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Genes within 1Mb (chr1:63014009:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -579402 sc-eQTL 6.38e-01 0.0348 0.0739 0.419 B L1
ENSG00000088035 ALG6 -353566 sc-eQTL 5.53e-01 0.0454 0.0765 0.419 B L1
ENSG00000116641 DOCK7 325623 sc-eQTL 1.06e-01 -0.123 0.0761 0.419 B L1
ENSG00000125703 ATG4C 229877 sc-eQTL 3.72e-01 -0.0475 0.0531 0.419 B L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.56e-01 0.0154 0.0847 0.419 B L1
ENSG00000162607 USP1 577712 sc-eQTL 8.81e-01 -0.0111 0.0735 0.419 B L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 7.58e-01 -0.0267 0.0868 0.419 B L1
ENSG00000079739 PGM1 -579402 sc-eQTL 2.82e-01 -0.0677 0.0627 0.419 CD4T L1
ENSG00000088035 ALG6 -353566 sc-eQTL 6.48e-01 0.0318 0.0694 0.419 CD4T L1
ENSG00000116641 DOCK7 325623 sc-eQTL 8.96e-01 -0.00916 0.0703 0.419 CD4T L1
ENSG00000125703 ATG4C 229877 sc-eQTL 3.47e-01 -0.0534 0.0566 0.419 CD4T L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.52e-01 0.0151 0.0806 0.419 CD4T L1
ENSG00000162607 USP1 577712 sc-eQTL 6.11e-01 -0.0281 0.055 0.419 CD4T L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 6.08e-01 -0.0372 0.0723 0.419 CD4T L1
ENSG00000079739 PGM1 -579402 sc-eQTL 3.66e-01 -0.0635 0.07 0.419 CD8T L1
ENSG00000088035 ALG6 -353566 sc-eQTL 9.81e-01 -0.00182 0.0773 0.419 CD8T L1
ENSG00000116641 DOCK7 325623 sc-eQTL 2.89e-01 -0.0831 0.0781 0.419 CD8T L1
ENSG00000125703 ATG4C 229877 sc-eQTL 9.40e-01 -0.00562 0.0744 0.419 CD8T L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.53e-01 0.0155 0.0832 0.419 CD8T L1
ENSG00000162607 USP1 577712 sc-eQTL 6.66e-01 0.028 0.0648 0.419 CD8T L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 5.62e-01 -0.0481 0.0829 0.419 CD8T L1
ENSG00000079739 PGM1 -579402 sc-eQTL 3.34e-01 0.075 0.0774 0.426 DC L1
ENSG00000088035 ALG6 -353566 sc-eQTL 8.72e-01 -0.0129 0.0801 0.426 DC L1
ENSG00000116641 DOCK7 325623 sc-eQTL 4.47e-01 0.0625 0.082 0.426 DC L1
ENSG00000125703 ATG4C 229877 sc-eQTL 9.51e-01 -0.00396 0.0642 0.426 DC L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 6.86e-01 -0.0363 0.0897 0.426 DC L1
ENSG00000162607 USP1 577712 sc-eQTL 3.92e-01 -0.0671 0.0782 0.426 DC L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 8.65e-01 -0.0133 0.0781 0.426 DC L1
ENSG00000079739 PGM1 -579402 sc-eQTL 3.05e-01 -0.0777 0.0756 0.419 Mono L1
ENSG00000088035 ALG6 -353566 sc-eQTL 9.90e-01 -0.00103 0.0791 0.419 Mono L1
ENSG00000116641 DOCK7 325623 sc-eQTL 7.39e-01 0.0256 0.0765 0.419 Mono L1
ENSG00000125703 ATG4C 229877 sc-eQTL 4.78e-01 0.0367 0.0516 0.419 Mono L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 2.87e-01 0.0869 0.0815 0.419 Mono L1
ENSG00000162607 USP1 577712 sc-eQTL 5.29e-01 0.0422 0.0671 0.419 Mono L1
ENSG00000240563 L1TD1 819160 sc-eQTL 7.34e-01 0.0213 0.0626 0.419 Mono L1
ENSG00000079739 PGM1 -579402 sc-eQTL 6.67e-01 0.0278 0.0645 0.418 NK L1
ENSG00000088035 ALG6 -353566 sc-eQTL 1.40e-01 0.112 0.0753 0.418 NK L1
