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Genes within 1Mb (chr1:62987458:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -605953 sc-eQTL 9.40e-01 0.0057 0.0757 0.487 B L1
ENSG00000088035 ALG6 -380117 sc-eQTL 1.84e-01 -0.104 0.0781 0.487 B L1
ENSG00000116641 DOCK7 299072 sc-eQTL 1.85e-01 0.104 0.0781 0.487 B L1
ENSG00000125703 ATG4C 203326 sc-eQTL 9.52e-01 0.00332 0.0545 0.487 B L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.67e-01 -0.0146 0.0867 0.487 B L1
ENSG00000162607 USP1 551161 sc-eQTL 5.86e-02 -0.142 0.0746 0.487 B L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.59e-01 0.00459 0.0889 0.487 B L1
ENSG00000079739 PGM1 -605953 sc-eQTL 1.20e-01 0.103 0.0657 0.487 CD4T L1
ENSG00000088035 ALG6 -380117 sc-eQTL 8.05e-01 0.0181 0.073 0.487 CD4T L1
ENSG00000116641 DOCK7 299072 sc-eQTL 5.95e-01 -0.0393 0.0738 0.487 CD4T L1
ENSG00000125703 ATG4C 203326 sc-eQTL 8.97e-01 -0.0077 0.0597 0.487 CD4T L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.05e-01 0.0209 0.0847 0.487 CD4T L1
ENSG00000162607 USP1 551161 sc-eQTL 6.38e-01 0.0273 0.0579 0.487 CD4T L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 3.12e-01 0.0769 0.0758 0.487 CD4T L1
ENSG00000079739 PGM1 -605953 sc-eQTL 4.82e-01 -0.0518 0.0734 0.487 CD8T L1
ENSG00000088035 ALG6 -380117 sc-eQTL 9.87e-01 -0.00131 0.0811 0.487 CD8T L1
ENSG00000116641 DOCK7 299072 sc-eQTL 1.80e-01 0.11 0.0818 0.487 CD8T L1
ENSG00000125703 ATG4C 203326 sc-eQTL 4.46e-01 0.0595 0.0779 0.487 CD8T L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 2.33e-01 0.104 0.0869 0.487 CD8T L1
ENSG00000162607 USP1 551161 sc-eQTL 6.68e-02 0.124 0.0674 0.487 CD8T L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 6.91e-02 -0.158 0.0863 0.487 CD8T L1
ENSG00000079739 PGM1 -605953 sc-eQTL 4.40e-01 0.0617 0.0797 0.486 DC L1
ENSG00000088035 ALG6 -380117 sc-eQTL 8.18e-01 -0.019 0.0824 0.486 DC L1
ENSG00000116641 DOCK7 299072 sc-eQTL 5.04e-03 0.235 0.0828 0.486 DC L1
ENSG00000125703 ATG4C 203326 sc-eQTL 1.66e-01 0.0914 0.0657 0.486 DC L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.58e-01 0.13 0.0919 0.486 DC L1
ENSG00000162607 USP1 551161 sc-eQTL 8.83e-01 0.0119 0.0806 0.486 DC L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 6.02e-02 0.151 0.0797 0.486 DC L1
ENSG00000079739 PGM1 -605953 sc-eQTL 6.10e-01 0.0404 0.0792 0.487 Mono L1
ENSG00000088035 ALG6 -380117 sc-eQTL 4.47e-01 -0.0628 0.0826 0.487 Mono L1
ENSG00000116641 DOCK7 299072 sc-eQTL 2.58e-01 0.0904 0.0797 0.487 Mono L1
ENSG00000125703 ATG4C 203326 sc-eQTL 7.88e-01 -0.0145 0.054 0.487 Mono L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 7.27e-01 -0.0299 0.0854 0.487 Mono L1
ENSG00000162607 USP1 551161 sc-eQTL 3.90e-01 -0.0603 0.07 0.487 Mono L1
ENSG00000240563 L1TD1 792609 sc-eQTL 6.24e-01 -0.0321 0.0654 0.487 Mono L1
ENSG00000079739 PGM1 -605953 sc-eQTL 4.02e-01 -0.0566 0.0674 0.487 NK L1
ENSG00000088035 ALG6 -380117 sc-eQTL 1.46e-01 0.115 0.0787 0.487 NK L1
