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Genes within 1Mb (chr1:62964865:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -628546 sc-eQTL 8.51e-01 0.0141 0.0749 0.528 B L1
ENSG00000088035 ALG6 -402710 sc-eQTL 8.25e-01 -0.0172 0.0776 0.528 B L1
ENSG00000116641 DOCK7 276479 sc-eQTL 5.96e-01 0.0412 0.0776 0.528 B L1
ENSG00000125703 ATG4C 180733 sc-eQTL 4.12e-01 -0.0443 0.0539 0.528 B L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 2.96e-01 -0.0897 0.0857 0.528 B L1
ENSG00000162607 USP1 528568 sc-eQTL 7.43e-02 -0.133 0.074 0.528 B L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.15e-01 -0.0207 0.088 0.528 B L1
ENSG00000079739 PGM1 -628546 sc-eQTL 9.85e-02 0.109 0.0655 0.528 CD4T L1
ENSG00000088035 ALG6 -402710 sc-eQTL 6.32e-01 0.0348 0.0727 0.528 CD4T L1
ENSG00000116641 DOCK7 276479 sc-eQTL 3.65e-01 -0.0668 0.0735 0.528 CD4T L1
ENSG00000125703 ATG4C 180733 sc-eQTL 8.46e-01 0.0116 0.0595 0.528 CD4T L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.76e-01 0.0025 0.0844 0.528 CD4T L1
ENSG00000162607 USP1 528568 sc-eQTL 9.31e-01 0.00504 0.0577 0.528 CD4T L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 6.80e-01 0.0313 0.0757 0.528 CD4T L1
ENSG00000079739 PGM1 -628546 sc-eQTL 7.94e-01 -0.019 0.0727 0.528 CD8T L1
ENSG00000088035 ALG6 -402710 sc-eQTL 4.39e-01 0.0621 0.0801 0.528 CD8T L1
ENSG00000116641 DOCK7 276479 sc-eQTL 5.66e-01 0.0466 0.0812 0.528 CD8T L1
ENSG00000125703 ATG4C 180733 sc-eQTL 5.28e-01 -0.0487 0.0771 0.528 CD8T L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 3.36e-01 0.083 0.0861 0.528 CD8T L1
ENSG00000162607 USP1 528568 sc-eQTL 1.69e-01 0.0924 0.0669 0.528 CD8T L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.69e-03 -0.224 0.0846 0.528 CD8T L1
ENSG00000079739 PGM1 -628546 sc-eQTL 2.90e-01 0.0836 0.0787 0.532 DC L1
ENSG00000088035 ALG6 -402710 sc-eQTL 7.92e-01 0.0215 0.0815 0.532 DC L1
ENSG00000116641 DOCK7 276479 sc-eQTL 3.95e-04 0.292 0.0809 0.532 DC L1
ENSG00000125703 ATG4C 180733 sc-eQTL 1.27e-02 0.162 0.0643 0.532 DC L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 3.78e-01 0.0806 0.0912 0.532 DC L1
ENSG00000162607 USP1 528568 sc-eQTL 5.84e-01 0.0437 0.0797 0.532 DC L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 2.56e-01 0.0903 0.0793 0.532 DC L1
ENSG00000079739 PGM1 -628546 sc-eQTL 8.48e-01 0.0152 0.0791 0.528 Mono L1
ENSG00000088035 ALG6 -402710 sc-eQTL 8.49e-01 -0.0157 0.0825 0.528 Mono L1
ENSG00000116641 DOCK7 276479 sc-eQTL 5.05e-01 0.0532 0.0797 0.528 Mono L1
ENSG00000125703 ATG4C 180733 sc-eQTL 9.56e-01 -0.003 0.054 0.528 Mono L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 4.55e-01 -0.0637 0.0852 0.528 Mono L1
ENSG00000162607 USP1 528568 sc-eQTL 6.73e-01 -0.0296 0.07 0.528 Mono L1
ENSG00000240563 L1TD1 770016 sc-eQTL 6.83e-01 -0.0267 0.0653 0.528 Mono L1
ENSG00000079739 PGM1 -628546 sc-eQTL 3.07e-01 -0.0676 0.0659 0.528 NK L1
ENSG00000088035 ALG6 -402710 sc-eQTL 4.69e-01 0.0562 0.0774 0.528 NK L1
