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Genes within 1Mb (chr1:63004516:A:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -588895 sc-eQTL 9.42e-01 -0.0054 0.0748 0.564 B L1
ENSG00000088035 ALG6 -363059 sc-eQTL 6.69e-01 -0.0331 0.0774 0.564 B L1
ENSG00000116641 DOCK7 316130 sc-eQTL 3.57e-01 0.0714 0.0773 0.564 B L1
ENSG00000125703 ATG4C 220384 sc-eQTL 2.88e-01 0.0572 0.0537 0.564 B L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.51e-01 -0.0512 0.0856 0.564 B L1
ENSG00000162607 USP1 568219 sc-eQTL 7.55e-01 0.0232 0.0743 0.564 B L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 9.92e-01 0.00093 0.0878 0.564 B L1
ENSG00000079739 PGM1 -588895 sc-eQTL 6.07e-01 0.0327 0.0635 0.564 CD4T L1
ENSG00000088035 ALG6 -363059 sc-eQTL 4.50e-01 -0.053 0.0701 0.564 CD4T L1
ENSG00000116641 DOCK7 316130 sc-eQTL 8.31e-01 -0.0152 0.071 0.564 CD4T L1
ENSG00000125703 ATG4C 220384 sc-eQTL 1.94e-01 0.0744 0.0571 0.564 CD4T L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.73e-01 -0.0459 0.0813 0.564 CD4T L1
ENSG00000162607 USP1 568219 sc-eQTL 8.73e-01 0.00891 0.0556 0.564 CD4T L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.49e-01 0.0841 0.0728 0.564 CD4T L1
ENSG00000079739 PGM1 -588895 sc-eQTL 4.33e-01 0.0553 0.0704 0.564 CD8T L1
ENSG00000088035 ALG6 -363059 sc-eQTL 7.84e-01 0.0213 0.0777 0.564 CD8T L1
ENSG00000116641 DOCK7 316130 sc-eQTL 8.17e-01 0.0182 0.0788 0.564 CD8T L1
ENSG00000125703 ATG4C 220384 sc-eQTL 5.11e-01 0.0493 0.0747 0.564 CD8T L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 3.61e-01 -0.0764 0.0835 0.564 CD8T L1
ENSG00000162607 USP1 568219 sc-eQTL 2.93e-01 -0.0685 0.065 0.564 CD8T L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 5.60e-01 0.0486 0.0833 0.564 CD8T L1
ENSG00000079739 PGM1 -588895 sc-eQTL 2.27e-01 -0.0943 0.0778 0.556 DC L1
ENSG00000088035 ALG6 -363059 sc-eQTL 5.61e-01 0.0469 0.0805 0.556 DC L1
ENSG00000116641 DOCK7 316130 sc-eQTL 1.97e-01 -0.106 0.0822 0.556 DC L1
ENSG00000125703 ATG4C 220384 sc-eQTL 5.29e-01 -0.0407 0.0645 0.556 DC L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.16e-01 0.0735 0.0901 0.556 DC L1
ENSG00000162607 USP1 568219 sc-eQTL 5.89e-01 0.0427 0.0788 0.556 DC L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 8.71e-01 -0.0128 0.0786 0.556 DC L1
ENSG00000079739 PGM1 -588895 sc-eQTL 1.68e-01 0.106 0.0765 0.564 Mono L1
ENSG00000088035 ALG6 -363059 sc-eQTL 7.95e-01 -0.0209 0.0801 0.564 Mono L1
ENSG00000116641 DOCK7 316130 sc-eQTL 5.78e-01 -0.0431 0.0775 0.564 Mono L1
ENSG00000125703 ATG4C 220384 sc-eQTL 3.85e-01 -0.0455 0.0523 0.564 Mono L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.09e-01 -0.104 0.0825 0.564 Mono L1
ENSG00000162607 USP1 568219 sc-eQTL 3.89e-01 -0.0586 0.0679 0.564 Mono L1
ENSG00000240563 L1TD1 809667 sc-eQTL 6.54e-01 -0.0285 0.0634 0.564 Mono L1
ENSG00000079739 PGM1 -588895 sc-eQTL 8.06e-01 -0.0161 0.0655 0.564 NK L1
ENSG00000088035 ALG6 -363059 sc-eQTL 3.26e-01 -0.0755 0.0766 0.564 NK L1
