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Genes within 1Mb (chr1:63038225:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555186 sc-eQTL 8.13e-01 0.018 0.0762 0.556 B L1
ENSG00000088035 ALG6 -329350 sc-eQTL 8.45e-01 -0.0154 0.0789 0.556 B L1
ENSG00000116641 DOCK7 349839 sc-eQTL 6.59e-01 -0.0349 0.0789 0.556 B L1
ENSG00000125703 ATG4C 254093 sc-eQTL 7.69e-01 0.0161 0.0549 0.556 B L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 9.56e-01 -0.00478 0.0873 0.556 B L1
ENSG00000162607 USP1 601928 sc-eQTL 1.22e-01 0.117 0.0754 0.556 B L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 8.58e-01 0.016 0.0895 0.556 B L1
ENSG00000079739 PGM1 -555186 sc-eQTL 5.91e-01 0.0348 0.0646 0.556 CD4T L1
ENSG00000088035 ALG6 -329350 sc-eQTL 2.15e-01 0.0885 0.0711 0.556 CD4T L1
ENSG00000116641 DOCK7 349839 sc-eQTL 9.96e-01 -0.000406 0.0723 0.556 CD4T L1
ENSG00000125703 ATG4C 254093 sc-eQTL 5.50e-01 0.0349 0.0583 0.556 CD4T L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 3.08e-01 0.0844 0.0826 0.556 CD4T L1
ENSG00000162607 USP1 601928 sc-eQTL 9.08e-02 0.0955 0.0562 0.556 CD4T L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.78e-02 0.175 0.0734 0.556 CD4T L1
ENSG00000079739 PGM1 -555186 sc-eQTL 1.62e-02 0.171 0.0704 0.556 CD8T L1
ENSG00000088035 ALG6 -329350 sc-eQTL 5.23e-01 -0.0504 0.0786 0.556 CD8T L1
ENSG00000116641 DOCK7 349839 sc-eQTL 9.95e-01 -0.000514 0.0798 0.556 CD8T L1
ENSG00000125703 ATG4C 254093 sc-eQTL 1.81e-02 0.178 0.0748 0.556 CD8T L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 6.34e-01 0.0404 0.0847 0.556 CD8T L1
ENSG00000162607 USP1 601928 sc-eQTL 8.95e-01 0.00872 0.066 0.556 CD8T L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.13e-01 0.133 0.084 0.556 CD8T L1
ENSG00000079739 PGM1 -555186 sc-eQTL 8.95e-01 -0.0107 0.0807 0.554 DC L1
ENSG00000088035 ALG6 -329350 sc-eQTL 2.02e-01 0.106 0.083 0.554 DC L1
ENSG00000116641 DOCK7 349839 sc-eQTL 6.01e-01 -0.0446 0.0853 0.554 DC L1
ENSG00000125703 ATG4C 254093 sc-eQTL 6.54e-01 -0.03 0.0668 0.554 DC L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 4.67e-01 0.0679 0.0933 0.554 DC L1
ENSG00000162607 USP1 601928 sc-eQTL 3.45e-01 -0.077 0.0814 0.554 DC L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 3.83e-01 -0.0709 0.0811 0.554 DC L1
ENSG00000079739 PGM1 -555186 sc-eQTL 2.42e-02 0.178 0.0784 0.556 Mono L1
ENSG00000088035 ALG6 -329350 sc-eQTL 6.48e-01 0.0379 0.0828 0.556 Mono L1
ENSG00000116641 DOCK7 349839 sc-eQTL 7.46e-01 0.026 0.0801 0.556 Mono L1
ENSG00000125703 ATG4C 254093 sc-eQTL 7.90e-01 -0.0144 0.0541 0.556 Mono L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 3.08e-01 0.0872 0.0853 0.556 Mono L1
ENSG00000162607 USP1 601928 sc-eQTL 4.11e-01 -0.0577 0.0701 0.556 Mono L1
ENSG00000240563 L1TD1 843376 sc-eQTL 5.61e-01 0.0381 0.0655 0.556 Mono L1
ENSG00000079739 PGM1 -555186 sc-eQTL 3.85e-01 0.0578 0.0664 0.556 NK L1
ENSG00000088035 ALG6 -329350 sc-eQTL 5.34e-01 -0.0486 0.0779 0.556 NK L1