ENSG00000116641 DOCK7 276479 sc-eQTL 5.00e-01 0.0431 0.0638 0.528 NK L1
ENSG00000125703 ATG4C 180733 sc-eQTL 8.13e-01 0.0162 0.0686 0.528 NK L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 5.38e-01 -0.0525 0.0851 0.528 NK L1
ENSG00000162607 USP1 528568 sc-eQTL 1.41e-01 -0.112 0.0758 0.528 NK L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.29e-01 -0.02 0.0925 0.528 NK L1
ENSG00000079739 PGM1 -628546 sc-eQTL 3.82e-01 -0.0659 0.0753 0.528 Other_T L1
ENSG00000088035 ALG6 -402710 sc-eQTL 9.42e-01 0.00548 0.0758 0.528 Other_T L1
ENSG00000116641 DOCK7 276479 sc-eQTL 6.66e-01 0.0335 0.0773 0.528 Other_T L1
ENSG00000125703 ATG4C 180733 sc-eQTL 1.40e-01 0.0987 0.0666 0.528 Other_T L1
ENSG00000142856 ITGB3BP -628856 sc-eQTL 4.21e-02 0.12 0.0588 0.528 Other_T L1
ENSG00000162607 USP1 528568 sc-eQTL 1.72e-01 -0.0702 0.0512 0.528 Other_T L1
ENSG00000203965 EFCAB7 -558507 sc-eQTL 2.46e-01 -0.106 0.0913 0.528 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -628546 sc-eQTL 5.53e-01 0.0613 0.103 0.526 B_Activated L2
ENSG00000088035 ALG6 -402710 sc-eQTL 3.70e-01 -0.0888 0.0988 0.526 B_Activated L2
ENSG00000116641 DOCK7 276479 sc-eQTL 6.21e-01 0.0457 0.0921 0.526 B_Activated L2
ENSG00000125703 ATG4C 180733 sc-eQTL 3.96e-01 0.0823 0.0967 0.526 B_Activated L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.26e-01 -0.0462 0.0946 0.526 B_Activated L2
ENSG00000162607 USP1 528568 sc-eQTL 6.57e-01 0.0456 0.103 0.526 B_Activated L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.29e-01 -0.071 0.0895 0.526 B_Activated L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.82e-02 0.177 0.0889 0.528 B_Intermediate L2
ENSG00000088035 ALG6 -402710 sc-eQTL 7.07e-01 0.0343 0.0911 0.528 B_Intermediate L2
ENSG00000116641 DOCK7 276479 sc-eQTL 7.58e-01 0.0269 0.0871 0.528 B_Intermediate L2
ENSG00000125703 ATG4C 180733 sc-eQTL 8.75e-01 -0.0116 0.0737 0.528 B_Intermediate L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 2.39e-02 -0.197 0.0868 0.528 B_Intermediate L2
ENSG00000162607 USP1 528568 sc-eQTL 6.82e-01 -0.036 0.0876 0.528 B_Intermediate L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.43e-01 -0.0173 0.087 0.528 B_Intermediate L2
ENSG00000079739 PGM1 -628546 sc-eQTL 6.53e-01 0.0396 0.0881 0.53 B_Memory L2
ENSG00000088035 ALG6 -402710 sc-eQTL 4.48e-01 -0.068 0.0895 0.53 B_Memory L2
ENSG00000116641 DOCK7 276479 sc-eQTL 1.41e-01 -0.124 0.0836 0.53 B_Memory L2
ENSG00000125703 ATG4C 180733 sc-eQTL 2.53e-01 0.0912 0.0796 0.53 B_Memory L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 5.48e-02 -0.175 0.0906 0.53 B_Memory L2
ENSG00000162607 USP1 528568 sc-eQTL 1.95e-02 -0.214 0.091 0.53 B_Memory L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 3.48e-01 0.0852 0.0905 0.53 B_Memory L2
ENSG00000079739 PGM1 -628546 sc-eQTL 5.33e-01 -0.0562 0.0899 0.528 B_Naive1 L2
ENSG00000088035 ALG6 -402710 sc-eQTL 6.03e-01 -0.047 0.0903 0.528 B_Naive1 L2
ENSG00000116641 DOCK7 276479 sc-eQTL 5.14e-01 0.0566 0.0865 0.528 B_Naive1 L2
