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Genes within 1Mb (chr1:62983146:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -610265 sc-eQTL 8.33e-01 -0.0165 0.0783 0.603 B L1
ENSG00000088035 ALG6 -384429 sc-eQTL 2.33e-01 -0.0966 0.0808 0.603 B L1
ENSG00000116641 DOCK7 294760 sc-eQTL 3.75e-01 0.0719 0.0809 0.603 B L1
ENSG00000125703 ATG4C 199014 sc-eQTL 8.53e-01 -0.0104 0.0564 0.603 B L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.31e-01 -0.0431 0.0897 0.603 B L1
ENSG00000162607 USP1 546849 sc-eQTL 4.02e-01 -0.0653 0.0777 0.603 B L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 9.08e-01 -0.0106 0.0919 0.603 B L1
ENSG00000079739 PGM1 -610265 sc-eQTL 2.78e-01 0.0748 0.0687 0.603 CD4T L1
ENSG00000088035 ALG6 -384429 sc-eQTL 3.64e-01 0.0691 0.0759 0.603 CD4T L1
ENSG00000116641 DOCK7 294760 sc-eQTL 6.63e-01 -0.0336 0.0769 0.603 CD4T L1
ENSG00000125703 ATG4C 199014 sc-eQTL 9.37e-01 -0.0049 0.0621 0.603 CD4T L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 9.55e-01 0.00499 0.0882 0.603 CD4T L1
ENSG00000162607 USP1 546849 sc-eQTL 1.97e-01 0.0777 0.0601 0.603 CD4T L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 4.32e-01 0.0622 0.0791 0.603 CD4T L1
ENSG00000079739 PGM1 -610265 sc-eQTL 7.10e-01 0.028 0.0753 0.603 CD8T L1
ENSG00000088035 ALG6 -384429 sc-eQTL 8.13e-01 0.0197 0.0831 0.603 CD8T L1
ENSG00000116641 DOCK7 294760 sc-eQTL 2.54e-01 0.0959 0.0839 0.603 CD8T L1
ENSG00000125703 ATG4C 199014 sc-eQTL 1.27e-01 -0.122 0.0795 0.603 CD8T L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 3.86e-01 0.0775 0.0892 0.603 CD8T L1
ENSG00000162607 USP1 546849 sc-eQTL 2.05e-02 0.161 0.0688 0.603 CD8T L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.22e-01 -0.109 0.0888 0.603 CD8T L1
ENSG00000079739 PGM1 -610265 sc-eQTL 8.87e-01 0.0116 0.0816 0.606 DC L1
ENSG00000088035 ALG6 -384429 sc-eQTL 7.89e-01 -0.0226 0.0842 0.606 DC L1
ENSG00000116641 DOCK7 294760 sc-eQTL 4.82e-03 0.241 0.0846 0.606 DC L1
ENSG00000125703 ATG4C 199014 sc-eQTL 6.75e-02 0.123 0.067 0.606 DC L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 1.86e-01 0.125 0.094 0.606 DC L1
ENSG00000162607 USP1 546849 sc-eQTL 7.52e-01 0.0261 0.0825 0.606 DC L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 1.90e-01 0.108 0.0819 0.606 DC L1
ENSG00000079739 PGM1 -610265 sc-eQTL 3.68e-01 -0.0746 0.0826 0.603 Mono L1
ENSG00000088035 ALG6 -384429 sc-eQTL 5.77e-01 -0.0482 0.0863 0.603 Mono L1
ENSG00000116641 DOCK7 294760 sc-eQTL 4.63e-01 0.0613 0.0834 0.603 Mono L1
ENSG00000125703 ATG4C 199014 sc-eQTL 7.12e-01 0.0209 0.0564 0.603 Mono L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.24e-01 0.0438 0.0891 0.603 Mono L1
ENSG00000162607 USP1 546849 sc-eQTL 8.29e-01 0.0158 0.0732 0.603 Mono L1
ENSG00000240563 L1TD1 788297 sc-eQTL 2.05e-01 -0.0866 0.0681 0.603 Mono L1
ENSG00000079739 PGM1 -610265 sc-eQTL 2.25e-01 -0.0843 0.0692 0.603 NK L1
ENSG00000088035 ALG6 -384429 sc-eQTL 3.51e-01 0.076 0.0812 0.603 NK L1
