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Genes within 1Mb (chr1:63011881:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -581530 sc-eQTL 8.01e-01 -0.0355 0.141 0.923 B L1
ENSG00000088035 ALG6 -355694 sc-eQTL 6.15e-01 0.0734 0.146 0.923 B L1
ENSG00000116641 DOCK7 323495 sc-eQTL 8.51e-01 0.0275 0.146 0.923 B L1
ENSG00000125703 ATG4C 227749 sc-eQTL 5.09e-01 0.067 0.101 0.923 B L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.87e-01 -0.0436 0.161 0.923 B L1
ENSG00000162607 USP1 575584 sc-eQTL 1.75e-01 -0.19 0.139 0.923 B L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 9.37e-01 -0.0131 0.165 0.923 B L1
ENSG00000079739 PGM1 -581530 sc-eQTL 2.88e-01 0.13 0.122 0.923 CD4T L1
ENSG00000088035 ALG6 -355694 sc-eQTL 4.13e-01 -0.111 0.135 0.923 CD4T L1
ENSG00000116641 DOCK7 323495 sc-eQTL 7.10e-01 0.0509 0.137 0.923 CD4T L1
ENSG00000125703 ATG4C 227749 sc-eQTL 9.75e-01 0.00349 0.11 0.923 CD4T L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 6.65e-01 0.068 0.157 0.923 CD4T L1
ENSG00000162607 USP1 575584 sc-eQTL 8.46e-01 0.0209 0.107 0.923 CD4T L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.60e-01 0.0619 0.141 0.923 CD4T L1
ENSG00000079739 PGM1 -581530 sc-eQTL 4.06e-01 0.113 0.135 0.923 CD8T L1
ENSG00000088035 ALG6 -355694 sc-eQTL 2.11e-01 0.187 0.149 0.923 CD8T L1
ENSG00000116641 DOCK7 323495 sc-eQTL 7.88e-01 -0.0408 0.151 0.923 CD8T L1
ENSG00000125703 ATG4C 227749 sc-eQTL 7.46e-01 -0.0466 0.144 0.923 CD8T L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.25e-01 -0.0151 0.161 0.923 CD8T L1
ENSG00000162607 USP1 575584 sc-eQTL 9.65e-01 0.00556 0.125 0.923 CD8T L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 4.51e-01 0.121 0.16 0.923 CD8T L1
ENSG00000079739 PGM1 -581530 sc-eQTL 9.94e-01 0.00117 0.15 0.921 DC L1
ENSG00000088035 ALG6 -355694 sc-eQTL 8.86e-01 -0.0221 0.154 0.921 DC L1
ENSG00000116641 DOCK7 323495 sc-eQTL 6.97e-01 -0.0617 0.158 0.921 DC L1
ENSG00000125703 ATG4C 227749 sc-eQTL 1.35e-01 0.185 0.123 0.921 DC L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.06e-01 -0.0654 0.173 0.921 DC L1
ENSG00000162607 USP1 575584 sc-eQTL 5.63e-01 0.0876 0.151 0.921 DC L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 1.29e-01 0.229 0.15 0.921 DC L1
ENSG00000079739 PGM1 -581530 sc-eQTL 3.90e-01 0.124 0.144 0.923 Mono L1
ENSG00000088035 ALG6 -355694 sc-eQTL 5.96e-01 -0.0798 0.151 0.923 Mono L1
ENSG00000116641 DOCK7 323495 sc-eQTL 7.21e-01 0.052 0.146 0.923 Mono L1
ENSG00000125703 ATG4C 227749 sc-eQTL 7.04e-01 -0.0375 0.0984 0.923 Mono L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.84e-01 -0.00313 0.156 0.923 Mono L1
ENSG00000162607 USP1 575584 sc-eQTL 5.56e-01 -0.0752 0.128 0.923 Mono L1
ENSG00000240563 L1TD1 817032 sc-eQTL 9.98e-01 -0.000342 0.119 0.923 Mono L1
ENSG00000079739 PGM1 -581530 sc-eQTL 2.63e-01 -0.141 0.125 0.923 NK L1
ENSG00000088035 ALG6 -355694 sc-eQTL 8.27e-01 -0.0323 0.147 0.923 NK L1
