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Genes within 1Mb (chr1:63037935:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555476 sc-eQTL 2.19e-01 -0.208 0.169 0.942 B L1
ENSG00000088035 ALG6 -329640 sc-eQTL 5.99e-01 0.0924 0.175 0.942 B L1
ENSG00000116641 DOCK7 349549 sc-eQTL 1.65e-01 -0.243 0.175 0.942 B L1
ENSG00000125703 ATG4C 253803 sc-eQTL 6.60e-01 -0.0537 0.122 0.942 B L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.63e-01 -0.0335 0.194 0.942 B L1
ENSG00000162607 USP1 601638 sc-eQTL 2.67e-02 -0.372 0.167 0.942 B L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 4.21e-01 -0.16 0.199 0.942 B L1
ENSG00000079739 PGM1 -555476 sc-eQTL 1.40e-01 0.214 0.145 0.942 CD4T L1
ENSG00000088035 ALG6 -329640 sc-eQTL 6.16e-01 0.0807 0.161 0.942 CD4T L1
ENSG00000116641 DOCK7 349549 sc-eQTL 7.86e-01 0.0442 0.163 0.942 CD4T L1
ENSG00000125703 ATG4C 253803 sc-eQTL 9.72e-01 0.00458 0.131 0.942 CD4T L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.38e-01 -0.0381 0.186 0.942 CD4T L1
ENSG00000162607 USP1 601638 sc-eQTL 9.21e-01 -0.0127 0.127 0.942 CD4T L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.78e-01 -0.00452 0.167 0.942 CD4T L1
ENSG00000079739 PGM1 -555476 sc-eQTL 9.23e-01 0.0154 0.159 0.942 CD8T L1
ENSG00000088035 ALG6 -329640 sc-eQTL 1.43e-01 0.257 0.175 0.942 CD8T L1
ENSG00000116641 DOCK7 349549 sc-eQTL 4.66e-01 0.13 0.178 0.942 CD8T L1
ENSG00000125703 ATG4C 253803 sc-eQTL 1.06e-01 0.273 0.168 0.942 CD8T L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 6.27e-01 -0.092 0.189 0.942 CD8T L1
ENSG00000162607 USP1 601638 sc-eQTL 6.44e-01 -0.0682 0.147 0.942 CD8T L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.46e-01 0.0127 0.189 0.942 CD8T L1
ENSG00000079739 PGM1 -555476 sc-eQTL 3.69e-01 -0.164 0.183 0.944 DC L1
ENSG00000088035 ALG6 -329640 sc-eQTL 5.56e-01 0.111 0.189 0.944 DC L1
ENSG00000116641 DOCK7 349549 sc-eQTL 4.03e-01 -0.162 0.193 0.944 DC L1
ENSG00000125703 ATG4C 253803 sc-eQTL 1.00e-01 0.249 0.15 0.944 DC L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 2.03e-01 -0.269 0.211 0.944 DC L1
ENSG00000162607 USP1 601638 sc-eQTL 7.06e-01 -0.0697 0.185 0.944 DC L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.11e-01 0.0684 0.184 0.944 DC L1
ENSG00000079739 PGM1 -555476 sc-eQTL 9.37e-01 -0.0138 0.174 0.942 Mono L1
ENSG00000088035 ALG6 -329640 sc-eQTL 8.16e-01 -0.0423 0.181 0.942 Mono L1
ENSG00000116641 DOCK7 349549 sc-eQTL 5.95e-01 -0.0932 0.175 0.942 Mono L1
ENSG00000125703 ATG4C 253803 sc-eQTL 3.96e-01 0.101 0.118 0.942 Mono L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 9.14e-01 -0.0202 0.187 0.942 Mono L1
ENSG00000162607 USP1 601638 sc-eQTL 7.86e-01 0.0418 0.154 0.942 Mono L1
ENSG00000240563 L1TD1 843086 sc-eQTL 1.03e-01 0.234 0.143 0.942 Mono L1
ENSG00000079739 PGM1 -555476 sc-eQTL 9.93e-01 0.00125 0.149 0.942 NK L1
ENSG00000088035 ALG6 -329640 sc-eQTL 9.39e-01 -0.0134 0.175 0.942 NK L1
ENSG00000116641 DOCK7 349549 sc-eQTL 9.73e-01 -0.0048 0.144 0.942 NK L1