ENSG00000116641 DOCK7 294760 sc-eQTL 5.14e-01 -0.0438 0.067 0.603 NK L1
ENSG00000125703 ATG4C 199014 sc-eQTL 8.34e-01 0.0151 0.072 0.603 NK L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.56e-01 -0.0163 0.0895 0.603 NK L1
ENSG00000162607 USP1 546849 sc-eQTL 2.27e-01 -0.0965 0.0797 0.603 NK L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 4.75e-01 0.0694 0.0971 0.603 NK L1
ENSG00000079739 PGM1 -610265 sc-eQTL 4.59e-01 -0.058 0.0782 0.603 Other_T L1
ENSG00000088035 ALG6 -384429 sc-eQTL 6.55e-01 0.0352 0.0786 0.603 Other_T L1
ENSG00000116641 DOCK7 294760 sc-eQTL 9.84e-01 0.00162 0.0803 0.603 Other_T L1
ENSG00000125703 ATG4C 199014 sc-eQTL 6.19e-01 0.0346 0.0695 0.603 Other_T L1
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.10e-01 0.0149 0.0616 0.603 Other_T L1
ENSG00000162607 USP1 546849 sc-eQTL 3.85e-01 -0.0464 0.0533 0.603 Other_T L1
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.88e-02 -0.207 0.0941 0.603 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -610265 sc-eQTL 9.72e-01 -0.00388 0.109 0.592 B_Activated L2
ENSG00000088035 ALG6 -384429 sc-eQTL 8.94e-01 0.0139 0.105 0.592 B_Activated L2
ENSG00000116641 DOCK7 294760 sc-eQTL 3.39e-01 0.0931 0.0971 0.592 B_Activated L2
ENSG00000125703 ATG4C 199014 sc-eQTL 7.23e-02 0.184 0.101 0.592 B_Activated L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.13e-01 0.0237 0.1 0.592 B_Activated L2
ENSG00000162607 USP1 546849 sc-eQTL 5.68e-01 0.062 0.108 0.592 B_Activated L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.22e-01 -0.116 0.0943 0.592 B_Activated L2
ENSG00000079739 PGM1 -610265 sc-eQTL 2.47e-01 0.11 0.095 0.601 B_Intermediate L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.39e-01 0.0595 0.0967 0.601 B_Intermediate L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.68e-01 0.0154 0.0925 0.601 B_Intermediate L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.91e-01 -0.0421 0.0782 0.601 B_Intermediate L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.01e-02 -0.175 0.0925 0.601 B_Intermediate L2
ENSG00000162607 USP1 546849 sc-eQTL 9.36e-01 -0.00744 0.0931 0.601 B_Intermediate L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 3.99e-01 0.078 0.0922 0.601 B_Intermediate L2
ENSG00000079739 PGM1 -610265 sc-eQTL 8.82e-01 -0.0138 0.0934 0.606 B_Memory L2
ENSG00000088035 ALG6 -384429 sc-eQTL 2.90e-02 -0.207 0.0939 0.606 B_Memory L2
ENSG00000116641 DOCK7 294760 sc-eQTL 3.01e-01 -0.0922 0.0889 0.606 B_Memory L2
ENSG00000125703 ATG4C 199014 sc-eQTL 2.23e-01 0.103 0.0844 0.606 B_Memory L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.55e-01 -0.0572 0.0968 0.606 B_Memory L2
ENSG00000162607 USP1 546849 sc-eQTL 6.24e-02 -0.182 0.097 0.606 B_Memory L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.58e-02 0.17 0.0955 0.606 B_Memory L2
ENSG00000079739 PGM1 -610265 sc-eQTL 3.68e-01 -0.085 0.0943 0.603 B_Naive1 L2
ENSG00000088035 ALG6 -384429 sc-eQTL 2.46e-01 -0.11 0.0945 0.603 B_Naive1 L2
ENSG00000116641 DOCK7 294760 sc-eQTL 6.87e-01 0.0366 0.0908 0.603 B_Naive1 L2