ENSG00000116641 DOCK7 323495 sc-eQTL 5.99e-01 0.0637 0.121 0.923 NK L1
ENSG00000125703 ATG4C 227749 sc-eQTL 7.91e-01 0.0346 0.13 0.923 NK L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 5.19e-01 -0.104 0.162 0.923 NK L1
ENSG00000162607 USP1 575584 sc-eQTL 1.80e-02 0.34 0.143 0.923 NK L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 5.69e-01 0.1 0.176 0.923 NK L1
ENSG00000079739 PGM1 -581530 sc-eQTL 6.69e-01 0.0613 0.143 0.923 Other_T L1
ENSG00000088035 ALG6 -355694 sc-eQTL 9.88e-01 -0.00218 0.144 0.923 Other_T L1
ENSG00000116641 DOCK7 323495 sc-eQTL 7.04e-01 -0.0558 0.147 0.923 Other_T L1
ENSG00000125703 ATG4C 227749 sc-eQTL 3.60e-01 0.116 0.127 0.923 Other_T L1
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.15e-01 -0.0265 0.113 0.923 Other_T L1
ENSG00000162607 USP1 575584 sc-eQTL 9.92e-01 -0.00101 0.0977 0.923 Other_T L1
ENSG00000203965 EFCAB7 -511491 sc-eQTL 8.78e-01 -0.0266 0.174 0.923 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -581530 sc-eQTL 9.67e-01 -0.0083 0.201 0.926 B_Activated L2
ENSG00000088035 ALG6 -355694 sc-eQTL 7.96e-01 0.05 0.193 0.926 B_Activated L2
ENSG00000116641 DOCK7 323495 sc-eQTL 2.50e-01 0.206 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C 227749 sc-eQTL 5.22e-01 0.121 0.188 0.926 B_Activated L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 2.37e-01 0.218 0.183 0.926 B_Activated L2
ENSG00000162607 USP1 575584 sc-eQTL 6.75e-01 -0.0839 0.2 0.926 B_Activated L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 9.92e-01 -0.00179 0.174 0.926 B_Activated L2
ENSG00000079739 PGM1 -581530 sc-eQTL 2.19e-01 -0.213 0.172 0.923 B_Intermediate L2
ENSG00000088035 ALG6 -355694 sc-eQTL 5.05e-01 0.117 0.175 0.923 B_Intermediate L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.26e-01 -0.107 0.168 0.923 B_Intermediate L2
ENSG00000125703 ATG4C 227749 sc-eQTL 8.47e-01 -0.0275 0.142 0.923 B_Intermediate L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.00e-01 0.0429 0.169 0.923 B_Intermediate L2
ENSG00000162607 USP1 575584 sc-eQTL 5.37e-01 0.104 0.169 0.923 B_Intermediate L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 5.57e-01 -0.0986 0.167 0.923 B_Intermediate L2
ENSG00000079739 PGM1 -581530 sc-eQTL 7.10e-01 0.0627 0.169 0.922 B_Memory L2
ENSG00000088035 ALG6 -355694 sc-eQTL 2.17e-01 -0.212 0.171 0.922 B_Memory L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.71e-01 0.0913 0.161 0.922 B_Memory L2
ENSG00000125703 ATG4C 227749 sc-eQTL 7.56e-01 0.0476 0.153 0.922 B_Memory L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 2.69e-01 0.193 0.174 0.922 B_Memory L2
ENSG00000162607 USP1 575584 sc-eQTL 3.19e-01 -0.176 0.176 0.922 B_Memory L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 7.94e-01 0.0454 0.174 0.922 B_Memory L2
ENSG00000079739 PGM1 -581530 sc-eQTL 8.86e-01 -0.0242 0.169 0.923 B_Naive1 L2
ENSG00000088035 ALG6 -355694 sc-eQTL 6.20e-01 0.084 0.169 0.923 B_Naive1 L2
ENSG00000116641 DOCK7 323495 sc-eQTL 3.06e-01 -0.166 0.162 0.923 B_Naive1 L2
