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Genes within 1Mb (chr1:62990562:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -602849 sc-eQTL 9.97e-01 -0.000386 0.12 0.891 B L1
ENSG00000088035 ALG6 -377013 sc-eQTL 3.17e-01 -0.124 0.124 0.891 B L1
ENSG00000116641 DOCK7 302176 sc-eQTL 2.44e-01 0.144 0.124 0.891 B L1
ENSG00000125703 ATG4C 206430 sc-eQTL 2.83e-01 0.0925 0.086 0.891 B L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 2.64e-01 0.153 0.137 0.891 B L1
ENSG00000162607 USP1 554265 sc-eQTL 2.84e-01 -0.128 0.119 0.891 B L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 5.98e-01 -0.0741 0.14 0.891 B L1
ENSG00000079739 PGM1 -602849 sc-eQTL 8.00e-01 0.0261 0.103 0.891 CD4T L1
ENSG00000088035 ALG6 -377013 sc-eQTL 8.18e-01 -0.0261 0.114 0.891 CD4T L1
ENSG00000116641 DOCK7 302176 sc-eQTL 5.33e-01 -0.0719 0.115 0.891 CD4T L1
ENSG00000125703 ATG4C 206430 sc-eQTL 8.86e-01 -0.0134 0.093 0.891 CD4T L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 4.41e-01 0.102 0.132 0.891 CD4T L1
ENSG00000162607 USP1 554265 sc-eQTL 6.60e-02 -0.165 0.0895 0.891 CD4T L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 7.00e-02 -0.214 0.118 0.891 CD4T L1
ENSG00000079739 PGM1 -602849 sc-eQTL 7.25e-01 -0.0405 0.115 0.891 CD8T L1
ENSG00000088035 ALG6 -377013 sc-eQTL 4.21e-01 0.102 0.127 0.891 CD8T L1
ENSG00000116641 DOCK7 302176 sc-eQTL 2.72e-01 -0.141 0.128 0.891 CD8T L1
ENSG00000125703 ATG4C 206430 sc-eQTL 1.54e-01 -0.174 0.121 0.891 CD8T L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 4.33e-01 -0.107 0.136 0.891 CD8T L1
ENSG00000162607 USP1 554265 sc-eQTL 3.16e-01 0.107 0.106 0.891 CD8T L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 8.44e-01 -0.0269 0.136 0.891 CD8T L1
ENSG00000079739 PGM1 -602849 sc-eQTL 1.36e-01 0.188 0.126 0.89 DC L1
ENSG00000088035 ALG6 -377013 sc-eQTL 7.77e-01 -0.037 0.13 0.89 DC L1
ENSG00000116641 DOCK7 302176 sc-eQTL 6.70e-01 -0.057 0.134 0.89 DC L1
ENSG00000125703 ATG4C 206430 sc-eQTL 7.33e-01 0.0357 0.105 0.89 DC L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 3.93e-01 -0.125 0.146 0.89 DC L1
ENSG00000162607 USP1 554265 sc-eQTL 4.20e-01 0.103 0.128 0.89 DC L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 2.47e-01 0.147 0.127 0.89 DC L1
ENSG00000079739 PGM1 -602849 sc-eQTL 5.85e-01 -0.0674 0.123 0.891 Mono L1
ENSG00000088035 ALG6 -377013 sc-eQTL 8.88e-01 -0.0181 0.129 0.891 Mono L1
ENSG00000116641 DOCK7 302176 sc-eQTL 9.71e-01 0.0045 0.124 0.891 Mono L1
ENSG00000125703 ATG4C 206430 sc-eQTL 8.45e-01 0.0165 0.0841 0.891 Mono L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.77e-01 -0.00386 0.133 0.891 Mono L1
ENSG00000162607 USP1 554265 sc-eQTL 7.36e-01 -0.0369 0.109 0.891 Mono L1
ENSG00000240563 L1TD1 795713 sc-eQTL 9.24e-01 -0.00969 0.102 0.891 Mono L1
ENSG00000079739 PGM1 -602849 sc-eQTL 5.78e-01 -0.0589 0.106 0.891 NK L1
ENSG00000088035 ALG6 -377013 sc-eQTL 9.39e-01 0.0095 0.124 0.891 NK L1
