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Genes within 1Mb (chr1:63008271:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -585140 sc-eQTL 6.71e-01 -0.0347 0.0817 0.314 B L1
ENSG00000088035 ALG6 -359304 sc-eQTL 5.22e-01 0.0543 0.0846 0.314 B L1
ENSG00000116641 DOCK7 319885 sc-eQTL 4.28e-02 -0.171 0.0839 0.314 B L1
ENSG00000125703 ATG4C 224139 sc-eQTL 5.52e-01 -0.035 0.0588 0.314 B L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.52e-01 0.0175 0.0937 0.314 B L1
ENSG00000162607 USP1 571974 sc-eQTL 1.76e-01 -0.11 0.081 0.314 B L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.10e-01 -0.049 0.0959 0.314 B L1
ENSG00000079739 PGM1 -585140 sc-eQTL 3.26e-01 -0.0697 0.0708 0.314 CD4T L1
ENSG00000088035 ALG6 -359304 sc-eQTL 6.68e-01 0.0336 0.0783 0.314 CD4T L1
ENSG00000116641 DOCK7 319885 sc-eQTL 9.68e-01 -0.00318 0.0793 0.314 CD4T L1
ENSG00000125703 ATG4C 224139 sc-eQTL 6.73e-01 -0.027 0.064 0.314 CD4T L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.54e-01 -0.0053 0.0909 0.314 CD4T L1
ENSG00000162607 USP1 571974 sc-eQTL 2.92e-01 -0.0654 0.0619 0.314 CD4T L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.31e-01 -0.0392 0.0815 0.314 CD4T L1
ENSG00000079739 PGM1 -585140 sc-eQTL 3.08e-01 -0.079 0.0773 0.314 CD8T L1
ENSG00000088035 ALG6 -359304 sc-eQTL 2.79e-01 0.0926 0.0852 0.314 CD8T L1
ENSG00000116641 DOCK7 319885 sc-eQTL 2.56e-01 -0.0984 0.0863 0.314 CD8T L1
ENSG00000125703 ATG4C 224139 sc-eQTL 5.85e-01 -0.045 0.0822 0.314 CD8T L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.73e-01 0.0266 0.092 0.314 CD8T L1
ENSG00000162607 USP1 571974 sc-eQTL 9.41e-01 -0.00529 0.0716 0.314 CD8T L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 8.94e-01 0.0122 0.0917 0.314 CD8T L1
ENSG00000079739 PGM1 -585140 sc-eQTL 5.67e-01 0.0497 0.0865 0.318 DC L1
ENSG00000088035 ALG6 -359304 sc-eQTL 6.30e-01 -0.0431 0.0893 0.318 DC L1
ENSG00000116641 DOCK7 319885 sc-eQTL 3.29e-01 0.0895 0.0914 0.318 DC L1
ENSG00000125703 ATG4C 224139 sc-eQTL 4.85e-01 0.0502 0.0716 0.318 DC L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 4.29e-01 -0.0793 0.1 0.318 DC L1
ENSG00000162607 USP1 571974 sc-eQTL 4.32e-01 -0.0687 0.0874 0.318 DC L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 2.24e-01 0.106 0.0869 0.318 DC L1
ENSG00000079739 PGM1 -585140 sc-eQTL 9.37e-01 0.00672 0.0855 0.314 Mono L1
ENSG00000088035 ALG6 -359304 sc-eQTL 9.45e-01 -0.00619 0.0892 0.314 Mono L1
ENSG00000116641 DOCK7 319885 sc-eQTL 3.53e-01 0.0801 0.0861 0.314 Mono L1
ENSG00000125703 ATG4C 224139 sc-eQTL 9.72e-01 -0.00203 0.0583 0.314 Mono L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.39e-01 0.088 0.0919 0.314 Mono L1
ENSG00000162607 USP1 571974 sc-eQTL 7.49e-01 -0.0242 0.0756 0.314 Mono L1
ENSG00000240563 L1TD1 813422 sc-eQTL 6.62e-01 0.0309 0.0706 0.314 Mono L1
ENSG00000079739 PGM1 -585140 sc-eQTL 5.58e-01 -0.0423 0.0721 0.313 NK L1
ENSG00000088035 ALG6 -359304 sc-eQTL 3.49e-01 0.0792 0.0844 0.313 NK L1