ENSG00000116641 DOCK7 325623 sc-eQTL 8.77e-02 -0.106 0.0619 0.418 NK L1
ENSG00000125703 ATG4C 229877 sc-eQTL 5.42e-02 -0.128 0.0663 0.418 NK L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.59e-01 0.0148 0.0832 0.418 NK L1
ENSG00000162607 USP1 577712 sc-eQTL 1.93e-01 -0.0968 0.074 0.418 NK L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 7.00e-01 0.0348 0.0903 0.418 NK L1
ENSG00000079739 PGM1 -579402 sc-eQTL 3.34e-01 0.0715 0.0737 0.419 Other_T L1
ENSG00000088035 ALG6 -353566 sc-eQTL 3.67e-01 -0.067 0.0741 0.419 Other_T L1
ENSG00000116641 DOCK7 325623 sc-eQTL 9.09e-01 0.00868 0.0758 0.419 Other_T L1
ENSG00000125703 ATG4C 229877 sc-eQTL 1.33e-01 -0.0985 0.0653 0.419 Other_T L1
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.54e-01 -0.00335 0.0582 0.419 Other_T L1
ENSG00000162607 USP1 577712 sc-eQTL 5.15e-01 0.0329 0.0504 0.419 Other_T L1
ENSG00000203965 EFCAB7 -509363 sc-eQTL 4.39e-01 0.0695 0.0897 0.419 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -579402 sc-eQTL 5.35e-01 -0.0623 0.1 0.413 B_Activated L2
ENSG00000088035 ALG6 -353566 sc-eQTL 1.22e-01 0.148 0.0954 0.413 B_Activated L2
ENSG00000116641 DOCK7 325623 sc-eQTL 3.33e-01 -0.0867 0.0892 0.413 B_Activated L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.03e-02 0.24 0.0923 0.413 B_Activated L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.07e-01 -0.0225 0.0919 0.413 B_Activated L2
ENSG00000162607 USP1 577712 sc-eQTL 9.80e-01 0.00255 0.0997 0.413 B_Activated L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 5.78e-01 -0.0484 0.087 0.413 B_Activated L2
ENSG00000079739 PGM1 -579402 sc-eQTL 3.05e-01 0.0924 0.0898 0.416 B_Intermediate L2
ENSG00000088035 ALG6 -353566 sc-eQTL 5.91e-01 0.0492 0.0914 0.416 B_Intermediate L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.91e-01 -0.0921 0.0871 0.416 B_Intermediate L2
ENSG00000125703 ATG4C 229877 sc-eQTL 3.75e-02 -0.153 0.0732 0.416 B_Intermediate L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 7.86e-01 -0.024 0.088 0.416 B_Intermediate L2
ENSG00000162607 USP1 577712 sc-eQTL 2.52e-01 0.101 0.0876 0.416 B_Intermediate L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.29e-01 0.105 0.0869 0.416 B_Intermediate L2
ENSG00000079739 PGM1 -579402 sc-eQTL 9.57e-01 -0.00478 0.0877 0.422 B_Memory L2
ENSG00000088035 ALG6 -353566 sc-eQTL 1.47e-01 0.129 0.0887 0.422 B_Memory L2
ENSG00000116641 DOCK7 325623 sc-eQTL 8.84e-01 -0.0122 0.0836 0.422 B_Memory L2
ENSG00000125703 ATG4C 229877 sc-eQTL 4.55e-01 0.0594 0.0793 0.422 B_Memory L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 6.16e-01 -0.0456 0.0909 0.422 B_Memory L2
ENSG00000162607 USP1 577712 sc-eQTL 9.90e-01 -0.00114 0.0917 0.422 B_Memory L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 1.64e-01 0.125 0.0898 0.422 B_Memory L2
ENSG00000079739 PGM1 -579402 sc-eQTL 6.87e-01 0.0353 0.0874 0.419 B_Naive1 L2
ENSG00000088035 ALG6 -353566 sc-eQTL 9.42e-01 -0.00644 0.0878 0.419 B_Naive1 L2
