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Genes within 1Mb (chr1:62980840:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -612571 sc-eQTL 8.37e-01 -0.0318 0.154 0.934 B L1
ENSG00000088035 ALG6 -386735 sc-eQTL 6.52e-01 0.072 0.16 0.934 B L1
ENSG00000116641 DOCK7 292454 sc-eQTL 3.77e-01 -0.141 0.159 0.934 B L1
ENSG00000125703 ATG4C 196708 sc-eQTL 4.97e-01 0.0754 0.111 0.934 B L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.70e-01 0.195 0.176 0.934 B L1
ENSG00000162607 USP1 544543 sc-eQTL 6.65e-01 -0.0664 0.153 0.934 B L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 9.61e-01 0.00881 0.181 0.934 B L1
ENSG00000079739 PGM1 -612571 sc-eQTL 9.01e-01 -0.0166 0.133 0.934 CD4T L1
ENSG00000088035 ALG6 -386735 sc-eQTL 1.35e-01 0.219 0.146 0.934 CD4T L1
ENSG00000116641 DOCK7 292454 sc-eQTL 5.89e-01 -0.0802 0.148 0.934 CD4T L1
ENSG00000125703 ATG4C 196708 sc-eQTL 2.89e-01 -0.127 0.12 0.934 CD4T L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.21e-01 0.263 0.169 0.934 CD4T L1
ENSG00000162607 USP1 544543 sc-eQTL 7.85e-01 -0.0317 0.116 0.934 CD4T L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 2.56e-01 0.173 0.152 0.934 CD4T L1
ENSG00000079739 PGM1 -612571 sc-eQTL 1.35e-02 0.354 0.142 0.934 CD8T L1
ENSG00000088035 ALG6 -386735 sc-eQTL 9.78e-01 -0.00437 0.159 0.934 CD8T L1
ENSG00000116641 DOCK7 292454 sc-eQTL 4.72e-02 -0.319 0.16 0.934 CD8T L1
ENSG00000125703 ATG4C 196708 sc-eQTL 3.29e-01 -0.149 0.153 0.934 CD8T L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.06e-01 0.042 0.171 0.934 CD8T L1
ENSG00000162607 USP1 544543 sc-eQTL 2.98e-01 0.139 0.133 0.934 CD8T L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 9.54e-01 -0.00986 0.171 0.934 CD8T L1
ENSG00000079739 PGM1 -612571 sc-eQTL 8.89e-01 0.0226 0.162 0.935 DC L1
ENSG00000088035 ALG6 -386735 sc-eQTL 7.05e-01 -0.0634 0.167 0.935 DC L1
ENSG00000116641 DOCK7 292454 sc-eQTL 1.28e-01 0.261 0.17 0.935 DC L1
ENSG00000125703 ATG4C 196708 sc-eQTL 7.76e-02 0.236 0.133 0.935 DC L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 5.43e-01 0.114 0.187 0.935 DC L1
ENSG00000162607 USP1 544543 sc-eQTL 3.41e-01 0.156 0.163 0.935 DC L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 6.79e-01 -0.0676 0.163 0.935 DC L1
ENSG00000079739 PGM1 -612571 sc-eQTL 2.15e-01 -0.197 0.159 0.934 Mono L1
ENSG00000088035 ALG6 -386735 sc-eQTL 5.55e-01 0.0982 0.166 0.934 Mono L1
ENSG00000116641 DOCK7 292454 sc-eQTL 6.03e-01 0.0837 0.161 0.934 Mono L1
ENSG00000125703 ATG4C 196708 sc-eQTL 2.49e-01 0.125 0.108 0.934 Mono L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.47e-01 0.248 0.171 0.934 Mono L1
ENSG00000162607 USP1 544543 sc-eQTL 8.14e-01 0.0332 0.141 0.934 Mono L1
ENSG00000240563 L1TD1 785991 sc-eQTL 4.46e-02 0.263 0.13 0.934 Mono L1
ENSG00000079739 PGM1 -612571 sc-eQTL 7.95e-01 -0.0352 0.135 0.933 NK L1
ENSG00000088035 ALG6 -386735 sc-eQTL 8.40e-01 0.032 0.159 0.933 NK L1
ENSG00000116641 DOCK7 292454 sc-eQTL 7.15e-01 -0.0478 0.131 0.933 NK L1