ENSG00000125703 ATG4C 227749 sc-eQTL 3.28e-01 0.122 0.125 0.923 B_Naive1 L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.37e-01 -0.0342 0.166 0.923 B_Naive1 L2
ENSG00000162607 USP1 575584 sc-eQTL 4.60e-01 -0.108 0.146 0.923 B_Naive1 L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.21e-01 0.0876 0.177 0.923 B_Naive1 L2
ENSG00000079739 PGM1 -581530 sc-eQTL 8.33e-01 0.0348 0.165 0.923 B_Naive2 L2
ENSG00000088035 ALG6 -355694 sc-eQTL 3.89e-01 0.148 0.172 0.923 B_Naive2 L2
ENSG00000116641 DOCK7 323495 sc-eQTL 1.29e-01 0.251 0.165 0.923 B_Naive2 L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.07e-01 0.132 0.159 0.923 B_Naive2 L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.07e-01 -0.0202 0.173 0.923 B_Naive2 L2
ENSG00000162607 USP1 575584 sc-eQTL 9.57e-01 0.00894 0.165 0.923 B_Naive2 L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 7.57e-01 0.0532 0.172 0.923 B_Naive2 L2
ENSG00000079739 PGM1 -581530 sc-eQTL 2.89e-01 0.185 0.174 0.925 CD4_CTL L2
ENSG00000088035 ALG6 -355694 sc-eQTL 5.10e-01 0.122 0.184 0.925 CD4_CTL L2
ENSG00000116641 DOCK7 323495 sc-eQTL 2.63e-01 0.181 0.161 0.925 CD4_CTL L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.32e-01 -0.131 0.167 0.925 CD4_CTL L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.46e-01 -0.0347 0.179 0.925 CD4_CTL L2
ENSG00000162607 USP1 575584 sc-eQTL 9.49e-01 0.011 0.17 0.925 CD4_CTL L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 1.95e-01 -0.22 0.169 0.925 CD4_CTL L2
ENSG00000079739 PGM1 -581530 sc-eQTL 3.94e-01 0.117 0.137 0.923 CD4_Naive L2
ENSG00000088035 ALG6 -355694 sc-eQTL 1.27e-01 -0.227 0.148 0.923 CD4_Naive L2
ENSG00000116641 DOCK7 323495 sc-eQTL 7.78e-01 0.0413 0.146 0.923 CD4_Naive L2
ENSG00000125703 ATG4C 227749 sc-eQTL 5.26e-01 -0.0822 0.129 0.923 CD4_Naive L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 6.88e-01 0.0635 0.158 0.923 CD4_Naive L2
ENSG00000162607 USP1 575584 sc-eQTL 9.73e-01 0.00405 0.121 0.923 CD4_Naive L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.31e-01 0.0755 0.157 0.923 CD4_Naive L2
ENSG00000079739 PGM1 -581530 sc-eQTL 4.56e-01 0.105 0.141 0.923 CD4_TCM L2
ENSG00000088035 ALG6 -355694 sc-eQTL 7.75e-01 -0.0467 0.163 0.923 CD4_TCM L2
ENSG00000116641 DOCK7 323495 sc-eQTL 3.49e-01 0.136 0.145 0.923 CD4_TCM L2
ENSG00000125703 ATG4C 227749 sc-eQTL 9.91e-01 0.00167 0.141 0.923 CD4_TCM L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 4.08e-01 -0.137 0.166 0.923 CD4_TCM L2
ENSG00000162607 USP1 575584 sc-eQTL 5.29e-01 0.086 0.136 0.923 CD4_TCM L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.96e-01 -0.063 0.161 0.923 CD4_TCM L2
ENSG00000079739 PGM1 -581530 sc-eQTL 7.86e-02 0.294 0.166 0.923 CD4_TEM L2
ENSG00000088035 ALG6 -355694 sc-eQTL 2.00e-01 0.216 0.168 0.923 CD4_TEM L2
ENSG00000116641 DOCK7 323495 sc-eQTL 3.01e-01 -0.17 0.164 0.923 CD4_TEM L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.27e-01 0.127 0.159 0.923 CD4_TEM L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 3.72e-01 -0.147 0.164 0.923 CD4_TEM L2