ENSG00000116641 DOCK7 325623 sc-eQTL 7.85e-01 -0.023 0.0841 0.419 B_Naive1 L2
ENSG00000125703 ATG4C 229877 sc-eQTL 7.93e-01 -0.017 0.0648 0.419 B_Naive1 L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 5.96e-01 -0.0456 0.0859 0.419 B_Naive1 L2
ENSG00000162607 USP1 577712 sc-eQTL 1.99e-01 -0.097 0.0753 0.419 B_Naive1 L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.14e-02 -0.154 0.0911 0.419 B_Naive1 L2
ENSG00000079739 PGM1 -579402 sc-eQTL 4.21e-01 0.0701 0.087 0.421 B_Naive2 L2
ENSG00000088035 ALG6 -353566 sc-eQTL 4.34e-01 -0.0711 0.0908 0.421 B_Naive2 L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.05e-01 -0.111 0.0871 0.421 B_Naive2 L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.09e-01 -0.135 0.0836 0.421 B_Naive2 L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 2.34e-01 0.109 0.0909 0.421 B_Naive2 L2
ENSG00000162607 USP1 577712 sc-eQTL 5.05e-01 0.0579 0.0868 0.421 B_Naive2 L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.69e-01 -0.00352 0.0908 0.421 B_Naive2 L2
ENSG00000079739 PGM1 -579402 sc-eQTL 5.34e-01 0.055 0.0882 0.418 CD4_CTL L2
ENSG00000088035 ALG6 -353566 sc-eQTL 4.81e-01 -0.0658 0.0932 0.418 CD4_CTL L2
ENSG00000116641 DOCK7 325623 sc-eQTL 3.89e-01 -0.0703 0.0814 0.418 CD4_CTL L2
ENSG00000125703 ATG4C 229877 sc-eQTL 4.20e-01 -0.0681 0.0842 0.418 CD4_CTL L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 4.27e-01 0.0717 0.0901 0.418 CD4_CTL L2
ENSG00000162607 USP1 577712 sc-eQTL 3.48e-01 0.0807 0.0857 0.418 CD4_CTL L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 1.03e-01 0.139 0.0852 0.418 CD4_CTL L2
ENSG00000079739 PGM1 -579402 sc-eQTL 3.06e-01 -0.0724 0.0705 0.419 CD4_Naive L2
ENSG00000088035 ALG6 -353566 sc-eQTL 4.45e-01 0.0587 0.0767 0.419 CD4_Naive L2
ENSG00000116641 DOCK7 325623 sc-eQTL 8.41e-01 -0.0151 0.0755 0.419 CD4_Naive L2
ENSG00000125703 ATG4C 229877 sc-eQTL 7.56e-01 0.0208 0.0667 0.419 CD4_Naive L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.19e-01 0.00832 0.0815 0.419 CD4_Naive L2
ENSG00000162607 USP1 577712 sc-eQTL 4.39e-01 -0.0482 0.0622 0.419 CD4_Naive L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 5.09e-01 -0.0535 0.0809 0.419 CD4_Naive L2
ENSG00000079739 PGM1 -579402 sc-eQTL 6.53e-01 -0.0329 0.073 0.419 CD4_TCM L2
ENSG00000088035 ALG6 -353566 sc-eQTL 9.65e-01 0.00378 0.0848 0.419 CD4_TCM L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.12e-01 0.0937 0.0749 0.419 CD4_TCM L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.03e-01 -0.119 0.0727 0.419 CD4_TCM L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.91e-01 0.074 0.0861 0.419 CD4_TCM L2
ENSG00000162607 USP1 577712 sc-eQTL 7.67e-01 -0.021 0.0707 0.419 CD4_TCM L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 5.48e-01 0.0502 0.0834 0.419 CD4_TCM L2
ENSG00000079739 PGM1 -579402 sc-eQTL 4.49e-01 -0.0653 0.0861 0.419 CD4_TEM L2
ENSG00000088035 ALG6 -353566 sc-eQTL 7.08e-01 -0.0325 0.0867 0.419 CD4_TEM L2
ENSG00000116641 DOCK7 325623 sc-eQTL 3.81e-01 -0.0741 0.0843 0.419 CD4_TEM L2
