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Genes within 1Mb (chr1:62957239:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -636172 sc-eQTL 6.19e-01 0.0356 0.0716 0.434 B L1
ENSG00000088035 ALG6 -410336 sc-eQTL 4.06e-01 0.0617 0.0741 0.434 B L1
ENSG00000116641 DOCK7 268853 sc-eQTL 2.58e-01 -0.0838 0.0739 0.434 B L1
ENSG00000125703 ATG4C 173107 sc-eQTL 9.35e-01 0.00424 0.0516 0.434 B L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 7.82e-01 0.0227 0.082 0.434 B L1
ENSG00000162607 USP1 520942 sc-eQTL 2.63e-02 0.157 0.0704 0.434 B L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.61e-01 -0.0256 0.084 0.434 B L1
ENSG00000079739 PGM1 -636172 sc-eQTL 9.70e-02 -0.105 0.0628 0.434 CD4T L1
ENSG00000088035 ALG6 -410336 sc-eQTL 4.30e-01 -0.0551 0.0696 0.434 CD4T L1
ENSG00000116641 DOCK7 268853 sc-eQTL 1.72e-01 0.0962 0.0703 0.434 CD4T L1
ENSG00000125703 ATG4C 173107 sc-eQTL 3.29e-01 -0.0556 0.0569 0.434 CD4T L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 7.43e-01 0.0266 0.0809 0.434 CD4T L1
ENSG00000162607 USP1 520942 sc-eQTL 1.78e-01 0.0745 0.0551 0.434 CD4T L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 8.39e-01 -0.0148 0.0726 0.434 CD4T L1
ENSG00000079739 PGM1 -636172 sc-eQTL 4.15e-01 0.0567 0.0694 0.434 CD8T L1
ENSG00000088035 ALG6 -410336 sc-eQTL 6.54e-01 -0.0343 0.0766 0.434 CD8T L1
ENSG00000116641 DOCK7 268853 sc-eQTL 1.77e-02 -0.183 0.0766 0.434 CD8T L1
ENSG00000125703 ATG4C 173107 sc-eQTL 9.95e-01 -0.000495 0.0737 0.434 CD8T L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.19e-01 -0.101 0.0821 0.434 CD8T L1
ENSG00000162607 USP1 520942 sc-eQTL 4.27e-01 -0.0511 0.0641 0.434 CD8T L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 3.40e-02 0.173 0.0813 0.434 CD8T L1
ENSG00000079739 PGM1 -636172 sc-eQTL 3.72e-02 -0.159 0.0757 0.432 DC L1
ENSG00000088035 ALG6 -410336 sc-eQTL 1.87e-01 -0.104 0.0786 0.432 DC L1
ENSG00000116641 DOCK7 268853 sc-eQTL 9.51e-03 -0.208 0.0796 0.432 DC L1
ENSG00000125703 ATG4C 173107 sc-eQTL 2.34e-03 -0.191 0.0619 0.432 DC L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 4.13e-01 -0.0725 0.0884 0.432 DC L1
ENSG00000162607 USP1 520942 sc-eQTL 8.33e-01 0.0163 0.0773 0.432 DC L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 1.91e-03 -0.237 0.0752 0.432 DC L1
ENSG00000079739 PGM1 -636172 sc-eQTL 1.88e-01 -0.0996 0.0755 0.434 Mono L1
ENSG00000088035 ALG6 -410336 sc-eQTL 9.97e-01 0.000307 0.0791 0.434 Mono L1
ENSG00000116641 DOCK7 268853 sc-eQTL 8.40e-01 -0.0154 0.0765 0.434 Mono L1
ENSG00000125703 ATG4C 173107 sc-eQTL 3.50e-01 0.0483 0.0516 0.434 Mono L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 3.77e-01 0.0722 0.0815 0.434 Mono L1
ENSG00000162607 USP1 520942 sc-eQTL 2.97e-01 0.07 0.0669 0.434 Mono L1
ENSG00000240563 L1TD1 762390 sc-eQTL 9.02e-01 0.00772 0.0626 0.434 Mono L1
ENSG00000079739 PGM1 -636172 sc-eQTL 1.40e-01 0.0933 0.063 0.433 NK L1
ENSG00000088035 ALG6 -410336 sc-eQTL 2.64e-01 -0.083 0.0741 0.433 NK L1