ENSG00000162607 USP1 575584 sc-eQTL 3.17e-01 -0.156 0.156 0.923 CD4_TEM L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 2.39e-01 0.201 0.17 0.923 CD4_TEM L2
ENSG00000079739 PGM1 -581530 sc-eQTL 1.63e-01 0.213 0.153 0.923 CD8_CTL L2
ENSG00000088035 ALG6 -355694 sc-eQTL 2.51e-01 0.187 0.162 0.923 CD8_CTL L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.61e-01 -0.0901 0.155 0.923 CD8_CTL L2
ENSG00000125703 ATG4C 227749 sc-eQTL 6.34e-01 -0.0785 0.164 0.923 CD8_CTL L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.65e-01 -0.00751 0.171 0.923 CD8_CTL L2
ENSG00000162607 USP1 575584 sc-eQTL 6.40e-01 -0.0717 0.153 0.923 CD8_CTL L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 3.42e-01 0.166 0.175 0.923 CD8_CTL L2
ENSG00000079739 PGM1 -581530 sc-eQTL 9.72e-01 0.00559 0.156 0.923 CD8_Naive L2
ENSG00000088035 ALG6 -355694 sc-eQTL 5.31e-01 -0.102 0.162 0.923 CD8_Naive L2
ENSG00000116641 DOCK7 323495 sc-eQTL 9.45e-01 -0.0116 0.167 0.923 CD8_Naive L2
ENSG00000125703 ATG4C 227749 sc-eQTL 2.54e-01 -0.183 0.16 0.923 CD8_Naive L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.17e-01 -0.0169 0.163 0.923 CD8_Naive L2
ENSG00000162607 USP1 575584 sc-eQTL 6.95e-01 -0.054 0.137 0.923 CD8_Naive L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.41e-01 0.0717 0.153 0.923 CD8_Naive L2
ENSG00000079739 PGM1 -581530 sc-eQTL 7.88e-01 0.0466 0.173 0.921 CD8_TCM L2
ENSG00000088035 ALG6 -355694 sc-eQTL 7.44e-02 0.311 0.173 0.921 CD8_TCM L2
ENSG00000116641 DOCK7 323495 sc-eQTL 6.00e-01 0.0896 0.17 0.921 CD8_TCM L2
ENSG00000125703 ATG4C 227749 sc-eQTL 2.84e-01 -0.187 0.174 0.921 CD8_TCM L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.56e-02 -0.291 0.168 0.921 CD8_TCM L2
ENSG00000162607 USP1 575584 sc-eQTL 1.13e-01 -0.258 0.162 0.921 CD8_TCM L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 4.62e-01 -0.127 0.172 0.921 CD8_TCM L2
ENSG00000079739 PGM1 -581530 sc-eQTL 3.56e-01 -0.161 0.174 0.92 CD8_TEM L2
ENSG00000088035 ALG6 -355694 sc-eQTL 2.84e-02 0.382 0.173 0.92 CD8_TEM L2
ENSG00000116641 DOCK7 323495 sc-eQTL 7.86e-01 -0.0462 0.17 0.92 CD8_TEM L2
ENSG00000125703 ATG4C 227749 sc-eQTL 3.80e-03 0.468 0.16 0.92 CD8_TEM L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 3.96e-01 0.15 0.176 0.92 CD8_TEM L2
ENSG00000162607 USP1 575584 sc-eQTL 5.59e-01 -0.0987 0.169 0.92 CD8_TEM L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 3.62e-01 -0.156 0.171 0.92 CD8_TEM L2
ENSG00000079739 PGM1 -581530 sc-eQTL 9.79e-01 -0.0043 0.161 0.922 MAIT L2
ENSG00000088035 ALG6 -355694 sc-eQTL 9.90e-01 -0.00192 0.159 0.922 MAIT L2
ENSG00000116641 DOCK7 323495 sc-eQTL 6.42e-01 0.071 0.152 0.922 MAIT L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.48e-01 -0.122 0.16 0.922 MAIT L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 4.29e-01 0.127 0.161 0.922 MAIT L2