ENSG00000125703 ATG4C 199014 sc-eQTL 3.08e-01 -0.0713 0.0698 0.603 B_Naive1 L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.06e-01 0.0618 0.0927 0.603 B_Naive1 L2
ENSG00000162607 USP1 546849 sc-eQTL 9.24e-01 -0.0078 0.0816 0.603 B_Naive1 L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 6.64e-01 0.0431 0.099 0.603 B_Naive1 L2
ENSG00000079739 PGM1 -610265 sc-eQTL 5.45e-01 0.0564 0.093 0.605 B_Naive2 L2
ENSG00000088035 ALG6 -384429 sc-eQTL 1.06e-01 -0.156 0.0964 0.605 B_Naive2 L2
ENSG00000116641 DOCK7 294760 sc-eQTL 6.44e-01 0.0432 0.0933 0.605 B_Naive2 L2
ENSG00000125703 ATG4C 199014 sc-eQTL 7.24e-01 -0.0318 0.0898 0.605 B_Naive2 L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 7.65e-01 0.0291 0.0974 0.605 B_Naive2 L2
ENSG00000162607 USP1 546849 sc-eQTL 7.98e-02 0.162 0.0921 0.605 B_Naive2 L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 1.28e-01 -0.147 0.0964 0.605 B_Naive2 L2
ENSG00000079739 PGM1 -610265 sc-eQTL 8.01e-01 -0.0236 0.0935 0.609 CD4_CTL L2
ENSG00000088035 ALG6 -384429 sc-eQTL 9.01e-02 0.167 0.0981 0.609 CD4_CTL L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.56e-01 0.0157 0.0864 0.609 CD4_CTL L2
ENSG00000125703 ATG4C 199014 sc-eQTL 1.00e+00 4.46e-05 0.0894 0.609 CD4_CTL L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.99e-02 0.162 0.0949 0.609 CD4_CTL L2
ENSG00000162607 USP1 546849 sc-eQTL 9.96e-02 0.15 0.0904 0.609 CD4_CTL L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.58e-01 -0.028 0.0908 0.609 CD4_CTL L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.51e-01 0.11 0.0766 0.603 CD4_Naive L2
ENSG00000088035 ALG6 -384429 sc-eQTL 9.42e-01 -0.00612 0.0836 0.603 CD4_Naive L2
ENSG00000116641 DOCK7 294760 sc-eQTL 7.49e-01 -0.0264 0.0822 0.603 CD4_Naive L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.28e-01 0.0158 0.0726 0.603 CD4_Naive L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.92e-01 -0.0121 0.0888 0.603 CD4_Naive L2
ENSG00000162607 USP1 546849 sc-eQTL 2.74e-01 0.0741 0.0676 0.603 CD4_Naive L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 3.11e-01 0.0892 0.0879 0.603 CD4_Naive L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.53e-01 0.114 0.0798 0.603 CD4_TCM L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.82e-01 0.0513 0.093 0.603 CD4_TCM L2
ENSG00000116641 DOCK7 294760 sc-eQTL 4.29e-01 -0.0652 0.0824 0.603 CD4_TCM L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.16e-01 0.0187 0.0803 0.603 CD4_TCM L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 4.94e-01 -0.0648 0.0946 0.603 CD4_TCM L2
ENSG00000162607 USP1 546849 sc-eQTL 5.03e-01 0.052 0.0775 0.603 CD4_TCM L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.70e-01 -0.0269 0.0916 0.603 CD4_TCM L2
ENSG00000079739 PGM1 -610265 sc-eQTL 8.87e-01 -0.0134 0.0942 0.603 CD4_TEM L2
ENSG00000088035 ALG6 -384429 sc-eQTL 3.85e-01 0.0823 0.0945 0.603 CD4_TEM L2
ENSG00000116641 DOCK7 294760 sc-eQTL 6.82e-01 -0.0379 0.0922 0.603 CD4_TEM L2
