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Genes within 1Mb (chr1:63038477:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554934 sc-eQTL 8.00e-01 0.0201 0.0791 0.639 B L1
ENSG00000088035 ALG6 -329098 sc-eQTL 3.56e-01 -0.0756 0.0818 0.639 B L1
ENSG00000116641 DOCK7 350091 sc-eQTL 2.49e-01 0.0945 0.0817 0.639 B L1
ENSG00000125703 ATG4C 254345 sc-eQTL 5.09e-01 0.0376 0.0569 0.639 B L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.99e-01 0.0613 0.0905 0.639 B L1
ENSG00000162607 USP1 602180 sc-eQTL 1.29e-02 0.195 0.0775 0.639 B L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 3.49e-01 0.087 0.0927 0.639 B L1
ENSG00000079739 PGM1 -554934 sc-eQTL 4.29e-01 0.0534 0.0673 0.639 CD4T L1
ENSG00000088035 ALG6 -329098 sc-eQTL 1.77e-01 0.1 0.0741 0.639 CD4T L1
ENSG00000116641 DOCK7 350091 sc-eQTL 4.07e-01 0.0625 0.0752 0.639 CD4T L1
ENSG00000125703 ATG4C 254345 sc-eQTL 7.71e-01 0.0177 0.0608 0.639 CD4T L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.63e-02 0.171 0.0855 0.639 CD4T L1
ENSG00000162607 USP1 602180 sc-eQTL 8.13e-02 0.103 0.0586 0.639 CD4T L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.44e-02 0.149 0.0768 0.639 CD4T L1
ENSG00000079739 PGM1 -554934 sc-eQTL 2.40e-03 0.225 0.0732 0.639 CD8T L1
ENSG00000088035 ALG6 -329098 sc-eQTL 1.89e-01 -0.108 0.0821 0.639 CD8T L1
ENSG00000116641 DOCK7 350091 sc-eQTL 3.78e-01 0.0737 0.0834 0.639 CD8T L1
ENSG00000125703 ATG4C 254345 sc-eQTL 4.02e-01 0.0665 0.0792 0.639 CD8T L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.26e-01 0.136 0.0882 0.639 CD8T L1
ENSG00000162607 USP1 602180 sc-eQTL 3.10e-01 0.0702 0.069 0.639 CD8T L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.17e-01 0.139 0.0879 0.639 CD8T L1
ENSG00000079739 PGM1 -554934 sc-eQTL 4.94e-01 0.0584 0.0853 0.637 DC L1
ENSG00000088035 ALG6 -329098 sc-eQTL 8.45e-01 0.0172 0.0881 0.637 DC L1
ENSG00000116641 DOCK7 350091 sc-eQTL 5.04e-01 0.0603 0.0902 0.637 DC L1
ENSG00000125703 ATG4C 254345 sc-eQTL 5.05e-01 -0.0472 0.0706 0.637 DC L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.18e-01 0.08 0.0986 0.637 DC L1
ENSG00000162607 USP1 602180 sc-eQTL 8.29e-01 -0.0186 0.0862 0.637 DC L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.87e-01 -0.0916 0.0857 0.637 DC L1
ENSG00000079739 PGM1 -554934 sc-eQTL 1.27e-02 0.202 0.0805 0.639 Mono L1
ENSG00000088035 ALG6 -329098 sc-eQTL 3.47e-01 0.0803 0.0851 0.639 Mono L1
ENSG00000116641 DOCK7 350091 sc-eQTL 4.45e-01 0.063 0.0824 0.639 Mono L1
ENSG00000125703 ATG4C 254345 sc-eQTL 9.01e-01 -0.00692 0.0557 0.639 Mono L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.34e-01 0.132 0.0876 0.639 Mono L1
ENSG00000162607 USP1 602180 sc-eQTL 3.25e-01 -0.0712 0.0722 0.639 Mono L1
ENSG00000240563 L1TD1 843628 sc-eQTL 7.81e-01 0.0188 0.0675 0.639 Mono L1
ENSG00000079739 PGM1 -554934 sc-eQTL 6.34e-01 0.0332 0.0696 0.639 NK L1
ENSG00000088035 ALG6 -329098 sc-eQTL 1.62e-01 -0.114 0.0813 0.639 NK L1