ENSG00000125703 ATG4C 229877 sc-eQTL 6.68e-02 -0.15 0.0814 0.419 CD4_TEM L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 5.74e-01 0.0476 0.0847 0.419 CD4_TEM L2
ENSG00000162607 USP1 577712 sc-eQTL 6.79e-01 -0.0332 0.0802 0.419 CD4_TEM L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.53e-01 -0.1 0.0875 0.419 CD4_TEM L2
ENSG00000079739 PGM1 -579402 sc-eQTL 8.15e-01 -0.0187 0.0797 0.419 CD8_CTL L2
ENSG00000088035 ALG6 -353566 sc-eQTL 5.62e-01 -0.0491 0.0847 0.419 CD8_CTL L2
ENSG00000116641 DOCK7 325623 sc-eQTL 9.25e-01 0.00754 0.0804 0.419 CD8_CTL L2
ENSG00000125703 ATG4C 229877 sc-eQTL 4.20e-01 -0.0691 0.0855 0.419 CD8_CTL L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 7.53e-01 0.0281 0.089 0.419 CD8_CTL L2
ENSG00000162607 USP1 577712 sc-eQTL 5.04e-01 0.0533 0.0796 0.419 CD8_CTL L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.00e-01 -0.117 0.0908 0.419 CD8_CTL L2
ENSG00000079739 PGM1 -579402 sc-eQTL 1.12e-01 -0.128 0.0803 0.419 CD8_Naive L2
ENSG00000088035 ALG6 -353566 sc-eQTL 6.43e-01 0.0387 0.0835 0.419 CD8_Naive L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.94e-02 -0.187 0.0854 0.419 CD8_Naive L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.89e-01 -0.109 0.0826 0.419 CD8_Naive L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 7.82e-01 -0.0233 0.084 0.419 CD8_Naive L2
ENSG00000162607 USP1 577712 sc-eQTL 5.19e-01 0.0459 0.0709 0.419 CD8_Naive L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.33e-01 -0.00664 0.0792 0.419 CD8_Naive L2
ENSG00000079739 PGM1 -579402 sc-eQTL 6.28e-01 0.0438 0.0902 0.412 CD8_TCM L2
ENSG00000088035 ALG6 -353566 sc-eQTL 6.45e-01 -0.0421 0.0914 0.412 CD8_TCM L2
ENSG00000116641 DOCK7 325623 sc-eQTL 4.43e-01 -0.0685 0.0891 0.412 CD8_TCM L2
ENSG00000125703 ATG4C 229877 sc-eQTL 3.21e-01 0.0905 0.091 0.412 CD8_TCM L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.71e-01 0.0145 0.0887 0.412 CD8_TCM L2
ENSG00000162607 USP1 577712 sc-eQTL 3.31e-01 0.083 0.0851 0.412 CD8_TCM L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 6.04e-01 -0.0469 0.0903 0.412 CD8_TCM L2
ENSG00000079739 PGM1 -579402 sc-eQTL 5.33e-02 0.174 0.0894 0.416 CD8_TEM L2
ENSG00000088035 ALG6 -353566 sc-eQTL 5.43e-01 -0.0552 0.0906 0.416 CD8_TEM L2
ENSG00000116641 DOCK7 325623 sc-eQTL 4.85e-01 -0.0613 0.0878 0.416 CD8_TEM L2
ENSG00000125703 ATG4C 229877 sc-eQTL 9.09e-01 -0.00964 0.0845 0.416 CD8_TEM L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 4.40e-01 -0.0706 0.0913 0.416 CD8_TEM L2
ENSG00000162607 USP1 577712 sc-eQTL 2.28e-01 0.105 0.0869 0.416 CD8_TEM L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 8.16e-01 0.0206 0.0887 0.416 CD8_TEM L2
ENSG00000079739 PGM1 -579402 sc-eQTL 3.29e-01 0.0829 0.0848 0.422 MAIT L2
ENSG00000088035 ALG6 -353566 sc-eQTL 4.18e-02 -0.171 0.0833 0.422 MAIT L2
ENSG00000116641 DOCK7 325623 sc-eQTL 9.02e-01 -0.00994 0.0806 0.422 MAIT L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.28e-01 -0.129 0.0845 0.422 MAIT L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 4.74e-01 -0.061 0.085 0.422 MAIT L2