ENSG00000116641 DOCK7 299072 sc-eQTL 8.56e-01 0.0118 0.0652 0.487 NK L1
ENSG00000125703 ATG4C 203326 sc-eQTL 3.19e-01 0.0698 0.0698 0.487 NK L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 7.85e-01 0.0237 0.087 0.487 NK L1
ENSG00000162607 USP1 551161 sc-eQTL 8.47e-02 -0.134 0.0772 0.487 NK L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.63e-01 0.00439 0.0945 0.487 NK L1
ENSG00000079739 PGM1 -605953 sc-eQTL 1.35e-01 -0.112 0.0747 0.487 Other_T L1
ENSG00000088035 ALG6 -380117 sc-eQTL 5.81e-01 0.0417 0.0754 0.487 Other_T L1
ENSG00000116641 DOCK7 299072 sc-eQTL 9.69e-01 0.00304 0.0771 0.487 Other_T L1
ENSG00000125703 ATG4C 203326 sc-eQTL 2.23e-01 0.0813 0.0665 0.487 Other_T L1
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.27e-01 0.0901 0.0588 0.487 Other_T L1
ENSG00000162607 USP1 551161 sc-eQTL 6.12e-01 -0.026 0.0513 0.487 Other_T L1
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.46e-02 -0.183 0.0904 0.487 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -605953 sc-eQTL 4.99e-01 0.0717 0.106 0.472 B_Activated L2
ENSG00000088035 ALG6 -380117 sc-eQTL 2.98e-01 -0.106 0.101 0.472 B_Activated L2
ENSG00000116641 DOCK7 299072 sc-eQTL 5.52e-01 0.0562 0.0944 0.472 B_Activated L2
ENSG00000125703 ATG4C 203326 sc-eQTL 4.08e-01 0.0823 0.0991 0.472 B_Activated L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 3.04e-01 0.0997 0.0968 0.472 B_Activated L2
ENSG00000162607 USP1 551161 sc-eQTL 6.72e-01 0.0446 0.105 0.472 B_Activated L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.41e-01 -0.0709 0.0917 0.472 B_Activated L2
ENSG00000079739 PGM1 -605953 sc-eQTL 2.78e-01 0.0988 0.0908 0.487 B_Intermediate L2
ENSG00000088035 ALG6 -380117 sc-eQTL 6.83e-01 0.0378 0.0924 0.487 B_Intermediate L2
ENSG00000116641 DOCK7 299072 sc-eQTL 5.98e-01 0.0466 0.0883 0.487 B_Intermediate L2
ENSG00000125703 ATG4C 203326 sc-eQTL 7.62e-01 0.0227 0.0748 0.487 B_Intermediate L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.56e-01 -0.126 0.0886 0.487 B_Intermediate L2
ENSG00000162607 USP1 551161 sc-eQTL 8.60e-01 -0.0157 0.0889 0.487 B_Intermediate L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.64e-01 0.0151 0.0882 0.487 B_Intermediate L2
ENSG00000079739 PGM1 -605953 sc-eQTL 8.06e-01 -0.0219 0.0889 0.489 B_Memory L2
ENSG00000088035 ALG6 -380117 sc-eQTL 5.20e-01 -0.0581 0.0903 0.489 B_Memory L2
ENSG00000116641 DOCK7 299072 sc-eQTL 4.73e-01 -0.0608 0.0846 0.489 B_Memory L2
ENSG00000125703 ATG4C 203326 sc-eQTL 6.24e-01 0.0395 0.0805 0.489 B_Memory L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 3.38e-01 -0.0883 0.092 0.489 B_Memory L2
ENSG00000162607 USP1 551161 sc-eQTL 7.14e-02 -0.167 0.0922 0.489 B_Memory L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.28e-02 0.158 0.0908 0.489 B_Memory L2
ENSG00000079739 PGM1 -605953 sc-eQTL 8.12e-01 -0.0217 0.091 0.487 B_Naive1 L2
ENSG00000088035 ALG6 -380117 sc-eQTL 2.17e-01 -0.113 0.091 0.487 B_Naive1 L2