ENSG00000125703 ATG4C 253803 sc-eQTL 9.26e-01 -0.0144 0.155 0.942 NK L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.82e-01 -0.168 0.192 0.942 NK L1
ENSG00000162607 USP1 601638 sc-eQTL 6.10e-02 0.321 0.17 0.942 NK L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 8.32e-01 -0.0443 0.209 0.942 NK L1
ENSG00000079739 PGM1 -555476 sc-eQTL 5.42e-01 -0.103 0.168 0.942 Other_T L1
ENSG00000088035 ALG6 -329640 sc-eQTL 3.71e-01 0.152 0.169 0.942 Other_T L1
ENSG00000116641 DOCK7 349549 sc-eQTL 1.92e-01 -0.225 0.172 0.942 Other_T L1
ENSG00000125703 ATG4C 253803 sc-eQTL 2.28e-01 0.18 0.149 0.942 Other_T L1
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.12e-01 -0.134 0.132 0.942 Other_T L1
ENSG00000162607 USP1 601638 sc-eQTL 3.87e-01 0.0995 0.115 0.942 Other_T L1
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.40e-01 0.0153 0.205 0.942 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555476 sc-eQTL 4.54e-01 -0.173 0.231 0.944 B_Activated L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.14e-01 -0.112 0.222 0.944 B_Activated L2
ENSG00000116641 DOCK7 349549 sc-eQTL 3.05e-01 0.212 0.206 0.944 B_Activated L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.78e-01 -0.154 0.217 0.944 B_Activated L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.12e-01 0.214 0.212 0.944 B_Activated L2
ENSG00000162607 USP1 601638 sc-eQTL 2.39e-01 -0.271 0.229 0.944 B_Activated L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.13e-01 -0.074 0.201 0.944 B_Activated L2
ENSG00000079739 PGM1 -555476 sc-eQTL 4.28e-02 -0.412 0.202 0.942 B_Intermediate L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.28e-01 0.203 0.207 0.942 B_Intermediate L2
ENSG00000116641 DOCK7 349549 sc-eQTL 4.62e-01 -0.146 0.198 0.942 B_Intermediate L2
ENSG00000125703 ATG4C 253803 sc-eQTL 1.62e-01 0.234 0.167 0.942 B_Intermediate L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 6.71e-01 0.0849 0.2 0.942 B_Intermediate L2
ENSG00000162607 USP1 601638 sc-eQTL 8.67e-01 -0.0334 0.199 0.942 B_Intermediate L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 6.46e-01 -0.0909 0.198 0.942 B_Intermediate L2
ENSG00000079739 PGM1 -555476 sc-eQTL 2.76e-01 0.216 0.197 0.942 B_Memory L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.72e-01 0.18 0.201 0.942 B_Memory L2
ENSG00000116641 DOCK7 349549 sc-eQTL 9.57e-01 -0.0101 0.189 0.942 B_Memory L2
ENSG00000125703 ATG4C 253803 sc-eQTL 5.40e-01 -0.11 0.179 0.942 B_Memory L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.28e-01 0.201 0.205 0.942 B_Memory L2
ENSG00000162607 USP1 601638 sc-eQTL 7.07e-02 -0.373 0.205 0.942 B_Memory L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.39e-01 0.0678 0.203 0.942 B_Memory L2
ENSG00000079739 PGM1 -555476 sc-eQTL 9.00e-01 -0.0253 0.201 0.942 B_Naive1 L2
ENSG00000088035 ALG6 -329640 sc-eQTL 4.90e-01 -0.139 0.202 0.942 B_Naive1 L2
ENSG00000116641 DOCK7 349549 sc-eQTL 1.03e-01 -0.315 0.192 0.942 B_Naive1 L2
ENSG00000125703 ATG4C 253803 sc-eQTL 2.12e-01 -0.186 0.148 0.942 B_Naive1 L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 7.43e-01 0.0647 0.198 0.942 B_Naive1 L2