ENSG00000116641 DOCK7 319885 sc-eQTL 5.33e-01 -0.0435 0.0696 0.313 NK L1
ENSG00000125703 ATG4C 224139 sc-eQTL 1.52e-02 -0.181 0.0738 0.313 NK L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.95e-01 0.000536 0.093 0.313 NK L1
ENSG00000162607 USP1 571974 sc-eQTL 9.51e-01 -0.00512 0.0831 0.313 NK L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.73e-01 0.138 0.101 0.313 NK L1
ENSG00000079739 PGM1 -585140 sc-eQTL 5.25e-01 0.0522 0.0819 0.314 Other_T L1
ENSG00000088035 ALG6 -359304 sc-eQTL 3.32e-01 -0.0798 0.0822 0.314 Other_T L1
ENSG00000116641 DOCK7 319885 sc-eQTL 5.34e-01 -0.0523 0.084 0.314 Other_T L1
ENSG00000125703 ATG4C 224139 sc-eQTL 7.92e-02 -0.127 0.0723 0.314 Other_T L1
ENSG00000142856 ITGB3BP -585450 sc-eQTL 6.80e-01 -0.0266 0.0645 0.314 Other_T L1
ENSG00000162607 USP1 571974 sc-eQTL 6.96e-01 0.0219 0.0559 0.314 Other_T L1
ENSG00000203965 EFCAB7 -515101 sc-eQTL 4.07e-01 0.0826 0.0995 0.314 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -585140 sc-eQTL 3.54e-01 -0.102 0.11 0.316 B_Activated L2
ENSG00000088035 ALG6 -359304 sc-eQTL 2.33e-01 0.126 0.105 0.316 B_Activated L2
ENSG00000116641 DOCK7 319885 sc-eQTL 7.33e-01 0.0336 0.0985 0.316 B_Activated L2
ENSG00000125703 ATG4C 224139 sc-eQTL 8.87e-03 0.269 0.102 0.316 B_Activated L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.79e-01 -0.0284 0.101 0.316 B_Activated L2
ENSG00000162607 USP1 571974 sc-eQTL 7.81e-01 0.0306 0.11 0.316 B_Activated L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 5.48e-01 -0.0576 0.0957 0.316 B_Activated L2
ENSG00000079739 PGM1 -585140 sc-eQTL 5.69e-01 -0.0561 0.0982 0.313 B_Intermediate L2
ENSG00000088035 ALG6 -359304 sc-eQTL 2.22e-01 0.122 0.0995 0.313 B_Intermediate L2
ENSG00000116641 DOCK7 319885 sc-eQTL 4.15e-02 -0.194 0.0944 0.313 B_Intermediate L2
ENSG00000125703 ATG4C 224139 sc-eQTL 2.03e-02 -0.186 0.0797 0.313 B_Intermediate L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 6.45e-01 0.0444 0.0961 0.313 B_Intermediate L2
ENSG00000162607 USP1 571974 sc-eQTL 1.07e-01 0.154 0.0954 0.313 B_Intermediate L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.36e-01 0.0451 0.0952 0.313 B_Intermediate L2
ENSG00000079739 PGM1 -585140 sc-eQTL 7.44e-01 -0.0312 0.0954 0.317 B_Memory L2
ENSG00000088035 ALG6 -359304 sc-eQTL 6.28e-01 0.047 0.0969 0.317 B_Memory L2
ENSG00000116641 DOCK7 319885 sc-eQTL 8.76e-01 -0.0142 0.091 0.317 B_Memory L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.52e-01 0.124 0.086 0.317 B_Memory L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.58e-01 0.0306 0.0989 0.317 B_Memory L2
ENSG00000162607 USP1 571974 sc-eQTL 6.54e-01 -0.0448 0.0998 0.317 B_Memory L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.60e-01 0.138 0.0978 0.317 B_Memory L2
ENSG00000079739 PGM1 -585140 sc-eQTL 9.28e-01 -0.00872 0.0964 0.314 B_Naive1 L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.07e-01 -0.0237 0.0967 0.314 B_Naive1 L2