ENSG00000116641 DOCK7 349839 sc-eQTL 2.12e-01 0.08 0.064 0.556 NK L1
ENSG00000125703 ATG4C 254093 sc-eQTL 3.43e-01 0.0654 0.0688 0.556 NK L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 1.45e-01 0.125 0.0853 0.556 NK L1
ENSG00000162607 USP1 601928 sc-eQTL 3.42e-01 0.0728 0.0764 0.556 NK L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 3.45e-02 -0.196 0.0921 0.556 NK L1
ENSG00000079739 PGM1 -555186 sc-eQTL 6.67e-01 0.0329 0.0764 0.556 Other_T L1
ENSG00000088035 ALG6 -329350 sc-eQTL 2.37e-01 0.0907 0.0765 0.556 Other_T L1
ENSG00000116641 DOCK7 349839 sc-eQTL 1.87e-01 -0.103 0.0781 0.556 Other_T L1
ENSG00000125703 ATG4C 254093 sc-eQTL 5.17e-02 0.132 0.0672 0.556 Other_T L1
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.24e-01 -0.0383 0.0601 0.556 Other_T L1
ENSG00000162607 USP1 601928 sc-eQTL 4.54e-01 -0.0391 0.0521 0.556 Other_T L1
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.05e-01 -0.118 0.0925 0.556 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555186 sc-eQTL 1.14e-01 0.156 0.0984 0.551 B_Activated L2
ENSG00000088035 ALG6 -329350 sc-eQTL 5.51e-01 -0.0567 0.0949 0.551 B_Activated L2
ENSG00000116641 DOCK7 349839 sc-eQTL 5.07e-01 0.0588 0.0884 0.551 B_Activated L2
ENSG00000125703 ATG4C 254093 sc-eQTL 3.16e-01 -0.0933 0.0928 0.551 B_Activated L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 8.22e-01 0.0205 0.0909 0.551 B_Activated L2
ENSG00000162607 USP1 601928 sc-eQTL 4.43e-01 0.0756 0.0984 0.551 B_Activated L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 7.10e-02 0.155 0.0852 0.551 B_Activated L2
ENSG00000079739 PGM1 -555186 sc-eQTL 3.65e-01 -0.0813 0.0895 0.554 B_Intermediate L2
ENSG00000088035 ALG6 -329350 sc-eQTL 2.73e-01 -0.1 0.0909 0.554 B_Intermediate L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.07e-01 -0.0101 0.087 0.554 B_Intermediate L2
ENSG00000125703 ATG4C 254093 sc-eQTL 3.97e-02 0.151 0.0729 0.554 B_Intermediate L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 7.52e-01 0.0278 0.0877 0.554 B_Intermediate L2
ENSG00000162607 USP1 601928 sc-eQTL 7.41e-01 -0.029 0.0876 0.554 B_Intermediate L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.96e-02 -0.202 0.0858 0.554 B_Intermediate L2
ENSG00000079739 PGM1 -555186 sc-eQTL 7.53e-01 -0.0277 0.088 0.552 B_Memory L2
ENSG00000088035 ALG6 -329350 sc-eQTL 8.34e-01 0.0188 0.0895 0.552 B_Memory L2
ENSG00000116641 DOCK7 349839 sc-eQTL 4.17e-01 -0.0682 0.0838 0.552 B_Memory L2
ENSG00000125703 ATG4C 254093 sc-eQTL 5.73e-03 -0.219 0.0784 0.552 B_Memory L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 1.96e-01 -0.118 0.091 0.552 B_Memory L2
ENSG00000162607 USP1 601928 sc-eQTL 3.23e-01 0.091 0.0919 0.552 B_Memory L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 5.86e-02 -0.171 0.0899 0.552 B_Memory L2
ENSG00000079739 PGM1 -555186 sc-eQTL 4.84e-01 0.0625 0.0891 0.556 B_Naive1 L2
ENSG00000088035 ALG6 -329350 sc-eQTL 3.84e-01 0.0781 0.0894 0.556 B_Naive1 L2
ENSG00000116641 DOCK7 349839 sc-eQTL 1.37e-01 -0.127 0.0854 0.556 B_Naive1 L2