ENSG00000162607 USP1 577712 sc-eQTL 7.52e-01 0.0267 0.0845 0.422 MAIT L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 4.85e-01 0.0613 0.0876 0.422 MAIT L2
ENSG00000079739 PGM1 -579402 sc-eQTL 9.58e-01 -0.00448 0.0851 0.416 NK_CD56bright L2
ENSG00000088035 ALG6 -353566 sc-eQTL 9.68e-01 0.00353 0.0873 0.416 NK_CD56bright L2
ENSG00000116641 DOCK7 325623 sc-eQTL 9.28e-01 -0.0068 0.0756 0.416 NK_CD56bright L2
ENSG00000125703 ATG4C 229877 sc-eQTL 2.85e-01 -0.0903 0.0843 0.416 NK_CD56bright L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.80e-01 0.00226 0.088 0.416 NK_CD56bright L2
ENSG00000162607 USP1 577712 sc-eQTL 9.23e-01 -0.00877 0.0907 0.416 NK_CD56bright L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 7.50e-02 0.154 0.0861 0.416 NK_CD56bright L2
ENSG00000079739 PGM1 -579402 sc-eQTL 8.52e-01 0.0126 0.0672 0.416 NK_CD56dim L2
ENSG00000088035 ALG6 -353566 sc-eQTL 6.92e-01 0.0338 0.0852 0.416 NK_CD56dim L2
ENSG00000116641 DOCK7 325623 sc-eQTL 4.24e-02 -0.15 0.0735 0.416 NK_CD56dim L2
ENSG00000125703 ATG4C 229877 sc-eQTL 3.64e-01 -0.0684 0.0752 0.416 NK_CD56dim L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 5.39e-01 -0.0527 0.0857 0.416 NK_CD56dim L2
ENSG00000162607 USP1 577712 sc-eQTL 4.45e-01 -0.0636 0.083 0.416 NK_CD56dim L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.51e-01 -0.00575 0.0926 0.416 NK_CD56dim L2
ENSG00000079739 PGM1 -579402 sc-eQTL 8.93e-01 0.0124 0.0917 0.413 NK_HLA L2
ENSG00000088035 ALG6 -353566 sc-eQTL 9.39e-01 0.00731 0.0951 0.413 NK_HLA L2
ENSG00000116641 DOCK7 325623 sc-eQTL 7.24e-01 0.0257 0.0727 0.413 NK_HLA L2
ENSG00000125703 ATG4C 229877 sc-eQTL 8.06e-01 -0.0208 0.0846 0.413 NK_HLA L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 1.05e-01 0.144 0.0882 0.413 NK_HLA L2
ENSG00000162607 USP1 577712 sc-eQTL 9.81e-01 0.0022 0.0929 0.413 NK_HLA L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 6.05e-01 0.0438 0.0845 0.413 NK_HLA L2
ENSG00000079739 PGM1 -579402 sc-eQTL 5.58e-01 0.0436 0.0743 0.416 NK_cytokine L2
ENSG00000088035 ALG6 -353566 sc-eQTL 1.25e-02 0.209 0.0828 0.416 NK_cytokine L2
ENSG00000116641 DOCK7 325623 sc-eQTL 3.78e-01 -0.0687 0.0777 0.416 NK_cytokine L2
ENSG00000125703 ATG4C 229877 sc-eQTL 6.41e-02 -0.147 0.079 0.416 NK_cytokine L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 4.82e-01 -0.058 0.0824 0.416 NK_cytokine L2
ENSG00000162607 USP1 577712 sc-eQTL 1.21e-01 -0.134 0.0862 0.416 NK_cytokine L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.39e-01 -0.00668 0.0879 0.416 NK_cytokine L2
ENSG00000079739 PGM1 -579402 sc-eQTL 7.98e-01 -0.0265 0.104 0.419 PB L2
ENSG00000088035 ALG6 -353566 sc-eQTL 7.82e-01 -0.0302 0.109 0.419 PB L2
ENSG00000116641 DOCK7 325623 sc-eQTL 8.45e-01 0.0228 0.116 0.419 PB L2
ENSG00000125703 ATG4C 229877 sc-eQTL 6.46e-01 0.0466 0.101 0.419 PB L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 8.62e-01 -0.0176 0.101 0.419 PB L2