ENSG00000116641 DOCK7 319885 sc-eQTL 3.74e-01 -0.0824 0.0925 0.314 B_Naive1 L2
ENSG00000125703 ATG4C 224139 sc-eQTL 8.65e-01 0.0121 0.0714 0.314 B_Naive1 L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 4.36e-01 -0.0738 0.0946 0.314 B_Naive1 L2
ENSG00000162607 USP1 571974 sc-eQTL 3.36e-02 -0.176 0.0824 0.314 B_Naive1 L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.23e-01 -0.156 0.1 0.314 B_Naive1 L2
ENSG00000079739 PGM1 -585140 sc-eQTL 8.69e-01 0.016 0.0965 0.315 B_Naive2 L2
ENSG00000088035 ALG6 -359304 sc-eQTL 9.38e-01 -0.00781 0.101 0.315 B_Naive2 L2
ENSG00000116641 DOCK7 319885 sc-eQTL 9.30e-01 0.0085 0.0968 0.315 B_Naive2 L2
ENSG00000125703 ATG4C 224139 sc-eQTL 3.70e-01 -0.0836 0.093 0.315 B_Naive2 L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 2.64e-01 0.113 0.101 0.315 B_Naive2 L2
ENSG00000162607 USP1 571974 sc-eQTL 8.73e-01 0.0154 0.0961 0.315 B_Naive2 L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 8.22e-01 0.0226 0.1 0.315 B_Naive2 L2
ENSG00000079739 PGM1 -585140 sc-eQTL 2.06e-01 0.123 0.097 0.314 CD4_CTL L2
ENSG00000088035 ALG6 -359304 sc-eQTL 2.97e-01 -0.107 0.103 0.314 CD4_CTL L2
ENSG00000116641 DOCK7 319885 sc-eQTL 4.61e-01 -0.0664 0.0899 0.314 CD4_CTL L2
ENSG00000125703 ATG4C 224139 sc-eQTL 3.92e-01 -0.0797 0.093 0.314 CD4_CTL L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.45e-01 0.0195 0.0996 0.314 CD4_CTL L2
ENSG00000162607 USP1 571974 sc-eQTL 5.74e-01 0.0534 0.0947 0.314 CD4_CTL L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.11e-01 0.151 0.0941 0.314 CD4_CTL L2
ENSG00000079739 PGM1 -585140 sc-eQTL 2.40e-01 -0.093 0.079 0.314 CD4_Naive L2
ENSG00000088035 ALG6 -359304 sc-eQTL 6.11e-01 0.0438 0.086 0.314 CD4_Naive L2
ENSG00000116641 DOCK7 319885 sc-eQTL 7.47e-01 -0.0273 0.0846 0.314 CD4_Naive L2
ENSG00000125703 ATG4C 224139 sc-eQTL 6.43e-01 0.0347 0.0747 0.314 CD4_Naive L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.47e-01 0.00606 0.0914 0.314 CD4_Naive L2
ENSG00000162607 USP1 571974 sc-eQTL 1.83e-01 -0.093 0.0695 0.314 CD4_Naive L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 5.66e-01 -0.0521 0.0907 0.314 CD4_Naive L2
ENSG00000079739 PGM1 -585140 sc-eQTL 6.45e-01 -0.0379 0.082 0.314 CD4_TCM L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.86e-01 0.0137 0.0953 0.314 CD4_TCM L2
ENSG00000116641 DOCK7 319885 sc-eQTL 6.68e-02 0.154 0.0838 0.314 CD4_TCM L2
ENSG00000125703 ATG4C 224139 sc-eQTL 2.53e-01 -0.0939 0.082 0.314 CD4_TCM L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.77e-01 0.015 0.0969 0.314 CD4_TCM L2
ENSG00000162607 USP1 571974 sc-eQTL 8.95e-01 -0.0105 0.0795 0.314 CD4_TCM L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.73e-01 0.0397 0.0938 0.314 CD4_TCM L2
ENSG00000079739 PGM1 -585140 sc-eQTL 7.24e-01 0.034 0.096 0.314 CD4_TEM L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.69e-01 -0.0159 0.0965 0.314 CD4_TEM L2