ENSG00000125703 ATG4C 254093 sc-eQTL 5.58e-01 -0.0387 0.066 0.556 B_Naive1 L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 4.14e-01 0.0717 0.0876 0.556 B_Naive1 L2
ENSG00000162607 USP1 601928 sc-eQTL 4.58e-02 0.153 0.0764 0.556 B_Naive1 L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.04e-01 0.119 0.0932 0.556 B_Naive1 L2
ENSG00000079739 PGM1 -555186 sc-eQTL 7.97e-01 0.0227 0.0882 0.554 B_Naive2 L2
ENSG00000088035 ALG6 -329350 sc-eQTL 6.30e-01 0.0443 0.0919 0.554 B_Naive2 L2
ENSG00000116641 DOCK7 349839 sc-eQTL 8.93e-01 0.0119 0.0884 0.554 B_Naive2 L2
ENSG00000125703 ATG4C 254093 sc-eQTL 5.37e-01 0.0526 0.085 0.554 B_Naive2 L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 1.76e-02 -0.218 0.0911 0.554 B_Naive2 L2
ENSG00000162607 USP1 601928 sc-eQTL 3.02e-01 0.0906 0.0876 0.554 B_Naive2 L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.74e-01 0.1 0.0916 0.554 B_Naive2 L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.36e-01 -0.133 0.089 0.555 CD4_CTL L2
ENSG00000088035 ALG6 -329350 sc-eQTL 5.96e-01 0.0502 0.0945 0.555 CD4_CTL L2
ENSG00000116641 DOCK7 349839 sc-eQTL 1.35e-01 0.124 0.0822 0.555 CD4_CTL L2
ENSG00000125703 ATG4C 254093 sc-eQTL 4.57e-01 0.0637 0.0855 0.555 CD4_CTL L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 9.75e-01 0.00291 0.0915 0.555 CD4_CTL L2
ENSG00000162607 USP1 601928 sc-eQTL 8.07e-01 -0.0213 0.0871 0.555 CD4_CTL L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 8.39e-01 -0.0177 0.087 0.555 CD4_CTL L2
ENSG00000079739 PGM1 -555186 sc-eQTL 3.38e-01 0.0698 0.0727 0.556 CD4_Naive L2
ENSG00000088035 ALG6 -329350 sc-eQTL 2.09e-01 0.0993 0.0788 0.556 CD4_Naive L2
ENSG00000116641 DOCK7 349839 sc-eQTL 8.33e-01 -0.0165 0.0777 0.556 CD4_Naive L2
ENSG00000125703 ATG4C 254093 sc-eQTL 7.67e-01 -0.0204 0.0687 0.556 CD4_Naive L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.09e-01 0.0555 0.0839 0.556 CD4_Naive L2
ENSG00000162607 USP1 601928 sc-eQTL 3.90e-02 0.132 0.0635 0.556 CD4_Naive L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.56e-02 0.185 0.0824 0.556 CD4_Naive L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.92e-01 0.0985 0.0753 0.556 CD4_TCM L2
ENSG00000088035 ALG6 -329350 sc-eQTL 8.44e-01 0.0172 0.0878 0.556 CD4_TCM L2
ENSG00000116641 DOCK7 349839 sc-eQTL 6.14e-01 0.0393 0.0778 0.556 CD4_TCM L2
ENSG00000125703 ATG4C 254093 sc-eQTL 5.83e-01 0.0416 0.0757 0.556 CD4_TCM L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.26e-01 0.0567 0.0892 0.556 CD4_TCM L2
ENSG00000162607 USP1 601928 sc-eQTL 9.10e-01 0.00828 0.0732 0.556 CD4_TCM L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.63e-01 0.0966 0.0862 0.556 CD4_TCM L2
ENSG00000079739 PGM1 -555186 sc-eQTL 3.04e-01 -0.0914 0.0887 0.556 CD4_TEM L2
ENSG00000088035 ALG6 -329350 sc-eQTL 5.79e-01 0.0496 0.0893 0.556 CD4_TEM L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.51e-01 0.00533 0.0871 0.556 CD4_TEM L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.65e-01 0.0144 0.0846 0.556 CD4_TEM L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 6.72e-02 0.159 0.0867 0.556 CD4_TEM L2