ENSG00000116641 DOCK7 268853 sc-eQTL 9.13e-01 -0.00666 0.0612 0.433 NK L1
ENSG00000125703 ATG4C 173107 sc-eQTL 9.55e-01 -0.00375 0.0657 0.433 NK L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 5.46e-01 -0.0494 0.0816 0.433 NK L1
ENSG00000162607 USP1 520942 sc-eQTL 1.61e-02 0.175 0.072 0.433 NK L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 2.94e-01 0.0931 0.0885 0.433 NK L1
ENSG00000079739 PGM1 -636172 sc-eQTL 6.64e-01 0.0319 0.0733 0.434 Other_T L1
ENSG00000088035 ALG6 -410336 sc-eQTL 9.94e-01 0.000511 0.0737 0.434 Other_T L1
ENSG00000116641 DOCK7 268853 sc-eQTL 3.32e-01 -0.073 0.0751 0.434 Other_T L1
ENSG00000125703 ATG4C 173107 sc-eQTL 3.92e-01 -0.0557 0.065 0.434 Other_T L1
ENSG00000142856 ITGB3BP -636482 sc-eQTL 3.04e-02 -0.124 0.0571 0.434 Other_T L1
ENSG00000162607 USP1 520942 sc-eQTL 5.94e-02 0.0941 0.0496 0.434 Other_T L1
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.39e-01 0.0691 0.089 0.434 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -636172 sc-eQTL 8.12e-01 -0.0238 0.1 0.444 B_Activated L2
ENSG00000088035 ALG6 -410336 sc-eQTL 1.42e-01 -0.14 0.0953 0.444 B_Activated L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.35e-01 0.0554 0.0892 0.444 B_Activated L2
ENSG00000125703 ATG4C 173107 sc-eQTL 2.14e-01 -0.117 0.0935 0.444 B_Activated L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 7.45e-01 -0.0299 0.0917 0.444 B_Activated L2
ENSG00000162607 USP1 520942 sc-eQTL 2.69e-01 -0.11 0.0991 0.444 B_Activated L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.79e-02 0.171 0.0859 0.444 B_Activated L2
ENSG00000079739 PGM1 -636172 sc-eQTL 4.61e-01 -0.064 0.0866 0.433 B_Intermediate L2
ENSG00000088035 ALG6 -410336 sc-eQTL 9.05e-01 -0.0106 0.0881 0.433 B_Intermediate L2
ENSG00000116641 DOCK7 268853 sc-eQTL 9.26e-01 -0.00779 0.0841 0.433 B_Intermediate L2
ENSG00000125703 ATG4C 173107 sc-eQTL 9.22e-01 0.00694 0.0712 0.433 B_Intermediate L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.18e-01 0.104 0.0845 0.433 B_Intermediate L2
ENSG00000162607 USP1 520942 sc-eQTL 8.57e-01 -0.0153 0.0847 0.433 B_Intermediate L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 8.72e-01 0.0136 0.084 0.433 B_Intermediate L2
ENSG00000079739 PGM1 -636172 sc-eQTL 9.87e-01 -0.00145 0.0858 0.431 B_Memory L2
ENSG00000088035 ALG6 -410336 sc-eQTL 8.16e-01 -0.0203 0.0872 0.431 B_Memory L2
ENSG00000116641 DOCK7 268853 sc-eQTL 3.19e-01 0.0816 0.0816 0.431 B_Memory L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.83e-01 -0.0678 0.0776 0.431 B_Memory L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 7.86e-02 0.156 0.0883 0.431 B_Memory L2
ENSG00000162607 USP1 520942 sc-eQTL 2.49e-02 0.2 0.0887 0.431 B_Memory L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.56e-01 -0.0659 0.0882 0.431 B_Memory L2
ENSG00000079739 PGM1 -636172 sc-eQTL 3.34e-01 0.0831 0.0859 0.434 B_Naive1 L2
ENSG00000088035 ALG6 -410336 sc-eQTL 1.53e-02 0.208 0.0852 0.434 B_Naive1 L2
ENSG00000116641 DOCK7 268853 sc-eQTL 4.76e-01 -0.059 0.0827 0.434 B_Naive1 L2
