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Genes within 1Mb (chr1:62979682:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -613729 sc-eQTL 9.63e-01 0.00347 0.0745 0.496 B L1
ENSG00000088035 ALG6 -387893 sc-eQTL 7.82e-02 -0.136 0.0767 0.496 B L1
ENSG00000116641 DOCK7 291296 sc-eQTL 2.52e-01 0.0885 0.077 0.496 B L1
ENSG00000125703 ATG4C 195550 sc-eQTL 7.22e-01 -0.0191 0.0537 0.496 B L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 8.67e-01 0.0143 0.0854 0.496 B L1
ENSG00000162607 USP1 543385 sc-eQTL 5.92e-02 -0.139 0.0735 0.496 B L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 8.98e-01 -0.0112 0.0875 0.496 B L1
ENSG00000079739 PGM1 -613729 sc-eQTL 1.45e-01 0.0948 0.0648 0.496 CD4T L1
ENSG00000088035 ALG6 -387893 sc-eQTL 8.72e-01 0.0116 0.0718 0.496 CD4T L1
ENSG00000116641 DOCK7 291296 sc-eQTL 7.45e-01 -0.0237 0.0727 0.496 CD4T L1
ENSG00000125703 ATG4C 195550 sc-eQTL 9.50e-01 0.00369 0.0587 0.496 CD4T L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 6.50e-01 0.0378 0.0833 0.496 CD4T L1
ENSG00000162607 USP1 543385 sc-eQTL 7.02e-01 0.0218 0.057 0.496 CD4T L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.24e-01 0.0598 0.0747 0.496 CD4T L1
ENSG00000079739 PGM1 -613729 sc-eQTL 2.78e-01 -0.0791 0.0727 0.496 CD8T L1
ENSG00000088035 ALG6 -387893 sc-eQTL 9.11e-01 0.00899 0.0804 0.496 CD8T L1
ENSG00000116641 DOCK7 291296 sc-eQTL 2.93e-01 0.0856 0.0812 0.496 CD8T L1
ENSG00000125703 ATG4C 195550 sc-eQTL 6.91e-01 0.0308 0.0773 0.496 CD8T L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.24e-01 0.105 0.0862 0.496 CD8T L1
ENSG00000162607 USP1 543385 sc-eQTL 4.67e-02 0.134 0.0668 0.496 CD8T L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 3.74e-02 -0.179 0.0854 0.496 CD8T L1
ENSG00000079739 PGM1 -613729 sc-eQTL 4.13e-01 0.0637 0.0777 0.495 DC L1
ENSG00000088035 ALG6 -387893 sc-eQTL 6.09e-01 -0.0411 0.0802 0.495 DC L1
ENSG00000116641 DOCK7 291296 sc-eQTL 1.66e-03 0.256 0.0803 0.495 DC L1
ENSG00000125703 ATG4C 195550 sc-eQTL 2.85e-01 0.0688 0.0642 0.495 DC L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 1.93e-01 0.117 0.0896 0.495 DC L1
ENSG00000162607 USP1 543385 sc-eQTL 7.10e-01 0.0292 0.0786 0.495 DC L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 7.91e-02 0.137 0.0777 0.495 DC L1
ENSG00000079739 PGM1 -613729 sc-eQTL 5.69e-01 0.0446 0.0783 0.496 Mono L1
ENSG00000088035 ALG6 -387893 sc-eQTL 3.45e-01 -0.0773 0.0816 0.496 Mono L1
ENSG00000116641 DOCK7 291296 sc-eQTL 3.10e-01 0.0803 0.0789 0.496 Mono L1
ENSG00000125703 ATG4C 195550 sc-eQTL 5.97e-01 -0.0283 0.0534 0.496 Mono L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.92e-01 -0.0223 0.0845 0.496 Mono L1
ENSG00000162607 USP1 543385 sc-eQTL 2.01e-01 -0.0887 0.0691 0.496 Mono L1
ENSG00000240563 L1TD1 784833 sc-eQTL 7.20e-01 -0.0233 0.0647 0.496 Mono L1
ENSG00000079739 PGM1 -613729 sc-eQTL 2.49e-01 -0.0763 0.0661 0.496 NK L1
ENSG00000088035 ALG6 -387893 sc-eQTL 1.07e-01 0.125 0.0772 0.496 NK L1
ENSG00000116641 DOCK7 291296 sc-eQTL 7.43e-01 0.021 0.064 0.496 NK L1