ENSG00000116641 DOCK7 302176 sc-eQTL 4.56e-01 0.0762 0.102 0.891 NK L1
ENSG00000125703 ATG4C 206430 sc-eQTL 6.30e-01 -0.0528 0.11 0.891 NK L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.86e-01 -0.00239 0.136 0.891 NK L1
ENSG00000162607 USP1 554265 sc-eQTL 2.92e-01 -0.128 0.121 0.891 NK L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 6.20e-01 -0.0735 0.148 0.891 NK L1
ENSG00000079739 PGM1 -602849 sc-eQTL 3.68e-01 -0.108 0.12 0.891 Other_T L1
ENSG00000088035 ALG6 -377013 sc-eQTL 6.05e-01 -0.0626 0.121 0.891 Other_T L1
ENSG00000116641 DOCK7 302176 sc-eQTL 7.01e-01 -0.0475 0.123 0.891 Other_T L1
ENSG00000125703 ATG4C 206430 sc-eQTL 7.31e-01 0.0368 0.107 0.891 Other_T L1
ENSG00000142856 ITGB3BP -603159 sc-eQTL 1.45e-01 -0.138 0.0943 0.891 Other_T L1
ENSG00000162607 USP1 554265 sc-eQTL 4.81e-01 0.058 0.0821 0.891 Other_T L1
ENSG00000203965 EFCAB7 -532810 sc-eQTL 9.07e-01 0.0172 0.146 0.891 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -602849 sc-eQTL 3.68e-01 0.145 0.161 0.888 B_Activated L2
ENSG00000088035 ALG6 -377013 sc-eQTL 2.00e-01 0.197 0.154 0.888 B_Activated L2
ENSG00000116641 DOCK7 302176 sc-eQTL 2.88e-01 -0.153 0.143 0.888 B_Activated L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.03e-01 0.0185 0.151 0.888 B_Activated L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 4.95e-01 0.101 0.147 0.888 B_Activated L2
ENSG00000162607 USP1 554265 sc-eQTL 4.62e-01 0.118 0.16 0.888 B_Activated L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 3.24e-01 -0.138 0.139 0.888 B_Activated L2
ENSG00000079739 PGM1 -602849 sc-eQTL 2.50e-01 -0.164 0.142 0.891 B_Intermediate L2
ENSG00000088035 ALG6 -377013 sc-eQTL 5.51e-01 0.0863 0.145 0.891 B_Intermediate L2
ENSG00000116641 DOCK7 302176 sc-eQTL 3.03e-01 0.142 0.138 0.891 B_Intermediate L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.21e-01 0.0116 0.117 0.891 B_Intermediate L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.31e-02 0.258 0.138 0.891 B_Intermediate L2
ENSG00000162607 USP1 554265 sc-eQTL 9.31e-01 0.0121 0.139 0.891 B_Intermediate L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 1.51e-01 -0.198 0.137 0.891 B_Intermediate L2
ENSG00000079739 PGM1 -602849 sc-eQTL 8.71e-01 0.0229 0.141 0.89 B_Memory L2
ENSG00000088035 ALG6 -377013 sc-eQTL 9.94e-01 0.00104 0.144 0.89 B_Memory L2
ENSG00000116641 DOCK7 302176 sc-eQTL 7.95e-03 0.355 0.132 0.89 B_Memory L2
ENSG00000125703 ATG4C 206430 sc-eQTL 8.02e-01 -0.0322 0.128 0.89 B_Memory L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.41e-01 0.0896 0.146 0.89 B_Memory L2
ENSG00000162607 USP1 554265 sc-eQTL 7.37e-01 0.0496 0.148 0.89 B_Memory L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 2.11e-01 0.182 0.145 0.89 B_Memory L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.82e-01 -0.0999 0.142 0.891 B_Naive1 L2
ENSG00000088035 ALG6 -377013 sc-eQTL 5.00e-02 -0.278 0.141 0.891 B_Naive1 L2
ENSG00000116641 DOCK7 302176 sc-eQTL 9.39e-01 -0.0104 0.136 0.891 B_Naive1 L2