ENSG00000125703 ATG4C 173107 sc-eQTL 7.03e-01 0.0244 0.0637 0.434 B_Naive1 L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 3.92e-01 -0.0724 0.0844 0.434 B_Naive1 L2
ENSG00000162607 USP1 520942 sc-eQTL 4.25e-01 0.0593 0.0743 0.434 B_Naive1 L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.87e-01 -0.0244 0.0902 0.434 B_Naive1 L2
ENSG00000079739 PGM1 -636172 sc-eQTL 5.68e-01 -0.049 0.0857 0.431 B_Naive2 L2
ENSG00000088035 ALG6 -410336 sc-eQTL 5.98e-01 0.0472 0.0893 0.431 B_Naive2 L2
ENSG00000116641 DOCK7 268853 sc-eQTL 8.61e-01 0.015 0.0859 0.431 B_Naive2 L2
ENSG00000125703 ATG4C 173107 sc-eQTL 5.43e-01 0.0503 0.0827 0.431 B_Naive2 L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.74e-01 0.0981 0.0895 0.431 B_Naive2 L2
ENSG00000162607 USP1 520942 sc-eQTL 9.69e-01 0.00334 0.0854 0.431 B_Naive2 L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 9.74e-01 -0.00296 0.0893 0.431 B_Naive2 L2
ENSG00000079739 PGM1 -636172 sc-eQTL 2.20e-01 0.108 0.088 0.434 CD4_CTL L2
ENSG00000088035 ALG6 -410336 sc-eQTL 2.24e-03 -0.282 0.0911 0.434 CD4_CTL L2
ENSG00000116641 DOCK7 268853 sc-eQTL 7.41e-01 -0.027 0.0816 0.434 CD4_CTL L2
ENSG00000125703 ATG4C 173107 sc-eQTL 4.64e-01 0.0619 0.0843 0.434 CD4_CTL L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 6.03e-01 -0.047 0.0902 0.434 CD4_CTL L2
ENSG00000162607 USP1 520942 sc-eQTL 9.86e-01 -0.00156 0.0859 0.434 CD4_CTL L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 8.91e-01 -0.0117 0.0858 0.434 CD4_CTL L2
ENSG00000079739 PGM1 -636172 sc-eQTL 4.16e-02 -0.146 0.071 0.434 CD4_Naive L2
ENSG00000088035 ALG6 -410336 sc-eQTL 5.00e-01 -0.0525 0.0778 0.434 CD4_Naive L2
ENSG00000116641 DOCK7 268853 sc-eQTL 4.04e-01 0.0639 0.0764 0.434 CD4_Naive L2
ENSG00000125703 ATG4C 173107 sc-eQTL 4.01e-01 -0.0568 0.0675 0.434 CD4_Naive L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 5.22e-01 0.0529 0.0826 0.434 CD4_Naive L2
ENSG00000162607 USP1 520942 sc-eQTL 1.92e-01 0.0824 0.0629 0.434 CD4_Naive L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.00e-01 -0.0691 0.0819 0.434 CD4_Naive L2
ENSG00000079739 PGM1 -636172 sc-eQTL 9.13e-01 0.00803 0.0736 0.434 CD4_TCM L2
ENSG00000088035 ALG6 -410336 sc-eQTL 1.96e-01 0.111 0.0852 0.434 CD4_TCM L2
ENSG00000116641 DOCK7 268853 sc-eQTL 1.18e-01 0.118 0.0753 0.434 CD4_TCM L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.45e-01 -0.0697 0.0736 0.434 CD4_TCM L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 9.19e-01 0.00881 0.087 0.434 CD4_TCM L2
ENSG00000162607 USP1 520942 sc-eQTL 4.53e-01 0.0535 0.0712 0.434 CD4_TCM L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 6.06e-01 0.0434 0.0841 0.434 CD4_TCM L2
ENSG00000079739 PGM1 -636172 sc-eQTL 7.55e-01 -0.027 0.0866 0.434 CD4_TEM L2
ENSG00000088035 ALG6 -410336 sc-eQTL 9.94e-01 -0.000671 0.0871 0.434 CD4_TEM L2
ENSG00000116641 DOCK7 268853 sc-eQTL 9.12e-01 0.00937 0.0849 0.434 CD4_TEM L2