ENSG00000116641 DOCK7 319885 sc-eQTL 1.81e-01 -0.126 0.0936 0.314 CD4_TEM L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.29e-01 -0.139 0.0908 0.314 CD4_TEM L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.06e-01 -0.0112 0.0943 0.314 CD4_TEM L2
ENSG00000162607 USP1 571974 sc-eQTL 7.41e-02 -0.159 0.0886 0.314 CD4_TEM L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 3.23e-01 -0.0965 0.0975 0.314 CD4_TEM L2
ENSG00000079739 PGM1 -585140 sc-eQTL 6.55e-01 0.0403 0.0901 0.314 CD8_CTL L2
ENSG00000088035 ALG6 -359304 sc-eQTL 9.51e-01 0.00593 0.0958 0.314 CD8_CTL L2
ENSG00000116641 DOCK7 319885 sc-eQTL 9.24e-01 0.00867 0.091 0.314 CD8_CTL L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.97e-01 -0.125 0.0964 0.314 CD8_CTL L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.23e-01 0.00977 0.101 0.314 CD8_CTL L2
ENSG00000162607 USP1 571974 sc-eQTL 9.34e-01 -0.00751 0.0902 0.314 CD8_CTL L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 7.55e-01 -0.0322 0.103 0.314 CD8_CTL L2
ENSG00000079739 PGM1 -585140 sc-eQTL 3.67e-02 -0.186 0.0885 0.314 CD8_Naive L2
ENSG00000088035 ALG6 -359304 sc-eQTL 4.45e-01 0.0707 0.0925 0.314 CD8_Naive L2
ENSG00000116641 DOCK7 319885 sc-eQTL 2.59e-03 -0.286 0.0937 0.314 CD8_Naive L2
ENSG00000125703 ATG4C 224139 sc-eQTL 5.15e-02 -0.178 0.0911 0.314 CD8_Naive L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.04e-01 -0.0354 0.093 0.314 CD8_Naive L2
ENSG00000162607 USP1 571974 sc-eQTL 8.64e-01 -0.0135 0.0787 0.314 CD8_Naive L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 8.17e-01 0.0204 0.0877 0.314 CD8_Naive L2
ENSG00000079739 PGM1 -585140 sc-eQTL 8.74e-01 0.016 0.101 0.303 CD8_TCM L2
ENSG00000088035 ALG6 -359304 sc-eQTL 3.83e-01 0.0893 0.102 0.303 CD8_TCM L2
ENSG00000116641 DOCK7 319885 sc-eQTL 6.04e-01 -0.0519 0.0999 0.303 CD8_TCM L2
ENSG00000125703 ATG4C 224139 sc-eQTL 7.61e-01 -0.0311 0.102 0.303 CD8_TCM L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.39e-01 -0.0331 0.0993 0.303 CD8_TCM L2
ENSG00000162607 USP1 571974 sc-eQTL 9.29e-01 0.00857 0.0956 0.303 CD8_TCM L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.99e-01 -0.13 0.101 0.303 CD8_TCM L2
ENSG00000079739 PGM1 -585140 sc-eQTL 5.28e-01 0.063 0.0997 0.311 CD8_TEM L2
ENSG00000088035 ALG6 -359304 sc-eQTL 9.11e-01 0.0113 0.1 0.311 CD8_TEM L2
ENSG00000116641 DOCK7 319885 sc-eQTL 1.82e-01 -0.129 0.0966 0.311 CD8_TEM L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.96e-01 0.12 0.0929 0.311 CD8_TEM L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 5.96e-01 -0.0537 0.101 0.311 CD8_TEM L2
ENSG00000162607 USP1 571974 sc-eQTL 5.17e-01 0.0625 0.0963 0.311 CD8_TEM L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 4.04e-01 -0.0818 0.0978 0.311 CD8_TEM L2
ENSG00000079739 PGM1 -585140 sc-eQTL 8.95e-01 -0.0126 0.0952 0.316 MAIT L2
ENSG00000088035 ALG6 -359304 sc-eQTL 1.44e-02 -0.229 0.0929 0.316 MAIT L2
ENSG00000116641 DOCK7 319885 sc-eQTL 3.77e-01 -0.0797 0.0901 0.316 MAIT L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.34e-02 -0.234 0.0938 0.316 MAIT L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 7.39e-01 -0.0319 0.0953 0.316 MAIT L2