ENSG00000125703 ATG4C 206430 sc-eQTL 5.21e-01 0.0676 0.105 0.891 B_Naive1 L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.64e-01 0.0806 0.139 0.891 B_Naive1 L2
ENSG00000162607 USP1 554265 sc-eQTL 3.90e-01 -0.105 0.122 0.891 B_Naive1 L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 8.49e-01 -0.0283 0.149 0.891 B_Naive1 L2
ENSG00000079739 PGM1 -602849 sc-eQTL 1.89e-01 0.183 0.139 0.891 B_Naive2 L2
ENSG00000088035 ALG6 -377013 sc-eQTL 8.37e-01 -0.03 0.146 0.891 B_Naive2 L2
ENSG00000116641 DOCK7 302176 sc-eQTL 6.52e-01 0.0633 0.14 0.891 B_Naive2 L2
ENSG00000125703 ATG4C 206430 sc-eQTL 1.01e-01 0.22 0.134 0.891 B_Naive2 L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 7.11e-01 0.0541 0.146 0.891 B_Naive2 L2
ENSG00000162607 USP1 554265 sc-eQTL 4.95e-02 -0.272 0.138 0.891 B_Naive2 L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 1.03e-01 0.237 0.144 0.891 B_Naive2 L2
ENSG00000079739 PGM1 -602849 sc-eQTL 5.79e-01 0.0807 0.145 0.895 CD4_CTL L2
ENSG00000088035 ALG6 -377013 sc-eQTL 9.03e-01 0.0187 0.154 0.895 CD4_CTL L2
ENSG00000116641 DOCK7 302176 sc-eQTL 2.51e-01 0.154 0.134 0.895 CD4_CTL L2
ENSG00000125703 ATG4C 206430 sc-eQTL 7.30e-01 -0.0481 0.139 0.895 CD4_CTL L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.60e-01 -0.00754 0.149 0.895 CD4_CTL L2
ENSG00000162607 USP1 554265 sc-eQTL 2.84e-02 0.309 0.14 0.895 CD4_CTL L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 4.62e-01 -0.104 0.141 0.895 CD4_CTL L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.43e-01 -0.0887 0.115 0.891 CD4_Naive L2
ENSG00000088035 ALG6 -377013 sc-eQTL 4.40e-01 -0.097 0.125 0.891 CD4_Naive L2
ENSG00000116641 DOCK7 302176 sc-eQTL 1.05e-01 -0.2 0.123 0.891 CD4_Naive L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.89e-01 -0.00155 0.109 0.891 CD4_Naive L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 8.90e-01 0.0184 0.133 0.891 CD4_Naive L2
ENSG00000162607 USP1 554265 sc-eQTL 3.51e-02 -0.214 0.101 0.891 CD4_Naive L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 9.19e-03 -0.343 0.13 0.891 CD4_Naive L2
ENSG00000079739 PGM1 -602849 sc-eQTL 7.19e-01 0.0435 0.121 0.891 CD4_TCM L2
ENSG00000088035 ALG6 -377013 sc-eQTL 8.25e-01 -0.0311 0.14 0.891 CD4_TCM L2
ENSG00000116641 DOCK7 302176 sc-eQTL 2.44e-01 0.145 0.124 0.891 CD4_TCM L2
ENSG00000125703 ATG4C 206430 sc-eQTL 7.03e-01 -0.0462 0.121 0.891 CD4_TCM L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 2.39e-01 0.168 0.142 0.891 CD4_TCM L2
ENSG00000162607 USP1 554265 sc-eQTL 1.75e-01 -0.158 0.116 0.891 CD4_TCM L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 1.44e-01 -0.202 0.137 0.891 CD4_TCM L2
ENSG00000079739 PGM1 -602849 sc-eQTL 2.17e-01 0.174 0.141 0.891 CD4_TEM L2
ENSG00000088035 ALG6 -377013 sc-eQTL 3.04e-01 0.146 0.142 0.891 CD4_TEM L2
ENSG00000116641 DOCK7 302176 sc-eQTL 4.71e-01 -0.0999 0.138 0.891 CD4_TEM L2