ENSG00000125703 ATG4C 173107 sc-eQTL 7.14e-01 -0.0302 0.0824 0.434 CD4_TEM L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 6.52e-01 0.0384 0.085 0.434 CD4_TEM L2
ENSG00000162607 USP1 520942 sc-eQTL 6.61e-01 -0.0354 0.0806 0.434 CD4_TEM L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 9.61e-01 0.00429 0.0882 0.434 CD4_TEM L2
ENSG00000079739 PGM1 -636172 sc-eQTL 3.25e-01 0.0777 0.0788 0.434 CD8_CTL L2
ENSG00000088035 ALG6 -410336 sc-eQTL 8.43e-02 -0.145 0.0834 0.434 CD8_CTL L2
ENSG00000116641 DOCK7 268853 sc-eQTL 1.31e-01 -0.12 0.0793 0.434 CD8_CTL L2
ENSG00000125703 ATG4C 173107 sc-eQTL 8.68e-01 0.0141 0.0849 0.434 CD8_CTL L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 4.31e-01 -0.0695 0.0881 0.434 CD8_CTL L2
ENSG00000162607 USP1 520942 sc-eQTL 3.43e-01 -0.075 0.0789 0.434 CD8_CTL L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 2.55e-01 0.103 0.0901 0.434 CD8_CTL L2
ENSG00000079739 PGM1 -636172 sc-eQTL 9.47e-01 -0.0054 0.0807 0.434 CD8_Naive L2
ENSG00000088035 ALG6 -410336 sc-eQTL 8.73e-01 0.0134 0.0835 0.434 CD8_Naive L2
ENSG00000116641 DOCK7 268853 sc-eQTL 7.59e-03 -0.229 0.0849 0.434 CD8_Naive L2
ENSG00000125703 ATG4C 173107 sc-eQTL 8.89e-01 0.0116 0.0829 0.434 CD8_Naive L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.84e-01 -0.0899 0.0837 0.434 CD8_Naive L2
ENSG00000162607 USP1 520942 sc-eQTL 3.88e-01 -0.0613 0.0708 0.434 CD8_Naive L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.16e-01 0.0288 0.0791 0.434 CD8_Naive L2
ENSG00000079739 PGM1 -636172 sc-eQTL 3.19e-01 0.0901 0.0903 0.424 CD8_TCM L2
ENSG00000088035 ALG6 -410336 sc-eQTL 9.33e-02 -0.153 0.091 0.424 CD8_TCM L2
ENSG00000116641 DOCK7 268853 sc-eQTL 8.08e-01 0.0218 0.0894 0.424 CD8_TCM L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.31e-01 0.089 0.0912 0.424 CD8_TCM L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 3.98e-01 0.0751 0.0887 0.424 CD8_TCM L2
ENSG00000162607 USP1 520942 sc-eQTL 2.32e-01 0.102 0.0852 0.424 CD8_TCM L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 3.48e-01 0.085 0.0904 0.424 CD8_TCM L2
ENSG00000079739 PGM1 -636172 sc-eQTL 8.11e-01 -0.0218 0.0907 0.427 CD8_TEM L2
ENSG00000088035 ALG6 -410336 sc-eQTL 6.84e-01 -0.0372 0.091 0.427 CD8_TEM L2
ENSG00000116641 DOCK7 268853 sc-eQTL 1.02e-01 -0.144 0.0877 0.427 CD8_TEM L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.16e-01 -0.0851 0.0846 0.427 CD8_TEM L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.04e-01 0.117 0.0915 0.427 CD8_TEM L2
ENSG00000162607 USP1 520942 sc-eQTL 3.41e-01 -0.0834 0.0874 0.427 CD8_TEM L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 2.52e-01 0.102 0.0888 0.427 CD8_TEM L2
ENSG00000079739 PGM1 -636172 sc-eQTL 4.04e-01 0.0705 0.0843 0.437 MAIT L2
ENSG00000088035 ALG6 -410336 sc-eQTL 2.71e-01 -0.092 0.0834 0.437 MAIT L2
ENSG00000116641 DOCK7 268853 sc-eQTL 4.47e-01 -0.061 0.08 0.437 MAIT L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.67e-01 -0.0762 0.0843 0.437 MAIT L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 1.37e-01 -0.126 0.0842 0.437 MAIT L2