ENSG00000116641 DOCK7 350091 sc-eQTL 9.31e-02 0.113 0.0668 0.639 NK L1
ENSG00000125703 ATG4C 254345 sc-eQTL 2.63e-01 0.0808 0.072 0.639 NK L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.56e-03 0.253 0.0881 0.639 NK L1
ENSG00000162607 USP1 602180 sc-eQTL 8.13e-01 0.019 0.0802 0.639 NK L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 7.23e-02 -0.175 0.0967 0.639 NK L1
ENSG00000079739 PGM1 -554934 sc-eQTL 4.82e-01 0.0565 0.0803 0.639 Other_T L1
ENSG00000088035 ALG6 -329098 sc-eQTL 2.12e-01 0.101 0.0805 0.639 Other_T L1
ENSG00000116641 DOCK7 350091 sc-eQTL 5.20e-01 -0.0531 0.0824 0.639 Other_T L1
ENSG00000125703 ATG4C 254345 sc-eQTL 1.21e-01 0.11 0.071 0.639 Other_T L1
ENSG00000142856 ITGB3BP -555244 sc-eQTL 8.20e-01 -0.0144 0.0633 0.639 Other_T L1
ENSG00000162607 USP1 602180 sc-eQTL 4.18e-01 -0.0444 0.0548 0.639 Other_T L1
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.13e-01 -0.155 0.0971 0.639 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554934 sc-eQTL 2.60e-02 0.23 0.103 0.638 B_Activated L2
ENSG00000088035 ALG6 -329098 sc-eQTL 5.91e-01 -0.0536 0.0996 0.638 B_Activated L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.11e-01 0.0473 0.0927 0.638 B_Activated L2
ENSG00000125703 ATG4C 254345 sc-eQTL 4.00e-01 -0.0822 0.0974 0.638 B_Activated L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 9.17e-01 0.00991 0.0954 0.638 B_Activated L2
ENSG00000162607 USP1 602180 sc-eQTL 2.61e-01 0.116 0.103 0.638 B_Activated L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.08e-01 0.145 0.0896 0.638 B_Activated L2
ENSG00000079739 PGM1 -554934 sc-eQTL 9.37e-01 0.00743 0.094 0.637 B_Intermediate L2
ENSG00000088035 ALG6 -329098 sc-eQTL 2.14e-01 -0.119 0.0951 0.637 B_Intermediate L2
ENSG00000116641 DOCK7 350091 sc-eQTL 3.69e-01 0.0819 0.091 0.637 B_Intermediate L2
ENSG00000125703 ATG4C 254345 sc-eQTL 1.72e-01 0.105 0.0769 0.637 B_Intermediate L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.83e-01 0.0646 0.0919 0.637 B_Intermediate L2
ENSG00000162607 USP1 602180 sc-eQTL 6.01e-01 0.0481 0.0918 0.637 B_Intermediate L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.41e-02 -0.205 0.09 0.637 B_Intermediate L2
ENSG00000079739 PGM1 -554934 sc-eQTL 5.42e-01 -0.0562 0.0921 0.636 B_Memory L2
ENSG00000088035 ALG6 -329098 sc-eQTL 5.21e-01 -0.0602 0.0937 0.636 B_Memory L2
ENSG00000116641 DOCK7 350091 sc-eQTL 4.02e-01 -0.0737 0.0878 0.636 B_Memory L2
ENSG00000125703 ATG4C 254345 sc-eQTL 7.55e-02 -0.148 0.0829 0.636 B_Memory L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 5.64e-02 -0.182 0.0948 0.636 B_Memory L2
ENSG00000162607 USP1 602180 sc-eQTL 6.41e-02 0.178 0.0957 0.636 B_Memory L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.82e-01 -0.127 0.0945 0.636 B_Memory L2
ENSG00000079739 PGM1 -554934 sc-eQTL 9.82e-01 0.00211 0.0937 0.639 B_Naive1 L2
ENSG00000088035 ALG6 -329098 sc-eQTL 6.17e-01 0.0471 0.0941 0.639 B_Naive1 L2
ENSG00000116641 DOCK7 350091 sc-eQTL 9.53e-01 -0.0053 0.0902 0.639 B_Naive1 L2