ENSG00000162607 USP1 575584 sc-eQTL 1.05e-01 0.259 0.159 0.922 MAIT L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 9.02e-01 0.0203 0.166 0.922 MAIT L2
ENSG00000079739 PGM1 -581530 sc-eQTL 4.13e-01 -0.133 0.162 0.922 NK_CD56bright L2
ENSG00000088035 ALG6 -355694 sc-eQTL 6.49e-01 0.0757 0.166 0.922 NK_CD56bright L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.86e-01 0.0785 0.144 0.922 NK_CD56bright L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.33e-01 0.126 0.161 0.922 NK_CD56bright L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 8.54e-01 -0.0308 0.167 0.922 NK_CD56bright L2
ENSG00000162607 USP1 575584 sc-eQTL 6.81e-01 -0.0711 0.173 0.922 NK_CD56bright L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 2.48e-01 -0.191 0.165 0.922 NK_CD56bright L2
ENSG00000079739 PGM1 -581530 sc-eQTL 4.68e-01 -0.0947 0.13 0.925 NK_CD56dim L2
ENSG00000088035 ALG6 -355694 sc-eQTL 2.91e-01 -0.174 0.165 0.925 NK_CD56dim L2
ENSG00000116641 DOCK7 323495 sc-eQTL 9.32e-01 0.0123 0.144 0.925 NK_CD56dim L2
ENSG00000125703 ATG4C 227749 sc-eQTL 7.89e-01 -0.0391 0.146 0.925 NK_CD56dim L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.06e-01 0.0196 0.166 0.925 NK_CD56dim L2
ENSG00000162607 USP1 575584 sc-eQTL 4.07e-03 0.459 0.158 0.925 NK_CD56dim L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 8.43e-01 0.0356 0.18 0.925 NK_CD56dim L2
ENSG00000079739 PGM1 -581530 sc-eQTL 4.02e-01 -0.15 0.179 0.927 NK_HLA L2
ENSG00000088035 ALG6 -355694 sc-eQTL 9.71e-03 0.476 0.182 0.927 NK_HLA L2
ENSG00000116641 DOCK7 323495 sc-eQTL 4.60e-01 0.105 0.142 0.927 NK_HLA L2
ENSG00000125703 ATG4C 227749 sc-eQTL 2.16e-01 -0.204 0.164 0.927 NK_HLA L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 2.50e-01 -0.199 0.173 0.927 NK_HLA L2
ENSG00000162607 USP1 575584 sc-eQTL 5.22e-01 -0.116 0.181 0.927 NK_HLA L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 2.92e-01 -0.174 0.165 0.927 NK_HLA L2
ENSG00000079739 PGM1 -581530 sc-eQTL 5.74e-01 -0.0807 0.143 0.925 NK_cytokine L2
ENSG00000088035 ALG6 -355694 sc-eQTL 4.02e-01 -0.136 0.162 0.925 NK_cytokine L2
ENSG00000116641 DOCK7 323495 sc-eQTL 3.33e-01 -0.145 0.15 0.925 NK_cytokine L2
ENSG00000125703 ATG4C 227749 sc-eQTL 5.01e-01 0.104 0.154 0.925 NK_cytokine L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 6.71e-01 -0.0677 0.159 0.925 NK_cytokine L2
ENSG00000162607 USP1 575584 sc-eQTL 1.02e-01 0.273 0.166 0.925 NK_cytokine L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 4.04e-01 0.142 0.169 0.925 NK_cytokine L2
ENSG00000079739 PGM1 -581530 sc-eQTL 9.14e-01 -0.0237 0.219 0.919 PB L2
ENSG00000088035 ALG6 -355694 sc-eQTL 4.01e-02 0.468 0.225 0.919 PB L2
ENSG00000116641 DOCK7 323495 sc-eQTL 2.78e-01 -0.266 0.244 0.919 PB L2
ENSG00000125703 ATG4C 227749 sc-eQTL 7.53e-01 0.0674 0.214 0.919 PB L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.66e-01 0.0637 0.214 0.919 PB L2
ENSG00000162607 USP1 575584 sc-eQTL 8.47e-01 0.0412 0.213 0.919 PB L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 8.58e-01 -0.0421 0.235 0.919 PB L2