ENSG00000125703 ATG4C 206430 sc-eQTL 4.62e-01 0.0989 0.134 0.891 CD4_TEM L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.67e-01 0.0795 0.139 0.891 CD4_TEM L2
ENSG00000162607 USP1 554265 sc-eQTL 1.27e-01 -0.2 0.131 0.891 CD4_TEM L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 3.61e-01 -0.131 0.144 0.891 CD4_TEM L2
ENSG00000079739 PGM1 -602849 sc-eQTL 1.66e-01 -0.182 0.131 0.891 CD8_CTL L2
ENSG00000088035 ALG6 -377013 sc-eQTL 6.08e-01 0.0717 0.14 0.891 CD8_CTL L2
ENSG00000116641 DOCK7 302176 sc-eQTL 6.99e-01 0.0512 0.132 0.891 CD8_CTL L2
ENSG00000125703 ATG4C 206430 sc-eQTL 3.86e-01 -0.122 0.141 0.891 CD8_CTL L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.82e-01 -0.0808 0.147 0.891 CD8_CTL L2
ENSG00000162607 USP1 554265 sc-eQTL 6.47e-01 0.0603 0.131 0.891 CD8_CTL L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 1.96e-01 0.194 0.15 0.891 CD8_CTL L2
ENSG00000079739 PGM1 -602849 sc-eQTL 3.03e-01 0.135 0.131 0.891 CD8_Naive L2
ENSG00000088035 ALG6 -377013 sc-eQTL 9.20e-01 0.0136 0.136 0.891 CD8_Naive L2
ENSG00000116641 DOCK7 302176 sc-eQTL 2.38e-01 -0.166 0.14 0.891 CD8_Naive L2
ENSG00000125703 ATG4C 206430 sc-eQTL 1.66e-01 -0.187 0.134 0.891 CD8_Naive L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.15e-01 0.0686 0.136 0.891 CD8_Naive L2
ENSG00000162607 USP1 554265 sc-eQTL 7.27e-01 -0.0403 0.115 0.891 CD8_Naive L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 3.24e-01 -0.127 0.128 0.891 CD8_Naive L2
ENSG00000079739 PGM1 -602849 sc-eQTL 7.76e-01 -0.0415 0.145 0.884 CD8_TCM L2
ENSG00000088035 ALG6 -377013 sc-eQTL 2.98e-01 0.153 0.147 0.884 CD8_TCM L2
ENSG00000116641 DOCK7 302176 sc-eQTL 5.34e-01 -0.0894 0.144 0.884 CD8_TCM L2
ENSG00000125703 ATG4C 206430 sc-eQTL 6.11e-01 0.0748 0.147 0.884 CD8_TCM L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 2.21e-01 -0.175 0.142 0.884 CD8_TCM L2
ENSG00000162607 USP1 554265 sc-eQTL 2.63e-01 -0.154 0.137 0.884 CD8_TCM L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 7.52e-01 -0.046 0.145 0.884 CD8_TCM L2
ENSG00000079739 PGM1 -602849 sc-eQTL 9.17e-03 -0.382 0.145 0.89 CD8_TEM L2
ENSG00000088035 ALG6 -377013 sc-eQTL 7.12e-01 0.0547 0.148 0.89 CD8_TEM L2
ENSG00000116641 DOCK7 302176 sc-eQTL 3.40e-01 0.137 0.143 0.89 CD8_TEM L2
ENSG00000125703 ATG4C 206430 sc-eQTL 4.52e-01 0.104 0.138 0.89 CD8_TEM L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 4.19e-01 -0.121 0.149 0.89 CD8_TEM L2
ENSG00000162607 USP1 554265 sc-eQTL 6.15e-01 0.0718 0.142 0.89 CD8_TEM L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 4.96e-01 -0.0987 0.145 0.89 CD8_TEM L2
ENSG00000079739 PGM1 -602849 sc-eQTL 7.93e-01 0.0368 0.14 0.892 MAIT L2
ENSG00000088035 ALG6 -377013 sc-eQTL 9.65e-01 -0.00603 0.138 0.892 MAIT L2
ENSG00000116641 DOCK7 302176 sc-eQTL 4.98e-01 -0.0899 0.132 0.892 MAIT L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.13e-01 -0.0153 0.14 0.892 MAIT L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.53e-01 -0.063 0.14 0.892 MAIT L2