ENSG00000125703 ATG4C 195550 sc-eQTL 4.63e-01 0.0504 0.0686 0.496 NK L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 9.29e-01 0.00764 0.0854 0.496 NK L1
ENSG00000162607 USP1 543385 sc-eQTL 2.39e-02 -0.172 0.0754 0.496 NK L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 9.02e-01 -0.0114 0.0927 0.496 NK L1
ENSG00000079739 PGM1 -613729 sc-eQTL 1.74e-01 -0.1 0.0734 0.496 Other_T L1
ENSG00000088035 ALG6 -387893 sc-eQTL 6.48e-01 0.0338 0.0741 0.496 Other_T L1
ENSG00000116641 DOCK7 291296 sc-eQTL 9.67e-01 -0.00315 0.0757 0.496 Other_T L1
ENSG00000125703 ATG4C 195550 sc-eQTL 4.16e-01 0.0533 0.0654 0.496 Other_T L1
ENSG00000142856 ITGB3BP -614039 sc-eQTL 8.86e-02 0.0987 0.0577 0.496 Other_T L1
ENSG00000162607 USP1 543385 sc-eQTL 8.78e-01 -0.00775 0.0503 0.496 Other_T L1
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.06e-02 -0.183 0.0887 0.496 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -613729 sc-eQTL 5.21e-01 0.067 0.104 0.48 B_Activated L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.59e-01 -0.141 0.0994 0.48 B_Activated L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.21e-01 0.0461 0.093 0.48 B_Activated L2
ENSG00000125703 ATG4C 195550 sc-eQTL 3.85e-01 0.0851 0.0977 0.48 B_Activated L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.38e-01 0.113 0.0953 0.48 B_Activated L2
ENSG00000162607 USP1 543385 sc-eQTL 6.57e-01 0.0461 0.104 0.48 B_Activated L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.95e-01 -0.0619 0.0905 0.48 B_Activated L2
ENSG00000079739 PGM1 -613729 sc-eQTL 2.75e-01 0.0977 0.0893 0.496 B_Intermediate L2
ENSG00000088035 ALG6 -387893 sc-eQTL 7.77e-01 0.0257 0.0909 0.496 B_Intermediate L2
ENSG00000116641 DOCK7 291296 sc-eQTL 5.92e-01 0.0466 0.0868 0.496 B_Intermediate L2
ENSG00000125703 ATG4C 195550 sc-eQTL 9.83e-01 0.00153 0.0735 0.496 B_Intermediate L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.24e-01 -0.106 0.0873 0.496 B_Intermediate L2
ENSG00000162607 USP1 543385 sc-eQTL 6.90e-01 -0.035 0.0874 0.496 B_Intermediate L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 9.03e-01 0.0106 0.0867 0.496 B_Intermediate L2
ENSG00000079739 PGM1 -613729 sc-eQTL 8.65e-01 -0.0148 0.087 0.498 B_Memory L2
ENSG00000088035 ALG6 -387893 sc-eQTL 3.67e-01 -0.0799 0.0883 0.498 B_Memory L2
ENSG00000116641 DOCK7 291296 sc-eQTL 5.04e-01 -0.0555 0.0829 0.498 B_Memory L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.02e-01 0.0412 0.0788 0.498 B_Memory L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 5.03e-01 -0.0605 0.0901 0.498 B_Memory L2
ENSG00000162607 USP1 543385 sc-eQTL 1.11e-01 -0.145 0.0905 0.498 B_Memory L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 1.38e-01 0.133 0.0891 0.498 B_Memory L2
ENSG00000079739 PGM1 -613729 sc-eQTL 6.57e-01 -0.0399 0.0897 0.496 B_Naive1 L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.32e-01 -0.136 0.0896 0.496 B_Naive1 L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.07e-01 0.0444 0.0863 0.496 B_Naive1 L2