ENSG00000125703 ATG4C 199014 sc-eQTL 7.98e-01 -0.0229 0.0896 0.603 CD4_TEM L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 7.14e-01 -0.0339 0.0925 0.603 CD4_TEM L2
ENSG00000162607 USP1 546849 sc-eQTL 4.05e-01 0.073 0.0875 0.603 CD4_TEM L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.71e-01 0.105 0.0956 0.603 CD4_TEM L2
ENSG00000079739 PGM1 -610265 sc-eQTL 4.96e-01 0.058 0.085 0.603 CD8_CTL L2
ENSG00000088035 ALG6 -384429 sc-eQTL 9.51e-02 0.151 0.0898 0.603 CD8_CTL L2
ENSG00000116641 DOCK7 294760 sc-eQTL 2.74e-02 0.188 0.0848 0.603 CD8_CTL L2
ENSG00000125703 ATG4C 199014 sc-eQTL 1.93e-01 -0.119 0.091 0.603 CD8_CTL L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.09e-01 0.0628 0.0949 0.603 CD8_CTL L2
ENSG00000162607 USP1 546849 sc-eQTL 3.12e-01 0.0859 0.0849 0.603 CD8_CTL L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 1.17e-01 -0.152 0.0967 0.603 CD8_CTL L2
ENSG00000079739 PGM1 -610265 sc-eQTL 4.76e-01 0.0614 0.086 0.603 CD8_Naive L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.82e-01 -0.0491 0.0891 0.603 CD8_Naive L2
ENSG00000116641 DOCK7 294760 sc-eQTL 1.84e-01 0.122 0.0918 0.603 CD8_Naive L2
ENSG00000125703 ATG4C 199014 sc-eQTL 1.12e-01 -0.14 0.0879 0.603 CD8_Naive L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.31e-01 0.043 0.0896 0.603 CD8_Naive L2
ENSG00000162607 USP1 546849 sc-eQTL 8.36e-02 0.131 0.0752 0.603 CD8_Naive L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 6.93e-01 0.0334 0.0844 0.603 CD8_Naive L2
ENSG00000079739 PGM1 -610265 sc-eQTL 6.56e-01 0.0432 0.0968 0.609 CD8_TCM L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.33e-01 -0.0612 0.098 0.609 CD8_TCM L2
ENSG00000116641 DOCK7 294760 sc-eQTL 6.30e-01 0.0461 0.0957 0.609 CD8_TCM L2
ENSG00000125703 ATG4C 199014 sc-eQTL 2.55e-01 -0.111 0.0976 0.609 CD8_TCM L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 4.62e-01 -0.0701 0.095 0.609 CD8_TCM L2
ENSG00000162607 USP1 546849 sc-eQTL 8.67e-01 0.0154 0.0915 0.609 CD8_TCM L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 6.47e-02 -0.179 0.0961 0.609 CD8_TCM L2
ENSG00000079739 PGM1 -610265 sc-eQTL 4.31e-01 0.077 0.0975 0.6 CD8_TEM L2
ENSG00000088035 ALG6 -384429 sc-eQTL 6.04e-01 -0.0509 0.098 0.6 CD8_TEM L2
ENSG00000116641 DOCK7 294760 sc-eQTL 9.18e-01 0.0098 0.095 0.6 CD8_TEM L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.69e-01 -0.0151 0.0913 0.6 CD8_TEM L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.81e-01 -0.0546 0.0988 0.6 CD8_TEM L2
ENSG00000162607 USP1 546849 sc-eQTL 1.26e-01 0.144 0.0938 0.6 CD8_TEM L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 5.89e-01 -0.0519 0.0958 0.6 CD8_TEM L2
ENSG00000079739 PGM1 -610265 sc-eQTL 7.76e-01 0.0262 0.0921 0.602 MAIT L2
ENSG00000088035 ALG6 -384429 sc-eQTL 6.18e-01 0.0455 0.0911 0.602 MAIT L2
ENSG00000116641 DOCK7 294760 sc-eQTL 3.07e-01 0.0893 0.0871 0.602 MAIT L2
ENSG00000125703 ATG4C 199014 sc-eQTL 6.57e-01 -0.0409 0.0921 0.602 MAIT L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.05e-01 0.0616 0.0922 0.602 MAIT L2