ENSG00000125703 ATG4C 180733 sc-eQTL 2.09e-01 -0.0838 0.0665 0.528 B_Naive1 L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.75e-01 0.00273 0.0885 0.528 B_Naive1 L2
ENSG00000162607 USP1 528568 sc-eQTL 1.76e-01 -0.105 0.0775 0.528 B_Naive1 L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.46e-01 -0.0183 0.0944 0.528 B_Naive1 L2
ENSG00000079739 PGM1 -628546 sc-eQTL 6.06e-01 0.0455 0.088 0.53 B_Naive2 L2
ENSG00000088035 ALG6 -402710 sc-eQTL 5.07e-01 -0.0609 0.0917 0.53 B_Naive2 L2
ENSG00000116641 DOCK7 276479 sc-eQTL 6.74e-01 -0.0372 0.0883 0.53 B_Naive2 L2
ENSG00000125703 ATG4C 180733 sc-eQTL 8.83e-01 -0.0125 0.085 0.53 B_Naive2 L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 8.37e-01 -0.019 0.0922 0.53 B_Naive2 L2
ENSG00000162607 USP1 528568 sc-eQTL 2.87e-01 0.0934 0.0875 0.53 B_Naive2 L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 3.62e-01 -0.0836 0.0916 0.53 B_Naive2 L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.78e-01 -0.122 0.0904 0.536 CD4_CTL L2
ENSG00000088035 ALG6 -402710 sc-eQTL 3.46e-02 0.202 0.095 0.536 CD4_CTL L2
ENSG00000116641 DOCK7 276479 sc-eQTL 6.54e-01 -0.0377 0.0839 0.536 CD4_CTL L2
ENSG00000125703 ATG4C 180733 sc-eQTL 4.93e-01 -0.0596 0.0868 0.536 CD4_CTL L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.67e-01 0.04 0.0929 0.536 CD4_CTL L2
ENSG00000162607 USP1 528568 sc-eQTL 5.80e-01 0.049 0.0884 0.536 CD4_CTL L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.57e-01 0.0159 0.0883 0.536 CD4_CTL L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.21e-01 0.115 0.0737 0.528 CD4_Naive L2
ENSG00000088035 ALG6 -402710 sc-eQTL 6.36e-01 -0.0381 0.0805 0.528 CD4_Naive L2
ENSG00000116641 DOCK7 276479 sc-eQTL 5.03e-01 -0.053 0.0791 0.528 CD4_Naive L2
ENSG00000125703 ATG4C 180733 sc-eQTL 8.33e-01 0.0148 0.07 0.528 CD4_Naive L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 8.68e-01 -0.0142 0.0855 0.528 CD4_Naive L2
ENSG00000162607 USP1 528568 sc-eQTL 8.27e-01 -0.0143 0.0653 0.528 CD4_Naive L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.70e-01 0.0613 0.0848 0.528 CD4_Naive L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.70e-01 0.106 0.0767 0.528 CD4_TCM L2
ENSG00000088035 ALG6 -402710 sc-eQTL 8.05e-01 -0.0221 0.0894 0.528 CD4_TCM L2
ENSG00000116641 DOCK7 276479 sc-eQTL 2.27e-01 -0.0957 0.079 0.528 CD4_TCM L2
ENSG00000125703 ATG4C 180733 sc-eQTL 6.18e-01 0.0385 0.0771 0.528 CD4_TCM L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 7.71e-01 -0.0265 0.0909 0.528 CD4_TCM L2
ENSG00000162607 USP1 528568 sc-eQTL 3.97e-01 0.0632 0.0744 0.528 CD4_TCM L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 6.50e-01 -0.04 0.088 0.528 CD4_TCM L2
ENSG00000079739 PGM1 -628546 sc-eQTL 8.53e-01 -0.0166 0.0895 0.528 CD4_TEM L2
ENSG00000088035 ALG6 -402710 sc-eQTL 5.88e-01 0.0488 0.0899 0.528 CD4_TEM L2
ENSG00000116641 DOCK7 276479 sc-eQTL 4.68e-01 -0.0637 0.0876 0.528 CD4_TEM L2