ENSG00000125703 ATG4C 195550 sc-eQTL 7.40e-01 -0.0221 0.0665 0.496 B_Naive1 L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.24e-01 0.0312 0.0882 0.496 B_Naive1 L2
ENSG00000162607 USP1 543385 sc-eQTL 4.96e-01 -0.0528 0.0775 0.496 B_Naive1 L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 8.44e-01 -0.0186 0.0941 0.496 B_Naive1 L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.76e-01 0.0629 0.088 0.498 B_Naive2 L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.14e-01 -0.145 0.0913 0.498 B_Naive2 L2
ENSG00000116641 DOCK7 291296 sc-eQTL 8.57e-01 -0.0159 0.0883 0.498 B_Naive2 L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.66e-01 -0.0367 0.085 0.498 B_Naive2 L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 5.01e-01 0.0621 0.0921 0.498 B_Naive2 L2
ENSG00000162607 USP1 543385 sc-eQTL 4.87e-01 0.061 0.0877 0.498 B_Naive2 L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 3.74e-01 -0.0816 0.0916 0.498 B_Naive2 L2
ENSG00000079739 PGM1 -613729 sc-eQTL 6.97e-01 -0.0352 0.0902 0.507 CD4_CTL L2
ENSG00000088035 ALG6 -387893 sc-eQTL 4.20e-02 0.193 0.0944 0.507 CD4_CTL L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.73e-01 -0.0353 0.0834 0.507 CD4_CTL L2
ENSG00000125703 ATG4C 195550 sc-eQTL 9.95e-01 0.000573 0.0863 0.507 CD4_CTL L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 1.58e-01 0.13 0.0918 0.507 CD4_CTL L2
ENSG00000162607 USP1 543385 sc-eQTL 2.12e-01 0.11 0.0875 0.507 CD4_CTL L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 3.25e-01 0.0863 0.0875 0.507 CD4_CTL L2
ENSG00000079739 PGM1 -613729 sc-eQTL 1.28e-01 0.111 0.0728 0.496 CD4_Naive L2
ENSG00000088035 ALG6 -387893 sc-eQTL 6.96e-01 -0.0311 0.0795 0.496 CD4_Naive L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.58e-01 -0.0346 0.0781 0.496 CD4_Naive L2
ENSG00000125703 ATG4C 195550 sc-eQTL 8.24e-01 -0.0153 0.0691 0.496 CD4_Naive L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.26e-01 0.0296 0.0844 0.496 CD4_Naive L2
ENSG00000162607 USP1 543385 sc-eQTL 7.62e-01 0.0196 0.0645 0.496 CD4_Naive L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 3.34e-01 0.0811 0.0837 0.496 CD4_Naive L2
ENSG00000079739 PGM1 -613729 sc-eQTL 5.73e-01 0.0429 0.076 0.496 CD4_TCM L2
ENSG00000088035 ALG6 -387893 sc-eQTL 3.83e-01 -0.077 0.0881 0.496 CD4_TCM L2
ENSG00000116641 DOCK7 291296 sc-eQTL 8.17e-01 -0.0181 0.0782 0.496 CD4_TCM L2
ENSG00000125703 ATG4C 195550 sc-eQTL 2.45e-01 0.0886 0.0759 0.496 CD4_TCM L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 8.80e-01 -0.0136 0.0898 0.496 CD4_TCM L2
ENSG00000162607 USP1 543385 sc-eQTL 4.74e-01 0.0528 0.0735 0.496 CD4_TCM L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 9.48e-01 0.0057 0.0869 0.496 CD4_TCM L2
ENSG00000079739 PGM1 -613729 sc-eQTL 6.13e-01 0.0451 0.0892 0.496 CD4_TEM L2
ENSG00000088035 ALG6 -387893 sc-eQTL 7.45e-01 0.0292 0.0897 0.496 CD4_TEM L2
ENSG00000116641 DOCK7 291296 sc-eQTL 3.39e-01 -0.0836 0.0873 0.496 CD4_TEM L2
ENSG00000125703 ATG4C 195550 sc-eQTL 1.81e-01 0.114 0.0846 0.496 CD4_TEM L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.04e-01 0.0334 0.0876 0.496 CD4_TEM L2