ENSG00000162607 USP1 601928 sc-eQTL 2.05e-01 0.105 0.0825 0.556 CD4_TEM L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 5.29e-01 0.057 0.0904 0.556 CD4_TEM L2
ENSG00000079739 PGM1 -555186 sc-eQTL 4.13e-01 0.0668 0.0814 0.556 CD8_CTL L2
ENSG00000088035 ALG6 -329350 sc-eQTL 8.55e-01 -0.0159 0.0867 0.556 CD8_CTL L2
ENSG00000116641 DOCK7 349839 sc-eQTL 5.11e-01 -0.0542 0.0822 0.556 CD8_CTL L2
ENSG00000125703 ATG4C 254093 sc-eQTL 1.84e-01 0.116 0.0872 0.556 CD8_CTL L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.60e-01 0.0532 0.091 0.556 CD8_CTL L2
ENSG00000162607 USP1 601928 sc-eQTL 9.94e-01 -0.000651 0.0816 0.556 CD8_CTL L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 3.23e-01 0.0922 0.0931 0.556 CD8_CTL L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.34e-03 0.261 0.0802 0.556 CD8_Naive L2
ENSG00000088035 ALG6 -329350 sc-eQTL 5.70e-01 0.0484 0.085 0.556 CD8_Naive L2
ENSG00000116641 DOCK7 349839 sc-eQTL 1.98e-01 0.113 0.0876 0.556 CD8_Naive L2
ENSG00000125703 ATG4C 254093 sc-eQTL 2.55e-03 0.252 0.0826 0.556 CD8_Naive L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 1.32e-01 0.129 0.0851 0.556 CD8_Naive L2
ENSG00000162607 USP1 601928 sc-eQTL 3.77e-01 0.0639 0.0722 0.556 CD8_Naive L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.94e-01 0.0845 0.0804 0.556 CD8_Naive L2
ENSG00000079739 PGM1 -555186 sc-eQTL 8.37e-01 -0.0193 0.0936 0.565 CD8_TCM L2
ENSG00000088035 ALG6 -329350 sc-eQTL 4.89e-01 -0.0657 0.0947 0.565 CD8_TCM L2
ENSG00000116641 DOCK7 349839 sc-eQTL 2.78e-01 -0.1 0.0922 0.565 CD8_TCM L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.26e-01 0.0209 0.0946 0.565 CD8_TCM L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 2.72e-02 -0.202 0.0908 0.565 CD8_TCM L2
ENSG00000162607 USP1 601928 sc-eQTL 2.08e-01 0.111 0.0881 0.565 CD8_TCM L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 3.46e-01 0.0882 0.0935 0.565 CD8_TCM L2
ENSG00000079739 PGM1 -555186 sc-eQTL 3.74e-01 0.081 0.0908 0.557 CD8_TEM L2
ENSG00000088035 ALG6 -329350 sc-eQTL 6.15e-01 -0.046 0.0913 0.557 CD8_TEM L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.20e-01 -0.00891 0.0886 0.557 CD8_TEM L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.29e-01 -0.0184 0.0851 0.557 CD8_TEM L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 7.78e-01 -0.026 0.0921 0.557 CD8_TEM L2
ENSG00000162607 USP1 601928 sc-eQTL 8.23e-01 0.0197 0.0879 0.557 CD8_TEM L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.54e-01 0.127 0.0889 0.557 CD8_TEM L2
ENSG00000079739 PGM1 -555186 sc-eQTL 5.28e-01 -0.0554 0.0877 0.556 MAIT L2
ENSG00000088035 ALG6 -329350 sc-eQTL 8.97e-02 0.147 0.0863 0.556 MAIT L2
ENSG00000116641 DOCK7 349839 sc-eQTL 5.78e-01 0.0464 0.0832 0.556 MAIT L2
ENSG00000125703 ATG4C 254093 sc-eQTL 3.27e-02 0.187 0.0868 0.556 MAIT L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 9.08e-01 0.0102 0.0879 0.556 MAIT L2