ENSG00000125703 ATG4C 254345 sc-eQTL 7.47e-01 -0.0224 0.0694 0.639 B_Naive1 L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.72e-01 0.126 0.0917 0.639 B_Naive1 L2
ENSG00000162607 USP1 602180 sc-eQTL 3.99e-02 0.166 0.0802 0.639 B_Naive1 L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.43e-02 0.189 0.0974 0.639 B_Naive1 L2
ENSG00000079739 PGM1 -554934 sc-eQTL 6.33e-01 0.0446 0.0932 0.637 B_Naive2 L2
ENSG00000088035 ALG6 -329098 sc-eQTL 8.15e-01 -0.0227 0.0973 0.637 B_Naive2 L2
ENSG00000116641 DOCK7 350091 sc-eQTL 7.37e-01 0.0315 0.0935 0.637 B_Naive2 L2
ENSG00000125703 ATG4C 254345 sc-eQTL 2.45e-01 0.105 0.0897 0.637 B_Naive2 L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 7.09e-02 -0.176 0.0969 0.637 B_Naive2 L2
ENSG00000162607 USP1 602180 sc-eQTL 4.57e-01 0.0692 0.0928 0.637 B_Naive2 L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 3.83e-01 0.0847 0.097 0.637 B_Naive2 L2
ENSG00000079739 PGM1 -554934 sc-eQTL 1.02e-01 -0.155 0.0944 0.636 CD4_CTL L2
ENSG00000088035 ALG6 -329098 sc-eQTL 6.72e-01 0.0426 0.1 0.636 CD4_CTL L2
ENSG00000116641 DOCK7 350091 sc-eQTL 7.94e-01 0.0229 0.0878 0.636 CD4_CTL L2
ENSG00000125703 ATG4C 254345 sc-eQTL 5.38e-01 0.056 0.0908 0.636 CD4_CTL L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 9.34e-01 0.00807 0.0972 0.636 CD4_CTL L2
ENSG00000162607 USP1 602180 sc-eQTL 8.72e-01 0.0149 0.0925 0.636 CD4_CTL L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 9.96e-01 -0.000476 0.0923 0.636 CD4_CTL L2
ENSG00000079739 PGM1 -554934 sc-eQTL 3.89e-01 0.0652 0.0755 0.639 CD4_Naive L2
ENSG00000088035 ALG6 -329098 sc-eQTL 1.38e-01 0.122 0.0817 0.639 CD4_Naive L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.41e-01 0.0376 0.0807 0.639 CD4_Naive L2
ENSG00000125703 ATG4C 254345 sc-eQTL 4.43e-01 -0.0548 0.0713 0.639 CD4_Naive L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.15e-01 0.137 0.0867 0.639 CD4_Naive L2
ENSG00000162607 USP1 602180 sc-eQTL 7.69e-02 0.118 0.0662 0.639 CD4_Naive L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.64e-02 0.207 0.0854 0.639 CD4_Naive L2
ENSG00000079739 PGM1 -554934 sc-eQTL 1.10e-01 0.125 0.0781 0.639 CD4_TCM L2
ENSG00000088035 ALG6 -329098 sc-eQTL 7.92e-01 0.0241 0.0913 0.639 CD4_TCM L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.24e-01 0.0397 0.0808 0.639 CD4_TCM L2
ENSG00000125703 ATG4C 254345 sc-eQTL 5.84e-01 0.0431 0.0787 0.639 CD4_TCM L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.91e-01 0.121 0.0924 0.639 CD4_TCM L2
ENSG00000162607 USP1 602180 sc-eQTL 7.37e-01 0.0256 0.0761 0.639 CD4_TCM L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.72e-01 0.0987 0.0896 0.639 CD4_TCM L2
ENSG00000079739 PGM1 -554934 sc-eQTL 3.39e-01 -0.089 0.0929 0.639 CD4_TEM L2
ENSG00000088035 ALG6 -329098 sc-eQTL 1.15e-01 0.147 0.093 0.639 CD4_TEM L2
ENSG00000116641 DOCK7 350091 sc-eQTL 3.50e-01 0.0853 0.091 0.639 CD4_TEM L2