ENSG00000162607 USP1 571974 sc-eQTL 4.81e-01 0.0668 0.0945 0.316 MAIT L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 3.77e-01 0.0868 0.098 0.316 MAIT L2
ENSG00000079739 PGM1 -585140 sc-eQTL 2.84e-01 -0.103 0.0961 0.309 NK_CD56bright L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.67e-01 0.0165 0.0988 0.309 NK_CD56bright L2
ENSG00000116641 DOCK7 319885 sc-eQTL 5.86e-01 0.0467 0.0856 0.309 NK_CD56bright L2
ENSG00000125703 ATG4C 224139 sc-eQTL 3.52e-01 -0.0891 0.0955 0.309 NK_CD56bright L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.94e-01 -0.000762 0.0996 0.309 NK_CD56bright L2
ENSG00000162607 USP1 571974 sc-eQTL 8.55e-01 -0.0187 0.103 0.309 NK_CD56bright L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 2.45e-01 0.114 0.0979 0.309 NK_CD56bright L2
ENSG00000079739 PGM1 -585140 sc-eQTL 7.32e-01 -0.0257 0.0751 0.312 NK_CD56dim L2
ENSG00000088035 ALG6 -359304 sc-eQTL 5.86e-01 -0.052 0.0952 0.312 NK_CD56dim L2
ENSG00000116641 DOCK7 319885 sc-eQTL 3.25e-02 -0.177 0.082 0.312 NK_CD56dim L2
ENSG00000125703 ATG4C 224139 sc-eQTL 1.68e-01 -0.116 0.0838 0.312 NK_CD56dim L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.28e-01 -0.00867 0.0958 0.312 NK_CD56dim L2
ENSG00000162607 USP1 571974 sc-eQTL 6.81e-01 0.0383 0.0929 0.312 NK_CD56dim L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 4.71e-01 0.0746 0.103 0.312 NK_CD56dim L2
ENSG00000079739 PGM1 -585140 sc-eQTL 4.48e-01 -0.0782 0.103 0.313 NK_HLA L2
ENSG00000088035 ALG6 -359304 sc-eQTL 2.47e-01 0.124 0.106 0.313 NK_HLA L2
ENSG00000116641 DOCK7 319885 sc-eQTL 2.86e-01 0.0871 0.0815 0.313 NK_HLA L2
ENSG00000125703 ATG4C 224139 sc-eQTL 2.82e-01 -0.102 0.0947 0.313 NK_HLA L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.77e-01 0.0881 0.0996 0.313 NK_HLA L2
ENSG00000162607 USP1 571974 sc-eQTL 8.96e-01 -0.0137 0.104 0.313 NK_HLA L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.16e-01 0.0477 0.095 0.313 NK_HLA L2
ENSG00000079739 PGM1 -585140 sc-eQTL 1.00e+00 -2.38e-06 0.0824 0.312 NK_cytokine L2
ENSG00000088035 ALG6 -359304 sc-eQTL 3.37e-02 0.197 0.0921 0.312 NK_cytokine L2
ENSG00000116641 DOCK7 319885 sc-eQTL 5.97e-01 -0.0457 0.0862 0.312 NK_cytokine L2
ENSG00000125703 ATG4C 224139 sc-eQTL 6.69e-02 -0.161 0.0876 0.312 NK_cytokine L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.39e-01 -0.0875 0.0912 0.312 NK_cytokine L2
ENSG00000162607 USP1 571974 sc-eQTL 7.30e-01 -0.0332 0.0961 0.312 NK_cytokine L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.11e-01 0.0496 0.0973 0.312 NK_cytokine L2
ENSG00000079739 PGM1 -585140 sc-eQTL 9.08e-01 -0.0136 0.118 0.315 PB L2
ENSG00000088035 ALG6 -359304 sc-eQTL 5.66e-01 0.0712 0.124 0.315 PB L2
ENSG00000116641 DOCK7 319885 sc-eQTL 6.13e-01 -0.067 0.132 0.315 PB L2
ENSG00000125703 ATG4C 224139 sc-eQTL 4.41e-01 0.0889 0.115 0.315 PB L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.74e-01 0.0183 0.115 0.315 PB L2