ENSG00000125703 ATG4C 196708 sc-eQTL 8.57e-01 0.0253 0.14 0.933 NK L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 5.31e-01 -0.109 0.174 0.933 NK L1
ENSG00000162607 USP1 544543 sc-eQTL 5.74e-01 -0.0877 0.156 0.933 NK L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 3.72e-01 0.169 0.189 0.933 NK L1
ENSG00000079739 PGM1 -612571 sc-eQTL 3.92e-01 -0.131 0.152 0.934 Other_T L1
ENSG00000088035 ALG6 -386735 sc-eQTL 9.84e-01 0.00312 0.153 0.934 Other_T L1
ENSG00000116641 DOCK7 292454 sc-eQTL 1.10e-01 -0.25 0.156 0.934 Other_T L1
ENSG00000125703 ATG4C 196708 sc-eQTL 6.43e-01 0.0628 0.135 0.934 Other_T L1
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.54e-01 -0.0377 0.12 0.934 Other_T L1
ENSG00000162607 USP1 544543 sc-eQTL 5.49e-01 0.0624 0.104 0.934 Other_T L1
ENSG00000203965 EFCAB7 -542532 sc-eQTL 6.53e-01 0.0834 0.185 0.934 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -612571 sc-eQTL 6.94e-01 -0.0804 0.204 0.931 B_Activated L2
ENSG00000088035 ALG6 -386735 sc-eQTL 1.05e-01 -0.317 0.194 0.931 B_Activated L2
ENSG00000116641 DOCK7 292454 sc-eQTL 6.19e-02 0.339 0.18 0.931 B_Activated L2
ENSG00000125703 ATG4C 196708 sc-eQTL 1.66e-01 0.265 0.19 0.931 B_Activated L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 4.65e-01 0.137 0.187 0.931 B_Activated L2
ENSG00000162607 USP1 544543 sc-eQTL 3.53e-01 -0.188 0.202 0.931 B_Activated L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 8.89e-01 0.0246 0.177 0.931 B_Activated L2
ENSG00000079739 PGM1 -612571 sc-eQTL 6.78e-01 -0.0768 0.184 0.933 B_Intermediate L2
ENSG00000088035 ALG6 -386735 sc-eQTL 8.91e-01 0.0256 0.187 0.933 B_Intermediate L2
ENSG00000116641 DOCK7 292454 sc-eQTL 6.04e-01 -0.0928 0.179 0.933 B_Intermediate L2
ENSG00000125703 ATG4C 196708 sc-eQTL 7.70e-01 -0.0444 0.151 0.933 B_Intermediate L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.75e-01 -0.0516 0.18 0.933 B_Intermediate L2
ENSG00000162607 USP1 544543 sc-eQTL 8.47e-01 0.0348 0.18 0.933 B_Intermediate L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.08e-01 0.148 0.178 0.933 B_Intermediate L2
ENSG00000079739 PGM1 -612571 sc-eQTL 5.59e-01 -0.105 0.18 0.935 B_Memory L2
ENSG00000088035 ALG6 -386735 sc-eQTL 5.77e-01 -0.102 0.183 0.935 B_Memory L2
ENSG00000116641 DOCK7 292454 sc-eQTL 3.12e-01 -0.174 0.172 0.935 B_Memory L2
ENSG00000125703 ATG4C 196708 sc-eQTL 7.13e-01 -0.0603 0.163 0.935 B_Memory L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.44e-01 -0.0368 0.187 0.935 B_Memory L2
ENSG00000162607 USP1 544543 sc-eQTL 1.45e-01 0.275 0.188 0.935 B_Memory L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 2.92e-02 0.403 0.184 0.935 B_Memory L2
ENSG00000079739 PGM1 -612571 sc-eQTL 9.50e-01 0.0116 0.185 0.934 B_Naive1 L2
ENSG00000088035 ALG6 -386735 sc-eQTL 1.92e-01 0.241 0.185 0.934 B_Naive1 L2
ENSG00000116641 DOCK7 292454 sc-eQTL 8.98e-01 -0.0227 0.178 0.934 B_Naive1 L2
ENSG00000125703 ATG4C 196708 sc-eQTL 6.97e-01 0.0533 0.137 0.934 B_Naive1 L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.78e-01 0.244 0.181 0.934 B_Naive1 L2