ENSG00000162607 USP1 520942 sc-eQTL 3.89e-01 0.0723 0.0838 0.437 MAIT L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.31e-01 0.03 0.0871 0.437 MAIT L2
ENSG00000079739 PGM1 -636172 sc-eQTL 8.27e-01 -0.0184 0.084 0.436 NK_CD56bright L2
ENSG00000088035 ALG6 -410336 sc-eQTL 8.53e-01 -0.016 0.0861 0.436 NK_CD56bright L2
ENSG00000116641 DOCK7 268853 sc-eQTL 4.74e-01 0.0534 0.0745 0.436 NK_CD56bright L2
ENSG00000125703 ATG4C 173107 sc-eQTL 6.69e-01 -0.0357 0.0833 0.436 NK_CD56bright L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 1.92e-02 0.202 0.0856 0.436 NK_CD56bright L2
ENSG00000162607 USP1 520942 sc-eQTL 8.30e-01 0.0192 0.0895 0.436 NK_CD56bright L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.83e-01 0.0236 0.0856 0.436 NK_CD56bright L2
ENSG00000079739 PGM1 -636172 sc-eQTL 1.11e-01 0.104 0.0651 0.433 NK_CD56dim L2
ENSG00000088035 ALG6 -410336 sc-eQTL 8.49e-01 0.0158 0.0831 0.433 NK_CD56dim L2
ENSG00000116641 DOCK7 268853 sc-eQTL 1.23e-01 -0.111 0.0719 0.433 NK_CD56dim L2
ENSG00000125703 ATG4C 173107 sc-eQTL 6.01e-01 -0.0385 0.0734 0.433 NK_CD56dim L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 4.17e-01 -0.0679 0.0834 0.433 NK_CD56dim L2
ENSG00000162607 USP1 520942 sc-eQTL 6.22e-02 0.151 0.0803 0.433 NK_CD56dim L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 6.04e-01 0.0468 0.0902 0.433 NK_CD56dim L2
ENSG00000079739 PGM1 -636172 sc-eQTL 4.51e-01 0.0677 0.0897 0.436 NK_HLA L2
ENSG00000088035 ALG6 -410336 sc-eQTL 3.79e-01 -0.0819 0.0929 0.436 NK_HLA L2
ENSG00000116641 DOCK7 268853 sc-eQTL 7.83e-01 0.0196 0.0712 0.436 NK_HLA L2
ENSG00000125703 ATG4C 173107 sc-eQTL 3.01e-01 0.0856 0.0826 0.436 NK_HLA L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 5.30e-01 -0.0546 0.0869 0.436 NK_HLA L2
ENSG00000162607 USP1 520942 sc-eQTL 4.75e-01 0.065 0.0909 0.436 NK_HLA L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.31e-01 0.0653 0.0827 0.436 NK_HLA L2
ENSG00000079739 PGM1 -636172 sc-eQTL 5.24e-01 0.046 0.0721 0.433 NK_cytokine L2
ENSG00000088035 ALG6 -410336 sc-eQTL 3.41e-01 -0.0777 0.0814 0.433 NK_cytokine L2
ENSG00000116641 DOCK7 268853 sc-eQTL 9.30e-01 0.00669 0.0756 0.433 NK_cytokine L2
ENSG00000125703 ATG4C 173107 sc-eQTL 4.66e-01 0.0564 0.0772 0.433 NK_cytokine L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 1.72e-01 -0.109 0.0797 0.433 NK_cytokine L2
ENSG00000162607 USP1 520942 sc-eQTL 1.47e-01 0.122 0.0838 0.433 NK_cytokine L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 8.44e-01 -0.0168 0.0853 0.433 NK_cytokine L2
ENSG00000079739 PGM1 -636172 sc-eQTL 7.23e-01 0.0364 0.102 0.459 PB L2
ENSG00000088035 ALG6 -410336 sc-eQTL 5.13e-01 -0.0705 0.107 0.459 PB L2
ENSG00000116641 DOCK7 268853 sc-eQTL 8.82e-01 0.0171 0.115 0.459 PB L2
ENSG00000125703 ATG4C 173107 sc-eQTL 8.08e-01 0.0244 0.1 0.459 PB L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 9.28e-01 -0.00903 0.1 0.459 PB L2