ENSG00000162607 USP1 571974 sc-eQTL 6.26e-01 0.0559 0.115 0.315 PB L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 9.08e-01 0.0146 0.126 0.315 PB L2
ENSG00000079739 PGM1 -585140 sc-eQTL 3.64e-01 0.0815 0.0895 0.313 Pro_T L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.26e-01 0.0201 0.0912 0.313 Pro_T L2
ENSG00000116641 DOCK7 319885 sc-eQTL 4.59e-01 -0.0678 0.0914 0.313 Pro_T L2
ENSG00000125703 ATG4C 224139 sc-eQTL 7.27e-01 0.028 0.0801 0.313 Pro_T L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.58e-01 0.0144 0.0804 0.313 Pro_T L2
ENSG00000162607 USP1 571974 sc-eQTL 9.34e-01 0.00459 0.0553 0.313 Pro_T L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 6.55e-01 -0.0417 0.0934 0.313 Pro_T L2
ENSG00000079739 PGM1 -585140 sc-eQTL 6.45e-01 -0.0437 0.0947 0.314 Treg L2
ENSG00000088035 ALG6 -359304 sc-eQTL 6.73e-01 -0.0428 0.101 0.314 Treg L2
ENSG00000116641 DOCK7 319885 sc-eQTL 2.36e-01 -0.11 0.0927 0.314 Treg L2
ENSG00000125703 ATG4C 224139 sc-eQTL 5.94e-01 -0.0508 0.095 0.314 Treg L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.54e-01 -0.0184 0.0994 0.314 Treg L2
ENSG00000162607 USP1 571974 sc-eQTL 6.65e-01 0.0418 0.0962 0.314 Treg L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.87e-01 0.125 0.0947 0.314 Treg L2
ENSG00000079739 PGM1 -585140 sc-eQTL 3.05e-01 0.098 0.0953 0.32 cDC L2
ENSG00000088035 ALG6 -359304 sc-eQTL 4.19e-01 0.0783 0.0967 0.32 cDC L2
ENSG00000116641 DOCK7 319885 sc-eQTL 9.24e-01 -0.00902 0.0951 0.32 cDC L2
ENSG00000125703 ATG4C 224139 sc-eQTL 7.14e-01 -0.0302 0.0825 0.32 cDC L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.75e-01 -0.0928 0.104 0.32 cDC L2
ENSG00000162607 USP1 571974 sc-eQTL 2.59e-01 -0.105 0.0928 0.32 cDC L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 7.83e-01 0.0232 0.0841 0.32 cDC L2
ENSG00000079739 PGM1 -585140 sc-eQTL 8.15e-01 0.0209 0.0893 0.314 cMono_IL1B L2
ENSG00000088035 ALG6 -359304 sc-eQTL 8.41e-01 0.018 0.0894 0.314 cMono_IL1B L2
ENSG00000116641 DOCK7 319885 sc-eQTL 8.36e-02 0.163 0.0936 0.314 cMono_IL1B L2
ENSG00000125703 ATG4C 224139 sc-eQTL 2.18e-01 -0.0815 0.066 0.314 cMono_IL1B L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.67e-01 -0.0158 0.0939 0.314 cMono_IL1B L2
ENSG00000162607 USP1 571974 sc-eQTL 3.07e-01 -0.0846 0.0826 0.314 cMono_IL1B L2
ENSG00000240563 L1TD1 813422 sc-eQTL 8.57e-01 0.015 0.0832 0.314 cMono_IL1B L2
ENSG00000079739 PGM1 -585140 sc-eQTL 6.93e-01 0.0392 0.0992 0.314 cMono_S100A L2
ENSG00000088035 ALG6 -359304 sc-eQTL 1.90e-01 -0.132 0.1 0.314 cMono_S100A L2
ENSG00000116641 DOCK7 319885 sc-eQTL 2.72e-01 -0.102 0.093 0.314 cMono_S100A L2
ENSG00000125703 ATG4C 224139 sc-eQTL 3.85e-01 0.0701 0.0806 0.314 cMono_S100A L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 1.00e-01 0.149 0.0905 0.314 cMono_S100A L2
ENSG00000162607 USP1 571974 sc-eQTL 8.39e-01 0.019 0.0937 0.314 cMono_S100A L2
ENSG00000240563 L1TD1 813422 sc-eQTL 5.80e-01 -0.0431 0.0779 0.314 cMono_S100A L2