ENSG00000162607 USP1 546849 sc-eQTL 7.88e-01 -0.0247 0.0916 0.602 MAIT L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 4.91e-01 -0.0656 0.0949 0.602 MAIT L2
ENSG00000079739 PGM1 -610265 sc-eQTL 5.03e-01 -0.0619 0.0922 0.602 NK_CD56bright L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.90e-01 0.051 0.0945 0.602 NK_CD56bright L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.95e-01 -0.0108 0.0819 0.602 NK_CD56bright L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.98e-01 0.0483 0.0915 0.602 NK_CD56bright L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 1.59e-02 -0.229 0.094 0.602 NK_CD56bright L2
ENSG00000162607 USP1 546849 sc-eQTL 6.23e-01 -0.0483 0.0982 0.602 NK_CD56bright L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 8.91e-01 0.0129 0.094 0.602 NK_CD56bright L2
ENSG00000079739 PGM1 -610265 sc-eQTL 2.15e-01 -0.0895 0.0719 0.603 NK_CD56dim L2
ENSG00000088035 ALG6 -384429 sc-eQTL 6.03e-01 0.0476 0.0915 0.603 NK_CD56dim L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.22e-01 -0.0179 0.0796 0.603 NK_CD56dim L2
ENSG00000125703 ATG4C 199014 sc-eQTL 7.68e-01 0.0239 0.0809 0.603 NK_CD56dim L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.96e-01 0.012 0.0921 0.603 NK_CD56dim L2
ENSG00000162607 USP1 546849 sc-eQTL 2.61e-01 -0.1 0.089 0.603 NK_CD56dim L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.70e-01 0.0291 0.0994 0.603 NK_CD56dim L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.88e-01 -0.129 0.0974 0.607 NK_HLA L2
ENSG00000088035 ALG6 -384429 sc-eQTL 4.62e-01 0.0746 0.101 0.607 NK_HLA L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.59e-01 0.0138 0.0775 0.607 NK_HLA L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.09e-01 -0.0595 0.0901 0.607 NK_HLA L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 2.76e-01 0.103 0.0944 0.607 NK_HLA L2
ENSG00000162607 USP1 546849 sc-eQTL 3.16e-01 -0.0993 0.0988 0.607 NK_HLA L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 3.41e-01 -0.0859 0.09 0.607 NK_HLA L2
ENSG00000079739 PGM1 -610265 sc-eQTL 2.53e-01 -0.091 0.0793 0.603 NK_cytokine L2
ENSG00000088035 ALG6 -384429 sc-eQTL 9.74e-01 -0.0029 0.0899 0.603 NK_cytokine L2
ENSG00000116641 DOCK7 294760 sc-eQTL 3.34e-01 -0.0805 0.0831 0.603 NK_cytokine L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.91e-01 -0.0458 0.0851 0.603 NK_cytokine L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 9.00e-01 0.0111 0.0882 0.603 NK_cytokine L2
ENSG00000162607 USP1 546849 sc-eQTL 8.30e-01 0.0199 0.0927 0.603 NK_cytokine L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 8.52e-02 0.161 0.0933 0.603 NK_cytokine L2
ENSG00000079739 PGM1 -610265 sc-eQTL 5.67e-01 0.0633 0.11 0.6 PB L2
ENSG00000088035 ALG6 -384429 sc-eQTL 2.20e-01 0.142 0.115 0.6 PB L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.91e-01 -0.0171 0.124 0.6 PB L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.85e-01 0.0157 0.108 0.6 PB L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.23e-01 -0.069 0.108 0.6 PB L2
