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Genes within 1Mb (chr1:63034826:A:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -558585 sc-eQTL 7.54e-01 -0.0233 0.0744 0.562 B L1
ENSG00000088035 ALG6 -332749 sc-eQTL 7.49e-01 -0.0247 0.077 0.562 B L1
ENSG00000116641 DOCK7 346440 sc-eQTL 5.73e-01 0.0435 0.077 0.562 B L1
ENSG00000125703 ATG4C 250694 sc-eQTL 7.26e-01 0.0188 0.0535 0.562 B L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 9.69e-01 -0.00336 0.0852 0.562 B L1
ENSG00000162607 USP1 598529 sc-eQTL 2.62e-01 0.0829 0.0738 0.562 B L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.92e-01 -0.0747 0.0872 0.562 B L1
ENSG00000079739 PGM1 -558585 sc-eQTL 7.09e-01 -0.0243 0.0652 0.562 CD4T L1
ENSG00000088035 ALG6 -332749 sc-eQTL 9.85e-01 0.00133 0.072 0.562 CD4T L1
ENSG00000116641 DOCK7 346440 sc-eQTL 8.59e-01 -0.013 0.0728 0.562 CD4T L1
ENSG00000125703 ATG4C 250694 sc-eQTL 3.08e-02 0.126 0.0582 0.562 CD4T L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 5.51e-01 -0.0498 0.0834 0.562 CD4T L1
ENSG00000162607 USP1 598529 sc-eQTL 3.56e-01 0.0527 0.057 0.562 CD4T L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.54e-01 0.0695 0.0748 0.562 CD4T L1
ENSG00000079739 PGM1 -558585 sc-eQTL 9.22e-01 0.007 0.0711 0.562 CD8T L1
ENSG00000088035 ALG6 -332749 sc-eQTL 7.90e-01 -0.0208 0.0784 0.562 CD8T L1
ENSG00000116641 DOCK7 346440 sc-eQTL 9.44e-01 -0.00554 0.0794 0.562 CD8T L1
ENSG00000125703 ATG4C 250694 sc-eQTL 1.53e-01 0.108 0.0751 0.562 CD8T L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 8.01e-01 -0.0213 0.0843 0.562 CD8T L1
ENSG00000162607 USP1 598529 sc-eQTL 5.16e-01 -0.0428 0.0656 0.562 CD8T L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.51e-01 0.0785 0.0839 0.562 CD8T L1
ENSG00000079739 PGM1 -558585 sc-eQTL 3.43e-01 -0.0734 0.0772 0.556 DC L1
ENSG00000088035 ALG6 -332749 sc-eQTL 2.16e-01 0.0987 0.0795 0.556 DC L1
ENSG00000116641 DOCK7 346440 sc-eQTL 2.94e-01 -0.0859 0.0816 0.556 DC L1
ENSG00000125703 ATG4C 250694 sc-eQTL 4.36e-01 -0.0499 0.0639 0.556 DC L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 2.16e-01 0.111 0.0891 0.556 DC L1
ENSG00000162607 USP1 598529 sc-eQTL 8.83e-01 0.0115 0.0781 0.556 DC L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 4.06e-01 -0.0647 0.0778 0.556 DC L1
ENSG00000079739 PGM1 -558585 sc-eQTL 9.83e-02 0.128 0.0769 0.562 Mono L1
ENSG00000088035 ALG6 -332749 sc-eQTL 8.99e-01 -0.0102 0.0807 0.562 Mono L1
ENSG00000116641 DOCK7 346440 sc-eQTL 2.48e-01 -0.0901 0.0778 0.562 Mono L1
ENSG00000125703 ATG4C 250694 sc-eQTL 8.30e-01 -0.0113 0.0528 0.562 Mono L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 8.81e-01 -0.0125 0.0834 0.562 Mono L1
ENSG00000162607 USP1 598529 sc-eQTL 3.19e-01 -0.0683 0.0683 0.562 Mono L1
ENSG00000240563 L1TD1 839977 sc-eQTL 3.09e-01 0.0651 0.0638 0.562 Mono L1
ENSG00000079739 PGM1 -558585 sc-eQTL 7.23e-01 0.0234 0.066 0.562 NK L1
ENSG00000088035 ALG6 -332749 sc-eQTL 9.49e-01 0.00496 0.0774 0.562 NK L1