ENSG00000162607 USP1 520942 sc-eQTL 3.15e-02 0.213 0.0977 0.459 PB L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 8.63e-01 -0.019 0.11 0.459 PB L2
ENSG00000079739 PGM1 -636172 sc-eQTL 3.57e-01 -0.0732 0.0793 0.433 Pro_T L2
ENSG00000088035 ALG6 -410336 sc-eQTL 4.93e-01 -0.0555 0.0807 0.433 Pro_T L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.62e-01 -0.0471 0.081 0.433 Pro_T L2
ENSG00000125703 ATG4C 173107 sc-eQTL 7.83e-01 0.0195 0.071 0.433 Pro_T L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.36e-01 -0.0844 0.071 0.433 Pro_T L2
ENSG00000162607 USP1 520942 sc-eQTL 1.08e-01 -0.0786 0.0487 0.433 Pro_T L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 1.88e-01 0.109 0.0824 0.433 Pro_T L2
ENSG00000079739 PGM1 -636172 sc-eQTL 1.64e-01 -0.118 0.0845 0.434 Treg L2
ENSG00000088035 ALG6 -410336 sc-eQTL 4.23e-01 -0.0728 0.0906 0.434 Treg L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.23e-01 0.0533 0.0833 0.434 Treg L2
ENSG00000125703 ATG4C 173107 sc-eQTL 2.71e-01 -0.0938 0.0849 0.434 Treg L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 5.17e-01 0.0578 0.089 0.434 Treg L2
ENSG00000162607 USP1 520942 sc-eQTL 4.85e-01 -0.0602 0.0861 0.434 Treg L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 1.44e-02 0.207 0.084 0.434 Treg L2
ENSG00000079739 PGM1 -636172 sc-eQTL 7.70e-02 -0.146 0.082 0.437 cDC L2
ENSG00000088035 ALG6 -410336 sc-eQTL 3.66e-01 -0.0759 0.0836 0.437 cDC L2
ENSG00000116641 DOCK7 268853 sc-eQTL 3.98e-02 -0.168 0.0813 0.437 cDC L2
ENSG00000125703 ATG4C 173107 sc-eQTL 6.11e-02 -0.133 0.0708 0.437 cDC L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 3.30e-01 -0.0883 0.0903 0.437 cDC L2
ENSG00000162607 USP1 520942 sc-eQTL 2.85e-01 0.0862 0.0804 0.437 cDC L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 6.50e-01 -0.0331 0.0727 0.437 cDC L2
ENSG00000079739 PGM1 -636172 sc-eQTL 6.24e-02 -0.145 0.0774 0.434 cMono_IL1B L2
ENSG00000088035 ALG6 -410336 sc-eQTL 4.28e-01 0.0619 0.078 0.434 cMono_IL1B L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.01e-01 -0.0554 0.0823 0.434 cMono_IL1B L2
ENSG00000125703 ATG4C 173107 sc-eQTL 2.81e-01 0.0625 0.0578 0.434 cMono_IL1B L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 1.45e-01 0.119 0.0816 0.434 cMono_IL1B L2
ENSG00000162607 USP1 520942 sc-eQTL 1.88e-01 0.0951 0.0721 0.434 cMono_IL1B L2
ENSG00000240563 L1TD1 762390 sc-eQTL 3.97e-01 0.0616 0.0726 0.434 cMono_IL1B L2
ENSG00000079739 PGM1 -636172 sc-eQTL 3.32e-01 -0.0848 0.0872 0.434 cMono_S100A L2
ENSG00000088035 ALG6 -410336 sc-eQTL 6.80e-01 -0.0365 0.0885 0.434 cMono_S100A L2
ENSG00000116641 DOCK7 268853 sc-eQTL 6.15e-01 0.0413 0.082 0.434 cMono_S100A L2
ENSG00000125703 ATG4C 173107 sc-eQTL 4.46e-01 0.0542 0.071 0.434 cMono_S100A L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 6.67e-01 0.0346 0.0801 0.434 cMono_S100A L2
ENSG00000162607 USP1 520942 sc-eQTL 8.02e-01 0.0207 0.0825 0.434 cMono_S100A L2
ENSG00000240563 L1TD1 762390 sc-eQTL 4.16e-02 0.139 0.068 0.434 cMono_S100A L2
ENSG00000079739 PGM1 -636172 sc-eQTL 7.07e-01 0.0378 0.1 0.442 gdT L2