ENSG00000162607 USP1 601638 sc-eQTL 6.23e-01 -0.0855 0.174 0.942 B_Naive1 L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.51e-01 -0.067 0.211 0.942 B_Naive1 L2
ENSG00000079739 PGM1 -555476 sc-eQTL 2.97e-01 -0.203 0.194 0.942 B_Naive2 L2
ENSG00000088035 ALG6 -329640 sc-eQTL 1.74e-01 0.276 0.202 0.942 B_Naive2 L2
ENSG00000116641 DOCK7 349549 sc-eQTL 6.17e-01 -0.0978 0.195 0.942 B_Naive2 L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.04e-01 -0.157 0.188 0.942 B_Naive2 L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 2.47e-01 -0.236 0.203 0.942 B_Naive2 L2
ENSG00000162607 USP1 601638 sc-eQTL 5.38e-01 0.12 0.194 0.942 B_Naive2 L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 8.58e-01 -0.0363 0.203 0.942 B_Naive2 L2
ENSG00000079739 PGM1 -555476 sc-eQTL 4.41e-01 0.158 0.205 0.943 CD4_CTL L2
ENSG00000088035 ALG6 -329640 sc-eQTL 1.25e-01 0.333 0.216 0.943 CD4_CTL L2
ENSG00000116641 DOCK7 349549 sc-eQTL 6.32e-03 0.514 0.186 0.943 CD4_CTL L2
ENSG00000125703 ATG4C 253803 sc-eQTL 8.01e-01 0.0495 0.196 0.943 CD4_CTL L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 7.78e-01 0.0593 0.21 0.943 CD4_CTL L2
ENSG00000162607 USP1 601638 sc-eQTL 2.58e-01 0.226 0.199 0.943 CD4_CTL L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 8.43e-01 0.0395 0.2 0.943 CD4_CTL L2
ENSG00000079739 PGM1 -555476 sc-eQTL 1.22e-01 0.252 0.162 0.942 CD4_Naive L2
ENSG00000088035 ALG6 -329640 sc-eQTL 7.64e-01 -0.0531 0.177 0.942 CD4_Naive L2
ENSG00000116641 DOCK7 349549 sc-eQTL 9.21e-01 0.0173 0.174 0.942 CD4_Naive L2
ENSG00000125703 ATG4C 253803 sc-eQTL 9.25e-01 -0.0144 0.154 0.942 CD4_Naive L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 7.07e-01 -0.0707 0.188 0.942 CD4_Naive L2
ENSG00000162607 USP1 601638 sc-eQTL 6.31e-01 0.069 0.143 0.942 CD4_Naive L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.79e-01 -0.0523 0.186 0.942 CD4_Naive L2
ENSG00000079739 PGM1 -555476 sc-eQTL 9.90e-01 0.00203 0.169 0.942 CD4_TCM L2
ENSG00000088035 ALG6 -329640 sc-eQTL 4.48e-01 0.149 0.196 0.942 CD4_TCM L2
ENSG00000116641 DOCK7 349549 sc-eQTL 1.39e-01 0.257 0.173 0.942 CD4_TCM L2
ENSG00000125703 ATG4C 253803 sc-eQTL 5.22e-01 -0.108 0.169 0.942 CD4_TCM L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 6.91e-01 -0.0794 0.2 0.942 CD4_TCM L2
ENSG00000162607 USP1 601638 sc-eQTL 5.63e-01 -0.0947 0.164 0.942 CD4_TCM L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 2.12e-01 -0.241 0.192 0.942 CD4_TCM L2
ENSG00000079739 PGM1 -555476 sc-eQTL 6.72e-01 0.0851 0.201 0.942 CD4_TEM L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.93e-01 -0.0798 0.202 0.942 CD4_TEM L2
ENSG00000116641 DOCK7 349549 sc-eQTL 3.20e-01 -0.196 0.197 0.942 CD4_TEM L2
ENSG00000125703 ATG4C 253803 sc-eQTL 7.87e-01 -0.0517 0.191 0.942 CD4_TEM L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 5.95e-01 -0.105 0.197 0.942 CD4_TEM L2
ENSG00000162607 USP1 601638 sc-eQTL 3.91e-01 -0.161 0.187 0.942 CD4_TEM L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 4.81e-02 0.403 0.203 0.942 CD4_TEM L2