ENSG00000116641 DOCK7 346440 sc-eQTL 2.71e-01 0.0701 0.0636 0.562 NK L1
ENSG00000125703 ATG4C 250694 sc-eQTL 1.02e-01 0.112 0.068 0.562 NK L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 8.72e-01 -0.0137 0.0851 0.562 NK L1
ENSG00000162607 USP1 598529 sc-eQTL 9.24e-01 -0.00726 0.076 0.562 NK L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.16e-01 -0.0926 0.0922 0.562 NK L1
ENSG00000079739 PGM1 -558585 sc-eQTL 1.64e-01 -0.104 0.0742 0.562 Other_T L1
ENSG00000088035 ALG6 -332749 sc-eQTL 4.84e-01 0.0524 0.0748 0.562 Other_T L1
ENSG00000116641 DOCK7 346440 sc-eQTL 5.53e-01 -0.0453 0.0764 0.562 Other_T L1
ENSG00000125703 ATG4C 250694 sc-eQTL 7.30e-01 0.0228 0.0662 0.562 Other_T L1
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.38e-01 -0.0196 0.0587 0.562 Other_T L1
ENSG00000162607 USP1 598529 sc-eQTL 2.55e-01 -0.0579 0.0507 0.562 Other_T L1
ENSG00000203965 EFCAB7 -488546 sc-eQTL 7.10e-01 -0.0338 0.0905 0.562 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -558585 sc-eQTL 2.64e-01 0.112 0.1 0.564 B_Activated L2
ENSG00000088035 ALG6 -332749 sc-eQTL 5.19e-01 -0.0622 0.0962 0.564 B_Activated L2
ENSG00000116641 DOCK7 346440 sc-eQTL 3.17e-01 0.0897 0.0894 0.564 B_Activated L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.25e-02 -0.234 0.0926 0.564 B_Activated L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 4.37e-01 0.0717 0.092 0.564 B_Activated L2
ENSG00000162607 USP1 598529 sc-eQTL 7.21e-01 0.0357 0.0999 0.564 B_Activated L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 6.23e-01 0.0429 0.0872 0.564 B_Activated L2
ENSG00000079739 PGM1 -558585 sc-eQTL 3.55e-01 -0.0815 0.088 0.564 B_Intermediate L2
ENSG00000088035 ALG6 -332749 sc-eQTL 7.20e-01 -0.0321 0.0895 0.564 B_Intermediate L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.60e-01 0.0498 0.0855 0.564 B_Intermediate L2
ENSG00000125703 ATG4C 250694 sc-eQTL 6.31e-02 0.134 0.0718 0.564 B_Intermediate L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.92e-01 0.0228 0.0863 0.564 B_Intermediate L2
ENSG00000162607 USP1 598529 sc-eQTL 1.31e-01 -0.13 0.0857 0.564 B_Intermediate L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.19e-01 -0.0851 0.0853 0.564 B_Intermediate L2
ENSG00000079739 PGM1 -558585 sc-eQTL 4.14e-01 -0.0725 0.0886 0.558 B_Memory L2
ENSG00000088035 ALG6 -332749 sc-eQTL 6.59e-01 0.0398 0.0902 0.558 B_Memory L2
ENSG00000116641 DOCK7 346440 sc-eQTL 3.43e-01 0.0802 0.0845 0.558 B_Memory L2
ENSG00000125703 ATG4C 250694 sc-eQTL 4.57e-02 -0.16 0.0797 0.558 B_Memory L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 9.23e-01 0.00896 0.0921 0.558 B_Memory L2
ENSG00000162607 USP1 598529 sc-eQTL 1.93e-01 0.121 0.0925 0.558 B_Memory L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 1.24e-02 -0.227 0.09 0.558 B_Memory L2
ENSG00000079739 PGM1 -558585 sc-eQTL 7.02e-01 -0.034 0.0888 0.562 B_Naive1 L2