ENSG00000079739 PGM1 -581530 sc-eQTL 4.14e-01 -0.124 0.151 0.922 Pro_T L2
ENSG00000088035 ALG6 -355694 sc-eQTL 6.64e-01 0.0669 0.154 0.922 Pro_T L2
ENSG00000116641 DOCK7 323495 sc-eQTL 1.37e-01 -0.23 0.154 0.922 Pro_T L2
ENSG00000125703 ATG4C 227749 sc-eQTL 2.16e-01 0.167 0.135 0.922 Pro_T L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 1.85e-01 -0.18 0.135 0.922 Pro_T L2
ENSG00000162607 USP1 575584 sc-eQTL 3.47e-01 -0.0877 0.0931 0.922 Pro_T L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 6.27e-01 -0.0766 0.158 0.922 Pro_T L2
ENSG00000079739 PGM1 -581530 sc-eQTL 2.40e-01 0.19 0.161 0.923 Treg L2
ENSG00000088035 ALG6 -355694 sc-eQTL 6.91e-01 0.0688 0.173 0.923 Treg L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.13e-01 -0.104 0.159 0.923 Treg L2
ENSG00000125703 ATG4C 227749 sc-eQTL 9.73e-01 0.00558 0.162 0.923 Treg L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 3.91e-02 0.349 0.168 0.923 Treg L2
ENSG00000162607 USP1 575584 sc-eQTL 9.19e-01 0.0167 0.164 0.923 Treg L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 3.44e-01 0.154 0.162 0.923 Treg L2
ENSG00000079739 PGM1 -581530 sc-eQTL 8.51e-01 -0.0305 0.162 0.92 cDC L2
ENSG00000088035 ALG6 -355694 sc-eQTL 5.33e-01 0.103 0.165 0.92 cDC L2
ENSG00000116641 DOCK7 323495 sc-eQTL 4.61e-01 -0.119 0.161 0.92 cDC L2
ENSG00000125703 ATG4C 227749 sc-eQTL 1.03e-01 0.228 0.139 0.92 cDC L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.44e-01 -0.0581 0.178 0.92 cDC L2
ENSG00000162607 USP1 575584 sc-eQTL 9.85e-01 -0.00306 0.158 0.92 cDC L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 1.20e-01 0.222 0.142 0.92 cDC L2
ENSG00000079739 PGM1 -581530 sc-eQTL 7.27e-01 0.0524 0.15 0.923 cMono_IL1B L2
ENSG00000088035 ALG6 -355694 sc-eQTL 1.74e-01 -0.204 0.15 0.923 cMono_IL1B L2
ENSG00000116641 DOCK7 323495 sc-eQTL 8.25e-01 0.0351 0.159 0.923 cMono_IL1B L2
ENSG00000125703 ATG4C 227749 sc-eQTL 8.98e-01 0.0143 0.112 0.923 cMono_IL1B L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.90e-01 0.0421 0.158 0.923 cMono_IL1B L2
ENSG00000162607 USP1 575584 sc-eQTL 8.84e-02 -0.237 0.138 0.923 cMono_IL1B L2
ENSG00000240563 L1TD1 817032 sc-eQTL 9.26e-01 0.013 0.14 0.923 cMono_IL1B L2
ENSG00000079739 PGM1 -581530 sc-eQTL 5.01e-01 0.112 0.167 0.923 cMono_S100A L2
ENSG00000088035 ALG6 -355694 sc-eQTL 4.56e-01 0.126 0.169 0.923 cMono_S100A L2
ENSG00000116641 DOCK7 323495 sc-eQTL 5.60e-01 -0.0916 0.157 0.923 cMono_S100A L2
ENSG00000125703 ATG4C 227749 sc-eQTL 4.24e-01 -0.109 0.136 0.923 cMono_S100A L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.37e-01 -0.0515 0.153 0.923 cMono_S100A L2
ENSG00000162607 USP1 575584 sc-eQTL 6.01e-01 -0.0825 0.158 0.923 cMono_S100A L2
ENSG00000240563 L1TD1 817032 sc-eQTL 8.15e-01 0.0307 0.131 0.923 cMono_S100A L2
ENSG00000079739 PGM1 -581530 sc-eQTL 7.67e-01 -0.053 0.179 0.918 gdT L2
ENSG00000088035 ALG6 -355694 sc-eQTL 1.86e-01 0.252 0.189 0.918 gdT L2