ENSG00000162607 USP1 554265 sc-eQTL 4.19e-01 0.112 0.139 0.892 MAIT L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 4.88e-01 0.1 0.144 0.892 MAIT L2
ENSG00000079739 PGM1 -602849 sc-eQTL 6.16e-01 0.0703 0.14 0.893 NK_CD56bright L2
ENSG00000088035 ALG6 -377013 sc-eQTL 5.81e-01 -0.0793 0.143 0.893 NK_CD56bright L2
ENSG00000116641 DOCK7 302176 sc-eQTL 1.85e-01 0.165 0.124 0.893 NK_CD56bright L2
ENSG00000125703 ATG4C 206430 sc-eQTL 1.58e-01 -0.196 0.138 0.893 NK_CD56bright L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 1.73e-01 0.197 0.144 0.893 NK_CD56bright L2
ENSG00000162607 USP1 554265 sc-eQTL 8.34e-01 -0.0313 0.149 0.893 NK_CD56bright L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 4.39e-01 0.111 0.142 0.893 NK_CD56bright L2
ENSG00000079739 PGM1 -602849 sc-eQTL 7.72e-01 -0.0319 0.11 0.892 NK_CD56dim L2
ENSG00000088035 ALG6 -377013 sc-eQTL 1.84e-01 -0.185 0.139 0.892 NK_CD56dim L2
ENSG00000116641 DOCK7 302176 sc-eQTL 1.66e-01 0.168 0.121 0.892 NK_CD56dim L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.34e-01 -0.0102 0.123 0.892 NK_CD56dim L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.55e-01 -0.00792 0.14 0.892 NK_CD56dim L2
ENSG00000162607 USP1 554265 sc-eQTL 8.19e-02 -0.236 0.135 0.892 NK_CD56dim L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 2.91e-01 -0.16 0.151 0.892 NK_CD56dim L2
ENSG00000079739 PGM1 -602849 sc-eQTL 8.35e-01 -0.0308 0.148 0.893 NK_HLA L2
ENSG00000088035 ALG6 -377013 sc-eQTL 1.86e-01 0.203 0.153 0.893 NK_HLA L2
ENSG00000116641 DOCK7 302176 sc-eQTL 7.73e-01 -0.0339 0.117 0.893 NK_HLA L2
ENSG00000125703 ATG4C 206430 sc-eQTL 4.67e-01 -0.0992 0.136 0.893 NK_HLA L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 8.13e-01 0.0339 0.143 0.893 NK_HLA L2
ENSG00000162607 USP1 554265 sc-eQTL 3.81e-01 0.131 0.15 0.893 NK_HLA L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 7.09e-01 -0.051 0.136 0.893 NK_HLA L2
ENSG00000079739 PGM1 -602849 sc-eQTL 6.11e-01 -0.0616 0.121 0.892 NK_cytokine L2
ENSG00000088035 ALG6 -377013 sc-eQTL 5.79e-01 0.0759 0.136 0.892 NK_cytokine L2
ENSG00000116641 DOCK7 302176 sc-eQTL 6.98e-01 0.0492 0.126 0.892 NK_cytokine L2
ENSG00000125703 ATG4C 206430 sc-eQTL 8.11e-01 0.031 0.129 0.892 NK_cytokine L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.99e-01 0.0706 0.134 0.892 NK_cytokine L2
ENSG00000162607 USP1 554265 sc-eQTL 8.31e-01 -0.0301 0.141 0.892 NK_cytokine L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 8.93e-01 -0.0192 0.143 0.892 NK_cytokine L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.77e-01 -0.122 0.17 0.893 PB L2
ENSG00000088035 ALG6 -377013 sc-eQTL 5.79e-01 0.0996 0.179 0.893 PB L2
ENSG00000116641 DOCK7 302176 sc-eQTL 9.70e-01 0.00723 0.192 0.893 PB L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.58e-01 0.00881 0.167 0.893 PB L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 3.19e-01 -0.166 0.166 0.893 PB L2