ENSG00000125703 ATG4C 254345 sc-eQTL 6.32e-01 0.0425 0.0886 0.639 CD4_TEM L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 2.00e-02 0.212 0.0903 0.639 CD4_TEM L2
ENSG00000162607 USP1 602180 sc-eQTL 2.89e-02 0.189 0.0857 0.639 CD4_TEM L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 8.81e-01 -0.0142 0.0948 0.639 CD4_TEM L2
ENSG00000079739 PGM1 -554934 sc-eQTL 6.34e-02 0.16 0.0856 0.639 CD8_CTL L2
ENSG00000088035 ALG6 -329098 sc-eQTL 9.96e-01 -0.000442 0.0918 0.639 CD8_CTL L2
ENSG00000116641 DOCK7 350091 sc-eQTL 4.69e-01 0.0632 0.087 0.639 CD8_CTL L2
ENSG00000125703 ATG4C 254345 sc-eQTL 2.25e-01 0.113 0.0924 0.639 CD8_CTL L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.58e-01 0.0715 0.0963 0.639 CD8_CTL L2
ENSG00000162607 USP1 602180 sc-eQTL 1.77e-01 0.116 0.086 0.639 CD8_CTL L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 4.44e-01 0.0757 0.0986 0.639 CD8_CTL L2
ENSG00000079739 PGM1 -554934 sc-eQTL 5.20e-04 0.295 0.0837 0.639 CD8_Naive L2
ENSG00000088035 ALG6 -329098 sc-eQTL 8.87e-01 0.0126 0.0891 0.639 CD8_Naive L2
ENSG00000116641 DOCK7 350091 sc-eQTL 1.39e-01 0.136 0.0917 0.639 CD8_Naive L2
ENSG00000125703 ATG4C 254345 sc-eQTL 3.16e-02 0.189 0.0875 0.639 CD8_Naive L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 3.03e-02 0.193 0.0886 0.639 CD8_Naive L2
ENSG00000162607 USP1 602180 sc-eQTL 2.54e-01 0.0864 0.0755 0.639 CD8_Naive L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.01e-02 0.165 0.0837 0.639 CD8_Naive L2
ENSG00000079739 PGM1 -554934 sc-eQTL 7.92e-01 -0.0266 0.101 0.648 CD8_TCM L2
ENSG00000088035 ALG6 -329098 sc-eQTL 7.81e-01 -0.0284 0.102 0.648 CD8_TCM L2
ENSG00000116641 DOCK7 350091 sc-eQTL 7.19e-01 -0.0358 0.0995 0.648 CD8_TCM L2
ENSG00000125703 ATG4C 254345 sc-eQTL 4.08e-01 -0.0843 0.102 0.648 CD8_TCM L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.15e-01 -0.156 0.0983 0.648 CD8_TCM L2
ENSG00000162607 USP1 602180 sc-eQTL 1.78e-01 0.128 0.0948 0.648 CD8_TCM L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.18e-01 0.0653 0.101 0.648 CD8_TCM L2
ENSG00000079739 PGM1 -554934 sc-eQTL 2.93e-01 0.101 0.0956 0.637 CD8_TEM L2
ENSG00000088035 ALG6 -329098 sc-eQTL 1.97e-01 -0.124 0.0959 0.637 CD8_TEM L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.19e-01 -0.0465 0.0933 0.637 CD8_TEM L2
ENSG00000125703 ATG4C 254345 sc-eQTL 6.34e-01 -0.0428 0.0897 0.637 CD8_TEM L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 3.75e-01 0.0861 0.0969 0.637 CD8_TEM L2
ENSG00000162607 USP1 602180 sc-eQTL 9.71e-01 -0.00333 0.0927 0.637 CD8_TEM L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 3.38e-01 0.0903 0.0939 0.637 CD8_TEM L2
ENSG00000079739 PGM1 -554934 sc-eQTL 9.83e-01 0.002 0.0922 0.641 MAIT L2
ENSG00000088035 ALG6 -329098 sc-eQTL 1.86e-02 0.214 0.0901 0.641 MAIT L2
ENSG00000116641 DOCK7 350091 sc-eQTL 4.57e-01 0.0651 0.0874 0.641 MAIT L2
ENSG00000125703 ATG4C 254345 sc-eQTL 1.83e-02 0.216 0.091 0.641 MAIT L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 6.14e-01 0.0467 0.0923 0.641 MAIT L2