ENSG00000125703 ATG4C 180733 sc-eQTL 5.39e-01 0.0524 0.0851 0.528 CD4_TEM L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 4.84e-01 -0.0616 0.0878 0.528 CD4_TEM L2
ENSG00000162607 USP1 528568 sc-eQTL 5.14e-01 0.0544 0.0832 0.528 CD4_TEM L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 7.24e-01 0.0322 0.091 0.528 CD4_TEM L2
ENSG00000079739 PGM1 -628546 sc-eQTL 9.10e-01 0.00924 0.0819 0.528 CD8_CTL L2
ENSG00000088035 ALG6 -402710 sc-eQTL 4.47e-02 0.174 0.0863 0.528 CD8_CTL L2
ENSG00000116641 DOCK7 276479 sc-eQTL 7.13e-01 0.0305 0.0826 0.528 CD8_CTL L2
ENSG00000125703 ATG4C 180733 sc-eQTL 3.74e-01 -0.0781 0.0878 0.528 CD8_CTL L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 3.72e-01 0.0816 0.0913 0.528 CD8_CTL L2
ENSG00000162607 USP1 528568 sc-eQTL 1.18e-01 0.128 0.0815 0.528 CD8_CTL L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.04e-02 -0.191 0.0928 0.528 CD8_CTL L2
ENSG00000079739 PGM1 -628546 sc-eQTL 5.66e-01 0.0478 0.0832 0.528 CD8_Naive L2
ENSG00000088035 ALG6 -402710 sc-eQTL 5.67e-01 -0.0493 0.0861 0.528 CD8_Naive L2
ENSG00000116641 DOCK7 276479 sc-eQTL 6.33e-02 0.165 0.0883 0.528 CD8_Naive L2
ENSG00000125703 ATG4C 180733 sc-eQTL 8.00e-01 -0.0216 0.0855 0.528 CD8_Naive L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.20e-01 0.043 0.0865 0.528 CD8_Naive L2
ENSG00000162607 USP1 528568 sc-eQTL 5.05e-01 0.0489 0.0731 0.528 CD8_Naive L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 8.89e-01 -0.0114 0.0816 0.528 CD8_Naive L2
ENSG00000079739 PGM1 -628546 sc-eQTL 7.77e-01 -0.0269 0.0948 0.542 CD8_TCM L2
ENSG00000088035 ALG6 -402710 sc-eQTL 5.87e-01 0.0522 0.0959 0.542 CD8_TCM L2
ENSG00000116641 DOCK7 276479 sc-eQTL 9.34e-01 0.00782 0.0937 0.542 CD8_TCM L2
ENSG00000125703 ATG4C 180733 sc-eQTL 1.23e-01 -0.148 0.0952 0.542 CD8_TCM L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.09e-01 0.0106 0.0931 0.542 CD8_TCM L2
ENSG00000162607 USP1 528568 sc-eQTL 3.78e-01 -0.079 0.0894 0.542 CD8_TCM L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 1.22e-01 -0.146 0.0943 0.542 CD8_TCM L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.57e-01 0.0698 0.0936 0.534 CD8_TEM L2
ENSG00000088035 ALG6 -402710 sc-eQTL 6.30e-01 0.0454 0.094 0.534 CD8_TEM L2
ENSG00000116641 DOCK7 276479 sc-eQTL 9.48e-01 0.00599 0.0912 0.534 CD8_TEM L2
ENSG00000125703 ATG4C 180733 sc-eQTL 8.84e-02 0.149 0.087 0.534 CD8_TEM L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 7.28e-01 -0.033 0.0949 0.534 CD8_TEM L2
ENSG00000162607 USP1 528568 sc-eQTL 9.71e-01 0.00333 0.0905 0.534 CD8_TEM L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 1.53e-01 -0.131 0.0915 0.534 CD8_TEM L2
ENSG00000079739 PGM1 -628546 sc-eQTL 8.86e-01 -0.0125 0.0875 0.528 MAIT L2
ENSG00000088035 ALG6 -402710 sc-eQTL 1.92e-01 0.113 0.0863 0.528 MAIT L2
ENSG00000116641 DOCK7 276479 sc-eQTL 2.87e-01 0.0883 0.0828 0.528 MAIT L2
ENSG00000125703 ATG4C 180733 sc-eQTL 6.39e-01 0.0411 0.0875 0.528 MAIT L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 3.18e-01 0.0876 0.0875 0.528 MAIT L2