ENSG00000116641 DOCK7 299072 sc-eQTL 3.10e-01 0.0888 0.0873 0.487 B_Naive1 L2
ENSG00000125703 ATG4C 203326 sc-eQTL 5.82e-01 -0.0371 0.0674 0.487 B_Naive1 L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 9.61e-01 0.00434 0.0895 0.487 B_Naive1 L2
ENSG00000162607 USP1 551161 sc-eQTL 3.79e-01 -0.0692 0.0785 0.487 B_Naive1 L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.82e-01 -0.00214 0.0954 0.487 B_Naive1 L2
ENSG00000079739 PGM1 -605953 sc-eQTL 4.01e-01 0.0751 0.0894 0.489 B_Naive2 L2
ENSG00000088035 ALG6 -380117 sc-eQTL 1.58e-01 -0.131 0.0929 0.489 B_Naive2 L2
ENSG00000116641 DOCK7 299072 sc-eQTL 9.43e-01 -0.00646 0.0897 0.489 B_Naive2 L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.91e-01 0.0119 0.0864 0.489 B_Naive2 L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 7.99e-01 0.0239 0.0936 0.489 B_Naive2 L2
ENSG00000162607 USP1 551161 sc-eQTL 4.85e-01 0.0623 0.0891 0.489 B_Naive2 L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 3.14e-01 -0.0939 0.093 0.489 B_Naive2 L2
ENSG00000079739 PGM1 -605953 sc-eQTL 2.61e-01 -0.103 0.0918 0.498 CD4_CTL L2
ENSG00000088035 ALG6 -380117 sc-eQTL 1.03e-01 0.158 0.0967 0.498 CD4_CTL L2
ENSG00000116641 DOCK7 299072 sc-eQTL 8.26e-01 -0.0187 0.0851 0.498 CD4_CTL L2
ENSG00000125703 ATG4C 203326 sc-eQTL 9.41e-01 0.00657 0.0881 0.498 CD4_CTL L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.43e-01 0.138 0.0937 0.498 CD4_CTL L2
ENSG00000162607 USP1 551161 sc-eQTL 2.45e-01 0.104 0.0893 0.498 CD4_CTL L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.36e-01 0.0698 0.0894 0.498 CD4_CTL L2
ENSG00000079739 PGM1 -605953 sc-eQTL 1.06e-01 0.12 0.0738 0.487 CD4_Naive L2
ENSG00000088035 ALG6 -380117 sc-eQTL 9.03e-01 -0.00988 0.0807 0.487 CD4_Naive L2
ENSG00000116641 DOCK7 299072 sc-eQTL 5.62e-01 -0.046 0.0793 0.487 CD4_Naive L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.48e-01 -0.0135 0.0701 0.487 CD4_Naive L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 9.50e-01 -0.00536 0.0857 0.487 CD4_Naive L2
ENSG00000162607 USP1 551161 sc-eQTL 5.79e-01 0.0364 0.0654 0.487 CD4_Naive L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 2.24e-01 0.103 0.0848 0.487 CD4_Naive L2
ENSG00000079739 PGM1 -605953 sc-eQTL 3.32e-01 0.0748 0.077 0.487 CD4_TCM L2
ENSG00000088035 ALG6 -380117 sc-eQTL 4.65e-01 -0.0654 0.0895 0.487 CD4_TCM L2
ENSG00000116641 DOCK7 299072 sc-eQTL 7.23e-01 -0.0282 0.0794 0.487 CD4_TCM L2
ENSG00000125703 ATG4C 203326 sc-eQTL 3.19e-01 0.077 0.0771 0.487 CD4_TCM L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.48e-01 -0.0175 0.0911 0.487 CD4_TCM L2
ENSG00000162607 USP1 551161 sc-eQTL 5.16e-01 0.0485 0.0746 0.487 CD4_TCM L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.15e-01 0.0207 0.0882 0.487 CD4_TCM L2
ENSG00000079739 PGM1 -605953 sc-eQTL 7.36e-01 0.0305 0.0905 0.487 CD4_TEM L2
ENSG00000088035 ALG6 -380117 sc-eQTL 9.12e-01 0.01 0.091 0.487 CD4_TEM L2
ENSG00000116641 DOCK7 299072 sc-eQTL 4.67e-01 -0.0645 0.0886 0.487 CD4_TEM L2