ENSG00000079739 PGM1 -555476 sc-eQTL 3.03e-01 -0.189 0.183 0.942 CD8_CTL L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.22e-01 0.0964 0.195 0.942 CD8_CTL L2
ENSG00000116641 DOCK7 349549 sc-eQTL 4.39e-01 -0.144 0.185 0.942 CD8_CTL L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.72e-01 -0.142 0.197 0.942 CD8_CTL L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.61e-01 0.188 0.205 0.942 CD8_CTL L2
ENSG00000162607 USP1 601638 sc-eQTL 2.36e-01 -0.218 0.183 0.942 CD8_CTL L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.91e-01 0.00231 0.21 0.942 CD8_CTL L2
ENSG00000079739 PGM1 -555476 sc-eQTL 4.13e-01 0.153 0.186 0.942 CD8_Naive L2
ENSG00000088035 ALG6 -329640 sc-eQTL 1.44e-01 0.282 0.192 0.942 CD8_Naive L2
ENSG00000116641 DOCK7 349549 sc-eQTL 5.75e-01 0.112 0.199 0.942 CD8_Naive L2
ENSG00000125703 ATG4C 253803 sc-eQTL 1.52e-01 0.274 0.191 0.942 CD8_Naive L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 6.94e-01 0.0764 0.194 0.942 CD8_Naive L2
ENSG00000162607 USP1 601638 sc-eQTL 7.33e-01 0.0559 0.164 0.942 CD8_Naive L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 5.11e-01 -0.12 0.183 0.942 CD8_Naive L2
ENSG00000079739 PGM1 -555476 sc-eQTL 5.81e-01 -0.111 0.201 0.942 CD8_TCM L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.95e-01 0.174 0.204 0.942 CD8_TCM L2
ENSG00000116641 DOCK7 349549 sc-eQTL 3.18e-01 -0.199 0.199 0.942 CD8_TCM L2
ENSG00000125703 ATG4C 253803 sc-eQTL 1.82e-01 0.271 0.203 0.942 CD8_TCM L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 2.30e-01 -0.238 0.197 0.942 CD8_TCM L2
ENSG00000162607 USP1 601638 sc-eQTL 7.38e-01 0.0639 0.19 0.942 CD8_TCM L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.55e-01 -0.0632 0.202 0.942 CD8_TCM L2
ENSG00000079739 PGM1 -555476 sc-eQTL 2.46e-01 -0.237 0.204 0.943 CD8_TEM L2
ENSG00000088035 ALG6 -329640 sc-eQTL 7.75e-01 0.0587 0.205 0.943 CD8_TEM L2
ENSG00000116641 DOCK7 349549 sc-eQTL 1.68e-01 0.274 0.198 0.943 CD8_TEM L2
ENSG00000125703 ATG4C 253803 sc-eQTL 2.54e-01 0.218 0.191 0.943 CD8_TEM L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 1.00e-01 -0.34 0.206 0.943 CD8_TEM L2
ENSG00000162607 USP1 601638 sc-eQTL 8.31e-01 -0.0421 0.198 0.943 CD8_TEM L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.65e-01 -0.0601 0.201 0.943 CD8_TEM L2
ENSG00000079739 PGM1 -555476 sc-eQTL 3.49e-01 -0.181 0.192 0.942 MAIT L2
ENSG00000088035 ALG6 -329640 sc-eQTL 2.30e-01 0.229 0.19 0.942 MAIT L2
ENSG00000116641 DOCK7 349549 sc-eQTL 7.63e-01 -0.0553 0.183 0.942 MAIT L2
ENSG00000125703 ATG4C 253803 sc-eQTL 7.63e-01 0.0581 0.193 0.942 MAIT L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.05e-01 0.0477 0.193 0.942 MAIT L2
ENSG00000162607 USP1 601638 sc-eQTL 4.46e-01 0.146 0.191 0.942 MAIT L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 8.53e-01 0.0368 0.199 0.942 MAIT L2
ENSG00000079739 PGM1 -555476 sc-eQTL 4.97e-01 0.134 0.197 0.944 NK_CD56bright L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.37e-01 0.194 0.202 0.944 NK_CD56bright L2