ENSG00000088035 ALG6 -332749 sc-eQTL 8.61e-01 0.0157 0.0891 0.562 B_Naive1 L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.53e-01 0.0507 0.0853 0.562 B_Naive1 L2
ENSG00000125703 ATG4C 250694 sc-eQTL 8.56e-01 -0.012 0.0658 0.562 B_Naive1 L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 6.43e-01 0.0405 0.0872 0.562 B_Naive1 L2
ENSG00000162607 USP1 598529 sc-eQTL 2.99e-02 0.166 0.0759 0.562 B_Naive1 L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 9.94e-01 -0.00073 0.0931 0.562 B_Naive1 L2
ENSG00000079739 PGM1 -558585 sc-eQTL 9.11e-01 -0.00965 0.0867 0.56 B_Naive2 L2
ENSG00000088035 ALG6 -332749 sc-eQTL 6.50e-01 0.041 0.0904 0.56 B_Naive2 L2
ENSG00000116641 DOCK7 346440 sc-eQTL 8.44e-01 -0.0171 0.087 0.56 B_Naive2 L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.01e-01 0.137 0.0832 0.56 B_Naive2 L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 1.14e-01 -0.143 0.0902 0.56 B_Naive2 L2
ENSG00000162607 USP1 598529 sc-eQTL 1.39e-01 -0.128 0.086 0.56 B_Naive2 L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 7.28e-01 0.0315 0.0903 0.56 B_Naive2 L2
ENSG00000079739 PGM1 -558585 sc-eQTL 6.48e-02 -0.161 0.0866 0.559 CD4_CTL L2
ENSG00000088035 ALG6 -332749 sc-eQTL 8.95e-01 0.0122 0.0924 0.559 CD4_CTL L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.31e-01 0.0506 0.0807 0.559 CD4_CTL L2
ENSG00000125703 ATG4C 250694 sc-eQTL 8.54e-02 0.143 0.0829 0.559 CD4_CTL L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 1.00e+00 2.57e-05 0.0894 0.559 CD4_CTL L2
ENSG00000162607 USP1 598529 sc-eQTL 5.89e-01 -0.046 0.085 0.559 CD4_CTL L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 2.99e-01 -0.0882 0.0847 0.559 CD4_CTL L2
ENSG00000079739 PGM1 -558585 sc-eQTL 5.05e-01 -0.0488 0.0729 0.562 CD4_Naive L2
ENSG00000088035 ALG6 -332749 sc-eQTL 5.80e-01 0.0439 0.0793 0.562 CD4_Naive L2
ENSG00000116641 DOCK7 346440 sc-eQTL 9.61e-01 0.00385 0.078 0.562 CD4_Naive L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.26e-01 0.105 0.0685 0.562 CD4_Naive L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 4.38e-01 -0.0654 0.0841 0.562 CD4_Naive L2
ENSG00000162607 USP1 598529 sc-eQTL 4.89e-01 0.0446 0.0643 0.562 CD4_Naive L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 2.49e-01 0.0963 0.0834 0.562 CD4_Naive L2
ENSG00000079739 PGM1 -558585 sc-eQTL 6.98e-01 0.0296 0.0763 0.562 CD4_TCM L2
ENSG00000088035 ALG6 -332749 sc-eQTL 5.81e-01 -0.049 0.0885 0.562 CD4_TCM L2
ENSG00000116641 DOCK7 346440 sc-eQTL 6.66e-02 -0.144 0.0779 0.562 CD4_TCM L2
ENSG00000125703 ATG4C 250694 sc-eQTL 8.40e-02 0.132 0.0759 0.562 CD4_TCM L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.23e-01 0.032 0.0901 0.562 CD4_TCM L2
ENSG00000162607 USP1 598529 sc-eQTL 8.41e-01 0.0148 0.0739 0.562 CD4_TCM L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 7.99e-01 -0.0222 0.0872 0.562 CD4_TCM L2
ENSG00000079739 PGM1 -558585 sc-eQTL 5.89e-01 0.0477 0.0883 0.562 CD4_TEM L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.92e-01 -0.076 0.0886 0.562 CD4_TEM L2