ENSG00000162607 USP1 528568 sc-eQTL 2.32e-01 -0.104 0.0867 0.528 MAIT L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 6.15e-01 0.0455 0.0902 0.528 MAIT L2
ENSG00000079739 PGM1 -628546 sc-eQTL 5.53e-01 -0.0527 0.0888 0.529 NK_CD56bright L2
ENSG00000088035 ALG6 -402710 sc-eQTL 9.65e-01 -0.00405 0.0911 0.529 NK_CD56bright L2
ENSG00000116641 DOCK7 276479 sc-eQTL 4.81e-01 -0.0556 0.0788 0.529 NK_CD56bright L2
ENSG00000125703 ATG4C 180733 sc-eQTL 5.68e-01 0.0504 0.0881 0.529 NK_CD56bright L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 5.32e-04 -0.314 0.0891 0.529 NK_CD56bright L2
ENSG00000162607 USP1 528568 sc-eQTL 6.88e-01 -0.0381 0.0946 0.529 NK_CD56bright L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 6.91e-01 -0.036 0.0905 0.529 NK_CD56bright L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.96e-01 -0.0889 0.0686 0.528 NK_CD56dim L2
ENSG00000088035 ALG6 -402710 sc-eQTL 8.66e-01 0.0148 0.0874 0.528 NK_CD56dim L2
ENSG00000116641 DOCK7 276479 sc-eQTL 4.56e-01 0.0567 0.0759 0.528 NK_CD56dim L2
ENSG00000125703 ATG4C 180733 sc-eQTL 6.95e-01 0.0303 0.0772 0.528 NK_CD56dim L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.61e-01 0.00429 0.0879 0.528 NK_CD56dim L2
ENSG00000162607 USP1 528568 sc-eQTL 1.73e-01 -0.116 0.0849 0.528 NK_CD56dim L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.75e-01 -0.0678 0.0948 0.528 NK_CD56dim L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.27e-01 -0.0736 0.0924 0.532 NK_HLA L2
ENSG00000088035 ALG6 -402710 sc-eQTL 9.94e-01 0.000734 0.096 0.532 NK_HLA L2
ENSG00000116641 DOCK7 276479 sc-eQTL 3.55e-01 0.0679 0.0732 0.532 NK_HLA L2
ENSG00000125703 ATG4C 180733 sc-eQTL 3.53e-01 -0.0794 0.0852 0.532 NK_HLA L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 1.11e-01 0.143 0.0891 0.532 NK_HLA L2
ENSG00000162607 USP1 528568 sc-eQTL 3.80e-01 -0.0824 0.0936 0.532 NK_HLA L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 5.18e-01 -0.0552 0.0853 0.532 NK_HLA L2
ENSG00000079739 PGM1 -628546 sc-eQTL 7.95e-01 -0.0197 0.0757 0.528 NK_cytokine L2
ENSG00000088035 ALG6 -402710 sc-eQTL 8.84e-01 0.0124 0.0855 0.528 NK_cytokine L2
ENSG00000116641 DOCK7 276479 sc-eQTL 8.89e-01 -0.0111 0.0792 0.528 NK_cytokine L2
ENSG00000125703 ATG4C 180733 sc-eQTL 3.80e-01 -0.0712 0.0809 0.528 NK_cytokine L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.71e-01 0.0357 0.0839 0.528 NK_cytokine L2
ENSG00000162607 USP1 528568 sc-eQTL 9.47e-01 -0.00583 0.0883 0.528 NK_cytokine L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 1.96e-01 0.116 0.0891 0.528 NK_cytokine L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.14e-01 -0.0851 0.104 0.496 PB L2
ENSG00000088035 ALG6 -402710 sc-eQTL 2.89e-01 0.116 0.109 0.496 PB L2
ENSG00000116641 DOCK7 276479 sc-eQTL 3.49e-01 0.109 0.116 0.496 PB L2
ENSG00000125703 ATG4C 180733 sc-eQTL 6.62e-01 0.0447 0.102 0.496 PB L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.48e-01 -0.0465 0.102 0.496 PB L2