ENSG00000162607 USP1 602180 sc-eQTL 9.83e-01 0.00199 0.0917 0.641 MAIT L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 8.72e-02 -0.162 0.0945 0.641 MAIT L2
ENSG00000079739 PGM1 -554934 sc-eQTL 2.22e-01 0.115 0.094 0.642 NK_CD56bright L2
ENSG00000088035 ALG6 -329098 sc-eQTL 5.35e-01 -0.0601 0.0966 0.642 NK_CD56bright L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.86e-01 -0.0339 0.0838 0.642 NK_CD56bright L2
ENSG00000125703 ATG4C 254345 sc-eQTL 7.06e-01 0.0354 0.0936 0.642 NK_CD56bright L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 8.37e-01 -0.02 0.0975 0.642 NK_CD56bright L2
ENSG00000162607 USP1 602180 sc-eQTL 2.99e-01 -0.104 0.1 0.642 NK_CD56bright L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.42e-02 -0.216 0.095 0.642 NK_CD56bright L2
ENSG00000079739 PGM1 -554934 sc-eQTL 7.44e-01 -0.0237 0.0724 0.638 NK_CD56dim L2
ENSG00000088035 ALG6 -329098 sc-eQTL 4.90e-01 -0.0634 0.0918 0.638 NK_CD56dim L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.29e-01 0.0387 0.0799 0.638 NK_CD56dim L2
ENSG00000125703 ATG4C 254345 sc-eQTL 3.95e-01 -0.0691 0.0811 0.638 NK_CD56dim L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 3.40e-02 0.195 0.0914 0.638 NK_CD56dim L2
ENSG00000162607 USP1 602180 sc-eQTL 6.42e-01 0.0417 0.0896 0.638 NK_CD56dim L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 4.25e-01 -0.0796 0.0997 0.638 NK_CD56dim L2
ENSG00000079739 PGM1 -554934 sc-eQTL 3.33e-01 0.0976 0.101 0.63 NK_HLA L2
ENSG00000088035 ALG6 -329098 sc-eQTL 6.36e-01 0.0495 0.105 0.63 NK_HLA L2
ENSG00000116641 DOCK7 350091 sc-eQTL 5.74e-01 -0.045 0.0799 0.63 NK_HLA L2
ENSG00000125703 ATG4C 254345 sc-eQTL 6.06e-01 0.048 0.093 0.63 NK_HLA L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.59e-01 0.137 0.0972 0.63 NK_HLA L2
ENSG00000162607 USP1 602180 sc-eQTL 6.98e-01 -0.0397 0.102 0.63 NK_HLA L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 9.96e-02 -0.153 0.0924 0.63 NK_HLA L2
ENSG00000079739 PGM1 -554934 sc-eQTL 8.35e-01 0.0169 0.081 0.638 NK_cytokine L2
ENSG00000088035 ALG6 -329098 sc-eQTL 2.91e-01 -0.0967 0.0913 0.638 NK_cytokine L2
ENSG00000116641 DOCK7 350091 sc-eQTL 2.87e-02 0.185 0.0838 0.638 NK_cytokine L2
ENSG00000125703 ATG4C 254345 sc-eQTL 5.84e-02 0.164 0.086 0.638 NK_cytokine L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.88e-02 0.21 0.0887 0.638 NK_cytokine L2
ENSG00000162607 USP1 602180 sc-eQTL 4.43e-01 0.0725 0.0943 0.638 NK_cytokine L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.68e-01 -0.0547 0.0956 0.638 NK_cytokine L2
ENSG00000079739 PGM1 -554934 sc-eQTL 5.06e-01 0.073 0.11 0.619 PB L2
ENSG00000088035 ALG6 -329098 sc-eQTL 4.20e-01 -0.093 0.115 0.619 PB L2
ENSG00000116641 DOCK7 350091 sc-eQTL 9.42e-01 0.00896 0.123 0.619 PB L2
ENSG00000125703 ATG4C 254345 sc-eQTL 9.71e-01 -0.00387 0.107 0.619 PB L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.05e-01 0.0895 0.107 0.619 PB L2