ENSG00000116641 DOCK7 323495 sc-eQTL 2.52e-01 -0.214 0.186 0.918 gdT L2
ENSG00000125703 ATG4C 227749 sc-eQTL 6.85e-01 0.0725 0.179 0.918 gdT L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 6.03e-01 -0.0989 0.19 0.918 gdT L2
ENSG00000162607 USP1 575584 sc-eQTL 5.49e-02 -0.343 0.177 0.918 gdT L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 8.57e-01 -0.0337 0.187 0.918 gdT L2
ENSG00000079739 PGM1 -581530 sc-eQTL 8.72e-01 -0.0274 0.17 0.922 intMono L2
ENSG00000088035 ALG6 -355694 sc-eQTL 7.36e-01 -0.0533 0.158 0.922 intMono L2
ENSG00000116641 DOCK7 323495 sc-eQTL 1.01e-02 0.413 0.159 0.922 intMono L2
ENSG00000125703 ATG4C 227749 sc-eQTL 9.68e-01 0.00628 0.154 0.922 intMono L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 5.94e-01 -0.0905 0.17 0.922 intMono L2
ENSG00000162607 USP1 575584 sc-eQTL 1.10e-01 0.275 0.172 0.922 intMono L2
ENSG00000240563 L1TD1 817032 sc-eQTL 9.55e-01 0.00722 0.127 0.922 intMono L2
ENSG00000079739 PGM1 -581530 sc-eQTL 9.66e-01 0.00644 0.149 0.919 ncMono L2
ENSG00000088035 ALG6 -355694 sc-eQTL 3.74e-01 -0.146 0.164 0.919 ncMono L2
ENSG00000116641 DOCK7 323495 sc-eQTL 2.82e-01 0.174 0.161 0.919 ncMono L2
ENSG00000125703 ATG4C 227749 sc-eQTL 5.54e-01 -0.0895 0.151 0.919 ncMono L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 7.39e-01 -0.0527 0.158 0.919 ncMono L2
ENSG00000162607 USP1 575584 sc-eQTL 8.89e-01 -0.0225 0.161 0.919 ncMono L2
ENSG00000240563 L1TD1 817032 sc-eQTL 5.42e-01 0.0699 0.114 0.919 ncMono L2
ENSG00000079739 PGM1 -581530 sc-eQTL 5.14e-01 0.117 0.179 0.924 pDC L2
ENSG00000088035 ALG6 -355694 sc-eQTL 6.43e-01 -0.0812 0.175 0.924 pDC L2
ENSG00000116641 DOCK7 323495 sc-eQTL 7.83e-01 -0.0494 0.179 0.924 pDC L2
ENSG00000125703 ATG4C 227749 sc-eQTL 1.76e-01 0.217 0.159 0.924 pDC L2
ENSG00000142856 ITGB3BP -581840 sc-eQTL 5.88e-01 0.0976 0.18 0.924 pDC L2
ENSG00000162607 USP1 575584 sc-eQTL 2.34e-01 0.218 0.182 0.924 pDC L2
ENSG00000203965 EFCAB7 -511491 sc-eQTL 2.82e-01 0.171 0.159 0.924 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -581530 sc-eQTL 3.96e-01 -0.135 0.158 0.923 B_Memory LOneK1K
ENSG00000088035 ALG6 -355694 sc-eQTL 6.34e-01 -0.0835 0.175 0.923 B_Memory LOneK1K
ENSG00000116641 DOCK7 323495 sc-eQTL 7.50e-01 0.0485 0.152 0.923 B_Memory LOneK1K
ENSG00000125703 ATG4C 227749 sc-eQTL 5.83e-01 0.0674 0.123 0.923 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -581840 sc-eQTL 1.51e-01 0.231 0.161 0.923 B_Memory LOneK1K
ENSG00000162607 USP1 575584 sc-eQTL 7.08e-01 -0.0589 0.157 0.923 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -511491 sc-eQTL 5.04e-01 -0.113 0.168 0.923 B_Memory LOneK1K
ENSG00000079739 PGM1 -581530 sc-eQTL 9.74e-01 0.00531 0.164 0.923 B_Naive LOneK1K
ENSG00000088035 ALG6 -355694 sc-eQTL 3.73e-01 0.151 0.169 0.923 B_Naive LOneK1K
ENSG00000116641 DOCK7 323495 sc-eQTL 7.65e-01 -0.0473 0.158 0.923 B_Naive LOneK1K