ENSG00000162607 USP1 544543 sc-eQTL 2.83e-01 -0.171 0.159 0.934 B_Naive1 L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 7.25e-01 0.0681 0.193 0.934 B_Naive1 L2
ENSG00000079739 PGM1 -612571 sc-eQTL 8.45e-01 -0.0351 0.18 0.936 B_Naive2 L2
ENSG00000088035 ALG6 -386735 sc-eQTL 4.30e-01 0.148 0.187 0.936 B_Naive2 L2
ENSG00000116641 DOCK7 292454 sc-eQTL 9.59e-01 -0.00918 0.18 0.936 B_Naive2 L2
ENSG00000125703 ATG4C 196708 sc-eQTL 8.03e-01 -0.0433 0.174 0.936 B_Naive2 L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 4.01e-01 0.158 0.188 0.936 B_Naive2 L2
ENSG00000162607 USP1 544543 sc-eQTL 3.93e-01 0.153 0.179 0.936 B_Naive2 L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.78e-02 -0.369 0.186 0.936 B_Naive2 L2
ENSG00000079739 PGM1 -612571 sc-eQTL 5.06e-01 0.123 0.185 0.936 CD4_CTL L2
ENSG00000088035 ALG6 -386735 sc-eQTL 8.96e-02 0.332 0.194 0.936 CD4_CTL L2
ENSG00000116641 DOCK7 292454 sc-eQTL 5.26e-02 -0.331 0.17 0.936 CD4_CTL L2
ENSG00000125703 ATG4C 196708 sc-eQTL 9.51e-01 0.0109 0.177 0.936 CD4_CTL L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.47e-01 -0.219 0.189 0.936 CD4_CTL L2
ENSG00000162607 USP1 544543 sc-eQTL 4.11e-02 0.367 0.178 0.936 CD4_CTL L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 5.34e-01 0.112 0.18 0.936 CD4_CTL L2
ENSG00000079739 PGM1 -612571 sc-eQTL 6.49e-01 -0.0683 0.15 0.934 CD4_Naive L2
ENSG00000088035 ALG6 -386735 sc-eQTL 9.86e-01 -0.00282 0.163 0.934 CD4_Naive L2
ENSG00000116641 DOCK7 292454 sc-eQTL 2.69e-01 -0.176 0.159 0.934 CD4_Naive L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.71e-01 -0.155 0.141 0.934 CD4_Naive L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 4.36e-02 0.347 0.171 0.934 CD4_Naive L2
ENSG00000162607 USP1 544543 sc-eQTL 7.16e-01 0.0481 0.132 0.934 CD4_Naive L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.19e-01 0.139 0.171 0.934 CD4_Naive L2
ENSG00000079739 PGM1 -612571 sc-eQTL 1.05e-01 0.25 0.153 0.934 CD4_TCM L2
ENSG00000088035 ALG6 -386735 sc-eQTL 7.58e-02 0.317 0.178 0.934 CD4_TCM L2
ENSG00000116641 DOCK7 292454 sc-eQTL 2.01e-01 0.203 0.158 0.934 CD4_TCM L2
ENSG00000125703 ATG4C 196708 sc-eQTL 3.71e-01 -0.138 0.154 0.934 CD4_TCM L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 3.44e-01 0.173 0.182 0.934 CD4_TCM L2
ENSG00000162607 USP1 544543 sc-eQTL 6.25e-01 -0.0732 0.149 0.934 CD4_TCM L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 7.25e-01 0.0622 0.176 0.934 CD4_TCM L2
ENSG00000079739 PGM1 -612571 sc-eQTL 6.21e-01 -0.0897 0.181 0.934 CD4_TEM L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.43e-01 0.0847 0.182 0.934 CD4_TEM L2
ENSG00000116641 DOCK7 292454 sc-eQTL 4.82e-01 0.125 0.178 0.934 CD4_TEM L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.85e-01 0.185 0.172 0.934 CD4_TEM L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 3.88e-01 -0.154 0.178 0.934 CD4_TEM L2
ENSG00000162607 USP1 544543 sc-eQTL 7.88e-01 0.0454 0.169 0.934 CD4_TEM L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 1.85e-01 0.244 0.184 0.934 CD4_TEM L2