ENSG00000116641 DOCK7 316130 sc-eQTL 2.99e-01 0.0657 0.0631 0.564 NK L1
ENSG00000125703 ATG4C 220384 sc-eQTL 1.66e-02 0.162 0.067 0.564 NK L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.33e-01 -0.0662 0.0843 0.564 NK L1
ENSG00000162607 USP1 568219 sc-eQTL 1.82e-01 0.101 0.0751 0.564 NK L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 6.63e-01 -0.04 0.0916 0.564 NK L1
ENSG00000079739 PGM1 -588895 sc-eQTL 4.48e-01 -0.057 0.0749 0.564 Other_T L1
ENSG00000088035 ALG6 -363059 sc-eQTL 5.17e-01 0.0488 0.0753 0.564 Other_T L1
ENSG00000116641 DOCK7 316130 sc-eQTL 6.72e-01 -0.0326 0.0769 0.564 Other_T L1
ENSG00000125703 ATG4C 220384 sc-eQTL 1.08e-01 0.107 0.0662 0.564 Other_T L1
ENSG00000142856 ITGB3BP -589205 sc-eQTL 7.73e-01 0.017 0.0591 0.564 Other_T L1
ENSG00000162607 USP1 568219 sc-eQTL 3.61e-01 -0.0468 0.0511 0.564 Other_T L1
ENSG00000203965 EFCAB7 -518856 sc-eQTL 4.73e-01 -0.0655 0.0911 0.564 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -588895 sc-eQTL 6.22e-01 0.05 0.101 0.564 B_Activated L2
ENSG00000088035 ALG6 -363059 sc-eQTL 1.97e-01 -0.125 0.0965 0.564 B_Activated L2
ENSG00000116641 DOCK7 316130 sc-eQTL 4.90e-01 0.0623 0.0901 0.564 B_Activated L2
ENSG00000125703 ATG4C 220384 sc-eQTL 2.61e-02 -0.21 0.0936 0.564 B_Activated L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 8.75e-01 0.0146 0.0927 0.564 B_Activated L2
ENSG00000162607 USP1 568219 sc-eQTL 9.49e-01 -0.00648 0.101 0.564 B_Activated L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.65e-01 0.0977 0.0875 0.564 B_Activated L2
ENSG00000079739 PGM1 -588895 sc-eQTL 3.84e-01 -0.0792 0.0907 0.567 B_Intermediate L2
ENSG00000088035 ALG6 -363059 sc-eQTL 2.98e-01 -0.0961 0.0921 0.567 B_Intermediate L2
ENSG00000116641 DOCK7 316130 sc-eQTL 5.59e-01 0.0516 0.0881 0.567 B_Intermediate L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.72e-02 0.177 0.0736 0.567 B_Intermediate L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 7.22e-01 -0.0317 0.0889 0.567 B_Intermediate L2
ENSG00000162607 USP1 568219 sc-eQTL 1.66e-01 -0.123 0.0884 0.567 B_Intermediate L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 1.46e-01 -0.128 0.0876 0.567 B_Intermediate L2
ENSG00000079739 PGM1 -588895 sc-eQTL 8.97e-01 -0.0115 0.0883 0.56 B_Memory L2
ENSG00000088035 ALG6 -363059 sc-eQTL 2.40e-01 -0.105 0.0895 0.56 B_Memory L2
ENSG00000116641 DOCK7 316130 sc-eQTL 5.80e-01 0.0466 0.0842 0.56 B_Memory L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.95e-01 -0.104 0.0797 0.56 B_Memory L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.98e-01 0.0621 0.0915 0.56 B_Memory L2
ENSG00000162607 USP1 568219 sc-eQTL 9.25e-01 0.00875 0.0924 0.56 B_Memory L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 5.65e-02 -0.173 0.0902 0.56 B_Memory L2
ENSG00000079739 PGM1 -588895 sc-eQTL 9.35e-01 -0.00727 0.0885 0.564 B_Naive1 L2
ENSG00000088035 ALG6 -363059 sc-eQTL 5.76e-01 0.0497 0.0887 0.564 B_Naive1 L2
ENSG00000116641 DOCK7 316130 sc-eQTL 7.83e-01 -0.0235 0.0851 0.564 B_Naive1 L2