ENSG00000162607 USP1 528568 sc-eQTL 2.26e-02 -0.229 0.0989 0.496 PB L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 2.76e-01 -0.121 0.111 0.496 PB L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.50e-01 -0.0639 0.0845 0.533 Pro_T L2
ENSG00000088035 ALG6 -402710 sc-eQTL 2.17e-01 0.106 0.0858 0.533 Pro_T L2
ENSG00000116641 DOCK7 276479 sc-eQTL 3.72e-01 0.0772 0.0862 0.533 Pro_T L2
ENSG00000125703 ATG4C 180733 sc-eQTL 7.63e-01 0.0229 0.0756 0.533 Pro_T L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 2.31e-01 0.0908 0.0756 0.533 Pro_T L2
ENSG00000162607 USP1 528568 sc-eQTL 8.87e-01 0.00744 0.0521 0.533 Pro_T L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 3.85e-03 -0.252 0.0863 0.533 Pro_T L2
ENSG00000079739 PGM1 -628546 sc-eQTL 2.44e-01 0.102 0.0869 0.528 Treg L2
ENSG00000088035 ALG6 -402710 sc-eQTL 8.45e-01 0.0182 0.0933 0.528 Treg L2
ENSG00000116641 DOCK7 276479 sc-eQTL 4.72e-01 -0.0616 0.0855 0.528 Treg L2
ENSG00000125703 ATG4C 180733 sc-eQTL 1.70e-01 0.12 0.0871 0.528 Treg L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.67e-01 0.00381 0.0915 0.528 Treg L2
ENSG00000162607 USP1 528568 sc-eQTL 6.43e-01 0.0411 0.0885 0.528 Treg L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 2.60e-02 -0.194 0.0866 0.528 Treg L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.68e-01 0.0632 0.087 0.522 cDC L2
ENSG00000088035 ALG6 -402710 sc-eQTL 9.42e-01 -0.00645 0.0884 0.522 cDC L2
ENSG00000116641 DOCK7 276479 sc-eQTL 1.44e-02 0.211 0.0853 0.522 cDC L2
ENSG00000125703 ATG4C 180733 sc-eQTL 7.82e-02 0.132 0.0747 0.522 cDC L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.13e-01 0.0105 0.0955 0.522 cDC L2
ENSG00000162607 USP1 528568 sc-eQTL 9.10e-01 -0.00959 0.085 0.522 cDC L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 3.73e-01 -0.0684 0.0766 0.522 cDC L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.57e-01 0.115 0.0812 0.528 cMono_IL1B L2
ENSG00000088035 ALG6 -402710 sc-eQTL 2.66e-01 -0.0908 0.0814 0.528 cMono_IL1B L2
ENSG00000116641 DOCK7 276479 sc-eQTL 3.83e-01 0.0751 0.086 0.528 cMono_IL1B L2
ENSG00000125703 ATG4C 180733 sc-eQTL 5.39e-01 -0.0372 0.0605 0.528 cMono_IL1B L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 1.11e-01 -0.137 0.0853 0.528 cMono_IL1B L2
ENSG00000162607 USP1 528568 sc-eQTL 5.46e-01 -0.0457 0.0756 0.528 cMono_IL1B L2
ENSG00000240563 L1TD1 770016 sc-eQTL 7.49e-01 -0.0243 0.076 0.528 cMono_IL1B L2
ENSG00000079739 PGM1 -628546 sc-eQTL 7.41e-01 0.0307 0.0928 0.528 cMono_S100A L2
ENSG00000088035 ALG6 -402710 sc-eQTL 7.91e-01 0.0249 0.0941 0.528 cMono_S100A L2
ENSG00000116641 DOCK7 276479 sc-eQTL 7.03e-01 -0.0333 0.0872 0.528 cMono_S100A L2
ENSG00000125703 ATG4C 180733 sc-eQTL 6.63e-01 0.033 0.0755 0.528 cMono_S100A L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.44e-01 -0.0394 0.0851 0.528 cMono_S100A L2
ENSG00000162607 USP1 528568 sc-eQTL 9.17e-01 0.00918 0.0877 0.528 cMono_S100A L2
ENSG00000240563 L1TD1 770016 sc-eQTL 1.40e-01 -0.108 0.0726 0.528 cMono_S100A L2