ENSG00000162607 USP1 601928 sc-eQTL 9.11e-01 0.0098 0.0872 0.556 MAIT L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.20e-01 -0.111 0.0902 0.556 MAIT L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.95e-01 0.113 0.0871 0.56 NK_CD56bright L2
ENSG00000088035 ALG6 -329350 sc-eQTL 7.40e-01 0.0298 0.0896 0.56 NK_CD56bright L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.11e-01 -0.00869 0.0777 0.56 NK_CD56bright L2
ENSG00000125703 ATG4C 254093 sc-eQTL 9.34e-01 0.0072 0.0868 0.56 NK_CD56bright L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.29e-01 -0.0569 0.0902 0.56 NK_CD56bright L2
ENSG00000162607 USP1 601928 sc-eQTL 3.31e-01 -0.0905 0.0929 0.56 NK_CD56bright L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 3.92e-02 -0.183 0.0882 0.56 NK_CD56bright L2
ENSG00000079739 PGM1 -555186 sc-eQTL 5.59e-01 0.0402 0.0687 0.556 NK_CD56dim L2
ENSG00000088035 ALG6 -329350 sc-eQTL 4.36e-01 -0.068 0.087 0.556 NK_CD56dim L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.81e-01 0.00181 0.0758 0.556 NK_CD56dim L2
ENSG00000125703 ATG4C 254093 sc-eQTL 6.72e-01 -0.0327 0.077 0.556 NK_CD56dim L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 2.37e-01 0.104 0.0874 0.556 NK_CD56dim L2
ENSG00000162607 USP1 601928 sc-eQTL 1.90e-01 0.111 0.0847 0.556 NK_CD56dim L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 2.74e-01 -0.104 0.0944 0.556 NK_CD56dim L2
ENSG00000079739 PGM1 -555186 sc-eQTL 7.87e-01 0.0259 0.0956 0.546 NK_HLA L2
ENSG00000088035 ALG6 -329350 sc-eQTL 1.76e-01 0.134 0.0987 0.546 NK_HLA L2
ENSG00000116641 DOCK7 349839 sc-eQTL 8.68e-01 -0.0126 0.0758 0.546 NK_HLA L2
ENSG00000125703 ATG4C 254093 sc-eQTL 9.97e-01 -0.000279 0.0882 0.546 NK_HLA L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 3.93e-01 0.0791 0.0924 0.546 NK_HLA L2
ENSG00000162607 USP1 601928 sc-eQTL 3.45e-02 -0.204 0.0958 0.546 NK_HLA L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 4.19e-02 -0.179 0.0873 0.546 NK_HLA L2
ENSG00000079739 PGM1 -555186 sc-eQTL 8.64e-01 0.0133 0.0773 0.556 NK_cytokine L2
ENSG00000088035 ALG6 -329350 sc-eQTL 3.41e-01 -0.0832 0.0872 0.556 NK_cytokine L2
ENSG00000116641 DOCK7 349839 sc-eQTL 2.59e-01 0.0913 0.0807 0.556 NK_cytokine L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.50e-02 0.142 0.0822 0.556 NK_cytokine L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 8.48e-02 0.148 0.0852 0.556 NK_cytokine L2
ENSG00000162607 USP1 601928 sc-eQTL 3.84e-01 0.0785 0.09 0.556 NK_cytokine L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 5.62e-01 -0.053 0.0913 0.556 NK_cytokine L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.90e-01 0.14 0.106 0.533 PB L2
ENSG00000088035 ALG6 -329350 sc-eQTL 7.13e-01 0.0415 0.112 0.533 PB L2
ENSG00000116641 DOCK7 349839 sc-eQTL 7.93e-01 0.0316 0.12 0.533 PB L2
ENSG00000125703 ATG4C 254093 sc-eQTL 9.31e-01 -0.00908 0.105 0.533 PB L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 8.68e-01 -0.0174 0.105 0.533 PB L2