ENSG00000125703 ATG4C 227749 sc-eQTL 5.99e-01 0.0635 0.12 0.923 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -581840 sc-eQTL 6.36e-01 -0.0808 0.17 0.923 B_Naive LOneK1K
ENSG00000162607 USP1 575584 sc-eQTL 4.45e-01 -0.112 0.146 0.923 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -511491 sc-eQTL 4.44e-01 0.131 0.171 0.923 B_Naive LOneK1K
ENSG00000079739 PGM1 -581530 sc-eQTL 3.87e-01 0.133 0.153 0.923 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -355694 sc-eQTL 6.21e-01 -0.0737 0.149 0.923 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 323495 sc-eQTL 9.93e-01 -0.00124 0.15 0.923 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 227749 sc-eQTL 6.77e-01 -0.0433 0.104 0.923 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -581840 sc-eQTL 9.54e-01 -0.00882 0.153 0.923 CD14_Mono LOneK1K
ENSG00000162607 USP1 575584 sc-eQTL 2.01e-01 -0.167 0.13 0.923 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 817032 sc-eQTL 9.89e-01 0.00196 0.142 0.923 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -581530 sc-eQTL 8.59e-01 -0.0262 0.147 0.922 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -355694 sc-eQTL 5.70e-01 -0.0949 0.167 0.922 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 323495 sc-eQTL 1.60e-02 0.396 0.163 0.922 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 227749 sc-eQTL 6.46e-01 -0.0648 0.141 0.922 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -581840 sc-eQTL 4.25e-01 -0.131 0.163 0.922 CD16_Mono LOneK1K
ENSG00000162607 USP1 575584 sc-eQTL 4.23e-01 0.123 0.154 0.922 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 817032 sc-eQTL 5.72e-01 0.0593 0.105 0.922 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -581530 sc-eQTL 6.08e-01 -0.0653 0.127 0.925 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -355694 sc-eQTL 5.08e-01 -0.101 0.153 0.925 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 323495 sc-eQTL 7.74e-01 -0.0394 0.137 0.925 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 227749 sc-eQTL 9.72e-01 -0.00479 0.137 0.925 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -581840 sc-eQTL 5.28e-01 -0.102 0.162 0.925 NK_CD56dim LOneK1K
ENSG00000162607 USP1 575584 sc-eQTL 5.01e-03 0.409 0.144 0.925 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -511491 sc-eQTL 4.26e-01 0.143 0.179 0.925 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -581530 eQTL 0.0274 -0.0714 0.0323 0.0 0.0 0.0854
ENSG00000116652 DLEU2L -535201 eQTL 0.0484 0.0927 0.0469 0.00109 0.0 0.0854

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000203965 \N -511491 5.74e-07 2.56e-07 8.02e-08 2.48e-07 1.07e-07 1.26e-07 3.57e-07 8.11e-08 2.53e-07 1.5e-07 3.21e-07 2.11e-07 4.27e-07 9.15e-08 1.07e-07 1.39e-07 9.3e-08 2.93e-07 9.71e-08 7.26e-08 1.52e-07 2.3e-07 2.33e-07 7.94e-08 3.98e-07 1.94e-07 1.74e-07 1.7e-07 2.11e-07 2.59e-07 1.76e-07 5.46e-08 5.07e-08 1.21e-07 1.31e-07 5.14e-08 6.39e-08 5.36e-08 4.99e-08 8.3e-08 3.5e-08 2.71e-07 3.09e-08 7.32e-09 8.59e-08 8.59e-09 9.84e-08 2.71e-09 4.82e-08