ENSG00000162607 USP1 546849 sc-eQTL 1.74e-02 -0.253 0.105 0.6 PB L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 1.19e-01 -0.184 0.117 0.6 PB L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.85e-01 -0.115 0.0864 0.6 Pro_T L2
ENSG00000088035 ALG6 -384429 sc-eQTL 1.16e-01 0.138 0.0877 0.6 Pro_T L2
ENSG00000116641 DOCK7 294760 sc-eQTL 3.36e-01 0.0852 0.0883 0.6 Pro_T L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.04e-01 0.0518 0.0774 0.6 Pro_T L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.71e-01 0.0126 0.0777 0.6 Pro_T L2
ENSG00000162607 USP1 546849 sc-eQTL 9.96e-01 0.000237 0.0535 0.6 Pro_T L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.64e-03 -0.239 0.0888 0.6 Pro_T L2
ENSG00000079739 PGM1 -610265 sc-eQTL 8.24e-01 0.0201 0.0902 0.603 Treg L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.77e-01 -0.0538 0.0964 0.603 Treg L2
ENSG00000116641 DOCK7 294760 sc-eQTL 2.25e-01 -0.107 0.0883 0.603 Treg L2
ENSG00000125703 ATG4C 199014 sc-eQTL 4.43e-01 0.0695 0.0904 0.603 Treg L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 7.82e-01 0.0262 0.0947 0.603 Treg L2
ENSG00000162607 USP1 546849 sc-eQTL 1.64e-01 0.127 0.0912 0.603 Treg L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.04e-01 -0.115 0.0902 0.603 Treg L2
ENSG00000079739 PGM1 -610265 sc-eQTL 5.72e-01 0.0517 0.0912 0.598 cDC L2
ENSG00000088035 ALG6 -384429 sc-eQTL 6.94e-01 -0.0365 0.0926 0.598 cDC L2
ENSG00000116641 DOCK7 294760 sc-eQTL 1.29e-01 0.138 0.0903 0.598 cDC L2
ENSG00000125703 ATG4C 199014 sc-eQTL 2.19e-01 0.097 0.0786 0.598 cDC L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.91e-01 0.0398 0.1 0.598 cDC L2
ENSG00000162607 USP1 546849 sc-eQTL 7.22e-01 0.0317 0.089 0.598 cDC L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 7.43e-01 -0.0264 0.0803 0.598 cDC L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.00e+00 -3.23e-05 0.0852 0.603 cMono_IL1B L2
ENSG00000088035 ALG6 -384429 sc-eQTL 2.45e-01 -0.0991 0.085 0.603 cMono_IL1B L2
ENSG00000116641 DOCK7 294760 sc-eQTL 2.29e-01 0.108 0.0896 0.603 cMono_IL1B L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.98e-01 -0.00815 0.0633 0.603 cMono_IL1B L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.95e-01 -0.0477 0.0895 0.603 cMono_IL1B L2
ENSG00000162607 USP1 546849 sc-eQTL 8.60e-01 0.014 0.079 0.603 cMono_IL1B L2
ENSG00000240563 L1TD1 788297 sc-eQTL 6.04e-01 -0.0412 0.0793 0.603 cMono_IL1B L2
ENSG00000079739 PGM1 -610265 sc-eQTL 9.53e-01 0.00581 0.0989 0.603 cMono_S100A L2
ENSG00000088035 ALG6 -384429 sc-eQTL 4.99e-01 -0.0678 0.1 0.603 cMono_S100A L2
ENSG00000116641 DOCK7 294760 sc-eQTL 2.33e-01 -0.111 0.0926 0.603 cMono_S100A L2
ENSG00000125703 ATG4C 199014 sc-eQTL 8.89e-01 -0.0112 0.0805 0.603 cMono_S100A L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.37e-01 0.0186 0.0908 0.603 cMono_S100A L2
ENSG00000162607 USP1 546849 sc-eQTL 7.74e-01 0.0269 0.0934 0.603 cMono_S100A L2