ENSG00000162607 USP1 601928 sc-eQTL 9.73e-01 0.0035 0.104 0.533 PB L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 5.68e-01 0.0657 0.115 0.533 PB L2
ENSG00000079739 PGM1 -555186 sc-eQTL 5.15e-01 0.0542 0.0831 0.554 Pro_T L2
ENSG00000088035 ALG6 -329350 sc-eQTL 4.07e-01 -0.0702 0.0845 0.554 Pro_T L2
ENSG00000116641 DOCK7 349839 sc-eQTL 3.01e-01 -0.0879 0.0847 0.554 Pro_T L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.24e-01 -0.0166 0.0743 0.554 Pro_T L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.99e-01 -0.0393 0.0745 0.554 Pro_T L2
ENSG00000162607 USP1 601928 sc-eQTL 4.49e-02 0.102 0.0508 0.554 Pro_T L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 7.43e-01 0.0284 0.0866 0.554 Pro_T L2
ENSG00000079739 PGM1 -555186 sc-eQTL 2.49e-01 0.099 0.0857 0.556 Treg L2
ENSG00000088035 ALG6 -329350 sc-eQTL 4.70e-01 0.0665 0.0918 0.556 Treg L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.70e-01 -0.00313 0.0844 0.556 Treg L2
ENSG00000125703 ATG4C 254093 sc-eQTL 3.34e-01 0.0833 0.086 0.556 Treg L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 6.27e-01 0.0439 0.0902 0.556 Treg L2
ENSG00000162607 USP1 601928 sc-eQTL 2.88e-01 0.0927 0.0871 0.556 Treg L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 4.74e-01 -0.0619 0.0862 0.556 Treg L2
ENSG00000079739 PGM1 -555186 sc-eQTL 9.94e-01 0.000675 0.0868 0.554 cDC L2
ENSG00000088035 ALG6 -329350 sc-eQTL 9.78e-01 -0.00243 0.088 0.554 cDC L2
ENSG00000116641 DOCK7 349839 sc-eQTL 5.01e-01 0.0581 0.0862 0.554 cDC L2
ENSG00000125703 ATG4C 254093 sc-eQTL 4.79e-01 0.0531 0.0749 0.554 cDC L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.33e-01 0.0593 0.0949 0.554 cDC L2
ENSG00000162607 USP1 601928 sc-eQTL 1.39e-01 -0.125 0.0841 0.554 cDC L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 8.23e-02 0.132 0.0757 0.554 cDC L2
ENSG00000079739 PGM1 -555186 sc-eQTL 6.63e-02 0.151 0.0818 0.556 cMono_IL1B L2
ENSG00000088035 ALG6 -329350 sc-eQTL 6.17e-01 -0.0413 0.0825 0.556 cMono_IL1B L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.14e-01 0.00946 0.087 0.556 cMono_IL1B L2
ENSG00000125703 ATG4C 254093 sc-eQTL 8.94e-01 0.00815 0.0612 0.556 cMono_IL1B L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 3.50e-01 0.081 0.0865 0.556 cMono_IL1B L2
ENSG00000162607 USP1 601928 sc-eQTL 4.39e-01 0.0591 0.0764 0.556 cMono_IL1B L2
ENSG00000240563 L1TD1 843376 sc-eQTL 8.72e-01 -0.0124 0.0768 0.556 cMono_IL1B L2
ENSG00000079739 PGM1 -555186 sc-eQTL 4.92e-02 0.18 0.0912 0.556 cMono_S100A L2
ENSG00000088035 ALG6 -329350 sc-eQTL 1.31e-01 0.141 0.0928 0.556 cMono_S100A L2
ENSG00000116641 DOCK7 349839 sc-eQTL 5.50e-01 0.0517 0.0864 0.556 cMono_S100A L2
ENSG00000125703 ATG4C 254093 sc-eQTL 9.76e-01 -0.00224 0.0749 0.556 cMono_S100A L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 8.41e-01 0.017 0.0845 0.556 cMono_S100A L2
ENSG00000162607 USP1 601928 sc-eQTL 6.04e-01 -0.0451 0.0869 0.556 cMono_S100A L2
ENSG00000240563 L1TD1 843376 sc-eQTL 7.50e-01 0.023 0.0723 0.556 cMono_S100A L2