ENSG00000162607 USP1 543385 sc-eQTL 4.27e-01 0.066 0.0829 0.496 CD4_TEM L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 9.42e-01 0.00667 0.0908 0.496 CD4_TEM L2
ENSG00000079739 PGM1 -613729 sc-eQTL 6.31e-01 -0.0392 0.0816 0.496 CD8_CTL L2
ENSG00000088035 ALG6 -387893 sc-eQTL 2.19e-01 0.107 0.0865 0.496 CD8_CTL L2
ENSG00000116641 DOCK7 291296 sc-eQTL 5.49e-01 0.0494 0.0823 0.496 CD8_CTL L2
ENSG00000125703 ATG4C 195550 sc-eQTL 8.94e-01 0.0117 0.0877 0.496 CD8_CTL L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.26e-01 0.0896 0.091 0.496 CD8_CTL L2
ENSG00000162607 USP1 543385 sc-eQTL 9.37e-02 0.137 0.0811 0.496 CD8_CTL L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.53e-02 -0.186 0.0925 0.496 CD8_CTL L2
ENSG00000079739 PGM1 -613729 sc-eQTL 7.51e-01 0.0263 0.0829 0.496 CD8_Naive L2
ENSG00000088035 ALG6 -387893 sc-eQTL 5.35e-01 -0.0533 0.0857 0.496 CD8_Naive L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.11e-01 0.141 0.0882 0.496 CD8_Naive L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.60e-01 -0.0375 0.0851 0.496 CD8_Naive L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.32e-01 0.0837 0.0861 0.496 CD8_Naive L2
ENSG00000162607 USP1 543385 sc-eQTL 2.84e-01 0.0782 0.0727 0.496 CD8_Naive L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 1.98e-01 -0.105 0.081 0.496 CD8_Naive L2
ENSG00000079739 PGM1 -613729 sc-eQTL 9.68e-01 0.00363 0.0918 0.512 CD8_TCM L2
ENSG00000088035 ALG6 -387893 sc-eQTL 9.44e-01 0.00651 0.0929 0.512 CD8_TCM L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.30e-01 0.0437 0.0906 0.512 CD8_TCM L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.40e-01 0.0434 0.0927 0.512 CD8_TCM L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 9.61e-01 -0.00442 0.0901 0.512 CD8_TCM L2
ENSG00000162607 USP1 543385 sc-eQTL 4.50e-01 -0.0655 0.0866 0.512 CD8_TCM L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 5.18e-01 -0.0594 0.0917 0.512 CD8_TCM L2
ENSG00000079739 PGM1 -613729 sc-eQTL 6.52e-01 0.0412 0.0912 0.502 CD8_TEM L2
ENSG00000088035 ALG6 -387893 sc-eQTL 8.58e-01 -0.0164 0.0916 0.502 CD8_TEM L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.96e-01 0.115 0.0884 0.502 CD8_TEM L2
ENSG00000125703 ATG4C 195550 sc-eQTL 5.01e-01 0.0575 0.0853 0.502 CD8_TEM L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 4.64e-01 -0.0678 0.0923 0.502 CD8_TEM L2
ENSG00000162607 USP1 543385 sc-eQTL 2.27e-01 0.106 0.0879 0.502 CD8_TEM L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.24e-01 -0.0716 0.0895 0.502 CD8_TEM L2
ENSG00000079739 PGM1 -613729 sc-eQTL 8.12e-01 -0.0207 0.0868 0.496 MAIT L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.74e-01 0.117 0.0856 0.496 MAIT L2
ENSG00000116641 DOCK7 291296 sc-eQTL 5.32e-01 0.0515 0.0823 0.496 MAIT L2
ENSG00000125703 ATG4C 195550 sc-eQTL 8.75e-01 0.0136 0.0869 0.496 MAIT L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.86e-02 0.19 0.086 0.496 MAIT L2
ENSG00000162607 USP1 543385 sc-eQTL 9.42e-01 -0.00633 0.0863 0.496 MAIT L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 9.31e-01 -0.00772 0.0896 0.496 MAIT L2