ENSG00000125703 ATG4C 220384 sc-eQTL 5.57e-01 0.0385 0.0655 0.564 B_Naive1 L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 8.56e-01 0.0158 0.087 0.564 B_Naive1 L2
ENSG00000162607 USP1 568219 sc-eQTL 1.39e-01 0.113 0.0761 0.564 B_Naive1 L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 1.41e-01 0.136 0.0923 0.564 B_Naive1 L2
ENSG00000079739 PGM1 -588895 sc-eQTL 6.58e-01 -0.039 0.088 0.562 B_Naive2 L2
ENSG00000088035 ALG6 -363059 sc-eQTL 3.29e-01 0.0897 0.0916 0.562 B_Naive2 L2
ENSG00000116641 DOCK7 316130 sc-eQTL 2.88e-01 0.0938 0.088 0.562 B_Naive2 L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.56e-01 0.12 0.0845 0.562 B_Naive2 L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.15e-01 -0.114 0.0918 0.562 B_Naive2 L2
ENSG00000162607 USP1 568219 sc-eQTL 4.90e-01 -0.0605 0.0876 0.562 B_Naive2 L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 8.64e-01 0.0157 0.0917 0.562 B_Naive2 L2
ENSG00000079739 PGM1 -588895 sc-eQTL 4.19e-01 -0.0719 0.0889 0.564 CD4_CTL L2
ENSG00000088035 ALG6 -363059 sc-eQTL 5.33e-01 0.0587 0.094 0.564 CD4_CTL L2
ENSG00000116641 DOCK7 316130 sc-eQTL 2.90e-01 0.0871 0.0821 0.564 CD4_CTL L2
ENSG00000125703 ATG4C 220384 sc-eQTL 4.23e-01 0.0683 0.085 0.564 CD4_CTL L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.84e-01 -0.0638 0.0909 0.564 CD4_CTL L2
ENSG00000162607 USP1 568219 sc-eQTL 9.18e-02 -0.146 0.086 0.564 CD4_CTL L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 4.12e-02 -0.176 0.0856 0.564 CD4_CTL L2
ENSG00000079739 PGM1 -588895 sc-eQTL 4.78e-01 0.0507 0.0713 0.564 CD4_Naive L2
ENSG00000088035 ALG6 -363059 sc-eQTL 4.28e-01 -0.0615 0.0775 0.564 CD4_Naive L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.04e-01 -0.00917 0.0762 0.564 CD4_Naive L2
ENSG00000125703 ATG4C 220384 sc-eQTL 8.24e-01 0.015 0.0674 0.564 CD4_Naive L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 7.52e-01 -0.0261 0.0823 0.564 CD4_Naive L2
ENSG00000162607 USP1 568219 sc-eQTL 6.34e-01 0.03 0.0629 0.564 CD4_Naive L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.41e-01 0.0958 0.0815 0.564 CD4_Naive L2
ENSG00000079739 PGM1 -588895 sc-eQTL 6.74e-01 0.0312 0.0742 0.564 CD4_TCM L2
ENSG00000088035 ALG6 -363059 sc-eQTL 6.54e-01 -0.0387 0.0861 0.564 CD4_TCM L2
ENSG00000116641 DOCK7 316130 sc-eQTL 1.63e-01 -0.106 0.076 0.564 CD4_TCM L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.32e-01 0.112 0.0739 0.564 CD4_TCM L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.30e-01 -0.105 0.0873 0.564 CD4_TCM L2
ENSG00000162607 USP1 568219 sc-eQTL 7.21e-01 0.0257 0.0718 0.564 CD4_TCM L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 9.40e-01 -0.00634 0.0848 0.564 CD4_TCM L2
ENSG00000079739 PGM1 -588895 sc-eQTL 6.16e-01 0.0439 0.0874 0.564 CD4_TEM L2
ENSG00000088035 ALG6 -363059 sc-eQTL 7.64e-01 0.0264 0.0879 0.564 CD4_TEM L2
ENSG00000116641 DOCK7 316130 sc-eQTL 4.50e-01 0.0648 0.0856 0.564 CD4_TEM L2