ENSG00000116641 DOCK7 346440 sc-eQTL 1.04e-01 0.14 0.086 0.562 CD4_TEM L2
ENSG00000125703 ATG4C 250694 sc-eQTL 2.36e-01 0.0996 0.0838 0.562 CD4_TEM L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 5.55e-01 0.0512 0.0867 0.562 CD4_TEM L2
ENSG00000162607 USP1 598529 sc-eQTL 3.33e-01 0.0796 0.082 0.562 CD4_TEM L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 7.70e-01 0.0263 0.0899 0.562 CD4_TEM L2
ENSG00000079739 PGM1 -558585 sc-eQTL 4.85e-01 -0.0559 0.0799 0.562 CD8_CTL L2
ENSG00000088035 ALG6 -332749 sc-eQTL 6.02e-01 -0.0444 0.085 0.562 CD8_CTL L2
ENSG00000116641 DOCK7 346440 sc-eQTL 3.06e-01 -0.0825 0.0805 0.562 CD8_CTL L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.38e-01 0.127 0.0854 0.562 CD8_CTL L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 6.76e-01 -0.0374 0.0892 0.562 CD8_CTL L2
ENSG00000162607 USP1 598529 sc-eQTL 1.97e-01 -0.103 0.0797 0.562 CD8_CTL L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.33e-01 0.0886 0.0913 0.562 CD8_CTL L2
ENSG00000079739 PGM1 -558585 sc-eQTL 5.60e-01 0.0477 0.0816 0.562 CD8_Naive L2
ENSG00000088035 ALG6 -332749 sc-eQTL 8.89e-01 0.0118 0.0845 0.562 CD8_Naive L2
ENSG00000116641 DOCK7 346440 sc-eQTL 1.94e-01 0.113 0.0871 0.562 CD8_Naive L2
ENSG00000125703 ATG4C 250694 sc-eQTL 3.92e-02 0.172 0.0831 0.562 CD8_Naive L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.23e-01 0.0301 0.0849 0.562 CD8_Naive L2
ENSG00000162607 USP1 598529 sc-eQTL 5.27e-01 -0.0455 0.0718 0.562 CD8_Naive L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 8.55e-01 -0.0147 0.0801 0.562 CD8_Naive L2
ENSG00000079739 PGM1 -558585 sc-eQTL 9.91e-01 0.00101 0.0903 0.565 CD8_TCM L2
ENSG00000088035 ALG6 -332749 sc-eQTL 9.71e-01 0.00335 0.0914 0.565 CD8_TCM L2
ENSG00000116641 DOCK7 346440 sc-eQTL 7.22e-01 0.0318 0.0892 0.565 CD8_TCM L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.48e-01 0.132 0.0907 0.565 CD8_TCM L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 8.07e-01 -0.0217 0.0886 0.565 CD8_TCM L2
ENSG00000162607 USP1 598529 sc-eQTL 8.42e-01 0.017 0.0853 0.565 CD8_TCM L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 4.23e-02 0.183 0.0894 0.565 CD8_TCM L2
ENSG00000079739 PGM1 -558585 sc-eQTL 1.50e-01 -0.132 0.0916 0.575 CD8_TEM L2
ENSG00000088035 ALG6 -332749 sc-eQTL 1.82e-01 -0.123 0.092 0.575 CD8_TEM L2
ENSG00000116641 DOCK7 346440 sc-eQTL 9.31e-01 0.00771 0.0896 0.575 CD8_TEM L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.14e-01 -0.136 0.0856 0.575 CD8_TEM L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.24e-01 0.033 0.0932 0.575 CD8_TEM L2
ENSG00000162607 USP1 598529 sc-eQTL 5.78e-01 -0.0496 0.0889 0.575 CD8_TEM L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 9.55e-01 0.00512 0.0904 0.575 CD8_TEM L2
ENSG00000079739 PGM1 -558585 sc-eQTL 7.28e-01 -0.03 0.0861 0.565 MAIT L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.24e-01 0.0841 0.085 0.565 MAIT L2