ENSG00000079739 PGM1 -613729 sc-eQTL 8.56e-01 -0.0157 0.0865 0.498 NK_CD56bright L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.83e-01 0.118 0.0883 0.498 NK_CD56bright L2
ENSG00000116641 DOCK7 291296 sc-eQTL 7.19e-01 -0.0277 0.0768 0.498 NK_CD56bright L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.57e-01 -0.0381 0.0858 0.498 NK_CD56bright L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.13e-02 -0.205 0.0882 0.498 NK_CD56bright L2
ENSG00000162607 USP1 543385 sc-eQTL 3.20e-01 -0.0916 0.092 0.498 NK_CD56bright L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 6.32e-01 -0.0422 0.0881 0.498 NK_CD56bright L2
ENSG00000079739 PGM1 -613729 sc-eQTL 2.21e-01 -0.0837 0.0682 0.496 NK_CD56dim L2
ENSG00000088035 ALG6 -387893 sc-eQTL 5.85e-01 0.0475 0.0867 0.496 NK_CD56dim L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.60e-01 0.106 0.0752 0.496 NK_CD56dim L2
ENSG00000125703 ATG4C 195550 sc-eQTL 1.21e-01 0.119 0.0763 0.496 NK_CD56dim L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.38e-01 0.0836 0.0871 0.496 NK_CD56dim L2
ENSG00000162607 USP1 543385 sc-eQTL 4.68e-02 -0.168 0.0839 0.496 NK_CD56dim L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 8.74e-01 -0.0149 0.0943 0.496 NK_CD56dim L2
ENSG00000079739 PGM1 -613729 sc-eQTL 5.40e-02 -0.176 0.091 0.502 NK_HLA L2
ENSG00000088035 ALG6 -387893 sc-eQTL 6.78e-01 0.0397 0.0952 0.502 NK_HLA L2
ENSG00000116641 DOCK7 291296 sc-eQTL 2.84e-01 0.0781 0.0726 0.502 NK_HLA L2
ENSG00000125703 ATG4C 195550 sc-eQTL 1.95e-01 -0.11 0.0844 0.502 NK_HLA L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 1.35e-01 0.133 0.0885 0.502 NK_HLA L2
ENSG00000162607 USP1 543385 sc-eQTL 2.29e-02 -0.211 0.0919 0.502 NK_HLA L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 1.85e-01 -0.112 0.0844 0.502 NK_HLA L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.63e-01 -0.0551 0.0749 0.496 NK_cytokine L2
ENSG00000088035 ALG6 -387893 sc-eQTL 6.43e-01 0.0393 0.0847 0.496 NK_cytokine L2
ENSG00000116641 DOCK7 291296 sc-eQTL 2.81e-01 -0.0847 0.0783 0.496 NK_cytokine L2
ENSG00000125703 ATG4C 195550 sc-eQTL 7.33e-01 -0.0275 0.0803 0.496 NK_cytokine L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 8.70e-01 0.0136 0.0832 0.496 NK_cytokine L2
ENSG00000162607 USP1 543385 sc-eQTL 8.12e-01 0.0208 0.0874 0.496 NK_cytokine L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 1.08e-01 0.142 0.0881 0.496 NK_cytokine L2
ENSG00000079739 PGM1 -613729 sc-eQTL 8.65e-01 -0.0186 0.109 0.463 PB L2
ENSG00000088035 ALG6 -387893 sc-eQTL 5.22e-01 0.0737 0.115 0.463 PB L2
ENSG00000116641 DOCK7 291296 sc-eQTL 6.93e-01 0.0486 0.123 0.463 PB L2
ENSG00000125703 ATG4C 195550 sc-eQTL 6.92e-01 0.0425 0.107 0.463 PB L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.77e-01 0.0303 0.107 0.463 PB L2
ENSG00000162607 USP1 543385 sc-eQTL 2.99e-02 -0.229 0.104 0.463 PB L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 8.77e-01 -0.0183 0.117 0.463 PB L2
ENSG00000079739 PGM1 -613729 sc-eQTL 1.26e-01 -0.124 0.0806 0.498 Pro_T L2