ENSG00000125703 ATG4C 220384 sc-eQTL 7.35e-02 0.149 0.0826 0.564 CD4_TEM L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 6.24e-01 -0.0422 0.0859 0.564 CD4_TEM L2
ENSG00000162607 USP1 568219 sc-eQTL 9.35e-01 0.00661 0.0814 0.564 CD4_TEM L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 3.04e-01 0.0916 0.0888 0.564 CD4_TEM L2
ENSG00000079739 PGM1 -588895 sc-eQTL 9.04e-01 0.00965 0.08 0.564 CD8_CTL L2
ENSG00000088035 ALG6 -363059 sc-eQTL 5.10e-01 0.0561 0.085 0.564 CD8_CTL L2
ENSG00000116641 DOCK7 316130 sc-eQTL 2.63e-01 -0.0903 0.0805 0.564 CD8_CTL L2
ENSG00000125703 ATG4C 220384 sc-eQTL 2.31e-01 0.103 0.0857 0.564 CD8_CTL L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 6.13e-01 -0.0452 0.0893 0.564 CD8_CTL L2
ENSG00000162607 USP1 568219 sc-eQTL 1.60e-01 -0.112 0.0797 0.564 CD8_CTL L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 9.04e-02 0.155 0.0909 0.564 CD8_CTL L2
ENSG00000079739 PGM1 -588895 sc-eQTL 1.88e-01 0.107 0.0813 0.564 CD8_Naive L2
ENSG00000088035 ALG6 -363059 sc-eQTL 6.30e-01 -0.0408 0.0845 0.564 CD8_Naive L2
ENSG00000116641 DOCK7 316130 sc-eQTL 3.05e-02 0.188 0.0864 0.564 CD8_Naive L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.61e-01 0.117 0.0835 0.564 CD8_Naive L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 6.25e-01 -0.0416 0.0849 0.564 CD8_Naive L2
ENSG00000162607 USP1 568219 sc-eQTL 3.52e-01 -0.0668 0.0717 0.564 CD8_Naive L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 6.21e-01 -0.0396 0.08 0.564 CD8_Naive L2
ENSG00000079739 PGM1 -588895 sc-eQTL 7.72e-01 -0.0264 0.0911 0.569 CD8_TCM L2
ENSG00000088035 ALG6 -363059 sc-eQTL 8.91e-01 -0.0126 0.0922 0.569 CD8_TCM L2
ENSG00000116641 DOCK7 316130 sc-eQTL 6.65e-01 0.039 0.09 0.569 CD8_TCM L2
ENSG00000125703 ATG4C 220384 sc-eQTL 9.41e-01 -0.00682 0.092 0.569 CD8_TCM L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 6.17e-01 -0.0447 0.0894 0.569 CD8_TCM L2
ENSG00000162607 USP1 568219 sc-eQTL 3.62e-01 -0.0784 0.0859 0.569 CD8_TCM L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.54e-01 0.104 0.0909 0.569 CD8_TCM L2
ENSG00000079739 PGM1 -588895 sc-eQTL 2.18e-01 -0.112 0.0906 0.568 CD8_TEM L2
ENSG00000088035 ALG6 -363059 sc-eQTL 3.32e-01 0.0886 0.0911 0.568 CD8_TEM L2
ENSG00000116641 DOCK7 316130 sc-eQTL 8.15e-01 0.0207 0.0885 0.568 CD8_TEM L2
ENSG00000125703 ATG4C 220384 sc-eQTL 7.42e-01 -0.028 0.0851 0.568 CD8_TEM L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.38e-01 0.0568 0.092 0.568 CD8_TEM L2
ENSG00000162607 USP1 568219 sc-eQTL 1.87e-01 -0.116 0.0875 0.568 CD8_TEM L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 7.11e-01 0.0332 0.0893 0.568 CD8_TEM L2
ENSG00000079739 PGM1 -588895 sc-eQTL 3.43e-01 -0.0816 0.0858 0.561 MAIT L2
ENSG00000088035 ALG6 -363059 sc-eQTL 1.51e-01 0.122 0.0847 0.561 MAIT L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.34e-01 -0.00672 0.0816 0.561 MAIT L2
ENSG00000125703 ATG4C 220384 sc-eQTL 6.85e-02 0.156 0.0853 0.561 MAIT L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.65e-01 0.063 0.086 0.561 MAIT L2