ENSG00000162607 USP1 554265 sc-eQTL 2.85e-01 -0.178 0.165 0.893 PB L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 9.02e-01 -0.0225 0.183 0.893 PB L2
ENSG00000079739 PGM1 -602849 sc-eQTL 2.32e-01 -0.154 0.128 0.889 Pro_T L2
ENSG00000088035 ALG6 -377013 sc-eQTL 7.10e-01 0.0487 0.131 0.889 Pro_T L2
ENSG00000116641 DOCK7 302176 sc-eQTL 6.33e-01 -0.0627 0.131 0.889 Pro_T L2
ENSG00000125703 ATG4C 206430 sc-eQTL 4.16e-01 0.0934 0.115 0.889 Pro_T L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.19e-01 -0.0117 0.115 0.889 Pro_T L2
ENSG00000162607 USP1 554265 sc-eQTL 2.23e-01 -0.0964 0.0789 0.889 Pro_T L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 7.55e-01 0.0417 0.134 0.889 Pro_T L2
ENSG00000079739 PGM1 -602849 sc-eQTL 9.41e-01 -0.0102 0.137 0.891 Treg L2
ENSG00000088035 ALG6 -377013 sc-eQTL 2.87e-01 0.156 0.146 0.891 Treg L2
ENSG00000116641 DOCK7 302176 sc-eQTL 4.13e-01 0.11 0.134 0.891 Treg L2
ENSG00000125703 ATG4C 206430 sc-eQTL 1.36e-01 -0.205 0.137 0.891 Treg L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 3.66e-01 0.13 0.144 0.891 Treg L2
ENSG00000162607 USP1 554265 sc-eQTL 8.83e-01 -0.0205 0.139 0.891 Treg L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 9.86e-03 0.353 0.135 0.891 Treg L2
ENSG00000079739 PGM1 -602849 sc-eQTL 9.94e-01 0.00106 0.136 0.893 cDC L2
ENSG00000088035 ALG6 -377013 sc-eQTL 6.45e-01 0.0639 0.138 0.893 cDC L2
ENSG00000116641 DOCK7 302176 sc-eQTL 4.26e-01 -0.108 0.136 0.893 cDC L2
ENSG00000125703 ATG4C 206430 sc-eQTL 8.21e-01 0.0268 0.118 0.893 cDC L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 2.44e-01 0.174 0.149 0.893 cDC L2
ENSG00000162607 USP1 554265 sc-eQTL 5.04e-01 0.0889 0.133 0.893 cDC L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 7.51e-01 0.0382 0.12 0.893 cDC L2
ENSG00000079739 PGM1 -602849 sc-eQTL 3.95e-02 -0.265 0.128 0.891 cMono_IL1B L2
ENSG00000088035 ALG6 -377013 sc-eQTL 4.11e-01 0.107 0.129 0.891 cMono_IL1B L2
ENSG00000116641 DOCK7 302176 sc-eQTL 5.86e-01 0.0745 0.136 0.891 cMono_IL1B L2
ENSG00000125703 ATG4C 206430 sc-eQTL 5.05e-01 0.0641 0.0959 0.891 cMono_IL1B L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.02e-01 0.0914 0.136 0.891 cMono_IL1B L2
ENSG00000162607 USP1 554265 sc-eQTL 5.82e-01 -0.066 0.12 0.891 cMono_IL1B L2
ENSG00000240563 L1TD1 795713 sc-eQTL 4.80e-01 0.0851 0.12 0.891 cMono_IL1B L2
ENSG00000079739 PGM1 -602849 sc-eQTL 8.09e-01 0.0347 0.143 0.891 cMono_S100A L2
ENSG00000088035 ALG6 -377013 sc-eQTL 4.83e-02 -0.286 0.144 0.891 cMono_S100A L2
ENSG00000116641 DOCK7 302176 sc-eQTL 4.77e-01 -0.0959 0.135 0.891 cMono_S100A L2
ENSG00000125703 ATG4C 206430 sc-eQTL 7.41e-01 0.0386 0.117 0.891 cMono_S100A L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 7.82e-01 -0.0364 0.132 0.891 cMono_S100A L2
ENSG00000162607 USP1 554265 sc-eQTL 4.82e-01 -0.0953 0.135 0.891 cMono_S100A L2
ENSG00000240563 L1TD1 795713 sc-eQTL 7.30e-01 0.0389 0.113 0.891 cMono_S100A L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.41e-01 -0.126 0.163 0.9 gdT L2