ENSG00000079739 PGM1 -555186 sc-eQTL 1.04e-01 0.165 0.101 0.552 gdT L2
ENSG00000088035 ALG6 -329350 sc-eQTL 9.14e-01 -0.0117 0.108 0.552 gdT L2
ENSG00000116641 DOCK7 349839 sc-eQTL 8.27e-01 -0.0233 0.106 0.552 gdT L2
ENSG00000125703 ATG4C 254093 sc-eQTL 9.99e-02 0.167 0.101 0.552 gdT L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.06e-01 0.0719 0.108 0.552 gdT L2
ENSG00000162607 USP1 601928 sc-eQTL 6.99e-01 0.0396 0.102 0.552 gdT L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.39e-01 -0.157 0.105 0.552 gdT L2
ENSG00000079739 PGM1 -555186 sc-eQTL 2.99e-02 0.197 0.0902 0.553 intMono L2
ENSG00000088035 ALG6 -329350 sc-eQTL 6.02e-01 -0.0444 0.085 0.553 intMono L2
ENSG00000116641 DOCK7 349839 sc-eQTL 8.40e-01 -0.0176 0.0868 0.553 intMono L2
ENSG00000125703 ATG4C 254093 sc-eQTL 6.10e-02 -0.155 0.0822 0.553 intMono L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.16e-01 -0.0594 0.0912 0.553 intMono L2
ENSG00000162607 USP1 601928 sc-eQTL 1.02e-01 -0.152 0.0922 0.553 intMono L2
ENSG00000240563 L1TD1 843376 sc-eQTL 3.46e-01 -0.0644 0.0682 0.553 intMono L2
ENSG00000079739 PGM1 -555186 sc-eQTL 2.48e-01 -0.0973 0.0839 0.557 ncMono L2
ENSG00000088035 ALG6 -329350 sc-eQTL 8.23e-01 -0.0208 0.0925 0.557 ncMono L2
ENSG00000116641 DOCK7 349839 sc-eQTL 9.37e-01 0.00725 0.0911 0.557 ncMono L2
ENSG00000125703 ATG4C 254093 sc-eQTL 2.44e-01 -0.0991 0.0848 0.557 ncMono L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 2.27e-01 0.107 0.0887 0.557 ncMono L2
ENSG00000162607 USP1 601928 sc-eQTL 3.15e-01 -0.0914 0.0907 0.557 ncMono L2
ENSG00000240563 L1TD1 843376 sc-eQTL 6.09e-01 0.033 0.0644 0.557 ncMono L2
ENSG00000079739 PGM1 -555186 sc-eQTL 3.70e-01 0.0886 0.0986 0.542 pDC L2
ENSG00000088035 ALG6 -329350 sc-eQTL 1.71e-01 0.132 0.0957 0.542 pDC L2
ENSG00000116641 DOCK7 349839 sc-eQTL 6.00e-02 -0.184 0.0973 0.542 pDC L2
ENSG00000125703 ATG4C 254093 sc-eQTL 7.05e-01 0.0335 0.0882 0.542 pDC L2
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.95e-01 0.0528 0.099 0.542 pDC L2
ENSG00000162607 USP1 601928 sc-eQTL 6.10e-01 0.0516 0.101 0.542 pDC L2
ENSG00000203965 EFCAB7 -485147 sc-eQTL 4.66e-01 -0.0639 0.0875 0.542 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555186 sc-eQTL 4.50e-01 -0.0631 0.0834 0.556 B_Memory LOneK1K
ENSG00000088035 ALG6 -329350 sc-eQTL 3.34e-01 -0.0893 0.0922 0.556 B_Memory LOneK1K
ENSG00000116641 DOCK7 349839 sc-eQTL 9.37e-01 -0.00632 0.0802 0.556 B_Memory LOneK1K
ENSG00000125703 ATG4C 254093 sc-eQTL 5.80e-01 -0.0359 0.0648 0.556 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -555496 sc-eQTL 7.73e-01 -0.0245 0.0852 0.556 B_Memory LOneK1K
ENSG00000162607 USP1 601928 sc-eQTL 5.17e-01 0.0536 0.0826 0.556 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.20e-01 -0.138 0.0882 0.556 B_Memory LOneK1K
ENSG00000079739 PGM1 -555186 sc-eQTL 4.38e-01 0.0675 0.0869 0.556 B_Naive LOneK1K
ENSG00000088035 ALG6 -329350 sc-eQTL 3.79e-01 0.0788 0.0894 0.556 B_Naive LOneK1K
ENSG00000116641 DOCK7 349839 sc-eQTL 4.44e-01 -0.0641 0.0836 0.556 B_Naive LOneK1K