ENSG00000116641 DOCK7 349549 sc-eQTL 1.76e-01 -0.237 0.175 0.944 NK_CD56bright L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.09e-01 -0.162 0.196 0.944 NK_CD56bright L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 1.48e-01 -0.295 0.203 0.944 NK_CD56bright L2
ENSG00000162607 USP1 601638 sc-eQTL 6.04e-02 0.394 0.208 0.944 NK_CD56bright L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 4.96e-01 -0.137 0.201 0.944 NK_CD56bright L2
ENSG00000079739 PGM1 -555476 sc-eQTL 3.49e-01 0.145 0.155 0.944 NK_CD56dim L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.47e-01 -0.185 0.196 0.944 NK_CD56dim L2
ENSG00000116641 DOCK7 349549 sc-eQTL 7.75e-01 -0.0491 0.171 0.944 NK_CD56dim L2
ENSG00000125703 ATG4C 253803 sc-eQTL 2.62e-01 0.195 0.173 0.944 NK_CD56dim L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 7.37e-01 -0.0665 0.198 0.944 NK_CD56dim L2
ENSG00000162607 USP1 601638 sc-eQTL 4.45e-02 0.384 0.19 0.944 NK_CD56dim L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.35e-01 0.0175 0.214 0.944 NK_CD56dim L2
ENSG00000079739 PGM1 -555476 sc-eQTL 8.97e-02 -0.358 0.21 0.943 NK_HLA L2
ENSG00000088035 ALG6 -329640 sc-eQTL 4.15e-01 0.179 0.219 0.943 NK_HLA L2
ENSG00000116641 DOCK7 349549 sc-eQTL 8.32e-02 0.29 0.167 0.943 NK_HLA L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.02e-01 -0.164 0.195 0.943 NK_HLA L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 9.42e-01 0.015 0.205 0.943 NK_HLA L2
ENSG00000162607 USP1 601638 sc-eQTL 4.97e-03 -0.597 0.21 0.943 NK_HLA L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 5.22e-02 -0.378 0.193 0.943 NK_HLA L2
ENSG00000079739 PGM1 -555476 sc-eQTL 6.48e-01 -0.0779 0.17 0.944 NK_cytokine L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.27e-01 -0.189 0.192 0.944 NK_cytokine L2
ENSG00000116641 DOCK7 349549 sc-eQTL 7.82e-01 -0.0493 0.178 0.944 NK_cytokine L2
ENSG00000125703 ATG4C 253803 sc-eQTL 9.97e-01 -0.00079 0.182 0.944 NK_cytokine L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 9.27e-01 0.0172 0.189 0.944 NK_cytokine L2
ENSG00000162607 USP1 601638 sc-eQTL 5.40e-01 0.122 0.198 0.944 NK_cytokine L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 7.27e-01 0.0703 0.201 0.944 NK_cytokine L2
ENSG00000079739 PGM1 -555476 sc-eQTL 7.85e-01 0.061 0.223 0.933 PB L2
ENSG00000088035 ALG6 -329640 sc-eQTL 2.03e-02 0.537 0.228 0.933 PB L2
ENSG00000116641 DOCK7 349549 sc-eQTL 9.68e-01 -0.0102 0.25 0.933 PB L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.32e-01 0.171 0.217 0.933 PB L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 2.17e-01 -0.268 0.216 0.933 PB L2
ENSG00000162607 USP1 601638 sc-eQTL 5.90e-01 0.117 0.216 0.933 PB L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 3.04e-01 -0.246 0.238 0.933 PB L2
ENSG00000079739 PGM1 -555476 sc-eQTL 1.67e-01 -0.255 0.184 0.941 Pro_T L2
ENSG00000088035 ALG6 -329640 sc-eQTL 9.15e-01 -0.0201 0.188 0.941 Pro_T L2
ENSG00000116641 DOCK7 349549 sc-eQTL 1.62e-01 -0.263 0.188 0.941 Pro_T L2