ENSG00000088035 ALG6 -377013 sc-eQTL 3.75e-02 0.359 0.171 0.9 gdT L2
ENSG00000116641 DOCK7 302176 sc-eQTL 5.05e-01 -0.114 0.17 0.9 gdT L2
ENSG00000125703 ATG4C 206430 sc-eQTL 2.48e-01 0.188 0.162 0.9 gdT L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.96e-01 -0.000908 0.173 0.9 gdT L2
ENSG00000162607 USP1 554265 sc-eQTL 3.57e-01 0.151 0.163 0.9 gdT L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 5.80e-01 -0.0942 0.17 0.9 gdT L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.72e-01 0.102 0.142 0.891 intMono L2
ENSG00000088035 ALG6 -377013 sc-eQTL 1.86e-01 0.175 0.132 0.891 intMono L2
ENSG00000116641 DOCK7 302176 sc-eQTL 7.57e-01 0.0419 0.135 0.891 intMono L2
ENSG00000125703 ATG4C 206430 sc-eQTL 4.43e-01 -0.0991 0.129 0.891 intMono L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.50e-01 0.0645 0.142 0.891 intMono L2
ENSG00000162607 USP1 554265 sc-eQTL 6.35e-01 0.0686 0.144 0.891 intMono L2
ENSG00000240563 L1TD1 795713 sc-eQTL 7.02e-01 0.0407 0.106 0.891 intMono L2
ENSG00000079739 PGM1 -602849 sc-eQTL 4.56e-01 0.0981 0.131 0.896 ncMono L2
ENSG00000088035 ALG6 -377013 sc-eQTL 2.53e-01 0.165 0.144 0.896 ncMono L2
ENSG00000116641 DOCK7 302176 sc-eQTL 5.63e-01 0.0823 0.142 0.896 ncMono L2
ENSG00000125703 ATG4C 206430 sc-eQTL 9.26e-01 0.0124 0.133 0.896 ncMono L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.17e-01 -0.0902 0.139 0.896 ncMono L2
ENSG00000162607 USP1 554265 sc-eQTL 1.10e-01 0.227 0.141 0.896 ncMono L2
ENSG00000240563 L1TD1 795713 sc-eQTL 4.15e-01 -0.0822 0.101 0.896 ncMono L2
ENSG00000079739 PGM1 -602849 sc-eQTL 1.30e-01 0.235 0.155 0.895 pDC L2
ENSG00000088035 ALG6 -377013 sc-eQTL 9.24e-02 -0.254 0.15 0.895 pDC L2
ENSG00000116641 DOCK7 302176 sc-eQTL 6.09e-01 0.0793 0.155 0.895 pDC L2
ENSG00000125703 ATG4C 206430 sc-eQTL 7.50e-01 0.0443 0.139 0.895 pDC L2
ENSG00000142856 ITGB3BP -603159 sc-eQTL 1.16e-01 -0.245 0.155 0.895 pDC L2
ENSG00000162607 USP1 554265 sc-eQTL 8.89e-01 0.0222 0.159 0.895 pDC L2
ENSG00000203965 EFCAB7 -532810 sc-eQTL 1.57e-01 0.195 0.137 0.895 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -602849 sc-eQTL 6.48e-01 -0.0607 0.133 0.891 B_Memory LOneK1K
ENSG00000088035 ALG6 -377013 sc-eQTL 4.39e-01 0.114 0.147 0.891 B_Memory LOneK1K
ENSG00000116641 DOCK7 302176 sc-eQTL 8.14e-02 0.221 0.126 0.891 B_Memory LOneK1K
ENSG00000125703 ATG4C 206430 sc-eQTL 8.96e-01 -0.0135 0.103 0.891 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -603159 sc-eQTL 5.67e-02 0.257 0.134 0.891 B_Memory LOneK1K
ENSG00000162607 USP1 554265 sc-eQTL 2.42e-01 0.154 0.131 0.891 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -532810 sc-eQTL 5.66e-01 -0.081 0.141 0.891 B_Memory LOneK1K
ENSG00000079739 PGM1 -602849 sc-eQTL 6.46e-01 0.0636 0.138 0.891 B_Naive LOneK1K
ENSG00000088035 ALG6 -377013 sc-eQTL 7.78e-02 -0.25 0.141 0.891 B_Naive LOneK1K
ENSG00000116641 DOCK7 302176 sc-eQTL 7.91e-01 0.0352 0.133 0.891 B_Naive LOneK1K