ENSG00000240563 L1TD1 788297 sc-eQTL 3.49e-02 -0.163 0.0769 0.603 cMono_S100A L2
ENSG00000079739 PGM1 -610265 sc-eQTL 6.59e-01 -0.0475 0.107 0.591 gdT L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.09e-02 -0.223 0.113 0.591 gdT L2
ENSG00000116641 DOCK7 294760 sc-eQTL 8.67e-01 -0.0189 0.112 0.591 gdT L2
ENSG00000125703 ATG4C 199014 sc-eQTL 1.90e-01 0.141 0.107 0.591 gdT L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 5.27e-01 0.0723 0.114 0.591 gdT L2
ENSG00000162607 USP1 546849 sc-eQTL 3.61e-01 -0.0987 0.108 0.591 gdT L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 9.90e-02 -0.185 0.111 0.591 gdT L2
ENSG00000079739 PGM1 -610265 sc-eQTL 1.08e-01 -0.154 0.0953 0.604 intMono L2
ENSG00000088035 ALG6 -384429 sc-eQTL 8.81e-02 -0.152 0.0887 0.604 intMono L2
ENSG00000116641 DOCK7 294760 sc-eQTL 2.74e-01 0.0997 0.0909 0.604 intMono L2
ENSG00000125703 ATG4C 199014 sc-eQTL 6.28e-01 0.0422 0.087 0.604 intMono L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 6.96e-01 -0.0375 0.0959 0.604 intMono L2
ENSG00000162607 USP1 546849 sc-eQTL 6.38e-01 0.0459 0.0975 0.604 intMono L2
ENSG00000240563 L1TD1 788297 sc-eQTL 1.63e-01 0.1 0.0714 0.604 intMono L2
ENSG00000079739 PGM1 -610265 sc-eQTL 4.62e-01 -0.062 0.0841 0.6 ncMono L2
ENSG00000088035 ALG6 -384429 sc-eQTL 2.24e-02 0.21 0.0914 0.6 ncMono L2
ENSG00000116641 DOCK7 294760 sc-eQTL 6.57e-01 0.0405 0.0911 0.6 ncMono L2
ENSG00000125703 ATG4C 199014 sc-eQTL 1.10e-01 0.136 0.0846 0.6 ncMono L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 2.32e-02 0.201 0.0879 0.6 ncMono L2
ENSG00000162607 USP1 546849 sc-eQTL 1.10e-02 -0.23 0.0895 0.6 ncMono L2
ENSG00000240563 L1TD1 788297 sc-eQTL 8.74e-01 -0.0102 0.0645 0.6 ncMono L2
ENSG00000079739 PGM1 -610265 sc-eQTL 6.11e-01 0.055 0.108 0.616 pDC L2
ENSG00000088035 ALG6 -384429 sc-eQTL 5.16e-01 0.0684 0.105 0.616 pDC L2
ENSG00000116641 DOCK7 294760 sc-eQTL 1.87e-01 0.142 0.107 0.616 pDC L2
ENSG00000125703 ATG4C 199014 sc-eQTL 5.17e-01 0.0625 0.0963 0.616 pDC L2
ENSG00000142856 ITGB3BP -610575 sc-eQTL 2.72e-01 0.119 0.108 0.616 pDC L2
ENSG00000162607 USP1 546849 sc-eQTL 5.17e-01 0.0716 0.11 0.616 pDC L2
ENSG00000203965 EFCAB7 -540226 sc-eQTL 3.34e-01 0.0925 0.0955 0.616 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -610265 sc-eQTL 3.73e-01 0.0782 0.0876 0.603 B_Memory LOneK1K
ENSG00000088035 ALG6 -384429 sc-eQTL 5.88e-01 -0.0527 0.097 0.603 B_Memory LOneK1K
ENSG00000116641 DOCK7 294760 sc-eQTL 9.57e-01 -0.00452 0.0843 0.603 B_Memory LOneK1K
ENSG00000125703 ATG4C 199014 sc-eQTL 4.00e-01 0.0573 0.068 0.603 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -610575 sc-eQTL 4.47e-02 -0.179 0.0887 0.603 B_Memory LOneK1K
ENSG00000162607 USP1 546849 sc-eQTL 3.57e-01 -0.0801 0.0867 0.603 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.31e-01 0.112 0.093 0.603 B_Memory LOneK1K
ENSG00000079739 PGM1 -610265 sc-eQTL 8.60e-01 -0.0164 0.0927 0.603 B_Naive LOneK1K