ENSG00000162607 USP1 568219 sc-eQTL 6.88e-01 -0.0343 0.0855 0.561 MAIT L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 3.87e-01 -0.0768 0.0886 0.561 MAIT L2
ENSG00000079739 PGM1 -588895 sc-eQTL 7.52e-01 0.0272 0.0859 0.567 NK_CD56bright L2
ENSG00000088035 ALG6 -363059 sc-eQTL 9.86e-01 0.00152 0.0881 0.567 NK_CD56bright L2
ENSG00000116641 DOCK7 316130 sc-eQTL 6.17e-01 0.0382 0.0763 0.567 NK_CD56bright L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.53e-01 0.122 0.0848 0.567 NK_CD56bright L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 8.18e-01 0.0205 0.0888 0.567 NK_CD56bright L2
ENSG00000162607 USP1 568219 sc-eQTL 4.62e-01 -0.0674 0.0914 0.567 NK_CD56bright L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.14e-01 -0.109 0.0872 0.567 NK_CD56bright L2
ENSG00000079739 PGM1 -588895 sc-eQTL 9.39e-01 0.00525 0.0683 0.567 NK_CD56dim L2
ENSG00000088035 ALG6 -363059 sc-eQTL 8.64e-01 0.0149 0.0867 0.567 NK_CD56dim L2
ENSG00000116641 DOCK7 316130 sc-eQTL 1.14e-01 0.119 0.075 0.567 NK_CD56dim L2
ENSG00000125703 ATG4C 220384 sc-eQTL 3.98e-01 0.0648 0.0765 0.567 NK_CD56dim L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 9.03e-01 0.0107 0.0872 0.567 NK_CD56dim L2
ENSG00000162607 USP1 568219 sc-eQTL 2.87e-01 0.09 0.0843 0.567 NK_CD56dim L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 8.29e-01 -0.0204 0.0942 0.567 NK_CD56dim L2
ENSG00000079739 PGM1 -588895 sc-eQTL 9.26e-01 -0.0085 0.092 0.568 NK_HLA L2
ENSG00000088035 ALG6 -363059 sc-eQTL 9.78e-01 0.00258 0.0954 0.568 NK_HLA L2
ENSG00000116641 DOCK7 316130 sc-eQTL 5.38e-01 -0.045 0.0728 0.568 NK_HLA L2
ENSG00000125703 ATG4C 220384 sc-eQTL 7.12e-01 0.0313 0.0848 0.568 NK_HLA L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 1.33e-02 -0.219 0.0877 0.568 NK_HLA L2
ENSG00000162607 USP1 568219 sc-eQTL 7.98e-01 -0.0239 0.0932 0.568 NK_HLA L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 6.19e-01 -0.0422 0.0847 0.568 NK_HLA L2
ENSG00000079739 PGM1 -588895 sc-eQTL 5.94e-01 -0.0401 0.075 0.567 NK_cytokine L2
ENSG00000088035 ALG6 -363059 sc-eQTL 2.76e-02 -0.186 0.0839 0.567 NK_cytokine L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.55e-01 0.00445 0.0786 0.567 NK_cytokine L2
ENSG00000125703 ATG4C 220384 sc-eQTL 1.39e-02 0.197 0.0792 0.567 NK_cytokine L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 7.63e-01 0.0251 0.0833 0.567 NK_cytokine L2
ENSG00000162607 USP1 568219 sc-eQTL 1.25e-01 0.134 0.0871 0.567 NK_cytokine L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 9.67e-01 -0.00364 0.0887 0.567 NK_cytokine L2
ENSG00000079739 PGM1 -588895 sc-eQTL 3.68e-01 0.0961 0.106 0.563 PB L2
ENSG00000088035 ALG6 -363059 sc-eQTL 8.64e-01 0.0192 0.112 0.563 PB L2
ENSG00000116641 DOCK7 316130 sc-eQTL 8.46e-01 0.0233 0.12 0.563 PB L2
ENSG00000125703 ATG4C 220384 sc-eQTL 2.29e-01 -0.126 0.104 0.563 PB L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 9.07e-01 -0.0123 0.104 0.563 PB L2