ENSG00000125703 ATG4C 253803 sc-eQTL 9.89e-01 -0.00233 0.165 0.941 Pro_T L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.41e-01 -0.158 0.165 0.941 Pro_T L2
ENSG00000162607 USP1 601638 sc-eQTL 1.12e-01 0.181 0.113 0.941 Pro_T L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 3.01e-01 -0.199 0.192 0.941 Pro_T L2
ENSG00000079739 PGM1 -555476 sc-eQTL 4.34e-01 0.153 0.196 0.942 Treg L2
ENSG00000088035 ALG6 -329640 sc-eQTL 3.80e-01 0.184 0.209 0.942 Treg L2
ENSG00000116641 DOCK7 349549 sc-eQTL 5.01e-01 -0.13 0.192 0.942 Treg L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.03e-01 0.164 0.196 0.942 Treg L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 2.47e-02 0.459 0.203 0.942 Treg L2
ENSG00000162607 USP1 601638 sc-eQTL 8.14e-02 -0.346 0.197 0.942 Treg L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 5.38e-01 0.121 0.196 0.942 Treg L2
ENSG00000079739 PGM1 -555476 sc-eQTL 5.36e-01 -0.121 0.195 0.946 cDC L2
ENSG00000088035 ALG6 -329640 sc-eQTL 4.66e-01 0.144 0.198 0.946 cDC L2
ENSG00000116641 DOCK7 349549 sc-eQTL 4.84e-01 -0.136 0.194 0.946 cDC L2
ENSG00000125703 ATG4C 253803 sc-eQTL 8.09e-02 0.293 0.167 0.946 cDC L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 3.24e-01 -0.211 0.213 0.946 cDC L2
ENSG00000162607 USP1 601638 sc-eQTL 3.13e-01 -0.192 0.19 0.946 cDC L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 6.96e-01 0.0671 0.172 0.946 cDC L2
ENSG00000079739 PGM1 -555476 sc-eQTL 5.31e-01 0.113 0.18 0.942 cMono_IL1B L2
ENSG00000088035 ALG6 -329640 sc-eQTL 1.97e-01 -0.232 0.179 0.942 cMono_IL1B L2
ENSG00000116641 DOCK7 349549 sc-eQTL 4.29e-01 -0.15 0.19 0.942 cMono_IL1B L2
ENSG00000125703 ATG4C 253803 sc-eQTL 7.79e-01 -0.0374 0.134 0.942 cMono_IL1B L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.74e-01 -0.03 0.189 0.942 cMono_IL1B L2
ENSG00000162607 USP1 601638 sc-eQTL 6.16e-01 -0.0839 0.167 0.942 cMono_IL1B L2
ENSG00000240563 L1TD1 843086 sc-eQTL 7.12e-02 0.302 0.166 0.942 cMono_IL1B L2
ENSG00000079739 PGM1 -555476 sc-eQTL 5.21e-01 -0.129 0.201 0.942 cMono_S100A L2
ENSG00000088035 ALG6 -329640 sc-eQTL 2.09e-01 0.256 0.203 0.942 cMono_S100A L2
ENSG00000116641 DOCK7 349549 sc-eQTL 2.22e-01 -0.23 0.188 0.942 cMono_S100A L2
ENSG00000125703 ATG4C 253803 sc-eQTL 3.76e-01 0.145 0.163 0.942 cMono_S100A L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 5.32e-01 -0.115 0.184 0.942 cMono_S100A L2
ENSG00000162607 USP1 601638 sc-eQTL 7.71e-01 0.0554 0.19 0.942 cMono_S100A L2
ENSG00000240563 L1TD1 843086 sc-eQTL 8.71e-01 0.0256 0.158 0.942 cMono_S100A L2
ENSG00000079739 PGM1 -555476 sc-eQTL 2.83e-01 0.23 0.214 0.939 gdT L2
ENSG00000088035 ALG6 -329640 sc-eQTL 1.40e-01 0.337 0.227 0.939 gdT L2
ENSG00000116641 DOCK7 349549 sc-eQTL 3.14e-01 -0.226 0.224 0.939 gdT L2
ENSG00000125703 ATG4C 253803 sc-eQTL 5.83e-03 0.584 0.209 0.939 gdT L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 4.45e-02 0.455 0.224 0.939 gdT L2
ENSG00000162607 USP1 601638 sc-eQTL 8.91e-01 -0.0297 0.215 0.939 gdT L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 1.55e-01 0.318 0.222 0.939 gdT L2