ENSG00000116641 DOCK7 346440 sc-eQTL 6.50e-01 -0.0371 0.0816 0.565 MAIT L2
ENSG00000125703 ATG4C 250694 sc-eQTL 1.44e-01 0.126 0.0856 0.565 MAIT L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 5.66e-01 0.0496 0.0862 0.565 MAIT L2
ENSG00000162607 USP1 598529 sc-eQTL 7.82e-02 -0.15 0.0849 0.565 MAIT L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 4.28e-01 -0.0704 0.0887 0.565 MAIT L2
ENSG00000079739 PGM1 -558585 sc-eQTL 7.24e-01 0.0308 0.0871 0.567 NK_CD56bright L2
ENSG00000088035 ALG6 -332749 sc-eQTL 6.87e-01 -0.0361 0.0892 0.567 NK_CD56bright L2
ENSG00000116641 DOCK7 346440 sc-eQTL 6.95e-01 0.0304 0.0773 0.567 NK_CD56bright L2
ENSG00000125703 ATG4C 250694 sc-eQTL 7.66e-01 -0.0257 0.0864 0.567 NK_CD56bright L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 2.38e-01 0.106 0.0897 0.567 NK_CD56bright L2
ENSG00000162607 USP1 598529 sc-eQTL 4.18e-01 -0.0752 0.0926 0.567 NK_CD56bright L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 5.80e-01 -0.0492 0.0887 0.567 NK_CD56bright L2
ENSG00000079739 PGM1 -558585 sc-eQTL 6.05e-01 0.0355 0.0685 0.562 NK_CD56dim L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.76e-01 0.077 0.0869 0.562 NK_CD56dim L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.56e-02 0.144 0.0751 0.562 NK_CD56dim L2
ENSG00000125703 ATG4C 250694 sc-eQTL 2.43e-01 0.0898 0.0767 0.562 NK_CD56dim L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 9.85e-01 0.0016 0.0875 0.562 NK_CD56dim L2
ENSG00000162607 USP1 598529 sc-eQTL 4.13e-01 -0.0695 0.0847 0.562 NK_CD56dim L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 8.77e-01 -0.0147 0.0945 0.562 NK_CD56dim L2
ENSG00000079739 PGM1 -558585 sc-eQTL 8.51e-02 0.159 0.0918 0.562 NK_HLA L2
ENSG00000088035 ALG6 -332749 sc-eQTL 9.06e-01 -0.0114 0.0959 0.562 NK_HLA L2
ENSG00000116641 DOCK7 346440 sc-eQTL 2.79e-01 -0.0793 0.0731 0.562 NK_HLA L2
ENSG00000125703 ATG4C 250694 sc-eQTL 3.47e-01 0.0803 0.0851 0.562 NK_HLA L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 3.49e-01 -0.0839 0.0894 0.562 NK_HLA L2
ENSG00000162607 USP1 598529 sc-eQTL 8.99e-01 0.0119 0.0937 0.562 NK_HLA L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 9.18e-01 0.00883 0.0853 0.562 NK_HLA L2
ENSG00000079739 PGM1 -558585 sc-eQTL 5.22e-01 -0.0484 0.0755 0.562 NK_cytokine L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.34e-01 -0.0826 0.0852 0.562 NK_cytokine L2
ENSG00000116641 DOCK7 346440 sc-eQTL 2.86e-01 0.0844 0.0789 0.562 NK_cytokine L2
ENSG00000125703 ATG4C 250694 sc-eQTL 6.97e-02 0.146 0.0803 0.562 NK_cytokine L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 4.80e-01 0.0593 0.0838 0.562 NK_cytokine L2
ENSG00000162607 USP1 598529 sc-eQTL 2.50e-01 0.101 0.0879 0.562 NK_cytokine L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.39e-01 -0.0854 0.0892 0.562 NK_cytokine L2
ENSG00000079739 PGM1 -558585 sc-eQTL 1.54e-01 0.164 0.114 0.57 PB L2
ENSG00000088035 ALG6 -332749 sc-eQTL 1.47e-01 -0.175 0.12 0.57 PB L2