ENSG00000125703 ATG4C 203326 sc-eQTL 4.50e-01 0.0651 0.086 0.487 CD4_TEM L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 7.11e-01 0.0329 0.0889 0.487 CD4_TEM L2
ENSG00000162607 USP1 551161 sc-eQTL 3.79e-01 0.0741 0.0841 0.487 CD4_TEM L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.03e-01 0.023 0.0921 0.487 CD4_TEM L2
ENSG00000079739 PGM1 -605953 sc-eQTL 5.77e-01 -0.0461 0.0826 0.487 CD8_CTL L2
ENSG00000088035 ALG6 -380117 sc-eQTL 1.72e-01 0.12 0.0876 0.487 CD8_CTL L2
ENSG00000116641 DOCK7 299072 sc-eQTL 4.47e-01 0.0634 0.0833 0.487 CD8_CTL L2
ENSG00000125703 ATG4C 203326 sc-eQTL 9.74e-01 -0.00293 0.0888 0.487 CD8_CTL L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 2.33e-01 0.11 0.092 0.487 CD8_CTL L2
ENSG00000162607 USP1 551161 sc-eQTL 1.61e-01 0.116 0.0823 0.487 CD8_CTL L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.57e-02 -0.188 0.0937 0.487 CD8_CTL L2
ENSG00000079739 PGM1 -605953 sc-eQTL 4.74e-01 0.0601 0.0838 0.487 CD8_Naive L2
ENSG00000088035 ALG6 -380117 sc-eQTL 3.36e-01 -0.0836 0.0867 0.487 CD8_Naive L2
ENSG00000116641 DOCK7 299072 sc-eQTL 6.14e-02 0.168 0.0891 0.487 CD8_Naive L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.60e-01 -0.0152 0.0862 0.487 CD8_Naive L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 3.19e-01 0.0871 0.0871 0.487 CD8_Naive L2
ENSG00000162607 USP1 551161 sc-eQTL 2.58e-01 0.0835 0.0736 0.487 CD8_Naive L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.06e-01 -0.0685 0.0822 0.487 CD8_Naive L2
ENSG00000079739 PGM1 -605953 sc-eQTL 8.79e-01 0.0141 0.0928 0.502 CD8_TCM L2
ENSG00000088035 ALG6 -380117 sc-eQTL 8.93e-01 0.0126 0.0939 0.502 CD8_TCM L2
ENSG00000116641 DOCK7 299072 sc-eQTL 8.16e-01 0.0214 0.0916 0.502 CD8_TCM L2
ENSG00000125703 ATG4C 203326 sc-eQTL 9.61e-01 0.0046 0.0937 0.502 CD8_TCM L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 5.64e-01 -0.0526 0.091 0.502 CD8_TCM L2
ENSG00000162607 USP1 551161 sc-eQTL 9.57e-01 -0.00478 0.0877 0.502 CD8_TCM L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 6.18e-01 -0.0463 0.0928 0.502 CD8_TCM L2
ENSG00000079739 PGM1 -605953 sc-eQTL 6.56e-01 0.0418 0.0938 0.491 CD8_TEM L2
ENSG00000088035 ALG6 -380117 sc-eQTL 9.91e-01 0.00107 0.0942 0.491 CD8_TEM L2
ENSG00000116641 DOCK7 299072 sc-eQTL 3.62e-01 0.0831 0.0911 0.491 CD8_TEM L2
ENSG00000125703 ATG4C 203326 sc-eQTL 4.46e-01 0.0669 0.0876 0.491 CD8_TEM L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.39e-01 -0.0736 0.0948 0.491 CD8_TEM L2
ENSG00000162607 USP1 551161 sc-eQTL 1.22e-01 0.14 0.0901 0.491 CD8_TEM L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.43e-01 -0.0707 0.092 0.491 CD8_TEM L2
ENSG00000079739 PGM1 -605953 sc-eQTL 7.13e-01 -0.0326 0.0885 0.487 MAIT L2
ENSG00000088035 ALG6 -380117 sc-eQTL 8.19e-02 0.152 0.087 0.487 MAIT L2
ENSG00000116641 DOCK7 299072 sc-eQTL 3.41e-01 0.0799 0.0838 0.487 MAIT L2
ENSG00000125703 ATG4C 203326 sc-eQTL 7.48e-01 0.0285 0.0885 0.487 MAIT L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 7.71e-02 0.156 0.088 0.487 MAIT L2