ENSG00000079739 PGM1 -555476 sc-eQTL 3.94e-01 0.179 0.209 0.94 intMono L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.97e-01 0.0761 0.195 0.94 intMono L2
ENSG00000116641 DOCK7 349549 sc-eQTL 2.08e-01 0.251 0.199 0.94 intMono L2
ENSG00000125703 ATG4C 253803 sc-eQTL 1.47e-01 0.276 0.189 0.94 intMono L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 9.54e-01 0.012 0.21 0.94 intMono L2
ENSG00000162607 USP1 601638 sc-eQTL 9.33e-01 -0.018 0.213 0.94 intMono L2
ENSG00000240563 L1TD1 843086 sc-eQTL 2.28e-01 -0.189 0.156 0.94 intMono L2
ENSG00000079739 PGM1 -555476 sc-eQTL 8.09e-01 -0.0456 0.189 0.943 ncMono L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.19e-01 -0.103 0.207 0.943 ncMono L2
ENSG00000116641 DOCK7 349549 sc-eQTL 6.60e-01 0.0897 0.204 0.943 ncMono L2
ENSG00000125703 ATG4C 253803 sc-eQTL 4.35e-01 0.149 0.19 0.943 ncMono L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.35e-01 -0.0416 0.199 0.943 ncMono L2
ENSG00000162607 USP1 601638 sc-eQTL 2.77e-01 0.221 0.203 0.943 ncMono L2
ENSG00000240563 L1TD1 843086 sc-eQTL 3.83e-01 0.126 0.144 0.943 ncMono L2
ENSG00000079739 PGM1 -555476 sc-eQTL 2.55e-01 -0.247 0.216 0.946 pDC L2
ENSG00000088035 ALG6 -329640 sc-eQTL 6.07e-01 0.109 0.211 0.946 pDC L2
ENSG00000116641 DOCK7 349549 sc-eQTL 4.17e-01 -0.175 0.215 0.946 pDC L2
ENSG00000125703 ATG4C 253803 sc-eQTL 1.80e-01 0.26 0.193 0.946 pDC L2
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.65e-01 0.037 0.217 0.946 pDC L2
ENSG00000162607 USP1 601638 sc-eQTL 9.36e-01 0.0178 0.222 0.946 pDC L2
ENSG00000203965 EFCAB7 -485437 sc-eQTL 4.65e-01 0.141 0.192 0.946 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -555476 sc-eQTL 3.11e-01 -0.195 0.192 0.942 B_Memory LOneK1K
ENSG00000088035 ALG6 -329640 sc-eQTL 2.03e-01 0.271 0.212 0.942 B_Memory LOneK1K
ENSG00000116641 DOCK7 349549 sc-eQTL 8.49e-01 -0.0353 0.185 0.942 B_Memory LOneK1K
ENSG00000125703 ATG4C 253803 sc-eQTL 6.38e-01 0.0704 0.15 0.942 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.66e-02 0.336 0.195 0.942 B_Memory LOneK1K
ENSG00000162607 USP1 601638 sc-eQTL 1.12e-01 -0.303 0.19 0.942 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -485437 sc-eQTL 8.42e-01 0.0409 0.205 0.942 B_Memory LOneK1K
ENSG00000079739 PGM1 -555476 sc-eQTL 4.40e-01 -0.151 0.195 0.942 B_Naive LOneK1K
ENSG00000088035 ALG6 -329640 sc-eQTL 9.63e-01 -0.00928 0.201 0.942 B_Naive LOneK1K
ENSG00000116641 DOCK7 349549 sc-eQTL 1.17e-01 -0.294 0.187 0.942 B_Naive LOneK1K
ENSG00000125703 ATG4C 253803 sc-eQTL 1.86e-01 -0.189 0.143 0.942 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -555786 sc-eQTL 6.79e-01 -0.084 0.202 0.942 B_Naive LOneK1K
ENSG00000162607 USP1 601638 sc-eQTL 5.60e-01 -0.102 0.174 0.942 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -485437 sc-eQTL 5.66e-01 -0.117 0.203 0.942 B_Naive LOneK1K
ENSG00000079739 PGM1 -555476 sc-eQTL 9.10e-01 0.0209 0.185 0.942 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -329640 sc-eQTL 7.95e-01 -0.0466 0.179 0.942 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 349549 sc-eQTL 1.76e-01 -0.243 0.179 0.942 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 253803 sc-eQTL 7.59e-01 0.0381 0.124 0.942 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -555786 sc-eQTL 5.53e-01 -0.109 0.184 0.942 CD14_Mono LOneK1K