ENSG00000162607 USP1 568219 sc-eQTL 7.28e-01 -0.0362 0.104 0.563 PB L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 8.10e-01 0.0276 0.115 0.563 PB L2
ENSG00000079739 PGM1 -588895 sc-eQTL 7.96e-01 -0.0209 0.0807 0.563 Pro_T L2
ENSG00000088035 ALG6 -363059 sc-eQTL 7.08e-01 -0.0308 0.082 0.563 Pro_T L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.30e-01 -0.00724 0.0823 0.563 Pro_T L2
ENSG00000125703 ATG4C 220384 sc-eQTL 7.67e-01 0.0214 0.0721 0.563 Pro_T L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.60e-01 -0.0422 0.0723 0.563 Pro_T L2
ENSG00000162607 USP1 568219 sc-eQTL 1.86e-01 -0.0656 0.0495 0.563 Pro_T L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 5.32e-01 0.0526 0.0839 0.563 Pro_T L2
ENSG00000079739 PGM1 -588895 sc-eQTL 5.78e-01 0.0477 0.0856 0.564 Treg L2
ENSG00000088035 ALG6 -363059 sc-eQTL 4.61e-01 0.0676 0.0915 0.564 Treg L2
ENSG00000116641 DOCK7 316130 sc-eQTL 2.72e-01 0.0924 0.0839 0.564 Treg L2
ENSG00000125703 ATG4C 220384 sc-eQTL 6.71e-01 -0.0365 0.0859 0.564 Treg L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 9.70e-01 -0.00336 0.0899 0.564 Treg L2
ENSG00000162607 USP1 568219 sc-eQTL 9.83e-01 0.00188 0.087 0.564 Treg L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 7.07e-01 -0.0324 0.086 0.564 Treg L2
ENSG00000079739 PGM1 -588895 sc-eQTL 1.50e-01 -0.126 0.0871 0.556 cDC L2
ENSG00000088035 ALG6 -363059 sc-eQTL 7.67e-01 0.0263 0.0888 0.556 cDC L2
ENSG00000116641 DOCK7 316130 sc-eQTL 4.51e-01 -0.0657 0.087 0.556 cDC L2
ENSG00000125703 ATG4C 220384 sc-eQTL 4.41e-01 0.0583 0.0756 0.556 cDC L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.16e-01 0.119 0.0955 0.556 cDC L2
ENSG00000162607 USP1 568219 sc-eQTL 5.50e-01 0.0511 0.0853 0.556 cDC L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.48e-01 0.0891 0.0768 0.556 cDC L2
ENSG00000079739 PGM1 -588895 sc-eQTL 4.00e-01 0.0676 0.0801 0.564 cMono_IL1B L2
ENSG00000088035 ALG6 -363059 sc-eQTL 4.37e-01 -0.0625 0.0802 0.564 cMono_IL1B L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.98e-02 -0.139 0.0842 0.564 cMono_IL1B L2
ENSG00000125703 ATG4C 220384 sc-eQTL 3.39e-01 0.057 0.0595 0.564 cMono_IL1B L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 8.31e-01 -0.018 0.0844 0.564 cMono_IL1B L2
ENSG00000162607 USP1 568219 sc-eQTL 5.02e-01 -0.05 0.0744 0.564 cMono_IL1B L2
ENSG00000240563 L1TD1 809667 sc-eQTL 6.95e-01 -0.0293 0.0747 0.564 cMono_IL1B L2
ENSG00000079739 PGM1 -588895 sc-eQTL 6.14e-01 0.045 0.0891 0.564 cMono_S100A L2
ENSG00000088035 ALG6 -363059 sc-eQTL 1.19e-01 0.141 0.0898 0.564 cMono_S100A L2
ENSG00000116641 DOCK7 316130 sc-eQTL 1.92e-01 0.109 0.0834 0.564 cMono_S100A L2
ENSG00000125703 ATG4C 220384 sc-eQTL 2.83e-02 -0.158 0.0717 0.564 cMono_S100A L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 1.88e-02 -0.191 0.0808 0.564 cMono_S100A L2
ENSG00000162607 USP1 568219 sc-eQTL 3.51e-01 -0.0785 0.084 0.564 cMono_S100A L2
ENSG00000240563 L1TD1 809667 sc-eQTL 4.76e-01 0.05 0.07 0.564 cMono_S100A L2