ENSG00000162607 USP1 551161 sc-eQTL 8.66e-01 -0.0149 0.088 0.487 MAIT L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.30e-01 -0.0197 0.0913 0.487 MAIT L2
ENSG00000079739 PGM1 -605953 sc-eQTL 8.21e-01 -0.0199 0.0879 0.489 NK_CD56bright L2
ENSG00000088035 ALG6 -380117 sc-eQTL 3.82e-01 0.0788 0.0899 0.489 NK_CD56bright L2
ENSG00000116641 DOCK7 299072 sc-eQTL 7.37e-01 -0.0262 0.078 0.489 NK_CD56bright L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.64e-01 -0.0149 0.0872 0.489 NK_CD56bright L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.82e-02 -0.213 0.0896 0.489 NK_CD56bright L2
ENSG00000162607 USP1 551161 sc-eQTL 5.52e-01 -0.0558 0.0936 0.489 NK_CD56bright L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 7.86e-01 -0.0244 0.0896 0.489 NK_CD56bright L2
ENSG00000079739 PGM1 -605953 sc-eQTL 4.00e-01 -0.0587 0.0696 0.487 NK_CD56dim L2
ENSG00000088035 ALG6 -380117 sc-eQTL 5.56e-01 0.0521 0.0884 0.487 NK_CD56dim L2
ENSG00000116641 DOCK7 299072 sc-eQTL 2.34e-01 0.0915 0.0767 0.487 NK_CD56dim L2
ENSG00000125703 ATG4C 203326 sc-eQTL 1.06e-01 0.126 0.0777 0.487 NK_CD56dim L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 3.51e-01 0.083 0.0888 0.487 NK_CD56dim L2
ENSG00000162607 USP1 551161 sc-eQTL 2.20e-01 -0.106 0.0859 0.487 NK_CD56dim L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.95e-01 -0.000637 0.0961 0.487 NK_CD56dim L2
ENSG00000079739 PGM1 -605953 sc-eQTL 7.76e-02 -0.165 0.0932 0.491 NK_HLA L2
ENSG00000088035 ALG6 -380117 sc-eQTL 5.76e-01 0.0545 0.0973 0.491 NK_HLA L2
ENSG00000116641 DOCK7 299072 sc-eQTL 2.49e-01 0.0859 0.0742 0.491 NK_HLA L2
ENSG00000125703 ATG4C 203326 sc-eQTL 2.13e-01 -0.108 0.0863 0.491 NK_HLA L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.09e-01 0.145 0.0904 0.491 NK_HLA L2
ENSG00000162607 USP1 551161 sc-eQTL 1.73e-02 -0.225 0.0938 0.491 NK_HLA L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 1.63e-01 -0.121 0.0862 0.491 NK_HLA L2
ENSG00000079739 PGM1 -605953 sc-eQTL 4.38e-01 -0.0595 0.0765 0.487 NK_cytokine L2
ENSG00000088035 ALG6 -380117 sc-eQTL 5.65e-01 0.0499 0.0866 0.487 NK_cytokine L2
ENSG00000116641 DOCK7 299072 sc-eQTL 3.89e-01 -0.0692 0.0801 0.487 NK_cytokine L2
ENSG00000125703 ATG4C 203326 sc-eQTL 9.40e-01 -0.00621 0.0821 0.487 NK_cytokine L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.53e-01 0.0157 0.085 0.487 NK_cytokine L2
ENSG00000162607 USP1 551161 sc-eQTL 8.46e-01 0.0174 0.0894 0.487 NK_cytokine L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.22e-02 0.157 0.0899 0.487 NK_cytokine L2
ENSG00000079739 PGM1 -605953 sc-eQTL 9.94e-01 0.000886 0.113 0.452 PB L2
ENSG00000088035 ALG6 -380117 sc-eQTL 3.76e-01 0.105 0.118 0.452 PB L2
ENSG00000116641 DOCK7 299072 sc-eQTL 7.38e-01 0.0424 0.126 0.452 PB L2
ENSG00000125703 ATG4C 203326 sc-eQTL 9.74e-01 -0.00361 0.11 0.452 PB L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 6.62e-01 -0.0482 0.11 0.452 PB L2