ENSG00000162607 USP1 602180 sc-eQTL 4.47e-01 -0.0813 0.107 0.619 PB L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 4.36e-01 0.0917 0.117 0.619 PB L2
ENSG00000079739 PGM1 -554934 sc-eQTL 7.15e-01 0.032 0.0874 0.639 Pro_T L2
ENSG00000088035 ALG6 -329098 sc-eQTL 5.40e-01 -0.0546 0.0889 0.639 Pro_T L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.33e-01 -0.0427 0.0892 0.639 Pro_T L2
ENSG00000125703 ATG4C 254345 sc-eQTL 9.91e-01 0.000916 0.0781 0.639 Pro_T L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 8.00e-01 -0.0199 0.0784 0.639 Pro_T L2
ENSG00000162607 USP1 602180 sc-eQTL 1.75e-01 0.0729 0.0536 0.639 Pro_T L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.89e-01 0.0492 0.091 0.639 Pro_T L2
ENSG00000079739 PGM1 -554934 sc-eQTL 1.24e-01 0.14 0.0904 0.639 Treg L2
ENSG00000088035 ALG6 -329098 sc-eQTL 9.50e-01 -0.00614 0.0972 0.639 Treg L2
ENSG00000116641 DOCK7 350091 sc-eQTL 8.17e-01 0.0207 0.0892 0.639 Treg L2
ENSG00000125703 ATG4C 254345 sc-eQTL 2.02e-01 0.116 0.0908 0.639 Treg L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 7.20e-01 0.0343 0.0954 0.639 Treg L2
ENSG00000162607 USP1 602180 sc-eQTL 1.26e-01 0.141 0.0918 0.639 Treg L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 6.78e-02 -0.166 0.0906 0.639 Treg L2
ENSG00000079739 PGM1 -554934 sc-eQTL 3.85e-01 0.0793 0.091 0.637 cDC L2
ENSG00000088035 ALG6 -329098 sc-eQTL 3.29e-01 -0.0903 0.0922 0.637 cDC L2
ENSG00000116641 DOCK7 350091 sc-eQTL 2.07e-01 0.114 0.0903 0.637 cDC L2
ENSG00000125703 ATG4C 254345 sc-eQTL 6.28e-01 0.0382 0.0788 0.637 cDC L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 7.98e-01 0.0256 0.0999 0.637 cDC L2
ENSG00000162607 USP1 602180 sc-eQTL 5.60e-01 -0.0519 0.0888 0.637 cDC L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.03e-01 0.102 0.0799 0.637 cDC L2
ENSG00000079739 PGM1 -554934 sc-eQTL 7.30e-02 0.152 0.0844 0.639 cMono_IL1B L2
ENSG00000088035 ALG6 -329098 sc-eQTL 6.37e-01 0.0402 0.0851 0.639 cMono_IL1B L2
ENSG00000116641 DOCK7 350091 sc-eQTL 5.90e-01 0.0484 0.0898 0.639 cMono_IL1B L2
ENSG00000125703 ATG4C 254345 sc-eQTL 4.45e-01 0.0483 0.0631 0.639 cMono_IL1B L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.12e-01 0.142 0.0889 0.639 cMono_IL1B L2
ENSG00000162607 USP1 602180 sc-eQTL 4.50e-01 0.0596 0.0788 0.639 cMono_IL1B L2
ENSG00000240563 L1TD1 843628 sc-eQTL 7.97e-01 -0.0204 0.0793 0.639 cMono_IL1B L2
ENSG00000079739 PGM1 -554934 sc-eQTL 3.53e-02 0.2 0.0944 0.639 cMono_S100A L2
ENSG00000088035 ALG6 -329098 sc-eQTL 2.32e-01 0.116 0.0963 0.639 cMono_S100A L2
ENSG00000116641 DOCK7 350091 sc-eQTL 3.02e-01 0.0925 0.0894 0.639 cMono_S100A L2
ENSG00000125703 ATG4C 254345 sc-eQTL 8.31e-01 -0.0166 0.0776 0.639 cMono_S100A L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 5.26e-01 0.0555 0.0875 0.639 cMono_S100A L2
ENSG00000162607 USP1 602180 sc-eQTL 6.74e-01 -0.038 0.0901 0.639 cMono_S100A L2
ENSG00000240563 L1TD1 843628 sc-eQTL 7.94e-01 0.0196 0.075 0.639 cMono_S100A L2