ENSG00000125703 ATG4C 206430 sc-eQTL 2.33e-01 0.121 0.101 0.891 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.95e-01 0.0562 0.143 0.891 B_Naive LOneK1K
ENSG00000162607 USP1 554265 sc-eQTL 1.96e-01 -0.159 0.123 0.891 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -532810 sc-eQTL 4.52e-01 0.108 0.144 0.891 B_Naive LOneK1K
ENSG00000079739 PGM1 -602849 sc-eQTL 2.02e-01 -0.168 0.132 0.891 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -377013 sc-eQTL 6.83e-01 -0.0524 0.128 0.891 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 302176 sc-eQTL 9.08e-01 -0.0148 0.129 0.891 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 206430 sc-eQTL 6.31e-01 0.0429 0.0891 0.891 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.43e-01 0.0613 0.132 0.891 CD14_Mono LOneK1K
ENSG00000162607 USP1 554265 sc-eQTL 3.62e-01 -0.103 0.112 0.891 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 795713 sc-eQTL 6.50e-01 0.0554 0.122 0.891 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -602849 sc-eQTL 7.72e-02 0.22 0.124 0.89 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -377013 sc-eQTL 2.55e-01 0.162 0.142 0.89 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 302176 sc-eQTL 3.42e-01 0.134 0.14 0.89 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 206430 sc-eQTL 4.75e-01 -0.0856 0.12 0.89 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -603159 sc-eQTL 6.99e-01 -0.0539 0.139 0.89 CD16_Mono LOneK1K
ENSG00000162607 USP1 554265 sc-eQTL 9.54e-02 0.217 0.13 0.89 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 795713 sc-eQTL 7.48e-01 -0.0286 0.0891 0.89 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -602849 sc-eQTL 3.91e-01 -0.0923 0.107 0.892 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -377013 sc-eQTL 9.73e-01 -0.00431 0.129 0.892 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 302176 sc-eQTL 4.44e-01 0.0886 0.116 0.892 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 206430 sc-eQTL 9.11e-01 0.013 0.115 0.892 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -603159 sc-eQTL 9.81e-01 -0.00327 0.137 0.892 NK_CD56dim LOneK1K
ENSG00000162607 USP1 554265 sc-eQTL 3.98e-01 -0.105 0.124 0.892 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -532810 sc-eQTL 3.24e-01 -0.149 0.151 0.892 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116652 DLEU2L -556520 eQTL 0.0454 0.077 0.0384 0.00113 0.0 0.122

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 DLEU2L -556520 3.77e-07 1.67e-07 6.55e-08 2.31e-07 1.01e-07 8.4e-08 2.63e-07 5.82e-08 1.86e-07 1.05e-07 1.86e-07 1.48e-07 2.74e-07 8.44e-08 6.27e-08 9.11e-08 5.42e-08 2.04e-07 7.29e-08 6.03e-08 1.26e-07 1.7e-07 1.75e-07 4.27e-08 2.36e-07 1.39e-07 1.23e-07 1.17e-07 1.37e-07 1.58e-07 1.26e-07 4.85e-08 3.74e-08 9.52e-08 5.16e-08 3.18e-08 3.7e-08 7.51e-08 6.45e-08 6.07e-08 5.1e-08 1.63e-07 3.08e-08 1.1e-08 3.34e-08 8.31e-09 7.61e-08 2.2e-09 4.83e-08