ENSG00000088035 ALG6 -384429 sc-eQTL 4.80e-02 -0.188 0.0946 0.603 B_Naive LOneK1K
ENSG00000116641 DOCK7 294760 sc-eQTL 4.73e-01 0.064 0.0891 0.603 B_Naive LOneK1K
ENSG00000125703 ATG4C 199014 sc-eQTL 2.93e-01 -0.0716 0.0679 0.603 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -610575 sc-eQTL 3.38e-01 0.0922 0.096 0.603 B_Naive LOneK1K
ENSG00000162607 USP1 546849 sc-eQTL 7.12e-01 0.0305 0.0826 0.603 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -540226 sc-eQTL 5.46e-01 -0.0585 0.0966 0.603 B_Naive LOneK1K
ENSG00000079739 PGM1 -610265 sc-eQTL 7.33e-01 -0.0301 0.0882 0.603 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -384429 sc-eQTL 2.66e-01 -0.0951 0.0852 0.603 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 294760 sc-eQTL 5.27e-01 0.0545 0.086 0.603 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 199014 sc-eQTL 8.79e-01 -0.00909 0.0595 0.603 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -610575 sc-eQTL 8.48e-01 -0.0169 0.088 0.603 CD14_Mono LOneK1K
ENSG00000162607 USP1 546849 sc-eQTL 2.91e-01 0.0794 0.075 0.603 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 788297 sc-eQTL 5.02e-01 -0.0548 0.0814 0.603 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -610265 sc-eQTL 1.42e-02 -0.199 0.0805 0.603 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -384429 sc-eQTL 3.41e-01 0.0884 0.0925 0.603 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 294760 sc-eQTL 1.36e-01 0.137 0.0912 0.603 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 199014 sc-eQTL 4.91e-01 0.0539 0.0781 0.603 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -610575 sc-eQTL 1.94e-01 0.118 0.0904 0.603 CD16_Mono LOneK1K
ENSG00000162607 USP1 546849 sc-eQTL 3.28e-01 -0.0835 0.0851 0.603 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 788297 sc-eQTL 5.66e-01 0.0334 0.0581 0.603 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -610265 sc-eQTL 2.64e-01 -0.079 0.0705 0.603 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -384429 sc-eQTL 4.84e-01 0.0595 0.0849 0.603 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 294760 sc-eQTL 4.61e-01 -0.0562 0.076 0.603 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 199014 sc-eQTL 9.46e-01 -0.00513 0.076 0.603 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -610575 sc-eQTL 9.21e-01 0.009 0.09 0.603 NK_CD56dim LOneK1K
ENSG00000162607 USP1 546849 sc-eQTL 1.86e-01 -0.108 0.0814 0.603 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -540226 sc-eQTL 2.87e-01 0.106 0.0992 0.603 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -563936 5.37e-07 2.56e-07 8.83e-08 2.48e-07 9.93e-08 1.26e-07 3.7e-07 9.07e-08 2.76e-07 1.6e-07 3.32e-07 2.33e-07 4.34e-07 8.85e-08 1.18e-07 1.63e-07 1.18e-07 2.96e-07 1.27e-07 7.84e-08 1.6e-07 2.51e-07 2.48e-07 9.63e-08 3.7e-07 2.2e-07 1.83e-07 1.69e-07 2.13e-07 2.26e-07 1.86e-07 6.04e-08 4.93e-08 1.21e-07 1.33e-07 5.51e-08 6.57e-08 5.8e-08 5.25e-08 7.89e-08 4.36e-08 2.71e-07 3.09e-08 7.28e-09 7.89e-08 8.42e-09 1.05e-07 0.0 5.16e-08