ENSG00000079739 PGM1 -612571 sc-eQTL 3.45e-02 0.344 0.162 0.934 CD8_CTL L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.85e-01 -0.0705 0.174 0.934 CD8_CTL L2
ENSG00000116641 DOCK7 292454 sc-eQTL 5.97e-01 -0.0873 0.165 0.934 CD8_CTL L2
ENSG00000125703 ATG4C 196708 sc-eQTL 6.29e-01 -0.0849 0.175 0.934 CD8_CTL L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.18e-01 0.225 0.182 0.934 CD8_CTL L2
ENSG00000162607 USP1 544543 sc-eQTL 9.29e-01 0.0146 0.163 0.934 CD8_CTL L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 2.18e-01 -0.23 0.186 0.934 CD8_CTL L2
ENSG00000079739 PGM1 -612571 sc-eQTL 1.29e-01 0.253 0.166 0.934 CD8_Naive L2
ENSG00000088035 ALG6 -386735 sc-eQTL 7.97e-01 0.0446 0.173 0.934 CD8_Naive L2
ENSG00000116641 DOCK7 292454 sc-eQTL 1.87e-01 -0.236 0.178 0.934 CD8_Naive L2
ENSG00000125703 ATG4C 196708 sc-eQTL 9.93e-01 0.00143 0.172 0.934 CD8_Naive L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.05e-01 0.0658 0.174 0.934 CD8_Naive L2
ENSG00000162607 USP1 544543 sc-eQTL 9.90e-01 -0.00178 0.147 0.934 CD8_Naive L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.51e-01 0.124 0.164 0.934 CD8_Naive L2
ENSG00000079739 PGM1 -612571 sc-eQTL 2.65e-01 0.203 0.181 0.933 CD8_TCM L2
ENSG00000088035 ALG6 -386735 sc-eQTL 2.98e-01 -0.192 0.184 0.933 CD8_TCM L2
ENSG00000116641 DOCK7 292454 sc-eQTL 4.30e-01 -0.142 0.18 0.933 CD8_TCM L2
ENSG00000125703 ATG4C 196708 sc-eQTL 6.04e-01 -0.0955 0.184 0.933 CD8_TCM L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 4.64e-01 -0.131 0.178 0.933 CD8_TCM L2
ENSG00000162607 USP1 544543 sc-eQTL 5.56e-01 0.101 0.172 0.933 CD8_TCM L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 7.10e-01 0.0679 0.182 0.933 CD8_TCM L2
ENSG00000079739 PGM1 -612571 sc-eQTL 2.49e-02 0.42 0.186 0.938 CD8_TEM L2
ENSG00000088035 ALG6 -386735 sc-eQTL 7.16e-01 0.0687 0.189 0.938 CD8_TEM L2
ENSG00000116641 DOCK7 292454 sc-eQTL 3.29e-02 -0.389 0.181 0.938 CD8_TEM L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.12e-01 -0.22 0.175 0.938 CD8_TEM L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.00e-01 -0.0735 0.19 0.938 CD8_TEM L2
ENSG00000162607 USP1 544543 sc-eQTL 6.10e-02 0.339 0.18 0.938 CD8_TEM L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 7.88e-01 -0.0496 0.185 0.938 CD8_TEM L2
ENSG00000079739 PGM1 -612571 sc-eQTL 1.97e-01 -0.229 0.177 0.937 MAIT L2
ENSG00000088035 ALG6 -386735 sc-eQTL 3.40e-01 0.168 0.175 0.937 MAIT L2
ENSG00000116641 DOCK7 292454 sc-eQTL 4.88e-01 -0.117 0.168 0.937 MAIT L2
ENSG00000125703 ATG4C 196708 sc-eQTL 8.67e-01 0.0297 0.177 0.937 MAIT L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.79e-01 -0.239 0.177 0.937 MAIT L2
ENSG00000162607 USP1 544543 sc-eQTL 8.26e-01 0.0388 0.176 0.937 MAIT L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 1.34e-01 0.274 0.182 0.937 MAIT L2
ENSG00000079739 PGM1 -612571 sc-eQTL 6.17e-01 0.0872 0.174 0.933 NK_CD56bright L2
ENSG00000088035 ALG6 -386735 sc-eQTL 5.10e-01 -0.118 0.178 0.933 NK_CD56bright L2