ENSG00000162607 USP1 577712 sc-eQTL 5.24e-01 0.0643 0.101 0.419 PB L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.86e-01 0.00202 0.111 0.419 PB L2
ENSG00000079739 PGM1 -579402 sc-eQTL 3.88e-01 0.069 0.0798 0.42 Pro_T L2
ENSG00000088035 ALG6 -353566 sc-eQTL 9.19e-01 -0.00827 0.0813 0.42 Pro_T L2
ENSG00000116641 DOCK7 325623 sc-eQTL 9.74e-01 -0.00266 0.0816 0.42 Pro_T L2
ENSG00000125703 ATG4C 229877 sc-eQTL 5.39e-01 -0.0439 0.0714 0.42 Pro_T L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.24e-01 0.0706 0.0715 0.42 Pro_T L2
ENSG00000162607 USP1 577712 sc-eQTL 4.28e-01 0.0391 0.0492 0.42 Pro_T L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 6.11e-01 -0.0424 0.0832 0.42 Pro_T L2
ENSG00000079739 PGM1 -579402 sc-eQTL 2.99e-01 -0.088 0.0846 0.419 Treg L2
ENSG00000088035 ALG6 -353566 sc-eQTL 4.57e-01 -0.0675 0.0905 0.419 Treg L2
ENSG00000116641 DOCK7 325623 sc-eQTL 4.73e-01 -0.0597 0.0831 0.419 Treg L2
ENSG00000125703 ATG4C 229877 sc-eQTL 9.89e-01 0.00122 0.085 0.419 Treg L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.47e-01 -0.0837 0.0888 0.419 Treg L2
ENSG00000162607 USP1 577712 sc-eQTL 7.21e-01 0.0308 0.086 0.419 Treg L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.63e-01 0.0952 0.0849 0.419 Treg L2
ENSG00000079739 PGM1 -579402 sc-eQTL 2.75e-01 0.0944 0.0861 0.424 cDC L2
ENSG00000088035 ALG6 -353566 sc-eQTL 6.43e-01 0.0406 0.0876 0.424 cDC L2
ENSG00000116641 DOCK7 325623 sc-eQTL 8.70e-01 0.014 0.086 0.424 cDC L2
ENSG00000125703 ATG4C 229877 sc-eQTL 1.78e-01 -0.101 0.0743 0.424 cDC L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 5.94e-01 -0.0505 0.0946 0.424 cDC L2
ENSG00000162607 USP1 577712 sc-eQTL 3.09e-01 -0.0858 0.084 0.424 cDC L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.75e-01 -0.083 0.0758 0.424 cDC L2
ENSG00000079739 PGM1 -579402 sc-eQTL 5.86e-01 -0.0431 0.0791 0.419 cMono_IL1B L2
ENSG00000088035 ALG6 -353566 sc-eQTL 6.62e-01 0.0347 0.0792 0.419 cMono_IL1B L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.39e-01 0.0983 0.0833 0.419 cMono_IL1B L2
ENSG00000125703 ATG4C 229877 sc-eQTL 2.97e-01 -0.0613 0.0586 0.419 cMono_IL1B L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.57e-01 -0.00447 0.0832 0.419 cMono_IL1B L2
ENSG00000162607 USP1 577712 sc-eQTL 6.20e-01 0.0365 0.0734 0.419 cMono_IL1B L2
ENSG00000240563 L1TD1 819160 sc-eQTL 9.09e-01 0.00844 0.0738 0.419 cMono_IL1B L2
ENSG00000079739 PGM1 -579402 sc-eQTL 8.55e-01 -0.0161 0.0881 0.419 cMono_S100A L2
ENSG00000088035 ALG6 -353566 sc-eQTL 7.79e-02 -0.157 0.0886 0.419 cMono_S100A L2
ENSG00000116641 DOCK7 325623 sc-eQTL 3.54e-01 -0.0767 0.0826 0.419 cMono_S100A L2
ENSG00000125703 ATG4C 229877 sc-eQTL 4.59e-02 0.143 0.071 0.419 cMono_S100A L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 2.66e-02 0.178 0.0799 0.419 cMono_S100A L2
ENSG00000162607 USP1 577712 sc-eQTL 5.42e-01 0.0507 0.0831 0.419 cMono_S100A L2