ENSG00000162607 USP1 601638 sc-eQTL 8.11e-01 -0.0377 0.157 0.942 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 843086 sc-eQTL 1.36e-01 0.254 0.17 0.942 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -555476 sc-eQTL 7.77e-01 0.051 0.18 0.942 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -329640 sc-eQTL 6.75e-01 0.0857 0.204 0.942 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 349549 sc-eQTL 1.13e-01 0.32 0.201 0.942 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 253803 sc-eQTL 6.79e-01 0.0714 0.172 0.942 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -555786 sc-eQTL 8.08e-01 -0.0486 0.2 0.942 CD16_Mono LOneK1K
ENSG00000162607 USP1 601638 sc-eQTL 2.44e-01 0.219 0.187 0.942 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 843086 sc-eQTL 7.98e-01 0.0328 0.128 0.942 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -555476 sc-eQTL 9.35e-01 -0.0123 0.151 0.944 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -329640 sc-eQTL 4.20e-01 -0.147 0.182 0.944 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 349549 sc-eQTL 9.40e-01 0.0122 0.163 0.944 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 253803 sc-eQTL 9.53e-01 -0.00965 0.163 0.944 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -555786 sc-eQTL 4.24e-01 -0.154 0.192 0.944 NK_CD56dim LOneK1K
ENSG00000162607 USP1 601638 sc-eQTL 2.28e-01 0.211 0.174 0.944 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -485437 sc-eQTL 9.01e-01 0.0265 0.213 0.944 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000088035 ALG6 -329640 eQTL 0.00645 0.0703 0.0257 0.00338 0.0 0.0751
ENSG00000116641 DOCK7 349567 eQTL 0.0116 -0.109 0.043 0.0 0.0 0.0751
ENSG00000116652 DLEU2L -509147 eQTL 0.0205 0.117 0.0504 0.00169 0.0 0.0751
ENSG00000142856 ITGB3BP -555786 eQTL 0.0105 0.146 0.0569 0.0 0.0 0.0751

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 ALG6 -329640 1.31e-06 6.99e-07 1.31e-07 4.31e-07 1.07e-07 3.15e-07 6.52e-07 1.55e-07 5.88e-07 2.87e-07 9.39e-07 4.62e-07 1.02e-06 1.59e-07 3e-07 2.99e-07 4.3e-07 4.31e-07 2.65e-07 1.82e-07 2.17e-07 4.79e-07 4.4e-07 2.49e-07 1.22e-06 2.74e-07 3.37e-07 2.98e-07 5.41e-07 7.71e-07 3.81e-07 5.82e-08 4.77e-08 1.79e-07 3.34e-07 1.48e-07 1.12e-07 9.71e-08 7.5e-08 2.24e-08 1.2e-07 7.52e-07 4.3e-08 1.95e-08 1.69e-07 1.44e-08 1.32e-07 2.25e-08 6.26e-08
ENSG00000142856 ITGB3BP -555786 3.71e-07 1.59e-07 5.91e-08 2.27e-07 1.03e-07 8.75e-08 2.4e-07 5.62e-08 1.66e-07 9.35e-08 1.66e-07 1.31e-07 2.38e-07 8.15e-08 5.36e-08 9.01e-08 4.45e-08 1.91e-07 7.39e-08 5.35e-08 1.22e-07 1.56e-07 1.69e-07 3.51e-08 2.28e-07 1.31e-07 1.19e-07 1.12e-07 1.37e-07 1.29e-07 1.26e-07 4.32e-08 3.65e-08 9.58e-08 3.57e-08 2.79e-08 4.06e-08 8.37e-08 6.35e-08 5.45e-08 5.1e-08 1.59e-07 4.87e-08 1.2e-08 3.4e-08 1.55e-08 8.67e-08 1.96e-09 4.91e-08