ENSG00000116641 DOCK7 292454 sc-eQTL 5.44e-01 -0.0939 0.154 0.933 NK_CD56bright L2
ENSG00000125703 ATG4C 196708 sc-eQTL 1.46e-01 -0.251 0.172 0.933 NK_CD56bright L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.82e-01 0.193 0.179 0.933 NK_CD56bright L2
ENSG00000162607 USP1 544543 sc-eQTL 1.78e-01 -0.25 0.185 0.933 NK_CD56bright L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.93e-01 0.122 0.177 0.933 NK_CD56bright L2
ENSG00000079739 PGM1 -612571 sc-eQTL 9.59e-01 0.00723 0.141 0.933 NK_CD56dim L2
ENSG00000088035 ALG6 -386735 sc-eQTL 5.67e-01 0.102 0.178 0.933 NK_CD56dim L2
ENSG00000116641 DOCK7 292454 sc-eQTL 8.01e-01 -0.0392 0.155 0.933 NK_CD56dim L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.41e-01 0.185 0.157 0.933 NK_CD56dim L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 6.75e-02 -0.327 0.178 0.933 NK_CD56dim L2
ENSG00000162607 USP1 544543 sc-eQTL 1.37e-01 -0.258 0.173 0.933 NK_CD56dim L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 9.58e-01 -0.0103 0.194 0.933 NK_CD56dim L2
ENSG00000079739 PGM1 -612571 sc-eQTL 4.10e-01 -0.155 0.187 0.934 NK_HLA L2
ENSG00000088035 ALG6 -386735 sc-eQTL 3.77e-01 -0.172 0.194 0.934 NK_HLA L2
ENSG00000116641 DOCK7 292454 sc-eQTL 3.97e-01 0.126 0.149 0.934 NK_HLA L2
ENSG00000125703 ATG4C 196708 sc-eQTL 4.47e-01 -0.132 0.173 0.934 NK_HLA L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.96e-02 0.308 0.18 0.934 NK_HLA L2
ENSG00000162607 USP1 544543 sc-eQTL 3.50e-01 -0.178 0.19 0.934 NK_HLA L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.22e-01 -0.139 0.173 0.934 NK_HLA L2
ENSG00000079739 PGM1 -612571 sc-eQTL 4.95e-01 -0.105 0.153 0.933 NK_cytokine L2
ENSG00000088035 ALG6 -386735 sc-eQTL 9.64e-01 -0.00792 0.174 0.933 NK_cytokine L2
ENSG00000116641 DOCK7 292454 sc-eQTL 1.06e-01 -0.259 0.16 0.933 NK_cytokine L2
ENSG00000125703 ATG4C 196708 sc-eQTL 9.66e-01 0.0071 0.164 0.933 NK_cytokine L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.66e-01 -0.0508 0.17 0.933 NK_cytokine L2
ENSG00000162607 USP1 544543 sc-eQTL 2.38e-02 0.403 0.177 0.933 NK_cytokine L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 2.55e-01 0.207 0.181 0.933 NK_cytokine L2
ENSG00000079739 PGM1 -612571 sc-eQTL 7.87e-01 -0.0595 0.22 0.933 PB L2
ENSG00000088035 ALG6 -386735 sc-eQTL 5.08e-01 -0.153 0.231 0.933 PB L2
ENSG00000116641 DOCK7 292454 sc-eQTL 4.14e-01 0.202 0.246 0.933 PB L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.26e-01 0.26 0.214 0.933 PB L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.26e-01 0.328 0.213 0.933 PB L2
ENSG00000162607 USP1 544543 sc-eQTL 3.88e-01 -0.185 0.213 0.933 PB L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 1.91e-02 -0.548 0.23 0.933 PB L2
ENSG00000079739 PGM1 -612571 sc-eQTL 5.96e-02 -0.308 0.163 0.933 Pro_T L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.98e-01 0.0649 0.167 0.933 Pro_T L2
ENSG00000116641 DOCK7 292454 sc-eQTL 9.92e-01 0.00176 0.168 0.933 Pro_T L2