ENSG00000088035 ALG6 -387893 sc-eQTL 1.50e-01 0.118 0.082 0.498 Pro_T L2
ENSG00000116641 DOCK7 291296 sc-eQTL 4.54e-01 0.062 0.0826 0.498 Pro_T L2
ENSG00000125703 ATG4C 195550 sc-eQTL 5.38e-01 0.0446 0.0723 0.498 Pro_T L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 9.61e-01 -0.00355 0.0726 0.498 Pro_T L2
ENSG00000162607 USP1 543385 sc-eQTL 4.10e-01 0.0411 0.0498 0.498 Pro_T L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.48e-03 -0.238 0.0827 0.498 Pro_T L2
ENSG00000079739 PGM1 -613729 sc-eQTL 3.87e-01 0.075 0.0866 0.496 Treg L2
ENSG00000088035 ALG6 -387893 sc-eQTL 9.33e-01 -0.00784 0.0928 0.496 Treg L2
ENSG00000116641 DOCK7 291296 sc-eQTL 8.00e-01 0.0216 0.0852 0.496 Treg L2
ENSG00000125703 ATG4C 195550 sc-eQTL 9.81e-01 -0.00209 0.087 0.496 Treg L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 5.45e-01 -0.0552 0.091 0.496 Treg L2
ENSG00000162607 USP1 543385 sc-eQTL 9.58e-01 -0.00462 0.0881 0.496 Treg L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 2.28e-01 -0.105 0.0868 0.496 Treg L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.32e-01 0.0675 0.0857 0.488 cDC L2
ENSG00000088035 ALG6 -387893 sc-eQTL 8.39e-01 -0.0178 0.0871 0.488 cDC L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.83e-02 0.2 0.0842 0.488 cDC L2
ENSG00000125703 ATG4C 195550 sc-eQTL 8.09e-01 0.0179 0.0742 0.488 cDC L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.39e-01 0.0899 0.0938 0.488 cDC L2
ENSG00000162607 USP1 543385 sc-eQTL 7.32e-01 0.0288 0.0837 0.488 cDC L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 5.58e-01 -0.0443 0.0755 0.488 cDC L2
ENSG00000079739 PGM1 -613729 sc-eQTL 2.69e-01 0.0899 0.0811 0.496 cMono_IL1B L2
ENSG00000088035 ALG6 -387893 sc-eQTL 2.82e-01 -0.0876 0.0812 0.496 cMono_IL1B L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.08e-01 0.138 0.0853 0.496 cMono_IL1B L2
ENSG00000125703 ATG4C 195550 sc-eQTL 1.86e-01 -0.0799 0.0601 0.496 cMono_IL1B L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 1.58e-01 -0.12 0.0851 0.496 cMono_IL1B L2
ENSG00000162607 USP1 543385 sc-eQTL 2.74e-01 -0.0826 0.0752 0.496 cMono_IL1B L2
ENSG00000240563 L1TD1 784833 sc-eQTL 5.36e-01 0.047 0.0757 0.496 cMono_IL1B L2
ENSG00000079739 PGM1 -613729 sc-eQTL 3.44e-01 0.0864 0.0911 0.496 cMono_S100A L2
ENSG00000088035 ALG6 -387893 sc-eQTL 2.27e-01 -0.112 0.0922 0.496 cMono_S100A L2
ENSG00000116641 DOCK7 291296 sc-eQTL 3.40e-01 -0.0819 0.0856 0.496 cMono_S100A L2
ENSG00000125703 ATG4C 195550 sc-eQTL 9.15e-01 0.00794 0.0743 0.496 cMono_S100A L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 7.54e-01 0.0263 0.0838 0.496 cMono_S100A L2
ENSG00000162607 USP1 543385 sc-eQTL 3.58e-01 -0.0793 0.0861 0.496 cMono_S100A L2
ENSG00000240563 L1TD1 784833 sc-eQTL 1.97e-01 -0.0924 0.0715 0.496 cMono_S100A L2
ENSG00000079739 PGM1 -613729 sc-eQTL 5.75e-01 0.0552 0.0983 0.506 gdT L2
ENSG00000088035 ALG6 -387893 sc-eQTL 3.92e-01 -0.0898 0.105 0.506 gdT L2
ENSG00000116641 DOCK7 291296 sc-eQTL 5.72e-01 -0.0583 0.103 0.506 gdT L2