ENSG00000079739 PGM1 -628546 sc-eQTL 8.41e-01 0.0213 0.106 0.524 gdT L2
ENSG00000088035 ALG6 -402710 sc-eQTL 7.63e-02 -0.2 0.112 0.524 gdT L2
ENSG00000116641 DOCK7 276479 sc-eQTL 5.90e-01 -0.0598 0.111 0.524 gdT L2
ENSG00000125703 ATG4C 180733 sc-eQTL 4.93e-01 0.0726 0.106 0.524 gdT L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 3.65e-01 0.102 0.112 0.524 gdT L2
ENSG00000162607 USP1 528568 sc-eQTL 4.25e-01 -0.085 0.106 0.524 gdT L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 2.06e-01 -0.14 0.11 0.524 gdT L2
ENSG00000079739 PGM1 -628546 sc-eQTL 7.74e-01 -0.0263 0.0913 0.529 intMono L2
ENSG00000088035 ALG6 -402710 sc-eQTL 6.59e-01 -0.0375 0.085 0.529 intMono L2
ENSG00000116641 DOCK7 276479 sc-eQTL 6.56e-01 0.0387 0.0868 0.529 intMono L2
ENSG00000125703 ATG4C 180733 sc-eQTL 4.37e-01 0.0644 0.0828 0.529 intMono L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 8.41e-01 -0.0183 0.0913 0.529 intMono L2
ENSG00000162607 USP1 528568 sc-eQTL 7.16e-01 -0.0338 0.0928 0.529 intMono L2
ENSG00000240563 L1TD1 770016 sc-eQTL 5.44e-01 0.0414 0.0682 0.529 intMono L2
ENSG00000079739 PGM1 -628546 sc-eQTL 1.80e-01 -0.11 0.0819 0.523 ncMono L2
ENSG00000088035 ALG6 -402710 sc-eQTL 2.32e-01 0.108 0.09 0.523 ncMono L2
ENSG00000116641 DOCK7 276479 sc-eQTL 3.97e-01 0.0753 0.0888 0.523 ncMono L2
ENSG00000125703 ATG4C 180733 sc-eQTL 4.01e-01 0.0697 0.0829 0.523 ncMono L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.76e-01 0.0363 0.0869 0.523 ncMono L2
ENSG00000162607 USP1 528568 sc-eQTL 1.43e-02 -0.216 0.0874 0.523 ncMono L2
ENSG00000240563 L1TD1 770016 sc-eQTL 8.25e-01 -0.0139 0.063 0.523 ncMono L2
ENSG00000079739 PGM1 -628546 sc-eQTL 4.91e-01 0.0698 0.101 0.534 pDC L2
ENSG00000088035 ALG6 -402710 sc-eQTL 1.28e-01 0.15 0.098 0.534 pDC L2
ENSG00000116641 DOCK7 276479 sc-eQTL 1.71e-01 0.138 0.1 0.534 pDC L2
ENSG00000125703 ATG4C 180733 sc-eQTL 3.58e-01 0.0833 0.0903 0.534 pDC L2
ENSG00000142856 ITGB3BP -628856 sc-eQTL 5.35e-01 0.0631 0.101 0.534 pDC L2
ENSG00000162607 USP1 528568 sc-eQTL 5.19e-01 0.0668 0.103 0.534 pDC L2
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.18e-01 0.0729 0.0897 0.534 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -628546 sc-eQTL 1.75e-01 0.112 0.0825 0.528 B_Memory LOneK1K
ENSG00000088035 ALG6 -402710 sc-eQTL 9.99e-01 5.95e-05 0.0917 0.528 B_Memory LOneK1K
ENSG00000116641 DOCK7 276479 sc-eQTL 4.43e-01 -0.0611 0.0794 0.528 B_Memory LOneK1K
ENSG00000125703 ATG4C 180733 sc-eQTL 6.18e-01 0.0321 0.0643 0.528 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -628856 sc-eQTL 2.14e-03 -0.257 0.0826 0.528 B_Memory LOneK1K
ENSG00000162607 USP1 528568 sc-eQTL 3.80e-02 -0.17 0.0812 0.528 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -558507 sc-eQTL 7.35e-01 0.0299 0.088 0.528 B_Memory LOneK1K
ENSG00000079739 PGM1 -628546 sc-eQTL 8.23e-01 -0.0197 0.0879 0.528 B_Naive LOneK1K
ENSG00000088035 ALG6 -402710 sc-eQTL 3.38e-01 -0.0868 0.0904 0.528 B_Naive LOneK1K