ENSG00000079739 PGM1 -588895 sc-eQTL 5.01e-01 0.0666 0.0987 0.561 gdT L2
ENSG00000088035 ALG6 -363059 sc-eQTL 2.41e-01 0.123 0.105 0.561 gdT L2
ENSG00000116641 DOCK7 316130 sc-eQTL 9.43e-01 0.00744 0.103 0.561 gdT L2
ENSG00000125703 ATG4C 220384 sc-eQTL 5.16e-01 0.0642 0.0986 0.561 gdT L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 9.18e-01 -0.0108 0.105 0.561 gdT L2
ENSG00000162607 USP1 568219 sc-eQTL 5.65e-01 -0.0572 0.0991 0.561 gdT L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 4.35e-01 -0.0806 0.103 0.561 gdT L2
ENSG00000079739 PGM1 -588895 sc-eQTL 9.93e-01 -0.000766 0.0893 0.562 intMono L2
ENSG00000088035 ALG6 -363059 sc-eQTL 2.77e-01 -0.0903 0.0829 0.562 intMono L2
ENSG00000116641 DOCK7 316130 sc-eQTL 6.80e-01 0.035 0.0849 0.562 intMono L2
ENSG00000125703 ATG4C 220384 sc-eQTL 9.42e-01 -0.00587 0.081 0.562 intMono L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.15e-01 -0.0728 0.0891 0.562 intMono L2
ENSG00000162607 USP1 568219 sc-eQTL 7.87e-01 0.0246 0.0908 0.562 intMono L2
ENSG00000240563 L1TD1 809667 sc-eQTL 1.49e-01 -0.0962 0.0664 0.562 intMono L2
ENSG00000079739 PGM1 -588895 sc-eQTL 6.77e-01 0.034 0.0813 0.563 ncMono L2
ENSG00000088035 ALG6 -363059 sc-eQTL 6.07e-02 -0.167 0.0886 0.563 ncMono L2
ENSG00000116641 DOCK7 316130 sc-eQTL 4.15e-01 0.0717 0.0878 0.563 ncMono L2
ENSG00000125703 ATG4C 220384 sc-eQTL 3.61e-01 -0.0751 0.082 0.563 ncMono L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.77e-01 -0.0935 0.0857 0.563 ncMono L2
ENSG00000162607 USP1 568219 sc-eQTL 8.65e-01 0.015 0.0878 0.563 ncMono L2
ENSG00000240563 L1TD1 809667 sc-eQTL 9.97e-01 -0.000239 0.0623 0.563 ncMono L2
ENSG00000079739 PGM1 -588895 sc-eQTL 3.09e-01 -0.102 0.0998 0.551 pDC L2
ENSG00000088035 ALG6 -363059 sc-eQTL 7.52e-01 0.0308 0.0975 0.551 pDC L2
ENSG00000116641 DOCK7 316130 sc-eQTL 8.50e-02 -0.171 0.0987 0.551 pDC L2
ENSG00000125703 ATG4C 220384 sc-eQTL 7.48e-01 -0.0288 0.0893 0.551 pDC L2
ENSG00000142856 ITGB3BP -589205 sc-eQTL 4.76e-01 0.0715 0.1 0.551 pDC L2
ENSG00000162607 USP1 568219 sc-eQTL 6.54e-01 0.046 0.102 0.551 pDC L2
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.76e-01 -0.0967 0.0884 0.551 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -588895 sc-eQTL 2.19e-01 -0.103 0.0832 0.564 B_Memory LOneK1K
ENSG00000088035 ALG6 -363059 sc-eQTL 1.26e-02 -0.229 0.091 0.564 B_Memory LOneK1K
ENSG00000116641 DOCK7 316130 sc-eQTL 1.09e-01 0.128 0.0797 0.564 B_Memory LOneK1K
ENSG00000125703 ATG4C 220384 sc-eQTL 2.74e-01 0.0709 0.0646 0.564 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -589205 sc-eQTL 6.26e-01 0.0415 0.0851 0.564 B_Memory LOneK1K
ENSG00000162607 USP1 568219 sc-eQTL 2.70e-01 -0.0911 0.0824 0.564 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -518856 sc-eQTL 1.49e-01 -0.128 0.0883 0.564 B_Memory LOneK1K
ENSG00000079739 PGM1 -588895 sc-eQTL 6.85e-01 -0.0351 0.0864 0.564 B_Naive LOneK1K
ENSG00000088035 ALG6 -363059 sc-eQTL 3.30e-01 0.0867 0.0888 0.564 B_Naive LOneK1K
ENSG00000116641 DOCK7 316130 sc-eQTL 7.83e-01 0.023 0.0831 0.564 B_Naive LOneK1K
ENSG00000125703 ATG4C 220384 sc-eQTL 2.47e-01 0.0734 0.0632 0.564 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.09e-01 -0.0593 0.0896 0.564 B_Naive LOneK1K
ENSG00000162607 USP1 568219 sc-eQTL 3.26e-01 0.0757 0.0769 0.564 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -518856 sc-eQTL 2.47e-01 0.104 0.0898 0.564 B_Naive LOneK1K
ENSG00000079739 PGM1 -588895 sc-eQTL 2.33e-01 0.0982 0.0821 0.564 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -363059 sc-eQTL 9.09e-01 0.00915 0.0798 0.564 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 316130 sc-eQTL 5.30e-01 -0.0505 0.0802 0.564 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 220384 sc-eQTL 6.59e-01 -0.0245 0.0555 0.564 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -589205 sc-eQTL 1.93e-01 -0.107 0.0818 0.564 CD14_Mono LOneK1K
ENSG00000162607 USP1 568219 sc-eQTL 1.37e-01 -0.104 0.0698 0.564 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 809667 sc-eQTL 9.36e-01 -0.00608 0.0761 0.564 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -588895 sc-eQTL 9.62e-01 -0.00373 0.0778 0.562 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -363059 sc-eQTL 1.69e-01 -0.121 0.0879 0.562 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 316130 sc-eQTL 9.38e-01 0.00681 0.0874 0.562 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 220384 sc-eQTL 4.87e-01 -0.0518 0.0744 0.562 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -589205 sc-eQTL 2.39e-01 -0.102 0.0862 0.562 CD16_Mono LOneK1K
ENSG00000162607 USP1 568219 sc-eQTL 6.83e-01 -0.0333 0.0812 0.562 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 809667 sc-eQTL 4.88e-01 -0.0384 0.0554 0.562 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -588895 sc-eQTL 8.29e-01 -0.0144 0.0667 0.567 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -363059 sc-eQTL 3.20e-01 -0.0796 0.0799 0.567 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 316130 sc-eQTL 2.73e-01 0.0785 0.0715 0.567 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 220384 sc-eQTL 3.05e-02 0.154 0.0708 0.567 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -589205 sc-eQTL 5.15e-01 -0.0553 0.0847 0.567 NK_CD56dim LOneK1K
ENSG00000162607 USP1 568219 sc-eQTL 8.37e-02 0.133 0.0765 0.567 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -518856 sc-eQTL 7.01e-01 -0.036 0.0937 0.567 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -363059 1.2e-06 8.72e-07 2.88e-07 3.1e-07 1.87e-07 3.3e-07 7.53e-07 3.3e-07 1.03e-06 3.11e-07 1.11e-06 6.07e-07 1.43e-06 2.08e-07 4.26e-07 5.69e-07 7.73e-07 5.33e-07 3.77e-07 4.19e-07 3.07e-07 8.19e-07 6.18e-07 4.55e-07 1.57e-06 2.99e-07 6.03e-07 4.75e-07 8.4e-07 9.11e-07 4.54e-07 3.75e-08 1.72e-07 3.51e-07 3.4e-07 3.1e-07 3.12e-07 1.58e-07 1.54e-07 9.67e-09 2.19e-07 9.76e-07 7.6e-08 1.92e-08 1.7e-07 7.64e-08 1.85e-07 8.97e-08 8.83e-08