ENSG00000088035 ALG6 -410336 sc-eQTL 6.72e-01 0.0454 0.107 0.442 gdT L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.53e-01 -0.0624 0.105 0.442 gdT L2
ENSG00000125703 ATG4C 173107 sc-eQTL 8.26e-01 0.0222 0.1 0.442 gdT L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 4.57e-01 -0.0794 0.106 0.442 gdT L2
ENSG00000162607 USP1 520942 sc-eQTL 3.67e-01 0.0911 0.101 0.442 gdT L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 7.56e-02 0.186 0.104 0.442 gdT L2
ENSG00000079739 PGM1 -636172 sc-eQTL 9.13e-01 -0.00948 0.0866 0.429 intMono L2
ENSG00000088035 ALG6 -410336 sc-eQTL 5.41e-01 0.0493 0.0806 0.429 intMono L2
ENSG00000116641 DOCK7 268853 sc-eQTL 9.73e-01 -0.00278 0.0824 0.429 intMono L2
ENSG00000125703 ATG4C 173107 sc-eQTL 9.24e-01 -0.0075 0.0787 0.429 intMono L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 9.09e-01 0.00997 0.0867 0.429 intMono L2
ENSG00000162607 USP1 520942 sc-eQTL 6.57e-01 0.0392 0.0881 0.429 intMono L2
ENSG00000240563 L1TD1 762390 sc-eQTL 6.20e-01 -0.0321 0.0648 0.429 intMono L2
ENSG00000079739 PGM1 -636172 sc-eQTL 9.32e-01 0.00669 0.0786 0.439 ncMono L2
ENSG00000088035 ALG6 -410336 sc-eQTL 1.55e-01 -0.123 0.0859 0.439 ncMono L2
ENSG00000116641 DOCK7 268853 sc-eQTL 5.11e-01 -0.0559 0.0849 0.439 ncMono L2
ENSG00000125703 ATG4C 173107 sc-eQTL 4.27e-01 -0.063 0.0792 0.439 ncMono L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 8.69e-01 0.0137 0.083 0.439 ncMono L2
ENSG00000162607 USP1 520942 sc-eQTL 9.02e-02 0.143 0.0842 0.439 ncMono L2
ENSG00000240563 L1TD1 762390 sc-eQTL 7.60e-01 -0.0184 0.0601 0.439 ncMono L2
ENSG00000079739 PGM1 -636172 sc-eQTL 6.33e-01 -0.0468 0.0977 0.432 pDC L2
ENSG00000088035 ALG6 -410336 sc-eQTL 5.55e-01 -0.0563 0.0951 0.432 pDC L2
ENSG00000116641 DOCK7 268853 sc-eQTL 2.81e-01 -0.105 0.0969 0.432 pDC L2
ENSG00000125703 ATG4C 173107 sc-eQTL 1.95e-01 -0.113 0.0868 0.432 pDC L2
ENSG00000142856 ITGB3BP -636482 sc-eQTL 7.05e-01 0.0371 0.0979 0.432 pDC L2
ENSG00000162607 USP1 520942 sc-eQTL 8.86e-01 0.0143 0.0998 0.432 pDC L2
ENSG00000203965 EFCAB7 -566133 sc-eQTL 1.84e-02 -0.203 0.0851 0.432 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -636172 sc-eQTL 6.94e-01 -0.0315 0.08 0.434 B_Memory LOneK1K
ENSG00000088035 ALG6 -410336 sc-eQTL 4.16e-01 -0.0719 0.0883 0.434 B_Memory LOneK1K
ENSG00000116641 DOCK7 268853 sc-eQTL 1.85e-01 0.102 0.0764 0.434 B_Memory LOneK1K
ENSG00000125703 ATG4C 173107 sc-eQTL 7.45e-01 -0.0202 0.062 0.434 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -636482 sc-eQTL 1.99e-02 0.189 0.0805 0.434 B_Memory LOneK1K
ENSG00000162607 USP1 520942 sc-eQTL 1.81e-01 0.106 0.0788 0.434 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -566133 sc-eQTL 9.91e-01 0.000993 0.085 0.434 B_Memory LOneK1K
ENSG00000079739 PGM1 -636172 sc-eQTL 5.83e-01 0.046 0.0837 0.434 B_Naive LOneK1K
ENSG00000088035 ALG6 -410336 sc-eQTL 2.94e-02 0.187 0.0853 0.434 B_Naive LOneK1K