ENSG00000079739 PGM1 -554934 sc-eQTL 1.56e-01 0.161 0.113 0.639 gdT L2
ENSG00000088035 ALG6 -329098 sc-eQTL 6.18e-01 -0.0606 0.121 0.639 gdT L2
ENSG00000116641 DOCK7 350091 sc-eQTL 7.59e-01 -0.0366 0.119 0.639 gdT L2
ENSG00000125703 ATG4C 254345 sc-eQTL 6.20e-01 0.0565 0.114 0.639 gdT L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 9.53e-01 0.00713 0.121 0.639 gdT L2
ENSG00000162607 USP1 602180 sc-eQTL 3.66e-01 0.103 0.114 0.639 gdT L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.08e-02 -0.3 0.116 0.639 gdT L2
ENSG00000079739 PGM1 -554934 sc-eQTL 9.11e-02 0.161 0.0946 0.64 intMono L2
ENSG00000088035 ALG6 -329098 sc-eQTL 5.51e-01 -0.0529 0.0886 0.64 intMono L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.94e-01 -0.0357 0.0906 0.64 intMono L2
ENSG00000125703 ATG4C 254345 sc-eQTL 1.30e-02 -0.213 0.0852 0.64 intMono L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 6.40e-01 -0.0446 0.0952 0.64 intMono L2
ENSG00000162607 USP1 602180 sc-eQTL 1.47e-01 -0.14 0.0964 0.64 intMono L2
ENSG00000240563 L1TD1 843628 sc-eQTL 8.39e-01 0.0145 0.0713 0.64 intMono L2
ENSG00000079739 PGM1 -554934 sc-eQTL 5.66e-01 -0.0505 0.0879 0.64 ncMono L2
ENSG00000088035 ALG6 -329098 sc-eQTL 8.35e-01 0.0202 0.0966 0.64 ncMono L2
ENSG00000116641 DOCK7 350091 sc-eQTL 8.08e-01 0.0231 0.0951 0.64 ncMono L2
ENSG00000125703 ATG4C 254345 sc-eQTL 4.10e-01 -0.0732 0.0887 0.64 ncMono L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 2.71e-01 0.102 0.0926 0.64 ncMono L2
ENSG00000162607 USP1 602180 sc-eQTL 2.99e-02 -0.205 0.0938 0.64 ncMono L2
ENSG00000240563 L1TD1 843628 sc-eQTL 9.77e-01 -0.00193 0.0673 0.64 ncMono L2
ENSG00000079739 PGM1 -554934 sc-eQTL 1.82e-01 0.138 0.103 0.624 pDC L2
ENSG00000088035 ALG6 -329098 sc-eQTL 4.14e-01 0.0826 0.101 0.624 pDC L2
ENSG00000116641 DOCK7 350091 sc-eQTL 6.09e-01 -0.0528 0.103 0.624 pDC L2
ENSG00000125703 ATG4C 254345 sc-eQTL 5.44e-01 -0.0563 0.0925 0.624 pDC L2
ENSG00000142856 ITGB3BP -555244 sc-eQTL 5.10e-01 0.0685 0.104 0.624 pDC L2
ENSG00000162607 USP1 602180 sc-eQTL 6.62e-01 0.0463 0.106 0.624 pDC L2
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.15e-01 -0.0599 0.0919 0.624 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -554934 sc-eQTL 9.75e-01 -0.0027 0.0869 0.639 B_Memory LOneK1K
ENSG00000088035 ALG6 -329098 sc-eQTL 1.12e-01 -0.153 0.0955 0.639 B_Memory LOneK1K
ENSG00000116641 DOCK7 350091 sc-eQTL 6.01e-01 0.0436 0.0833 0.639 B_Memory LOneK1K
ENSG00000125703 ATG4C 254345 sc-eQTL 7.91e-01 -0.0179 0.0674 0.639 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -555244 sc-eQTL 5.49e-01 -0.0531 0.0885 0.639 B_Memory LOneK1K
ENSG00000162607 USP1 602180 sc-eQTL 8.91e-02 0.146 0.0854 0.639 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -484895 sc-eQTL 2.16e-01 -0.114 0.0919 0.639 B_Memory LOneK1K
ENSG00000079739 PGM1 -554934 sc-eQTL 8.00e-01 0.0232 0.0915 0.639 B_Naive LOneK1K
ENSG00000088035 ALG6 -329098 sc-eQTL 7.34e-01 0.0321 0.0942 0.639 B_Naive LOneK1K