ENSG00000240563 L1TD1 819160 sc-eQTL 5.94e-01 -0.0369 0.0692 0.419 cMono_S100A L2
ENSG00000079739 PGM1 -579402 sc-eQTL 6.39e-01 -0.0465 0.0988 0.421 gdT L2
ENSG00000088035 ALG6 -353566 sc-eQTL 2.71e-01 -0.116 0.105 0.421 gdT L2
ENSG00000116641 DOCK7 325623 sc-eQTL 6.24e-01 0.0507 0.103 0.421 gdT L2
ENSG00000125703 ATG4C 229877 sc-eQTL 5.11e-01 -0.0649 0.0986 0.421 gdT L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.85e-01 0.00201 0.105 0.421 gdT L2
ENSG00000162607 USP1 577712 sc-eQTL 6.23e-01 0.0489 0.0992 0.421 gdT L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 4.15e-01 0.0842 0.103 0.421 gdT L2
ENSG00000079739 PGM1 -579402 sc-eQTL 6.91e-01 0.0351 0.0883 0.42 intMono L2
ENSG00000088035 ALG6 -353566 sc-eQTL 2.08e-01 0.103 0.082 0.42 intMono L2
ENSG00000116641 DOCK7 325623 sc-eQTL 5.99e-01 -0.0443 0.084 0.42 intMono L2
ENSG00000125703 ATG4C 229877 sc-eQTL 9.87e-01 -0.00128 0.0802 0.42 intMono L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 6.47e-01 0.0405 0.0883 0.42 intMono L2
ENSG00000162607 USP1 577712 sc-eQTL 7.29e-01 -0.0312 0.0899 0.42 intMono L2
ENSG00000240563 L1TD1 819160 sc-eQTL 3.79e-01 0.0582 0.066 0.42 intMono L2
ENSG00000079739 PGM1 -579402 sc-eQTL 3.55e-01 -0.0746 0.0805 0.419 ncMono L2
ENSG00000088035 ALG6 -353566 sc-eQTL 1.34e-01 0.133 0.0882 0.419 ncMono L2
ENSG00000116641 DOCK7 325623 sc-eQTL 2.48e-01 -0.101 0.087 0.419 ncMono L2
ENSG00000125703 ATG4C 229877 sc-eQTL 6.15e-01 0.041 0.0814 0.419 ncMono L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 2.27e-01 0.103 0.0849 0.419 ncMono L2
ENSG00000162607 USP1 577712 sc-eQTL 7.52e-01 0.0276 0.0871 0.419 ncMono L2
ENSG00000240563 L1TD1 819160 sc-eQTL 8.75e-01 0.00971 0.0618 0.419 ncMono L2
ENSG00000079739 PGM1 -579402 sc-eQTL 2.97e-01 0.103 0.0986 0.429 pDC L2
ENSG00000088035 ALG6 -353566 sc-eQTL 7.13e-01 -0.0354 0.0963 0.429 pDC L2
ENSG00000116641 DOCK7 325623 sc-eQTL 1.88e-01 0.129 0.0979 0.429 pDC L2
ENSG00000125703 ATG4C 229877 sc-eQTL 9.37e-01 0.00701 0.0883 0.429 pDC L2
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.37e-01 -0.0952 0.0988 0.429 pDC L2
ENSG00000162607 USP1 577712 sc-eQTL 5.44e-01 -0.0613 0.101 0.429 pDC L2
ENSG00000203965 EFCAB7 -509363 sc-eQTL 7.02e-01 0.0336 0.0877 0.429 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -579402 sc-eQTL 2.28e-01 0.0995 0.0823 0.419 B_Memory LOneK1K
ENSG00000088035 ALG6 -353566 sc-eQTL 2.39e-02 0.205 0.0903 0.419 B_Memory LOneK1K
ENSG00000116641 DOCK7 325623 sc-eQTL 6.12e-02 -0.148 0.0786 0.419 B_Memory LOneK1K
ENSG00000125703 ATG4C 229877 sc-eQTL 2.40e-01 -0.0752 0.0639 0.419 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -579712 sc-eQTL 4.08e-01 -0.0698 0.0841 0.419 B_Memory LOneK1K
ENSG00000162607 USP1 577712 sc-eQTL 2.95e-01 0.0856 0.0816 0.419 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.98e-01 0.0914 0.0875 0.419 B_Memory LOneK1K
ENSG00000079739 PGM1 -579402 sc-eQTL 3.54e-01 0.0793 0.0854 0.419 B_Naive LOneK1K