ENSG00000125703 ATG4C 254093 sc-eQTL 9.25e-01 -0.00604 0.0639 0.556 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -555496 sc-eQTL 7.97e-01 -0.0232 0.0903 0.556 B_Naive LOneK1K
ENSG00000162607 USP1 601928 sc-eQTL 6.01e-02 0.145 0.0769 0.556 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -485147 sc-eQTL 1.54e-01 0.129 0.0903 0.556 B_Naive LOneK1K
ENSG00000079739 PGM1 -555186 sc-eQTL 1.56e-02 0.205 0.084 0.556 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -329350 sc-eQTL 6.86e-01 0.0334 0.0824 0.556 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 349839 sc-eQTL 6.27e-01 0.0404 0.083 0.556 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 254093 sc-eQTL 7.85e-01 0.0157 0.0574 0.556 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -555496 sc-eQTL 4.75e-01 0.0607 0.0848 0.556 CD14_Mono LOneK1K
ENSG00000162607 USP1 601928 sc-eQTL 8.76e-01 -0.0113 0.0725 0.556 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 843376 sc-eQTL 4.66e-01 0.0573 0.0785 0.556 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -555186 sc-eQTL 7.30e-01 0.0277 0.0802 0.556 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -329350 sc-eQTL 9.02e-01 0.0113 0.0911 0.556 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 349839 sc-eQTL 6.57e-01 -0.0401 0.0901 0.556 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 254093 sc-eQTL 2.37e-01 -0.0909 0.0766 0.556 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -555496 sc-eQTL 5.27e-01 0.0565 0.0892 0.556 CD16_Mono LOneK1K
ENSG00000162607 USP1 601928 sc-eQTL 4.64e-02 -0.166 0.0831 0.556 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 843376 sc-eQTL 9.49e-01 0.0037 0.0572 0.556 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -555186 sc-eQTL 6.70e-01 0.0289 0.0676 0.556 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -329350 sc-eQTL 4.54e-01 -0.0609 0.0811 0.556 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 349839 sc-eQTL 5.26e-01 0.0461 0.0727 0.556 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 254093 sc-eQTL 3.18e-01 0.0725 0.0725 0.556 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -555496 sc-eQTL 1.30e-01 0.13 0.0856 0.556 NK_CD56dim LOneK1K
ENSG00000162607 USP1 601928 sc-eQTL 4.27e-01 0.0622 0.078 0.556 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -485147 sc-eQTL 6.93e-02 -0.172 0.0943 0.556 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000240563 L1TD1 843376 eQTL 0.0243 0.0912 0.0405 0.0 0.0 0.404

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -329350 1.34e-06 9.39e-07 3.49e-07 6.06e-07 2.46e-07 4.82e-07 1.18e-06 3.45e-07 1.13e-06 3.83e-07 1.38e-06 5.93e-07 1.83e-06 2.57e-07 4.38e-07 7.13e-07 8.26e-07 5.55e-07 5.88e-07 5.62e-07 4.39e-07 1.2e-06 8.26e-07 5.6e-07 1.88e-06 3.28e-07 6.7e-07 5.8e-07 1.17e-06 1.23e-06 5.66e-07 4.87e-08 2.33e-07 4.51e-07 4.25e-07 4.09e-07 4.26e-07 1.54e-07 2.21e-07 4.17e-08 2.75e-07 1.53e-06 5e-08 4.12e-08 1.93e-07 8.9e-08 2.21e-07 8.37e-08 9.59e-08