 -0.124 0.0806 0.402 cDC L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.36e-01 -0.127 0.0849 0.4 cMono_IL1B L2
ENSG00000088035 ALG6 -328287 sc-eQTL 6.87e-01 -0.0345 0.0854 0.4 cMono_IL1B L2
ENSG00000116641 DOCK7 350902 sc-eQTL 9.34e-01 -0.00742 0.0901 0.4 cMono_IL1B L2
ENSG00000125703 ATG4C 255156 sc-eQTL 4.39e-01 -0.049 0.0632 0.4 cMono_IL1B L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.24e-01 -0.138 0.0892 0.4 cMono_IL1B L2
ENSG00000162607 USP1 602991 sc-eQTL 6.97e-01 -0.0309 0.0791 0.4 cMono_IL1B L2
ENSG00000240563 L1TD1 844439 sc-eQTL 3.44e-01 0.0752 0.0793 0.4 cMono_IL1B L2
ENSG00000079739 PGM1 -554123 sc-eQTL 1.21e-01 -0.148 0.0954 0.4 cMono_S100A L2
ENSG00000088035 ALG6 -328287 sc-eQTL 2.37e-01 -0.115 0.0969 0.4 cMono_S100A L2
ENSG00000116641 DOCK7 350902 sc-eQTL 4.07e-01 -0.0748 0.09 0.4 cMono_S100A L2
ENSG00000125703 ATG4C 255156 sc-eQTL 8.60e-01 0.0138 0.078 0.4 cMono_S100A L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 8.19e-01 -0.0202 0.088 0.4 cMono_S100A L2
ENSG00000162607 USP1 602991 sc-eQTL 5.17e-01 0.0587 0.0905 0.4 cMono_S100A L2
ENSG00000240563 L1TD1 844439 sc-eQTL 8.71e-01 -0.0122 0.0754 0.4 cMono_S100A L2
ENSG00000079739 PGM1 -554123 sc-eQTL 2.13e-01 -0.14 0.112 0.403 gdT L2
ENSG00000088035 ALG6 -328287 sc-eQTL 6.58e-01 0.0531 0.12 0.403 gdT L2
ENSG00000116641 DOCK7 350902 sc-eQTL 5.18e-01 0.076 0.117 0.403 gdT L2
ENSG00000125703 ATG4C 255156 sc-eQTL 8.93e-01 0.0151 0.112 0.403 gdT L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 6.50e-01 0.0542 0.119 0.403 gdT L2
ENSG00000162607 USP1 602991 sc-eQTL 9.29e-01 -0.0101 0.113 0.403 gdT L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 1.59e-02 0.28 0.115 0.403 gdT L2
ENSG00000079739 PGM1 -554123 sc-eQTL 2.01e-01 -0.123 0.0961 0.398 intMono L2
ENSG00000088035 ALG6 -328287 sc-eQTL 4.37e-01 0.0698 0.0897 0.398 intMono L2
ENSG00000116641 DOCK7 350902 sc-eQTL 7.06e-01 0.0346 0.0917 0.398 intMono L2
ENSG00000125703 ATG4C 255156 sc-eQTL 4.27e-02 0.177 0.0867 0.398 intMono L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 7.99e-01 0.0247 0.0965 0.398 intMono L2
ENSG00000162607 USP1 602991 sc-eQTL 2.21e-01 0.12 0.0978 0.398 intMono L2
ENSG00000240563 L1TD1 844439 sc-eQTL 5.50e-01 0.0432 0.0721 0.398 intMono L2
ENSG00000079739 PGM1 -554123 sc-eQTL 8.89e-01 0.0122 0.0879 0.398 ncMono L2
ENSG00000088035 ALG6 -328287 sc-eQTL 9.00e-01 0.0121 0.0965 0.398 ncMono L2
ENSG00000116641 DOCK7 350902 sc-eQTL 4.55e-01 -0.0711 0.0949 0.398 ncMono L2
ENSG00000125703 ATG4C 255156 sc-eQTL 3.61e-01 0.0811 0.0886 0.398 ncMono L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 3.61e-01 -0.0848 0.0926 0.398 ncMono L2
ENSG00000162607 USP1 602991 sc-eQTL 1.03e-01 0.154 0.0942 0.398 ncMono L2
ENSG00000240563 L1TD1 844439 sc-eQTL 5.68e-01 0.0384 0.0672 0.398 ncMono L2
ENSG00000079739 PGM1 -554123 sc-eQTL 3.64e-01 -0.0945 0.104 0.415 pDC L2
ENSG00000088035 ALG6 -328287 sc-eQTL 2.33e-01 -0.121 0.101 0.415 pDC L2
ENSG00000116641 DOCK7 350902 sc-eQTL 4.86e-01 0.0723 0.103 0.415 pDC L2
ENSG00000125703 ATG4C 255156 sc-eQTL 7.48e-01 0.0299 0.0929 0.415 pDC L2
ENSG00000142856 ITGB3BP -554433 sc-eQTL 5.85e-01 -0.057 0.104 0.415 pDC L2
ENSG00000162607 USP1 602991 sc-eQTL 8.19e-01 -0.0244 0.106 0.415 pDC L2
ENSG00000203965 EFCAB7 -484084 sc-eQTL 4.88e-01 0.0641 0.0921 0.415 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554123 sc-eQTL 2.56e-01 -0.0992 0.087 0.4 B_Memory LOneK1K
ENSG00000088035 ALG6 -328287 sc-eQTL 1.24e-01 0.148 0.096 0.4 B_Memory LOneK1K