ENSG00000125703 ATG4C 195550 sc-eQTL 5.64e-01 0.0568 0.0982 0.506 gdT L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.35e-01 0.101 0.104 0.506 gdT L2
ENSG00000162607 USP1 543385 sc-eQTL 4.52e-01 -0.0744 0.0986 0.506 gdT L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 7.24e-02 -0.184 0.102 0.506 gdT L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.92e-01 -0.0621 0.0902 0.496 intMono L2
ENSG00000088035 ALG6 -387893 sc-eQTL 5.55e-01 -0.0497 0.0841 0.496 intMono L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.45e-01 0.125 0.0855 0.496 intMono L2
ENSG00000125703 ATG4C 195550 sc-eQTL 5.00e-01 0.0554 0.0819 0.496 intMono L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 8.82e-01 -0.0134 0.0904 0.496 intMono L2
ENSG00000162607 USP1 543385 sc-eQTL 7.19e-01 -0.0331 0.0919 0.496 intMono L2
ENSG00000240563 L1TD1 784833 sc-eQTL 5.95e-01 -0.036 0.0676 0.496 intMono L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.83e-01 -0.0562 0.08 0.493 ncMono L2
ENSG00000088035 ALG6 -387893 sc-eQTL 7.08e-02 0.159 0.0873 0.493 ncMono L2
ENSG00000116641 DOCK7 291296 sc-eQTL 8.30e-01 -0.0186 0.0866 0.493 ncMono L2
ENSG00000125703 ATG4C 195550 sc-eQTL 4.26e-02 0.163 0.0801 0.493 ncMono L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 3.59e-01 0.0776 0.0844 0.493 ncMono L2
ENSG00000162607 USP1 543385 sc-eQTL 1.78e-02 -0.204 0.0852 0.493 ncMono L2
ENSG00000240563 L1TD1 784833 sc-eQTL 9.75e-01 -0.0019 0.0613 0.493 ncMono L2
ENSG00000079739 PGM1 -613729 sc-eQTL 4.90e-01 0.0676 0.0976 0.508 pDC L2
ENSG00000088035 ALG6 -387893 sc-eQTL 8.71e-01 -0.0155 0.0952 0.508 pDC L2
ENSG00000116641 DOCK7 291296 sc-eQTL 1.17e-01 0.152 0.0965 0.508 pDC L2
ENSG00000125703 ATG4C 195550 sc-eQTL 7.23e-01 -0.031 0.0872 0.508 pDC L2
ENSG00000142856 ITGB3BP -614039 sc-eQTL 4.03e-01 0.0819 0.0977 0.508 pDC L2
ENSG00000162607 USP1 543385 sc-eQTL 9.26e-01 -0.00929 0.0998 0.508 pDC L2
ENSG00000203965 EFCAB7 -543690 sc-eQTL 2.79e-01 0.0939 0.0864 0.508 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -613729 sc-eQTL 4.39e-01 0.0639 0.0825 0.496 B_Memory LOneK1K
ENSG00000088035 ALG6 -387893 sc-eQTL 4.56e-01 -0.0681 0.0912 0.496 B_Memory LOneK1K
ENSG00000116641 DOCK7 291296 sc-eQTL 8.92e-01 0.0108 0.0793 0.496 B_Memory LOneK1K
ENSG00000125703 ATG4C 195550 sc-eQTL 4.47e-01 0.0488 0.064 0.496 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.05e-01 -0.107 0.0839 0.496 B_Memory LOneK1K
ENSG00000162607 USP1 543385 sc-eQTL 9.93e-02 -0.135 0.0813 0.496 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.17e-01 0.0713 0.0876 0.496 B_Memory LOneK1K
ENSG00000079739 PGM1 -613729 sc-eQTL 9.47e-01 0.00585 0.0882 0.496 B_Naive LOneK1K
ENSG00000088035 ALG6 -387893 sc-eQTL 2.53e-02 -0.202 0.0898 0.496 B_Naive LOneK1K
ENSG00000116641 DOCK7 291296 sc-eQTL 6.07e-01 0.0437 0.0848 0.496 B_Naive LOneK1K
ENSG00000125703 ATG4C 195550 sc-eQTL 4.53e-01 -0.0486 0.0647 0.496 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -614039 sc-eQTL 2.84e-01 0.0981 0.0913 0.496 B_Naive LOneK1K