ENSG00000125703 ATG4C 196708 sc-eQTL 1.34e-01 0.219 0.146 0.933 Pro_T L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 5.04e-01 -0.0984 0.147 0.933 Pro_T L2
ENSG00000162607 USP1 544543 sc-eQTL 9.54e-01 0.00581 0.101 0.933 Pro_T L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 3.80e-02 -0.353 0.169 0.933 Pro_T L2
ENSG00000079739 PGM1 -612571 sc-eQTL 6.15e-01 -0.0887 0.176 0.934 Treg L2
ENSG00000088035 ALG6 -386735 sc-eQTL 8.66e-01 0.0318 0.188 0.934 Treg L2
ENSG00000116641 DOCK7 292454 sc-eQTL 4.00e-02 -0.354 0.171 0.934 Treg L2
ENSG00000125703 ATG4C 196708 sc-eQTL 9.52e-01 0.0106 0.177 0.934 Treg L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.37e-01 -0.038 0.185 0.934 Treg L2
ENSG00000162607 USP1 544543 sc-eQTL 6.07e-01 -0.0922 0.179 0.934 Treg L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 9.14e-01 0.0191 0.177 0.934 Treg L2
ENSG00000079739 PGM1 -612571 sc-eQTL 9.86e-01 -0.00319 0.178 0.932 cDC L2
ENSG00000088035 ALG6 -386735 sc-eQTL 8.08e-01 -0.0439 0.18 0.932 cDC L2
ENSG00000116641 DOCK7 292454 sc-eQTL 8.47e-01 0.0342 0.177 0.932 cDC L2
ENSG00000125703 ATG4C 196708 sc-eQTL 1.94e-01 0.2 0.153 0.932 cDC L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.47e-01 -0.0376 0.195 0.932 cDC L2
ENSG00000162607 USP1 544543 sc-eQTL 6.25e-01 0.0848 0.173 0.932 cDC L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 8.05e-01 0.0386 0.156 0.932 cDC L2
ENSG00000079739 PGM1 -612571 sc-eQTL 2.35e-01 -0.197 0.165 0.934 cMono_IL1B L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.50e-01 0.0755 0.166 0.934 cMono_IL1B L2
ENSG00000116641 DOCK7 292454 sc-eQTL 5.48e-01 0.105 0.175 0.934 cMono_IL1B L2
ENSG00000125703 ATG4C 196708 sc-eQTL 3.38e-01 0.118 0.123 0.934 cMono_IL1B L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.48e-01 0.0334 0.174 0.934 cMono_IL1B L2
ENSG00000162607 USP1 544543 sc-eQTL 7.56e-01 -0.0479 0.154 0.934 cMono_IL1B L2
ENSG00000240563 L1TD1 785991 sc-eQTL 6.46e-02 0.285 0.153 0.934 cMono_IL1B L2
ENSG00000079739 PGM1 -612571 sc-eQTL 8.98e-01 0.0237 0.185 0.934 cMono_S100A L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.44e-01 -0.0866 0.187 0.934 cMono_S100A L2
ENSG00000116641 DOCK7 292454 sc-eQTL 6.47e-01 -0.0795 0.174 0.934 cMono_S100A L2
ENSG00000125703 ATG4C 196708 sc-eQTL 2.28e-01 0.181 0.15 0.934 cMono_S100A L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 6.50e-02 0.312 0.168 0.934 cMono_S100A L2
ENSG00000162607 USP1 544543 sc-eQTL 8.22e-01 0.0394 0.175 0.934 cMono_S100A L2
ENSG00000240563 L1TD1 785991 sc-eQTL 6.23e-02 0.27 0.144 0.934 cMono_S100A L2
ENSG00000079739 PGM1 -612571 sc-eQTL 4.69e-01 0.139 0.191 0.93 gdT L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.14e-01 -0.103 0.204 0.93 gdT L2
ENSG00000116641 DOCK7 292454 sc-eQTL 6.50e-02 -0.367 0.197 0.93 gdT L2
ENSG00000125703 ATG4C 196708 sc-eQTL 4.91e-01 0.131 0.191 0.93 gdT L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.72e-01 0.276 0.201 0.93 gdT L2
ENSG00000162607 USP1 544543 sc-eQTL 7.76e-01 0.0546 0.192 0.93 gdT L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.54e-01 0.15 0.199 0.93 gdT L2