ENSG00000116641 DOCK7 350902 sc-eQTL 8.77e-01 -0.013 0.0838 0.4 B_Memory LOneK1K
ENSG00000125703 ATG4C 255156 sc-eQTL 7.73e-01 0.0195 0.0677 0.4 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -554433 sc-eQTL 6.13e-01 0.045 0.0889 0.4 B_Memory LOneK1K
ENSG00000162607 USP1 602991 sc-eQTL 9.58e-02 -0.144 0.0858 0.4 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.57e-01 0.105 0.0925 0.4 B_Memory LOneK1K
ENSG00000079739 PGM1 -554123 sc-eQTL 4.05e-01 -0.0763 0.0916 0.4 B_Naive LOneK1K
ENSG00000088035 ALG6 -328287 sc-eQTL 7.68e-01 0.0279 0.0944 0.4 B_Naive LOneK1K
ENSG00000116641 DOCK7 350902 sc-eQTL 4.76e-01 -0.0629 0.0881 0.4 B_Naive LOneK1K
ENSG00000125703 ATG4C 255156 sc-eQTL 7.64e-01 0.0202 0.0673 0.4 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -554433 sc-eQTL 9.60e-01 0.00479 0.0951 0.4 B_Naive LOneK1K
ENSG00000162607 USP1 602991 sc-eQTL 3.51e-02 -0.172 0.0809 0.4 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -484084 sc-eQTL 6.13e-02 -0.178 0.0948 0.4 B_Naive LOneK1K
ENSG00000079739 PGM1 -554123 sc-eQTL 5.94e-02 -0.165 0.0871 0.4 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -328287 sc-eQTL 4.70e-01 -0.0615 0.085 0.4 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 350902 sc-eQTL 5.13e-01 -0.0561 0.0856 0.4 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 255156 sc-eQTL 4.39e-01 -0.0459 0.0591 0.4 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -554433 sc-eQTL 2.10e-01 -0.11 0.0873 0.4 CD14_Mono LOneK1K
ENSG00000162607 USP1 602991 sc-eQTL 5.90e-01 0.0404 0.0748 0.4 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 844439 sc-eQTL 9.94e-01 0.000649 0.0811 0.4 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -554123 sc-eQTL 5.80e-01 -0.0466 0.0841 0.399 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -328287 sc-eQTL 6.51e-01 0.0432 0.0955 0.399 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 350902 sc-eQTL 6.07e-01 0.0487 0.0945 0.399 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 255156 sc-eQTL 4.52e-01 0.0607 0.0805 0.399 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -554433 sc-eQTL 4.66e-01 -0.0683 0.0935 0.399 CD16_Mono LOneK1K
ENSG00000162607 USP1 602991 sc-eQTL 4.02e-02 0.18 0.0871 0.399 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 844439 sc-eQTL 3.16e-01 0.0602 0.0599 0.399 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -554123 sc-eQTL 6.11e-01 0.0359 0.0705 0.401 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -328287 sc-eQTL 3.30e-02 0.18 0.0838 0.401 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 350902 sc-eQTL 6.03e-01 -0.0395 0.0759 0.401 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 255156 sc-eQTL 3.59e-01 -0.0695 0.0756 0.401 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -554433 sc-eQTL 1.42e-02 -0.219 0.0885 0.401 NK_CD56dim LOneK1K
ENSG00000162607 USP1 602991 sc-eQTL 5.22e-01 -0.0522 0.0814 0.401 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -484084 sc-eQTL 2.26e-01 0.12 0.0988 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 844439 eQTL 0.00705 -0.109 0.0402 0.0 0.0 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -328287 1.3e-06 1.01e-06 3.26e-07 7.96e-07 3.17e-07 6.38e-07 1.38e-06 3.46e-07 1.16e-06 4.11e-07 1.39e-06 6.36e-07 1.99e-06 2.67e-07 5.58e-07 7.54e-07 8.13e-07 5.88e-07 8.13e-07 6.88e-07 4.77e-07 1.22e-06 8.6e-07 6.06e-07 2.06e-06 3.79e-07 8.29e-07 7.27e-07 1.25e-06 1.27e-06 5.58e-07 1.91e-07 2e-07 5.64e-07 6.02e-07 4.41e-07 4.75e-07 2.42e-07 3.35e-07 2.46e-07 2.6e-07 1.44e-06 6.21e-08 1.3e-07 1.74e-07 1.23e-07 2.16e-07 3.8e-08 1.25e-07