ENSG00000116641 DOCK7 276479 sc-eQTL 6.69e-01 0.0362 0.0845 0.528 B_Naive LOneK1K
ENSG00000125703 ATG4C 180733 sc-eQTL 2.06e-01 -0.0815 0.0643 0.528 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -628856 sc-eQTL 7.76e-01 0.026 0.0912 0.528 B_Naive LOneK1K
ENSG00000162607 USP1 528568 sc-eQTL 4.13e-01 -0.0642 0.0783 0.528 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -558507 sc-eQTL 4.67e-01 -0.0667 0.0916 0.528 B_Naive LOneK1K
ENSG00000079739 PGM1 -628546 sc-eQTL 3.74e-01 0.0751 0.0843 0.528 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -402710 sc-eQTL 5.75e-01 -0.0459 0.0818 0.528 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 276479 sc-eQTL 5.79e-01 0.0458 0.0823 0.528 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 180733 sc-eQTL 7.34e-01 -0.0194 0.0569 0.528 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -628856 sc-eQTL 1.91e-01 -0.11 0.0839 0.528 CD14_Mono LOneK1K
ENSG00000162607 USP1 528568 sc-eQTL 8.04e-01 0.0179 0.072 0.528 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 770016 sc-eQTL 6.97e-01 -0.0305 0.078 0.528 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -628546 sc-eQTL 1.32e-01 -0.119 0.0784 0.53 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -402710 sc-eQTL 2.83e-01 0.0962 0.0893 0.53 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 276479 sc-eQTL 2.06e-01 0.112 0.0883 0.53 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 180733 sc-eQTL 5.01e-01 0.0508 0.0754 0.53 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -628856 sc-eQTL 6.19e-01 0.0436 0.0876 0.53 CD16_Mono LOneK1K
ENSG00000162607 USP1 528568 sc-eQTL 2.04e-01 -0.105 0.0821 0.53 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 770016 sc-eQTL 7.87e-01 0.0152 0.0562 0.53 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -628546 sc-eQTL 3.32e-01 -0.0651 0.0669 0.528 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -402710 sc-eQTL 8.15e-01 0.0189 0.0805 0.528 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 276479 sc-eQTL 5.37e-01 0.0446 0.0721 0.528 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 180733 sc-eQTL 8.52e-01 -0.0134 0.072 0.528 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -628856 sc-eQTL 9.70e-01 0.00327 0.0853 0.528 NK_CD56dim LOneK1K
ENSG00000162607 USP1 528568 sc-eQTL 1.05e-01 -0.125 0.077 0.528 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -558507 sc-eQTL 7.66e-01 0.0281 0.0942 0.528 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116652 \N -582217 3.53e-07 1.59e-07 5.91e-08 2.22e-07 1.02e-07 8.63e-08 2.4e-07 5.78e-08 1.85e-07 9.72e-08 1.86e-07 1.46e-07 2.45e-07 8.07e-08 5.69e-08 9.11e-08 4.25e-08 1.91e-07 7.12e-08 5.46e-08 1.22e-07 1.65e-07 1.68e-07 3.51e-08 2.37e-07 1.31e-07 1.23e-07 1.12e-07 1.37e-07 1.33e-07 1.26e-07 3.84e-08 3.46e-08 9.58e-08 3.97e-08 2.79e-08 5.35e-08 8.37e-08 6.41e-08 4.08e-08 5.77e-08 1.6e-07 4.17e-08 1.09e-08 3.55e-08 1.71e-08 8.67e-08 2.05e-09 4.83e-08