ENSG00000116641 DOCK7 350091 sc-eQTL 5.58e-01 0.0516 0.0879 0.639 B_Naive LOneK1K
ENSG00000125703 ATG4C 254345 sc-eQTL 7.58e-01 0.0207 0.0671 0.639 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -555244 sc-eQTL 6.60e-01 0.0418 0.0949 0.639 B_Naive LOneK1K
ENSG00000162607 USP1 602180 sc-eQTL 3.50e-02 0.171 0.0807 0.639 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -484895 sc-eQTL 5.03e-02 0.186 0.0946 0.639 B_Naive LOneK1K
ENSG00000079739 PGM1 -554934 sc-eQTL 1.07e-02 0.222 0.0862 0.639 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -329098 sc-eQTL 4.27e-01 0.0675 0.0847 0.639 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 350091 sc-eQTL 2.66e-01 0.0949 0.0852 0.639 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 254345 sc-eQTL 5.01e-01 0.0397 0.059 0.639 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -555244 sc-eQTL 1.37e-01 0.13 0.0869 0.639 CD14_Mono LOneK1K
ENSG00000162607 USP1 602180 sc-eQTL 9.16e-01 -0.00788 0.0746 0.639 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 843628 sc-eQTL 5.11e-01 0.0532 0.0808 0.639 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -554934 sc-eQTL 6.54e-01 0.0376 0.0839 0.64 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -329098 sc-eQTL 9.01e-01 0.0119 0.0953 0.64 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 350091 sc-eQTL 5.21e-01 -0.0605 0.0942 0.64 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 254345 sc-eQTL 2.61e-01 -0.0903 0.0801 0.64 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -555244 sc-eQTL 3.90e-01 0.0802 0.0932 0.64 CD16_Mono LOneK1K
ENSG00000162607 USP1 602180 sc-eQTL 4.21e-03 -0.249 0.086 0.64 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 843628 sc-eQTL 9.32e-01 -0.00515 0.0598 0.64 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -554934 sc-eQTL 8.92e-01 0.00967 0.071 0.638 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -329098 sc-eQTL 2.36e-01 -0.101 0.0849 0.638 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 350091 sc-eQTL 1.71e-01 0.104 0.076 0.638 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 254345 sc-eQTL 2.64e-01 0.085 0.076 0.638 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -555244 sc-eQTL 4.10e-03 0.257 0.0886 0.638 NK_CD56dim LOneK1K
ENSG00000162607 USP1 602180 sc-eQTL 8.23e-01 0.0184 0.082 0.638 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -484895 sc-eQTL 1.61e-01 -0.14 0.0993 0.638 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -508605 8.35e-07 6.81e-07 3.14e-07 4.37e-07 1.18e-07 3.22e-07 6.18e-07 1.59e-07 6.27e-07 2.98e-07 9.46e-07 4.62e-07 1.02e-06 1.58e-07 3.27e-07 3.36e-07 4.3e-07 4.44e-07 5.72e-07 4.13e-07 2.09e-07 4.99e-07 3.45e-07 3.24e-07 1.28e-06 2.41e-07 4.37e-07 3.88e-07 4.33e-07 1.01e-06 4.61e-07 5.4e-08 5.89e-08 3.51e-07 3.46e-07 1.66e-07 3.64e-07 1.58e-07 7.63e-08 8.66e-09 4.63e-08 4.42e-07 6.94e-08 1.62e-07 1.99e-07 1.17e-07 1.45e-07 8.31e-08 1.07e-07