ENSG00000162607 USP1 551161 sc-eQTL 4.85e-03 -0.304 0.106 0.452 PB L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.94e-01 -0.000904 0.121 0.452 PB L2
ENSG00000079739 PGM1 -605953 sc-eQTL 1.10e-01 -0.133 0.083 0.489 Pro_T L2
ENSG00000088035 ALG6 -380117 sc-eQTL 2.19e-01 0.104 0.0846 0.489 Pro_T L2
ENSG00000116641 DOCK7 299072 sc-eQTL 4.93e-01 0.0585 0.0851 0.489 Pro_T L2
ENSG00000125703 ATG4C 203326 sc-eQTL 6.00e-01 0.0392 0.0746 0.489 Pro_T L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 9.74e-01 0.00242 0.0748 0.489 Pro_T L2
ENSG00000162607 USP1 551161 sc-eQTL 4.17e-01 0.0418 0.0514 0.489 Pro_T L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 1.53e-02 -0.21 0.0857 0.489 Pro_T L2
ENSG00000079739 PGM1 -605953 sc-eQTL 2.37e-01 0.104 0.0877 0.487 Treg L2
ENSG00000088035 ALG6 -380117 sc-eQTL 6.85e-01 -0.0382 0.0941 0.487 Treg L2
ENSG00000116641 DOCK7 299072 sc-eQTL 7.88e-01 -0.0233 0.0864 0.487 Treg L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.88e-01 0.0124 0.0883 0.487 Treg L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.31e-01 -0.0197 0.0923 0.487 Treg L2
ENSG00000162607 USP1 551161 sc-eQTL 9.87e-01 0.00149 0.0893 0.487 Treg L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 8.81e-02 -0.15 0.0877 0.487 Treg L2
ENSG00000079739 PGM1 -605953 sc-eQTL 5.38e-01 0.0537 0.0871 0.48 cDC L2
ENSG00000088035 ALG6 -380117 sc-eQTL 9.32e-01 0.00759 0.0884 0.48 cDC L2
ENSG00000116641 DOCK7 299072 sc-eQTL 3.51e-02 0.182 0.0857 0.48 cDC L2
ENSG00000125703 ATG4C 203326 sc-eQTL 5.49e-01 0.0452 0.0753 0.48 cDC L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 2.83e-01 0.103 0.0952 0.48 cDC L2
ENSG00000162607 USP1 551161 sc-eQTL 9.33e-01 0.00717 0.085 0.48 cDC L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 9.12e-01 -0.00851 0.0767 0.48 cDC L2
ENSG00000079739 PGM1 -605953 sc-eQTL 3.11e-01 0.0834 0.0821 0.487 cMono_IL1B L2
ENSG00000088035 ALG6 -380117 sc-eQTL 2.50e-01 -0.0947 0.0822 0.487 cMono_IL1B L2
ENSG00000116641 DOCK7 299072 sc-eQTL 8.65e-02 0.149 0.0863 0.487 cMono_IL1B L2
ENSG00000125703 ATG4C 203326 sc-eQTL 2.91e-01 -0.0645 0.0609 0.487 cMono_IL1B L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.83e-01 -0.115 0.0862 0.487 cMono_IL1B L2
ENSG00000162607 USP1 551161 sc-eQTL 6.27e-01 -0.0372 0.0763 0.487 cMono_IL1B L2
ENSG00000240563 L1TD1 792609 sc-eQTL 5.76e-01 0.0429 0.0766 0.487 cMono_IL1B L2
ENSG00000079739 PGM1 -605953 sc-eQTL 3.54e-01 0.0862 0.0929 0.487 cMono_S100A L2
ENSG00000088035 ALG6 -380117 sc-eQTL 4.09e-01 -0.0778 0.0941 0.487 cMono_S100A L2
ENSG00000116641 DOCK7 299072 sc-eQTL 2.99e-01 -0.0907 0.0872 0.487 cMono_S100A L2
ENSG00000125703 ATG4C 203326 sc-eQTL 8.06e-01 0.0186 0.0757 0.487 cMono_S100A L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 9.95e-01 -0.000483 0.0854 0.487 cMono_S100A L2
ENSG00000162607 USP1 551161 sc-eQTL 5.84e-01 -0.0482 0.0878 0.487 cMono_S100A L2