ENSG00000079739 PGM1 -612571 sc-eQTL 5.55e-01 -0.112 0.19 0.933 intMono L2
ENSG00000088035 ALG6 -386735 sc-eQTL 7.10e-01 -0.0659 0.177 0.933 intMono L2
ENSG00000116641 DOCK7 292454 sc-eQTL 3.94e-01 0.154 0.18 0.933 intMono L2
ENSG00000125703 ATG4C 196708 sc-eQTL 5.76e-01 -0.0965 0.172 0.933 intMono L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 5.25e-01 0.121 0.19 0.933 intMono L2
ENSG00000162607 USP1 544543 sc-eQTL 3.52e-01 -0.18 0.193 0.933 intMono L2
ENSG00000240563 L1TD1 785991 sc-eQTL 8.64e-01 -0.0243 0.142 0.933 intMono L2
ENSG00000079739 PGM1 -612571 sc-eQTL 4.81e-01 -0.114 0.161 0.93 ncMono L2
ENSG00000088035 ALG6 -386735 sc-eQTL 3.26e-01 0.174 0.177 0.93 ncMono L2
ENSG00000116641 DOCK7 292454 sc-eQTL 6.00e-01 -0.0916 0.174 0.93 ncMono L2
ENSG00000125703 ATG4C 196708 sc-eQTL 5.51e-02 0.312 0.161 0.93 ncMono L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 7.12e-03 0.455 0.167 0.93 ncMono L2
ENSG00000162607 USP1 544543 sc-eQTL 7.33e-01 0.0596 0.174 0.93 ncMono L2
ENSG00000240563 L1TD1 785991 sc-eQTL 1.08e-01 0.198 0.123 0.93 ncMono L2
ENSG00000079739 PGM1 -612571 sc-eQTL 7.76e-01 0.0564 0.198 0.935 pDC L2
ENSG00000088035 ALG6 -386735 sc-eQTL 6.18e-01 -0.096 0.192 0.935 pDC L2
ENSG00000116641 DOCK7 292454 sc-eQTL 1.40e-02 0.479 0.193 0.935 pDC L2
ENSG00000125703 ATG4C 196708 sc-eQTL 7.29e-01 -0.0612 0.176 0.935 pDC L2
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.43e-01 0.231 0.197 0.935 pDC L2
ENSG00000162607 USP1 544543 sc-eQTL 6.70e-01 0.0861 0.202 0.935 pDC L2
ENSG00000203965 EFCAB7 -542532 sc-eQTL 6.31e-01 -0.0843 0.175 0.935 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -612571 sc-eQTL 9.59e-01 -0.00868 0.17 0.934 B_Memory LOneK1K
ENSG00000088035 ALG6 -386735 sc-eQTL 8.21e-01 -0.0428 0.188 0.934 B_Memory LOneK1K
ENSG00000116641 DOCK7 292454 sc-eQTL 6.41e-01 -0.0763 0.163 0.934 B_Memory LOneK1K
ENSG00000125703 ATG4C 196708 sc-eQTL 8.84e-01 0.0192 0.132 0.934 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -612881 sc-eQTL 8.05e-01 -0.043 0.174 0.934 B_Memory LOneK1K
ENSG00000162607 USP1 544543 sc-eQTL 1.91e-01 0.22 0.168 0.934 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -542532 sc-eQTL 3.00e-02 0.391 0.179 0.934 B_Memory LOneK1K
ENSG00000079739 PGM1 -612571 sc-eQTL 7.76e-01 -0.0512 0.18 0.934 B_Naive LOneK1K
ENSG00000088035 ALG6 -386735 sc-eQTL 1.93e-01 0.241 0.184 0.934 B_Naive LOneK1K
ENSG00000116641 DOCK7 292454 sc-eQTL 5.57e-01 -0.102 0.173 0.934 B_Naive LOneK1K
ENSG00000125703 ATG4C 196708 sc-eQTL 7.88e-01 0.0355 0.132 0.934 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -612881 sc-eQTL 1.73e-01 0.254 0.186 0.934 B_Naive LOneK1K
ENSG00000162607 USP1 544543 sc-eQTL 8.00e-01 -0.0407 0.16 0.934 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -542532 sc-eQTL 6.15e-01 -0.0944 0.187 0.934 B_Naive LOneK1K