ENSG00000116641 DOCK7 346440 sc-eQTL 8.60e-01 0.0228 0.129 0.57 PB L2
ENSG00000125703 ATG4C 250694 sc-eQTL 5.47e-03 -0.308 0.109 0.57 PB L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 3.88e-01 -0.0971 0.112 0.57 PB L2
ENSG00000162607 USP1 598529 sc-eQTL 8.41e-01 -0.0226 0.112 0.57 PB L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 9.93e-02 0.203 0.122 0.57 PB L2
ENSG00000079739 PGM1 -558585 sc-eQTL 9.14e-01 -0.00896 0.0825 0.559 Pro_T L2
ENSG00000088035 ALG6 -332749 sc-eQTL 1.63e-01 -0.117 0.0835 0.559 Pro_T L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.81e-01 0.0465 0.0841 0.559 Pro_T L2
ENSG00000125703 ATG4C 250694 sc-eQTL 7.87e-01 -0.02 0.0737 0.559 Pro_T L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 5.95e-01 -0.0393 0.0739 0.559 Pro_T L2
ENSG00000162607 USP1 598529 sc-eQTL 9.53e-01 0.00297 0.0508 0.559 Pro_T L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 6.98e-01 0.0334 0.0859 0.559 Pro_T L2
ENSG00000079739 PGM1 -558585 sc-eQTL 6.70e-01 0.0366 0.0858 0.562 Treg L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.98e-01 0.0776 0.0916 0.562 Treg L2
ENSG00000116641 DOCK7 346440 sc-eQTL 1.69e-01 0.116 0.0839 0.562 Treg L2
ENSG00000125703 ATG4C 250694 sc-eQTL 4.38e-01 -0.0668 0.086 0.562 Treg L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.52e-01 -0.0286 0.0901 0.562 Treg L2
ENSG00000162607 USP1 598529 sc-eQTL 8.05e-01 0.0215 0.0871 0.562 Treg L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 6.54e-01 -0.0387 0.0861 0.562 Treg L2
ENSG00000079739 PGM1 -558585 sc-eQTL 4.73e-02 -0.167 0.0836 0.556 cDC L2
ENSG00000088035 ALG6 -332749 sc-eQTL 6.84e-01 0.0349 0.0856 0.556 cDC L2
ENSG00000116641 DOCK7 346440 sc-eQTL 4.79e-01 -0.0595 0.0839 0.556 cDC L2
ENSG00000125703 ATG4C 250694 sc-eQTL 8.84e-01 0.0106 0.073 0.556 cDC L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 2.55e-01 0.105 0.0922 0.556 cDC L2
ENSG00000162607 USP1 598529 sc-eQTL 5.40e-01 0.0506 0.0823 0.556 cDC L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 2.60e-01 0.0837 0.0741 0.556 cDC L2
ENSG00000079739 PGM1 -558585 sc-eQTL 8.75e-01 0.0127 0.0807 0.562 cMono_IL1B L2
ENSG00000088035 ALG6 -332749 sc-eQTL 9.86e-01 -0.00141 0.0808 0.562 cMono_IL1B L2
ENSG00000116641 DOCK7 346440 sc-eQTL 9.53e-02 -0.142 0.0846 0.562 cMono_IL1B L2
ENSG00000125703 ATG4C 250694 sc-eQTL 3.58e-01 0.0551 0.0598 0.562 cMono_IL1B L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.19e-01 0.0306 0.0848 0.562 cMono_IL1B L2
ENSG00000162607 USP1 598529 sc-eQTL 8.90e-01 0.0104 0.0749 0.562 cMono_IL1B L2
ENSG00000240563 L1TD1 839977 sc-eQTL 2.61e-01 0.0845 0.075 0.562 cMono_IL1B L2
ENSG00000079739 PGM1 -558585 sc-eQTL 1.50e-01 0.13 0.0899 0.562 cMono_S100A L2
ENSG00000088035 ALG6 -332749 sc-eQTL 5.57e-01 0.0538 0.0915 0.562 cMono_S100A L2
ENSG00000116641 DOCK7 346440 sc-eQTL 7.03e-01 0.0324 0.0849 0.562 cMono_S100A L2