ENSG00000240563 L1TD1 792609 sc-eQTL 1.16e-01 -0.115 0.0727 0.487 cMono_S100A L2
ENSG00000079739 PGM1 -605953 sc-eQTL 7.12e-01 0.0371 0.1 0.494 gdT L2
ENSG00000088035 ALG6 -380117 sc-eQTL 2.05e-01 -0.135 0.106 0.494 gdT L2
ENSG00000116641 DOCK7 299072 sc-eQTL 6.96e-01 -0.041 0.105 0.494 gdT L2
ENSG00000125703 ATG4C 203326 sc-eQTL 1.91e-01 0.131 0.0996 0.494 gdT L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 2.59e-01 0.12 0.106 0.494 gdT L2
ENSG00000162607 USP1 551161 sc-eQTL 3.76e-01 -0.0892 0.1 0.494 gdT L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 1.63e-01 -0.146 0.104 0.494 gdT L2
ENSG00000079739 PGM1 -605953 sc-eQTL 5.69e-01 -0.052 0.0912 0.487 intMono L2
ENSG00000088035 ALG6 -380117 sc-eQTL 6.36e-01 -0.0402 0.0849 0.487 intMono L2
ENSG00000116641 DOCK7 299072 sc-eQTL 1.16e-01 0.136 0.0863 0.487 intMono L2
ENSG00000125703 ATG4C 203326 sc-eQTL 5.54e-01 0.0491 0.0828 0.487 intMono L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 8.34e-01 -0.0192 0.0913 0.487 intMono L2
ENSG00000162607 USP1 551161 sc-eQTL 6.40e-01 -0.0435 0.0928 0.487 intMono L2
ENSG00000240563 L1TD1 792609 sc-eQTL 6.04e-01 -0.0355 0.0682 0.487 intMono L2
ENSG00000079739 PGM1 -605953 sc-eQTL 3.54e-01 -0.0752 0.0809 0.486 ncMono L2
ENSG00000088035 ALG6 -380117 sc-eQTL 1.01e-01 0.146 0.0885 0.486 ncMono L2
ENSG00000116641 DOCK7 299072 sc-eQTL 8.47e-01 0.0169 0.0877 0.486 ncMono L2
ENSG00000125703 ATG4C 203326 sc-eQTL 5.98e-02 0.154 0.0812 0.486 ncMono L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 2.53e-01 0.0979 0.0854 0.486 ncMono L2
ENSG00000162607 USP1 551161 sc-eQTL 1.66e-02 -0.209 0.0863 0.486 ncMono L2
ENSG00000240563 L1TD1 792609 sc-eQTL 9.27e-01 0.00569 0.0621 0.486 ncMono L2
ENSG00000079739 PGM1 -605953 sc-eQTL 2.53e-01 0.115 0.1 0.5 pDC L2
ENSG00000088035 ALG6 -380117 sc-eQTL 9.60e-01 0.00488 0.0978 0.5 pDC L2
ENSG00000116641 DOCK7 299072 sc-eQTL 2.08e-01 0.126 0.0994 0.5 pDC L2
ENSG00000125703 ATG4C 203326 sc-eQTL 7.54e-01 0.0282 0.0896 0.5 pDC L2
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.31e-01 0.0794 0.1 0.5 pDC L2
ENSG00000162607 USP1 551161 sc-eQTL 7.71e-01 0.0299 0.103 0.5 pDC L2
ENSG00000203965 EFCAB7 -535914 sc-eQTL 3.31e-01 0.0866 0.0888 0.5 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -605953 sc-eQTL 5.12e-01 0.0551 0.0839 0.487 B_Memory LOneK1K
ENSG00000088035 ALG6 -380117 sc-eQTL 7.13e-01 -0.0341 0.0928 0.487 B_Memory LOneK1K
ENSG00000116641 DOCK7 299072 sc-eQTL 9.98e-01 -0.000195 0.0806 0.487 B_Memory LOneK1K
ENSG00000125703 ATG4C 203326 sc-eQTL 3.30e-01 0.0635 0.065 0.487 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -606263 sc-eQTL 1.14e-01 -0.135 0.0851 0.487 B_Memory LOneK1K
ENSG00000162607 USP1 551161 sc-eQTL 1.19e-01 -0.129 0.0826 0.487 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -535914 sc-eQTL 2.69e-01 0.0985 0.0889 0.487 B_Memory LOneK1K
ENSG00000079739 PGM1 -605953 sc-eQTL 7.60e-01 0.0273 0.0892 0.487 B_Naive LOneK1K
ENSG00000088035 ALG6 -380117 sc-eQTL 5.14e-02 -0.178 0.0911 0.487 B_Naive LOneK1K
ENSG00000116641 DOCK7 299072 sc-eQTL 3.64e-01 0.078 0.0857 0.487 B_Naive LOneK1K
ENSG00000125703 ATG4C 203326 sc-eQTL 5.86e-01 -0.0357 0.0655 0.487 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.79e-01 0.0656 0.0925 0.487 B_Naive LOneK1K
ENSG00000162607 USP1 551161 sc-eQTL 4.85e-01 -0.0556 0.0795 0.487 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -535914 sc-eQTL 4.76e-01 -0.0663 0.093 0.487 B_Naive LOneK1K
ENSG00000079739 PGM1 -605953 sc-eQTL 3.33e-01 0.0821 0.0847 0.487 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -380117 sc-eQTL 1.93e-01 -0.107 0.0818 0.487 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 299072 sc-eQTL 3.02e-01 0.0854 0.0825 0.487 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 203326 sc-eQTL 5.26e-01 -0.0363 0.0571 0.487 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.08e-01 -0.0701 0.0845 0.487 CD14_Mono LOneK1K
ENSG00000162607 USP1 551161 sc-eQTL 7.46e-01 -0.0234 0.0723 0.487 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 792609 sc-eQTL 7.54e-01 0.0246 0.0784 0.487 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -605953 sc-eQTL 8.09e-02 -0.137 0.078 0.487 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -380117 sc-eQTL 2.22e-01 0.109 0.0889 0.487 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 299072 sc-eQTL 1.98e-01 0.113 0.0879 0.487 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 203326 sc-eQTL 2.32e-01 0.0899 0.075 0.487 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.79e-01 0.0618 0.0872 0.487 CD16_Mono LOneK1K
ENSG00000162607 USP1 551161 sc-eQTL 1.57e-01 -0.116 0.0817 0.487 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 792609 sc-eQTL 7.21e-01 0.02 0.056 0.487 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -605953 sc-eQTL 3.88e-01 -0.0591 0.0683 0.487 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -380117 sc-eQTL 3.26e-01 0.0808 0.082 0.487 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 299072 sc-eQTL 6.56e-01 0.0328 0.0736 0.487 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 203326 sc-eQTL 4.04e-01 0.0614 0.0734 0.487 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -606263 sc-eQTL 4.67e-01 0.0634 0.087 0.487 NK_CD56dim LOneK1K
ENSG00000162607 USP1 551161 sc-eQTL 6.44e-02 -0.146 0.0784 0.487 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -535914 sc-eQTL 6.14e-01 0.0486 0.0962 0.487 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000203965 \N -535914 4.68e-07 2.5e-07 7.87e-08 2.53e-07 1.05e-07 1.25e-07 3.42e-07 7.98e-08 2.53e-07 1.5e-07 3.21e-07 2.09e-07 4.05e-07 8.55e-08 1.01e-07 1.46e-07 9.53e-08 2.9e-07 9.71e-08 7.4e-08 1.6e-07 2.3e-07 2.26e-07 6.65e-08 3.55e-07 2.07e-07 1.74e-07 1.77e-07 2.03e-07 2.19e-07 1.76e-07 6.68e-08 5.64e-08 1.15e-07 1.31e-07 5.14e-08 6.67e-08 6.1e-08 4.82e-08 8.03e-08 3.46e-08 2.71e-07 3.37e-08 1.72e-08 7.89e-08 9.12e-09 1.03e-07 2.85e-09 5.49e-08