ENSG00000088035 ALG6 -353566 sc-eQTL 5.48e-01 -0.053 0.088 0.419 B_Naive LOneK1K
ENSG00000116641 DOCK7 325623 sc-eQTL 3.91e-01 -0.0706 0.0821 0.419 B_Naive LOneK1K
ENSG00000125703 ATG4C 229877 sc-eQTL 2.92e-01 -0.0662 0.0626 0.419 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -579712 sc-eQTL 7.12e-01 0.0329 0.0887 0.419 B_Naive LOneK1K
ENSG00000162607 USP1 577712 sc-eQTL 3.85e-01 -0.0663 0.0761 0.419 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -509363 sc-eQTL 2.04e-01 -0.113 0.0889 0.419 B_Naive LOneK1K
ENSG00000079739 PGM1 -579402 sc-eQTL 3.93e-01 -0.0695 0.0812 0.419 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -353566 sc-eQTL 6.65e-01 -0.0342 0.0788 0.419 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 325623 sc-eQTL 6.82e-01 0.0325 0.0793 0.419 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 229877 sc-eQTL 7.27e-01 0.0192 0.0548 0.419 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.05e-01 0.0832 0.081 0.419 CD14_Mono LOneK1K
ENSG00000162607 USP1 577712 sc-eQTL 2.48e-01 0.0801 0.0691 0.419 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 819160 sc-eQTL 9.02e-01 -0.00924 0.0752 0.419 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -579402 sc-eQTL 9.83e-01 -0.00162 0.0769 0.42 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -353566 sc-eQTL 2.08e-01 0.11 0.087 0.42 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 325623 sc-eQTL 7.56e-01 -0.0269 0.0864 0.42 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 229877 sc-eQTL 4.86e-01 0.0514 0.0736 0.42 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -579712 sc-eQTL 3.51e-01 0.0798 0.0854 0.42 CD16_Mono LOneK1K
ENSG00000162607 USP1 577712 sc-eQTL 4.78e-01 0.0571 0.0803 0.42 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 819160 sc-eQTL 4.59e-01 0.0406 0.0547 0.42 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -579402 sc-eQTL 7.02e-01 0.0251 0.0656 0.416 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -353566 sc-eQTL 1.36e-01 0.117 0.0784 0.416 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 325623 sc-eQTL 4.62e-02 -0.14 0.0699 0.416 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 229877 sc-eQTL 7.87e-02 -0.124 0.0699 0.416 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -579712 sc-eQTL 9.73e-01 -0.00278 0.0835 0.416 NK_CD56dim LOneK1K
ENSG00000162607 USP1 577712 sc-eQTL 1.29e-01 -0.115 0.0754 0.416 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -509363 sc-eQTL 9.44e-01 0.0065 0.0922 0.416 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -353566 1.21e-06 8.81e-07 3.06e-07 3.5e-07 2.53e-07 3.69e-07 8.7e-07 3.33e-07 1.09e-06 3.64e-07 1.22e-06 5.68e-07 1.47e-06 2.29e-07 4.37e-07 6e-07 7.76e-07 5.67e-07 4.54e-07 4.71e-07 3.39e-07 8.58e-07 6.04e-07 5.39e-07 1.72e-06 2.94e-07 6.16e-07 5.31e-07 8.81e-07 9.45e-07 4.54e-07 4.87e-08 1.94e-07 3.78e-07 3.84e-07 3.22e-07 3.26e-07 1.5e-07 1.38e-07 7.66e-08 2.83e-07 1.12e-06 5.65e-08 1.94e-08 1.93e-07 7.22e-08 1.7e-07 8.51e-08 8.38e-08