ENSG00000079739 PGM1 -585140 sc-eQTL 4.68e-01 -0.0821 0.113 0.321 gdT L2
ENSG00000088035 ALG6 -359304 sc-eQTL 9.22e-01 -0.0119 0.12 0.321 gdT L2
ENSG00000116641 DOCK7 319885 sc-eQTL 7.39e-01 -0.0394 0.118 0.321 gdT L2
ENSG00000125703 ATG4C 224139 sc-eQTL 4.06e-01 -0.0939 0.113 0.321 gdT L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.33e-01 -0.0102 0.12 0.321 gdT L2
ENSG00000162607 USP1 571974 sc-eQTL 4.73e-01 -0.0815 0.113 0.321 gdT L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 3.15e-01 0.118 0.118 0.321 gdT L2
ENSG00000079739 PGM1 -585140 sc-eQTL 9.19e-01 0.0102 0.1 0.313 intMono L2
ENSG00000088035 ALG6 -359304 sc-eQTL 1.82e-01 0.124 0.0928 0.313 intMono L2
ENSG00000116641 DOCK7 319885 sc-eQTL 3.86e-01 0.0826 0.095 0.313 intMono L2
ENSG00000125703 ATG4C 224139 sc-eQTL 8.52e-01 0.017 0.0909 0.313 intMono L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 5.57e-01 0.0589 0.1 0.313 intMono L2
ENSG00000162607 USP1 571974 sc-eQTL 3.41e-01 0.0969 0.102 0.313 intMono L2
ENSG00000240563 L1TD1 813422 sc-eQTL 4.49e-01 0.0567 0.0748 0.313 intMono L2
ENSG00000079739 PGM1 -585140 sc-eQTL 5.59e-01 0.0543 0.0927 0.308 ncMono L2
ENSG00000088035 ALG6 -359304 sc-eQTL 3.11e-01 0.103 0.102 0.308 ncMono L2
ENSG00000116641 DOCK7 319885 sc-eQTL 9.63e-01 -0.00466 0.1 0.308 ncMono L2
ENSG00000125703 ATG4C 224139 sc-eQTL 5.49e-01 0.0562 0.0937 0.308 ncMono L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 1.49e-01 0.141 0.0975 0.308 ncMono L2
ENSG00000162607 USP1 571974 sc-eQTL 6.76e-01 -0.0419 0.1 0.308 ncMono L2
ENSG00000240563 L1TD1 813422 sc-eQTL 3.09e-01 0.0724 0.0709 0.308 ncMono L2
ENSG00000079739 PGM1 -585140 sc-eQTL 3.53e-01 0.101 0.108 0.322 pDC L2
ENSG00000088035 ALG6 -359304 sc-eQTL 2.73e-01 -0.115 0.105 0.322 pDC L2
ENSG00000116641 DOCK7 319885 sc-eQTL 9.05e-02 0.182 0.107 0.322 pDC L2
ENSG00000125703 ATG4C 224139 sc-eQTL 4.72e-01 0.0694 0.0963 0.322 pDC L2
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.45e-01 -0.102 0.108 0.322 pDC L2
ENSG00000162607 USP1 571974 sc-eQTL 6.53e-01 -0.0497 0.11 0.322 pDC L2
ENSG00000203965 EFCAB7 -515101 sc-eQTL 1.33e-01 0.144 0.0952 0.322 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -585140 sc-eQTL 9.29e-01 -0.00805 0.0908 0.314 B_Memory LOneK1K
ENSG00000088035 ALG6 -359304 sc-eQTL 6.77e-02 0.183 0.0996 0.314 B_Memory LOneK1K
ENSG00000116641 DOCK7 319885 sc-eQTL 3.26e-02 -0.185 0.0862 0.314 B_Memory LOneK1K
ENSG00000125703 ATG4C 224139 sc-eQTL 4.92e-01 -0.0484 0.0704 0.314 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -585450 sc-eQTL 8.16e-01 0.0216 0.0926 0.314 B_Memory LOneK1K
ENSG00000162607 USP1 571974 sc-eQTL 2.69e-01 0.0994 0.0896 0.314 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -515101 sc-eQTL 8.72e-01 0.0155 0.0965 0.314 B_Memory LOneK1K
ENSG00000079739 PGM1 -585140 sc-eQTL 9.10e-01 0.0107 0.0943 0.314 B_Naive LOneK1K
ENSG00000088035 ALG6 -359304 sc-eQTL 7.12e-01 -0.0359 0.0971 0.314 B_Naive LOneK1K