ENSG00000162607 USP1 543385 sc-eQTL 5.65e-01 -0.0453 0.0786 0.496 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -543690 sc-eQTL 4.85e-01 -0.0643 0.0919 0.496 B_Naive LOneK1K
ENSG00000079739 PGM1 -613729 sc-eQTL 3.20e-01 0.0833 0.0835 0.496 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -387893 sc-eQTL 1.68e-01 -0.112 0.0807 0.496 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 291296 sc-eQTL 3.18e-01 0.0815 0.0814 0.496 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 195550 sc-eQTL 3.48e-01 -0.053 0.0563 0.496 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -614039 sc-eQTL 5.09e-01 -0.0551 0.0834 0.496 CD14_Mono LOneK1K
ENSG00000162607 USP1 543385 sc-eQTL 3.03e-01 -0.0735 0.0711 0.496 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 784833 sc-eQTL 6.54e-01 0.0347 0.0773 0.496 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -613729 sc-eQTL 1.16e-01 -0.122 0.0774 0.496 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -387893 sc-eQTL 2.46e-01 0.103 0.0881 0.496 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 291296 sc-eQTL 3.30e-01 0.0852 0.0873 0.496 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 195550 sc-eQTL 2.16e-01 0.0922 0.0743 0.496 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -614039 sc-eQTL 6.35e-01 0.0411 0.0865 0.496 CD16_Mono LOneK1K
ENSG00000162607 USP1 543385 sc-eQTL 2.26e-01 -0.0983 0.0811 0.496 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 784833 sc-eQTL 7.69e-01 0.0163 0.0555 0.496 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -613729 sc-eQTL 2.78e-01 -0.0729 0.067 0.496 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -387893 sc-eQTL 4.20e-01 0.065 0.0805 0.496 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 291296 sc-eQTL 5.91e-01 0.0389 0.0722 0.496 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 195550 sc-eQTL 5.25e-01 0.0459 0.0721 0.496 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -614039 sc-eQTL 5.59e-01 0.05 0.0854 0.496 NK_CD56dim LOneK1K
ENSG00000162607 USP1 543385 sc-eQTL 2.54e-02 -0.173 0.0767 0.496 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -543690 sc-eQTL 6.71e-01 0.0401 0.0944 0.496 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -567400 4.68e-07 2.5e-07 7.45e-08 2.53e-07 1.05e-07 1.25e-07 3.42e-07 7.46e-08 2.35e-07 1.37e-07 2.98e-07 2.09e-07 3.95e-07 8.26e-08 9.12e-08 1.17e-07 8.64e-08 2.83e-07 8e-08 8.69e-08 1.33e-07 2.24e-07 2.11e-07 5.01e-08 3.41e-07 1.86e-07 1.57e-07 1.54e-07 1.76e-07 2.01e-07 1.76e-07 5.32e-08 5.2e-08 9.81e-08 1.16e-07 4.68e-08 6.24e-08 5.92e-08 4.9e-08 8.34e-08 3.68e-08 2.43e-07 3.4e-08 1.55e-08 6.59e-08 1.05e-08 9.26e-08 0.0 4.68e-08
ENSG00000203965 \N -543690 5.37e-07 2.89e-07 7.92e-08 2.53e-07 1.07e-07 1.26e-07 3.7e-07 7.98e-08 2.56e-07 1.46e-07 3.47e-07 2.28e-07 4.34e-07 8.85e-08 1.12e-07 1.39e-07 9.3e-08 2.93e-07 9.19e-08 7.49e-08 1.48e-07 2.3e-07 2.33e-07 7.22e-08 3.98e-07 1.94e-07 1.74e-07 1.7e-07 2.03e-07 2.39e-07 1.88e-07 5.3e-08 4.93e-08 1.03e-07 1.39e-07 5.04e-08 5.54e-08 5.36e-08 4.9e-08 8.3e-08 2.84e-08 2.72e-07 3.31e-08 2e-08 7.89e-08 8.42e-09 9.38e-08 0.0 4.74e-08