ENSG00000079739 PGM1 -612571 sc-eQTL 2.36e-01 -0.202 0.17 0.934 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -386735 sc-eQTL 9.88e-01 -0.00243 0.166 0.934 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 292454 sc-eQTL 4.77e-01 0.119 0.167 0.934 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 196708 sc-eQTL 2.93e-01 0.121 0.115 0.934 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.63e-01 0.191 0.17 0.934 CD14_Mono LOneK1K
ENSG00000162607 USP1 544543 sc-eQTL 8.99e-01 0.0186 0.146 0.934 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 785991 sc-eQTL 6.83e-03 0.424 0.155 0.934 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -612571 sc-eQTL 4.99e-01 -0.107 0.158 0.933 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -386735 sc-eQTL 4.15e-01 0.147 0.179 0.933 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 292454 sc-eQTL 8.81e-01 0.0266 0.178 0.933 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 196708 sc-eQTL 5.07e-01 0.101 0.151 0.933 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -612881 sc-eQTL 3.07e-02 0.379 0.174 0.933 CD16_Mono LOneK1K
ENSG00000162607 USP1 544543 sc-eQTL 9.14e-01 -0.0178 0.165 0.933 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 785991 sc-eQTL 2.29e-01 0.136 0.112 0.933 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -612571 sc-eQTL 7.53e-01 -0.0434 0.138 0.933 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -386735 sc-eQTL 9.64e-01 0.00751 0.165 0.933 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 292454 sc-eQTL 6.63e-01 -0.0646 0.148 0.933 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 196708 sc-eQTL 5.87e-01 0.0804 0.148 0.933 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -612881 sc-eQTL 2.19e-01 -0.215 0.174 0.933 NK_CD56dim LOneK1K
ENSG00000162607 USP1 544543 sc-eQTL 6.83e-01 -0.0649 0.159 0.933 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -542532 sc-eQTL 4.81e-01 0.136 0.193 0.933 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -612571 eQTL 0.0823 -0.059 0.0339 0.00125 0.0 0.0736
ENSG00000162607 USP1 544543 eQTL 0.0213 -0.0563 0.0244 0.0 0.0 0.0736
ENSG00000230798 FOXD3-AS1 -343601 eQTL 0.00402 -0.142 0.0493 0.00171 0.00208 0.0736

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 \N 292472 1.3e-06 1.22e-06 2.19e-07 1.27e-06 4.25e-07 6.3e-07 1.48e-06 4.27e-07 1.7e-06 6.77e-07 2.08e-06 9.26e-07 2.51e-06 3.1e-07 4.76e-07 1.04e-06 1.01e-06 1.05e-06 5.81e-07 4.61e-07 7.61e-07 1.89e-06 1.11e-06 5.76e-07 2.41e-06 7.75e-07 1e-06 8.36e-07 1.62e-06 1.3e-06 8.51e-07 2.63e-07 3.47e-07 5.4e-07 6.01e-07 5.24e-07 7.1e-07 3.6e-07 5.07e-07 2.04e-07 3.56e-07 1.67e-06 3.32e-07 1.57e-07 3.43e-07 2.03e-07 2.79e-07 1.96e-07 3e-07
ENSG00000230798 FOXD3-AS1 -343601 1.26e-06 9.82e-07 2.65e-07 7.82e-07 3.5e-07 5.15e-07 1.38e-06 3.82e-07 1.41e-06 4.7e-07 1.57e-06 6.58e-07 1.98e-06 2.67e-07 5.17e-07 9.17e-07 8.19e-07 6.56e-07 8.21e-07 6.49e-07 6.61e-07 1.42e-06 8.96e-07 6.4e-07 2.09e-06 4.39e-07 8.98e-07 7.14e-07 1.28e-06 1.29e-06 6.18e-07 1.91e-07 2.62e-07 7.03e-07 6.24e-07 4.37e-07 5.04e-07 2.38e-07 3.76e-07 2.94e-07 2.72e-07 1.49e-06 9.66e-08 9.61e-08 2.16e-07 1.26e-07 2.17e-07 4.82e-08 1.91e-07