ENSG00000116641 DOCK7 319885 sc-eQTL 3.13e-01 -0.0916 0.0905 0.314 B_Naive LOneK1K
ENSG00000125703 ATG4C 224139 sc-eQTL 5.27e-01 -0.0438 0.0692 0.314 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.63e-01 -0.00451 0.0979 0.314 B_Naive LOneK1K
ENSG00000162607 USP1 571974 sc-eQTL 7.49e-02 -0.149 0.0835 0.314 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -515101 sc-eQTL 2.99e-01 -0.102 0.0981 0.314 B_Naive LOneK1K
ENSG00000079739 PGM1 -585140 sc-eQTL 9.21e-01 0.00916 0.0917 0.314 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -359304 sc-eQTL 7.59e-01 -0.0273 0.0888 0.314 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 319885 sc-eQTL 4.43e-01 0.0686 0.0893 0.314 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 224139 sc-eQTL 5.72e-01 -0.035 0.0617 0.314 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -585450 sc-eQTL 4.97e-01 0.0622 0.0913 0.314 CD14_Mono LOneK1K
ENSG00000162607 USP1 571974 sc-eQTL 9.75e-01 -0.00243 0.0781 0.314 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 813422 sc-eQTL 7.29e-01 -0.0294 0.0847 0.314 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -585140 sc-eQTL 3.92e-01 0.0745 0.0868 0.315 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -359304 sc-eQTL 3.27e-01 0.0969 0.0986 0.315 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 319885 sc-eQTL 1.41e-01 0.144 0.0972 0.315 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 224139 sc-eQTL 4.76e-01 0.0594 0.0832 0.315 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -585450 sc-eQTL 3.16e-01 0.0971 0.0965 0.315 CD16_Mono LOneK1K
ENSG00000162607 USP1 571974 sc-eQTL 3.78e-01 0.0802 0.0907 0.315 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 813422 sc-eQTL 2.03e-01 0.0788 0.0618 0.315 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -585140 sc-eQTL 8.54e-01 -0.0135 0.0732 0.312 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -359304 sc-eQTL 3.92e-01 0.0752 0.0877 0.312 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 319885 sc-eQTL 1.46e-01 -0.114 0.0783 0.312 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 224139 sc-eQTL 2.00e-02 -0.182 0.0775 0.312 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -585450 sc-eQTL 9.34e-01 -0.00777 0.0931 0.312 NK_CD56dim LOneK1K
ENSG00000162607 USP1 571974 sc-eQTL 8.58e-01 0.0151 0.0845 0.312 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -515101 sc-eQTL 2.59e-01 0.116 0.103 0.312 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -359304 1.28e-06 9.09e-07 3.32e-07 3.65e-07 2.69e-07 4.35e-07 9.97e-07 3.46e-07 1.11e-06 3.77e-07 1.36e-06 6.06e-07 1.57e-06 2.54e-07 4.4e-07 7.19e-07 7.74e-07 5.8e-07 5.54e-07 6.25e-07 3.91e-07 1.08e-06 7.15e-07 5.98e-07 1.86e-06 3.66e-07 6.75e-07 6.23e-07 9.39e-07 1.06e-06 5.42e-07 7.37e-08 2.27e-07 5.45e-07 4.25e-07 4.18e-07 4.13e-07 1.4e-07 2.17e-07 9.07e-08 3.03e-07 1.26e-06 6.12e-08 2.64e-08 1.88e-07 8.76e-08 2.3e-07 8.67e-08 1.07e-07