ENSG00000125703 ATG4C 250694 sc-eQTL 5.46e-01 -0.0444 0.0735 0.562 cMono_S100A L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 1.04e-01 -0.135 0.0824 0.562 cMono_S100A L2
ENSG00000162607 USP1 598529 sc-eQTL 2.81e-01 -0.092 0.0851 0.562 cMono_S100A L2
ENSG00000240563 L1TD1 839977 sc-eQTL 1.23e-01 0.109 0.0706 0.562 cMono_S100A L2
ENSG00000079739 PGM1 -558585 sc-eQTL 9.85e-01 0.00183 0.0989 0.57 gdT L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.75e-01 0.0935 0.105 0.57 gdT L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.44e-01 0.0628 0.103 0.57 gdT L2
ENSG00000125703 ATG4C 250694 sc-eQTL 3.24e-01 0.0974 0.0984 0.57 gdT L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 9.94e-01 0.000818 0.105 0.57 gdT L2
ENSG00000162607 USP1 598529 sc-eQTL 4.61e-01 0.0732 0.0991 0.57 gdT L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 4.82e-01 -0.0726 0.103 0.57 gdT L2
ENSG00000079739 PGM1 -558585 sc-eQTL 3.19e-01 0.0897 0.0899 0.562 intMono L2
ENSG00000088035 ALG6 -332749 sc-eQTL 7.95e-01 -0.0218 0.0839 0.562 intMono L2
ENSG00000116641 DOCK7 346440 sc-eQTL 5.87e-01 -0.0466 0.0857 0.562 intMono L2
ENSG00000125703 ATG4C 250694 sc-eQTL 5.99e-01 -0.043 0.0818 0.562 intMono L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.94e-01 -0.0236 0.0901 0.562 intMono L2
ENSG00000162607 USP1 598529 sc-eQTL 2.65e-01 -0.102 0.0914 0.562 intMono L2
ENSG00000240563 L1TD1 839977 sc-eQTL 9.79e-01 -0.00181 0.0674 0.562 intMono L2
ENSG00000079739 PGM1 -558585 sc-eQTL 2.20e-01 0.1 0.0815 0.566 ncMono L2
ENSG00000088035 ALG6 -332749 sc-eQTL 1.42e-01 -0.132 0.0894 0.566 ncMono L2
ENSG00000116641 DOCK7 346440 sc-eQTL 8.06e-01 0.0218 0.0885 0.566 ncMono L2
ENSG00000125703 ATG4C 250694 sc-eQTL 5.83e-01 -0.0455 0.0826 0.566 ncMono L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 6.39e-01 0.0406 0.0864 0.566 ncMono L2
ENSG00000162607 USP1 598529 sc-eQTL 9.40e-01 0.00667 0.0883 0.566 ncMono L2
ENSG00000240563 L1TD1 839977 sc-eQTL 2.15e-01 0.0777 0.0624 0.566 ncMono L2
ENSG00000079739 PGM1 -558585 sc-eQTL 5.77e-01 0.0548 0.0981 0.534 pDC L2
ENSG00000088035 ALG6 -332749 sc-eQTL 3.68e-01 0.0862 0.0954 0.534 pDC L2
ENSG00000116641 DOCK7 346440 sc-eQTL 3.44e-01 -0.0925 0.0975 0.534 pDC L2
ENSG00000125703 ATG4C 250694 sc-eQTL 9.12e-01 0.00974 0.0877 0.534 pDC L2
ENSG00000142856 ITGB3BP -558895 sc-eQTL 1.47e-01 0.143 0.0977 0.534 pDC L2
ENSG00000162607 USP1 598529 sc-eQTL 5.81e-01 -0.0554 0.1 0.534 pDC L2
ENSG00000203965 EFCAB7 -488546 sc-eQTL 2.09e-01 -0.109 0.0867 0.534 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -558585 sc-eQTL 2.73e-01 -0.0901 0.0821 0.562 B_Memory LOneK1K
ENSG00000088035 ALG6 -332749 sc-eQTL 5.94e-01 -0.0485 0.0909 0.562 B_Memory LOneK1K
ENSG00000116641 DOCK7 346440 sc-eQTL 1.39e-01 0.117 0.0786 0.562 B_Memory LOneK1K
ENSG00000125703 ATG4C 250694 sc-eQTL 7.50e-01 -0.0203 0.0638 0.562 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.55e-01 0.0262 0.0839 0.562 B_Memory LOneK1K