ENSG00000116641 DOCK7 268853 sc-eQTL 2.40e-01 -0.0946 0.0803 0.434 B_Naive LOneK1K
ENSG00000125703 ATG4C 173107 sc-eQTL 3.75e-01 0.0546 0.0614 0.434 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -636482 sc-eQTL 5.09e-01 -0.0574 0.0868 0.434 B_Naive LOneK1K
ENSG00000162607 USP1 520942 sc-eQTL 1.88e-01 0.0982 0.0744 0.434 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -566133 sc-eQTL 9.21e-01 0.0087 0.0874 0.434 B_Naive LOneK1K
ENSG00000079739 PGM1 -636172 sc-eQTL 6.60e-02 -0.148 0.0799 0.434 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -410336 sc-eQTL 8.09e-01 0.0188 0.078 0.434 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 268853 sc-eQTL 6.23e-01 -0.0387 0.0785 0.434 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 173107 sc-eQTL 1.93e-01 0.0707 0.0541 0.434 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.57e-01 0.0909 0.0801 0.434 CD14_Mono LOneK1K
ENSG00000162607 USP1 520942 sc-eQTL 5.55e-01 0.0405 0.0685 0.434 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 762390 sc-eQTL 2.39e-01 0.0876 0.0741 0.434 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -636172 sc-eQTL 3.06e-01 0.0773 0.0754 0.431 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -410336 sc-eQTL 3.63e-01 -0.078 0.0856 0.431 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 268853 sc-eQTL 3.85e-01 -0.0738 0.0847 0.431 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 173107 sc-eQTL 6.85e-01 -0.0294 0.0723 0.431 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -636482 sc-eQTL 8.63e-01 0.0145 0.084 0.431 CD16_Mono LOneK1K
ENSG00000162607 USP1 520942 sc-eQTL 2.43e-01 0.0922 0.0787 0.431 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 762390 sc-eQTL 3.63e-01 -0.049 0.0538 0.431 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -636172 sc-eQTL 1.15e-01 0.101 0.0639 0.433 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -410336 sc-eQTL 4.07e-01 -0.0641 0.0771 0.433 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 268853 sc-eQTL 6.78e-01 -0.0288 0.0692 0.433 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 173107 sc-eQTL 7.72e-01 0.02 0.069 0.433 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -636482 sc-eQTL 2.94e-01 -0.0859 0.0816 0.433 NK_CD56dim LOneK1K
ENSG00000162607 USP1 520942 sc-eQTL 1.18e-02 0.186 0.0732 0.433 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -566133 sc-eQTL 4.75e-01 0.0647 0.0903 0.433 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 173107 eQTL 0.0442 -0.0335 0.0166 0.0 0.0 0.447

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -410336 9.83e-07 6.09e-07 1.46e-07 3.92e-07 1.07e-07 2.24e-07 5.82e-07 1.65e-07 5.49e-07 2.72e-07 8.08e-07 4.24e-07 8.6e-07 1.48e-07 2.86e-07 2.89e-07 3.93e-07 4.22e-07 2.57e-07 1.82e-07 2.52e-07 4.66e-07 4e-07 2.27e-07 8.62e-07 2.71e-07 3.48e-07 2.73e-07 4.63e-07 6.47e-07 3.38e-07 6.77e-08 5.86e-08 1.77e-07 3.38e-07 1.48e-07 1.02e-07 9.71e-08 6.41e-08 2.28e-08 1.14e-07 6.15e-07 4.47e-08 1.97e-08 1.92e-07 1.39e-08 1.32e-07 1.77e-08 5.86e-08