ENSG00000162607 USP1 598529 sc-eQTL 8.67e-01 -0.0136 0.0814 0.562 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -488546 sc-eQTL 1.35e-01 -0.131 0.087 0.562 B_Memory LOneK1K
ENSG00000079739 PGM1 -558585 sc-eQTL 7.98e-01 -0.0221 0.0863 0.562 B_Naive LOneK1K
ENSG00000088035 ALG6 -332749 sc-eQTL 7.86e-01 0.0241 0.0889 0.562 B_Naive LOneK1K
ENSG00000116641 DOCK7 346440 sc-eQTL 7.04e-01 0.0316 0.083 0.562 B_Naive LOneK1K
ENSG00000125703 ATG4C 250694 sc-eQTL 2.30e-01 0.076 0.0631 0.562 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -558895 sc-eQTL 6.14e-01 -0.0452 0.0895 0.562 B_Naive LOneK1K
ENSG00000162607 USP1 598529 sc-eQTL 2.10e-01 0.0963 0.0767 0.562 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -488546 sc-eQTL 9.08e-01 -0.0105 0.09 0.562 B_Naive LOneK1K
ENSG00000079739 PGM1 -558585 sc-eQTL 3.08e-01 0.0842 0.0824 0.562 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -332749 sc-eQTL 7.64e-01 0.024 0.08 0.562 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 346440 sc-eQTL 2.56e-01 -0.0914 0.0803 0.562 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 250694 sc-eQTL 8.27e-01 0.0121 0.0557 0.562 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -558895 sc-eQTL 8.27e-01 -0.0181 0.0824 0.562 CD14_Mono LOneK1K
ENSG00000162607 USP1 598529 sc-eQTL 3.68e-01 -0.0633 0.0702 0.562 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 839977 sc-eQTL 1.52e-01 0.109 0.0759 0.562 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -558585 sc-eQTL 3.12e-01 0.0792 0.0781 0.56 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -332749 sc-eQTL 1.70e-01 -0.122 0.0885 0.56 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 346440 sc-eQTL 4.57e-01 -0.0654 0.0879 0.56 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 250694 sc-eQTL 6.01e-01 -0.0392 0.075 0.56 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -558895 sc-eQTL 6.06e-01 0.0449 0.087 0.56 CD16_Mono LOneK1K
ENSG00000162607 USP1 598529 sc-eQTL 1.84e-01 -0.109 0.0815 0.56 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 839977 sc-eQTL 2.90e-01 0.0591 0.0557 0.56 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -558585 sc-eQTL 9.16e-01 0.00713 0.0672 0.562 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -332749 sc-eQTL 7.25e-01 0.0284 0.0807 0.562 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 346440 sc-eQTL 7.98e-02 0.126 0.0718 0.562 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 250694 sc-eQTL 3.45e-02 0.152 0.0714 0.562 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -558895 sc-eQTL 7.38e-01 -0.0286 0.0856 0.562 NK_CD56dim LOneK1K
ENSG00000162607 USP1 598529 sc-eQTL 9.20e-01 0.00782 0.0777 0.562 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -488546 sc-eQTL 3.21e-01 -0.0938 0.0943 0.562 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000132855 ANGPTL3 437339 pQTL 0.0363 -0.0635 0.0303 0.0 0.0 0.432

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina