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Genes within 1Mb (chr1:62953353:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -640058 sc-eQTL 6.19e-01 0.0356 0.0716 0.434 B L1
ENSG00000088035 ALG6 -414222 sc-eQTL 4.06e-01 0.0617 0.0741 0.434 B L1
ENSG00000116641 DOCK7 264967 sc-eQTL 2.58e-01 -0.0838 0.0739 0.434 B L1
ENSG00000125703 ATG4C 169221 sc-eQTL 9.35e-01 0.00424 0.0516 0.434 B L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 7.82e-01 0.0227 0.082 0.434 B L1
ENSG00000162607 USP1 517056 sc-eQTL 2.63e-02 0.157 0.0704 0.434 B L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.61e-01 -0.0256 0.084 0.434 B L1
ENSG00000079739 PGM1 -640058 sc-eQTL 9.70e-02 -0.105 0.0628 0.434 CD4T L1
ENSG00000088035 ALG6 -414222 sc-eQTL 4.30e-01 -0.0551 0.0696 0.434 CD4T L1
ENSG00000116641 DOCK7 264967 sc-eQTL 1.72e-01 0.0962 0.0703 0.434 CD4T L1
ENSG00000125703 ATG4C 169221 sc-eQTL 3.29e-01 -0.0556 0.0569 0.434 CD4T L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 7.43e-01 0.0266 0.0809 0.434 CD4T L1
ENSG00000162607 USP1 517056 sc-eQTL 1.78e-01 0.0745 0.0551 0.434 CD4T L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 8.39e-01 -0.0148 0.0726 0.434 CD4T L1
ENSG00000079739 PGM1 -640058 sc-eQTL 4.15e-01 0.0567 0.0694 0.434 CD8T L1
ENSG00000088035 ALG6 -414222 sc-eQTL 6.54e-01 -0.0343 0.0766 0.434 CD8T L1
ENSG00000116641 DOCK7 264967 sc-eQTL 1.77e-02 -0.183 0.0766 0.434 CD8T L1
ENSG00000125703 ATG4C 169221 sc-eQTL 9.95e-01 -0.000495 0.0737 0.434 CD8T L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.19e-01 -0.101 0.0821 0.434 CD8T L1
ENSG00000162607 USP1 517056 sc-eQTL 4.27e-01 -0.0511 0.0641 0.434 CD8T L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 3.40e-02 0.173 0.0813 0.434 CD8T L1
ENSG00000079739 PGM1 -640058 sc-eQTL 3.72e-02 -0.159 0.0757 0.432 DC L1
ENSG00000088035 ALG6 -414222 sc-eQTL 1.87e-01 -0.104 0.0786 0.432 DC L1
ENSG00000116641 DOCK7 264967 sc-eQTL 9.51e-03 -0.208 0.0796 0.432 DC L1
ENSG00000125703 ATG4C 169221 sc-eQTL 2.34e-03 -0.191 0.0619 0.432 DC L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 4.13e-01 -0.0725 0.0884 0.432 DC L1
ENSG00000162607 USP1 517056 sc-eQTL 8.33e-01 0.0163 0.0773 0.432 DC L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 1.91e-03 -0.237 0.0752 0.432 DC L1
ENSG00000079739 PGM1 -640058 sc-eQTL 1.88e-01 -0.0996 0.0755 0.434 Mono L1
ENSG00000088035 ALG6 -414222 sc-eQTL 9.97e-01 0.000307 0.0791 0.434 Mono L1
ENSG00000116641 DOCK7 264967 sc-eQTL 8.40e-01 -0.0154 0.0765 0.434 Mono L1
ENSG00000125703 ATG4C 169221 sc-eQTL 3.50e-01 0.0483 0.0516 0.434 Mono L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 3.77e-01 0.0722 0.0815 0.434 Mono L1
ENSG00000162607 USP1 517056 sc-eQTL 2.97e-01 0.07 0.0669 0.434 Mono L1
ENSG00000240563 L1TD1 758504 sc-eQTL 9.02e-01 0.00772 0.0626 0.434 Mono L1
ENSG00000079739 PGM1 -640058 sc-eQTL 1.40e-01 0.0933 0.063 0.433 NK L1
ENSG00000088035 ALG6 -414222 sc-eQTL 2.64e-01 -0.083 0.0741 0.433 NK L1
ENSG00000116641 DOCK7 264967 sc-eQTL 9.13e-01 -0.00666 0.0612 0.433 NK L1
ENSG00000125703 ATG4C 169221 sc-eQTL 9.55e-01 -0.00375 0.0657 0.433 NK L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 5.46e-01 -0.0494 0.0816 0.433 NK L1
ENSG00000162607 USP1 517056 sc-eQTL 1.61e-02 0.175 0.072 0.433 NK L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 2.94e-01 0.0931 0.0885 0.433 NK L1
ENSG00000079739 PGM1 -640058 sc-eQTL 6.64e-01 0.0319 0.0733 0.434 Other_T L1
ENSG00000088035 ALG6 -414222 sc-eQTL 9.94e-01 0.000511 0.0737 0.434 Other_T L1
ENSG00000116641 DOCK7 264967 sc-eQTL 3.32e-01 -0.073 0.0751 0.434 Other_T L1
ENSG00000125703 ATG4C 169221 sc-eQTL 3.92e-01 -0.0557 0.065 0.434 Other_T L1
ENSG00000142856 ITGB3BP -640368 sc-eQTL 3.04e-02 -0.124 0.0571 0.434 Other_T L1
ENSG00000162607 USP1 517056 sc-eQTL 5.94e-02 0.0941 0.0496 0.434 Other_T L1
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.39e-01 0.0691 0.089 0.434 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -640058 sc-eQTL 8.12e-01 -0.0238 0.1 0.444 B_Activated L2
ENSG00000088035 ALG6 -414222 sc-eQTL 1.42e-01 -0.14 0.0953 0.444 B_Activated L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.35e-01 0.0554 0.0892 0.444 B_Activated L2
ENSG00000125703 ATG4C 169221 sc-eQTL 2.14e-01 -0.117 0.0935 0.444 B_Activated L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 7.45e-01 -0.0299 0.0917 0.444 B_Activated L2
ENSG00000162607 USP1 517056 sc-eQTL 2.69e-01 -0.11 0.0991 0.444 B_Activated L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.79e-02 0.171 0.0859 0.444 B_Activated L2
ENSG00000079739 PGM1 -640058 sc-eQTL 4.61e-01 -0.064 0.0866 0.433 B_Intermediate L2
ENSG00000088035 ALG6 -414222 sc-eQTL 9.05e-01 -0.0106 0.0881 0.433 B_Intermediate L2
ENSG00000116641 DOCK7 264967 sc-eQTL 9.26e-01 -0.00779 0.0841 0.433 B_Intermediate L2
ENSG00000125703 ATG4C 169221 sc-eQTL 9.22e-01 0.00694 0.0712 0.433 B_Intermediate L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.18e-01 0.104 0.0845 0.433 B_Intermediate L2
ENSG00000162607 USP1 517056 sc-eQTL 8.57e-01 -0.0153 0.0847 0.433 B_Intermediate L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 8.72e-01 0.0136 0.084 0.433 B_Intermediate L2
ENSG00000079739 PGM1 -640058 sc-eQTL 9.87e-01 -0.00145 0.0858 0.431 B_Memory L2
ENSG00000088035 ALG6 -414222 sc-eQTL 8.16e-01 -0.0203 0.0872 0.431 B_Memory L2
ENSG00000116641 DOCK7 264967 sc-eQTL 3.19e-01 0.0816 0.0816 0.431 B_Memory L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.83e-01 -0.0678 0.0776 0.431 B_Memory L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 7.86e-02 0.156 0.0883 0.431 B_Memory L2
ENSG00000162607 USP1 517056 sc-eQTL 2.49e-02 0.2 0.0887 0.431 B_Memory L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.56e-01 -0.0659 0.0882 0.431 B_Memory L2
ENSG00000079739 PGM1 -640058 sc-eQTL 3.34e-01 0.0831 0.0859 0.434 B_Naive1 L2
ENSG00000088035 ALG6 -414222 sc-eQTL 1.53e-02 0.208 0.0852 0.434 B_Naive1 L2
ENSG00000116641 DOCK7 264967 sc-eQTL 4.76e-01 -0.059 0.0827 0.434 B_Naive1 L2
ENSG00000125703 ATG4C 169221 sc-eQTL 7.03e-01 0.0244 0.0637 0.434 B_Naive1 L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 3.92e-01 -0.0724 0.0844 0.434 B_Naive1 L2
ENSG00000162607 USP1 517056 sc-eQTL 4.25e-01 0.0593 0.0743 0.434 B_Naive1 L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.87e-01 -0.0244 0.0902 0.434 B_Naive1 L2
ENSG00000079739 PGM1 -640058 sc-eQTL 5.68e-01 -0.049 0.0857 0.431 B_Naive2 L2
ENSG00000088035 ALG6 -414222 sc-eQTL 5.98e-01 0.0472 0.0893 0.431 B_Naive2 L2
ENSG00000116641 DOCK7 264967 sc-eQTL 8.61e-01 0.015 0.0859 0.431 B_Naive2 L2
ENSG00000125703 ATG4C 169221 sc-eQTL 5.43e-01 0.0503 0.0827 0.431 B_Naive2 L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.74e-01 0.0981 0.0895 0.431 B_Naive2 L2
ENSG00000162607 USP1 517056 sc-eQTL 9.69e-01 0.00334 0.0854 0.431 B_Naive2 L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 9.74e-01 -0.00296 0.0893 0.431 B_Naive2 L2
ENSG00000079739 PGM1 -640058 sc-eQTL 2.20e-01 0.108 0.088 0.434 CD4_CTL L2
ENSG00000088035 ALG6 -414222 sc-eQTL 2.24e-03 -0.282 0.0911 0.434 CD4_CTL L2
ENSG00000116641 DOCK7 264967 sc-eQTL 7.41e-01 -0.027 0.0816 0.434 CD4_CTL L2
ENSG00000125703 ATG4C 169221 sc-eQTL 4.64e-01 0.0619 0.0843 0.434 CD4_CTL L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 6.03e-01 -0.047 0.0902 0.434 CD4_CTL L2
ENSG00000162607 USP1 517056 sc-eQTL 9.86e-01 -0.00156 0.0859 0.434 CD4_CTL L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 8.91e-01 -0.0117 0.0858 0.434 CD4_CTL L2
ENSG00000079739 PGM1 -640058 sc-eQTL 4.16e-02 -0.146 0.071 0.434 CD4_Naive L2
ENSG00000088035 ALG6 -414222 sc-eQTL 5.00e-01 -0.0525 0.0778 0.434 CD4_Naive L2
ENSG00000116641 DOCK7 264967 sc-eQTL 4.04e-01 0.0639 0.0764 0.434 CD4_Naive L2
ENSG00000125703 ATG4C 169221 sc-eQTL 4.01e-01 -0.0568 0.0675 0.434 CD4_Naive L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 5.22e-01 0.0529 0.0826 0.434 CD4_Naive L2
ENSG00000162607 USP1 517056 sc-eQTL 1.92e-01 0.0824 0.0629 0.434 CD4_Naive L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.00e-01 -0.0691 0.0819 0.434 CD4_Naive L2
ENSG00000079739 PGM1 -640058 sc-eQTL 9.13e-01 0.00803 0.0736 0.434 CD4_TCM L2
ENSG00000088035 ALG6 -414222 sc-eQTL 1.96e-01 0.111 0.0852 0.434 CD4_TCM L2
ENSG00000116641 DOCK7 264967 sc-eQTL 1.18e-01 0.118 0.0753 0.434 CD4_TCM L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.45e-01 -0.0697 0.0736 0.434 CD4_TCM L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 9.19e-01 0.00881 0.087 0.434 CD4_TCM L2
ENSG00000162607 USP1 517056 sc-eQTL 4.53e-01 0.0535 0.0712 0.434 CD4_TCM L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 6.06e-01 0.0434 0.0841 0.434 CD4_TCM L2
ENSG00000079739 PGM1 -640058 sc-eQTL 7.55e-01 -0.027 0.0866 0.434 CD4_TEM L2
ENSG00000088035 ALG6 -414222 sc-eQTL 9.94e-01 -0.000671 0.0871 0.434 CD4_TEM L2
ENSG00000116641 DOCK7 264967 sc-eQTL 9.12e-01 0.00937 0.0849 0.434 CD4_TEM L2
ENSG00000125703 ATG4C 169221 sc-eQTL 7.14e-01 -0.0302 0.0824 0.434 CD4_TEM L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 6.52e-01 0.0384 0.085 0.434 CD4_TEM L2
ENSG00000162607 USP1 517056 sc-eQTL 6.61e-01 -0.0354 0.0806 0.434 CD4_TEM L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 9.61e-01 0.00429 0.0882 0.434 CD4_TEM L2
ENSG00000079739 PGM1 -640058 sc-eQTL 3.25e-01 0.0777 0.0788 0.434 CD8_CTL L2
ENSG00000088035 ALG6 -414222 sc-eQTL 8.43e-02 -0.145 0.0834 0.434 CD8_CTL L2
ENSG00000116641 DOCK7 264967 sc-eQTL 1.31e-01 -0.12 0.0793 0.434 CD8_CTL L2
ENSG00000125703 ATG4C 169221 sc-eQTL 8.68e-01 0.0141 0.0849 0.434 CD8_CTL L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 4.31e-01 -0.0695 0.0881 0.434 CD8_CTL L2
ENSG00000162607 USP1 517056 sc-eQTL 3.43e-01 -0.075 0.0789 0.434 CD8_CTL L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 2.55e-01 0.103 0.0901 0.434 CD8_CTL L2
ENSG00000079739 PGM1 -640058 sc-eQTL 9.47e-01 -0.0054 0.0807 0.434 CD8_Naive L2
ENSG00000088035 ALG6 -414222 sc-eQTL 8.73e-01 0.0134 0.0835 0.434 CD8_Naive L2
ENSG00000116641 DOCK7 264967 sc-eQTL 7.59e-03 -0.229 0.0849 0.434 CD8_Naive L2
ENSG00000125703 ATG4C 169221 sc-eQTL 8.89e-01 0.0116 0.0829 0.434 CD8_Naive L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.84e-01 -0.0899 0.0837 0.434 CD8_Naive L2
ENSG00000162607 USP1 517056 sc-eQTL 3.88e-01 -0.0613 0.0708 0.434 CD8_Naive L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.16e-01 0.0288 0.0791 0.434 CD8_Naive L2
ENSG00000079739 PGM1 -640058 sc-eQTL 3.19e-01 0.0901 0.0903 0.424 CD8_TCM L2
ENSG00000088035 ALG6 -414222 sc-eQTL 9.33e-02 -0.153 0.091 0.424 CD8_TCM L2
ENSG00000116641 DOCK7 264967 sc-eQTL 8.08e-01 0.0218 0.0894 0.424 CD8_TCM L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.31e-01 0.089 0.0912 0.424 CD8_TCM L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 3.98e-01 0.0751 0.0887 0.424 CD8_TCM L2
ENSG00000162607 USP1 517056 sc-eQTL 2.32e-01 0.102 0.0852 0.424 CD8_TCM L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 3.48e-01 0.085 0.0904 0.424 CD8_TCM L2
ENSG00000079739 PGM1 -640058 sc-eQTL 8.11e-01 -0.0218 0.0907 0.427 CD8_TEM L2
ENSG00000088035 ALG6 -414222 sc-eQTL 6.84e-01 -0.0372 0.091 0.427 CD8_TEM L2
ENSG00000116641 DOCK7 264967 sc-eQTL 1.02e-01 -0.144 0.0877 0.427 CD8_TEM L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.16e-01 -0.0851 0.0846 0.427 CD8_TEM L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.04e-01 0.117 0.0915 0.427 CD8_TEM L2
ENSG00000162607 USP1 517056 sc-eQTL 3.41e-01 -0.0834 0.0874 0.427 CD8_TEM L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 2.52e-01 0.102 0.0888 0.427 CD8_TEM L2
ENSG00000079739 PGM1 -640058 sc-eQTL 4.04e-01 0.0705 0.0843 0.437 MAIT L2
ENSG00000088035 ALG6 -414222 sc-eQTL 2.71e-01 -0.092 0.0834 0.437 MAIT L2
ENSG00000116641 DOCK7 264967 sc-eQTL 4.47e-01 -0.061 0.08 0.437 MAIT L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.67e-01 -0.0762 0.0843 0.437 MAIT L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 1.37e-01 -0.126 0.0842 0.437 MAIT L2
ENSG00000162607 USP1 517056 sc-eQTL 3.89e-01 0.0723 0.0838 0.437 MAIT L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.31e-01 0.03 0.0871 0.437 MAIT L2
ENSG00000079739 PGM1 -640058 sc-eQTL 8.27e-01 -0.0184 0.084 0.436 NK_CD56bright L2
ENSG00000088035 ALG6 -414222 sc-eQTL 8.53e-01 -0.016 0.0861 0.436 NK_CD56bright L2
ENSG00000116641 DOCK7 264967 sc-eQTL 4.74e-01 0.0534 0.0745 0.436 NK_CD56bright L2
ENSG00000125703 ATG4C 169221 sc-eQTL 6.69e-01 -0.0357 0.0833 0.436 NK_CD56bright L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 1.92e-02 0.202 0.0856 0.436 NK_CD56bright L2
ENSG00000162607 USP1 517056 sc-eQTL 8.30e-01 0.0192 0.0895 0.436 NK_CD56bright L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.83e-01 0.0236 0.0856 0.436 NK_CD56bright L2
ENSG00000079739 PGM1 -640058 sc-eQTL 1.11e-01 0.104 0.0651 0.433 NK_CD56dim L2
ENSG00000088035 ALG6 -414222 sc-eQTL 8.49e-01 0.0158 0.0831 0.433 NK_CD56dim L2
ENSG00000116641 DOCK7 264967 sc-eQTL 1.23e-01 -0.111 0.0719 0.433 NK_CD56dim L2
ENSG00000125703 ATG4C 169221 sc-eQTL 6.01e-01 -0.0385 0.0734 0.433 NK_CD56dim L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 4.17e-01 -0.0679 0.0834 0.433 NK_CD56dim L2
ENSG00000162607 USP1 517056 sc-eQTL 6.22e-02 0.151 0.0803 0.433 NK_CD56dim L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 6.04e-01 0.0468 0.0902 0.433 NK_CD56dim L2
ENSG00000079739 PGM1 -640058 sc-eQTL 4.51e-01 0.0677 0.0897 0.436 NK_HLA L2
ENSG00000088035 ALG6 -414222 sc-eQTL 3.79e-01 -0.0819 0.0929 0.436 NK_HLA L2
ENSG00000116641 DOCK7 264967 sc-eQTL 7.83e-01 0.0196 0.0712 0.436 NK_HLA L2
ENSG00000125703 ATG4C 169221 sc-eQTL 3.01e-01 0.0856 0.0826 0.436 NK_HLA L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 5.30e-01 -0.0546 0.0869 0.436 NK_HLA L2
ENSG00000162607 USP1 517056 sc-eQTL 4.75e-01 0.065 0.0909 0.436 NK_HLA L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.31e-01 0.0653 0.0827 0.436 NK_HLA L2
ENSG00000079739 PGM1 -640058 sc-eQTL 5.24e-01 0.046 0.0721 0.433 NK_cytokine L2
ENSG00000088035 ALG6 -414222 sc-eQTL 3.41e-01 -0.0777 0.0814 0.433 NK_cytokine L2
ENSG00000116641 DOCK7 264967 sc-eQTL 9.30e-01 0.00669 0.0756 0.433 NK_cytokine L2
ENSG00000125703 ATG4C 169221 sc-eQTL 4.66e-01 0.0564 0.0772 0.433 NK_cytokine L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 1.72e-01 -0.109 0.0797 0.433 NK_cytokine L2
ENSG00000162607 USP1 517056 sc-eQTL 1.47e-01 0.122 0.0838 0.433 NK_cytokine L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 8.44e-01 -0.0168 0.0853 0.433 NK_cytokine L2
ENSG00000079739 PGM1 -640058 sc-eQTL 7.23e-01 0.0364 0.102 0.459 PB L2
ENSG00000088035 ALG6 -414222 sc-eQTL 5.13e-01 -0.0705 0.107 0.459 PB L2
ENSG00000116641 DOCK7 264967 sc-eQTL 8.82e-01 0.0171 0.115 0.459 PB L2
ENSG00000125703 ATG4C 169221 sc-eQTL 8.08e-01 0.0244 0.1 0.459 PB L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 9.28e-01 -0.00903 0.1 0.459 PB L2
ENSG00000162607 USP1 517056 sc-eQTL 3.15e-02 0.213 0.0977 0.459 PB L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 8.63e-01 -0.019 0.11 0.459 PB L2
ENSG00000079739 PGM1 -640058 sc-eQTL 3.57e-01 -0.0732 0.0793 0.433 Pro_T L2
ENSG00000088035 ALG6 -414222 sc-eQTL 4.93e-01 -0.0555 0.0807 0.433 Pro_T L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.62e-01 -0.0471 0.081 0.433 Pro_T L2
ENSG00000125703 ATG4C 169221 sc-eQTL 7.83e-01 0.0195 0.071 0.433 Pro_T L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.36e-01 -0.0844 0.071 0.433 Pro_T L2
ENSG00000162607 USP1 517056 sc-eQTL 1.08e-01 -0.0786 0.0487 0.433 Pro_T L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 1.88e-01 0.109 0.0824 0.433 Pro_T L2
ENSG00000079739 PGM1 -640058 sc-eQTL 1.64e-01 -0.118 0.0845 0.434 Treg L2
ENSG00000088035 ALG6 -414222 sc-eQTL 4.23e-01 -0.0728 0.0906 0.434 Treg L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.23e-01 0.0533 0.0833 0.434 Treg L2
ENSG00000125703 ATG4C 169221 sc-eQTL 2.71e-01 -0.0938 0.0849 0.434 Treg L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 5.17e-01 0.0578 0.089 0.434 Treg L2
ENSG00000162607 USP1 517056 sc-eQTL 4.85e-01 -0.0602 0.0861 0.434 Treg L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 1.44e-02 0.207 0.084 0.434 Treg L2
ENSG00000079739 PGM1 -640058 sc-eQTL 7.70e-02 -0.146 0.082 0.437 cDC L2
ENSG00000088035 ALG6 -414222 sc-eQTL 3.66e-01 -0.0759 0.0836 0.437 cDC L2
ENSG00000116641 DOCK7 264967 sc-eQTL 3.98e-02 -0.168 0.0813 0.437 cDC L2
ENSG00000125703 ATG4C 169221 sc-eQTL 6.11e-02 -0.133 0.0708 0.437 cDC L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 3.30e-01 -0.0883 0.0903 0.437 cDC L2
ENSG00000162607 USP1 517056 sc-eQTL 2.85e-01 0.0862 0.0804 0.437 cDC L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 6.50e-01 -0.0331 0.0727 0.437 cDC L2
ENSG00000079739 PGM1 -640058 sc-eQTL 6.24e-02 -0.145 0.0774 0.434 cMono_IL1B L2
ENSG00000088035 ALG6 -414222 sc-eQTL 4.28e-01 0.0619 0.078 0.434 cMono_IL1B L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.01e-01 -0.0554 0.0823 0.434 cMono_IL1B L2
ENSG00000125703 ATG4C 169221 sc-eQTL 2.81e-01 0.0625 0.0578 0.434 cMono_IL1B L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 1.45e-01 0.119 0.0816 0.434 cMono_IL1B L2
ENSG00000162607 USP1 517056 sc-eQTL 1.88e-01 0.0951 0.0721 0.434 cMono_IL1B L2
ENSG00000240563 L1TD1 758504 sc-eQTL 3.97e-01 0.0616 0.0726 0.434 cMono_IL1B L2
ENSG00000079739 PGM1 -640058 sc-eQTL 3.32e-01 -0.0848 0.0872 0.434 cMono_S100A L2
ENSG00000088035 ALG6 -414222 sc-eQTL 6.80e-01 -0.0365 0.0885 0.434 cMono_S100A L2
ENSG00000116641 DOCK7 264967 sc-eQTL 6.15e-01 0.0413 0.082 0.434 cMono_S100A L2
ENSG00000125703 ATG4C 169221 sc-eQTL 4.46e-01 0.0542 0.071 0.434 cMono_S100A L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 6.67e-01 0.0346 0.0801 0.434 cMono_S100A L2
ENSG00000162607 USP1 517056 sc-eQTL 8.02e-01 0.0207 0.0825 0.434 cMono_S100A L2
ENSG00000240563 L1TD1 758504 sc-eQTL 4.16e-02 0.139 0.068 0.434 cMono_S100A L2
ENSG00000079739 PGM1 -640058 sc-eQTL 7.07e-01 0.0378 0.1 0.442 gdT L2
ENSG00000088035 ALG6 -414222 sc-eQTL 6.72e-01 0.0454 0.107 0.442 gdT L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.53e-01 -0.0624 0.105 0.442 gdT L2
ENSG00000125703 ATG4C 169221 sc-eQTL 8.26e-01 0.0222 0.1 0.442 gdT L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 4.57e-01 -0.0794 0.106 0.442 gdT L2
ENSG00000162607 USP1 517056 sc-eQTL 3.67e-01 0.0911 0.101 0.442 gdT L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 7.56e-02 0.186 0.104 0.442 gdT L2
ENSG00000079739 PGM1 -640058 sc-eQTL 9.13e-01 -0.00948 0.0866 0.429 intMono L2
ENSG00000088035 ALG6 -414222 sc-eQTL 5.41e-01 0.0493 0.0806 0.429 intMono L2
ENSG00000116641 DOCK7 264967 sc-eQTL 9.73e-01 -0.00278 0.0824 0.429 intMono L2
ENSG00000125703 ATG4C 169221 sc-eQTL 9.24e-01 -0.0075 0.0787 0.429 intMono L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 9.09e-01 0.00997 0.0867 0.429 intMono L2
ENSG00000162607 USP1 517056 sc-eQTL 6.57e-01 0.0392 0.0881 0.429 intMono L2
ENSG00000240563 L1TD1 758504 sc-eQTL 6.20e-01 -0.0321 0.0648 0.429 intMono L2
ENSG00000079739 PGM1 -640058 sc-eQTL 9.32e-01 0.00669 0.0786 0.439 ncMono L2
ENSG00000088035 ALG6 -414222 sc-eQTL 1.55e-01 -0.123 0.0859 0.439 ncMono L2
ENSG00000116641 DOCK7 264967 sc-eQTL 5.11e-01 -0.0559 0.0849 0.439 ncMono L2
ENSG00000125703 ATG4C 169221 sc-eQTL 4.27e-01 -0.063 0.0792 0.439 ncMono L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 8.69e-01 0.0137 0.083 0.439 ncMono L2
ENSG00000162607 USP1 517056 sc-eQTL 9.02e-02 0.143 0.0842 0.439 ncMono L2
ENSG00000240563 L1TD1 758504 sc-eQTL 7.60e-01 -0.0184 0.0601 0.439 ncMono L2
ENSG00000079739 PGM1 -640058 sc-eQTL 6.33e-01 -0.0468 0.0977 0.432 pDC L2
ENSG00000088035 ALG6 -414222 sc-eQTL 5.55e-01 -0.0563 0.0951 0.432 pDC L2
ENSG00000116641 DOCK7 264967 sc-eQTL 2.81e-01 -0.105 0.0969 0.432 pDC L2
ENSG00000125703 ATG4C 169221 sc-eQTL 1.95e-01 -0.113 0.0868 0.432 pDC L2
ENSG00000142856 ITGB3BP -640368 sc-eQTL 7.05e-01 0.0371 0.0979 0.432 pDC L2
ENSG00000162607 USP1 517056 sc-eQTL 8.86e-01 0.0143 0.0998 0.432 pDC L2
ENSG00000203965 EFCAB7 -570019 sc-eQTL 1.84e-02 -0.203 0.0851 0.432 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -640058 sc-eQTL 6.94e-01 -0.0315 0.08 0.434 B_Memory LOneK1K
ENSG00000088035 ALG6 -414222 sc-eQTL 4.16e-01 -0.0719 0.0883 0.434 B_Memory LOneK1K
ENSG00000116641 DOCK7 264967 sc-eQTL 1.85e-01 0.102 0.0764 0.434 B_Memory LOneK1K
ENSG00000125703 ATG4C 169221 sc-eQTL 7.45e-01 -0.0202 0.062 0.434 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -640368 sc-eQTL 1.99e-02 0.189 0.0805 0.434 B_Memory LOneK1K
ENSG00000162607 USP1 517056 sc-eQTL 1.81e-01 0.106 0.0788 0.434 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -570019 sc-eQTL 9.91e-01 0.000993 0.085 0.434 B_Memory LOneK1K
ENSG00000079739 PGM1 -640058 sc-eQTL 5.83e-01 0.046 0.0837 0.434 B_Naive LOneK1K
ENSG00000088035 ALG6 -414222 sc-eQTL 2.94e-02 0.187 0.0853 0.434 B_Naive LOneK1K
ENSG00000116641 DOCK7 264967 sc-eQTL 2.40e-01 -0.0946 0.0803 0.434 B_Naive LOneK1K
ENSG00000125703 ATG4C 169221 sc-eQTL 3.75e-01 0.0546 0.0614 0.434 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -640368 sc-eQTL 5.09e-01 -0.0574 0.0868 0.434 B_Naive LOneK1K
ENSG00000162607 USP1 517056 sc-eQTL 1.88e-01 0.0982 0.0744 0.434 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -570019 sc-eQTL 9.21e-01 0.0087 0.0874 0.434 B_Naive LOneK1K
ENSG00000079739 PGM1 -640058 sc-eQTL 6.60e-02 -0.148 0.0799 0.434 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -414222 sc-eQTL 8.09e-01 0.0188 0.078 0.434 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 264967 sc-eQTL 6.23e-01 -0.0387 0.0785 0.434 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 169221 sc-eQTL 1.93e-01 0.0707 0.0541 0.434 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.57e-01 0.0909 0.0801 0.434 CD14_Mono LOneK1K
ENSG00000162607 USP1 517056 sc-eQTL 5.55e-01 0.0405 0.0685 0.434 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 758504 sc-eQTL 2.39e-01 0.0876 0.0741 0.434 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -640058 sc-eQTL 3.06e-01 0.0773 0.0754 0.431 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -414222 sc-eQTL 3.63e-01 -0.078 0.0856 0.431 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 264967 sc-eQTL 3.85e-01 -0.0738 0.0847 0.431 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 169221 sc-eQTL 6.85e-01 -0.0294 0.0723 0.431 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -640368 sc-eQTL 8.63e-01 0.0145 0.084 0.431 CD16_Mono LOneK1K
ENSG00000162607 USP1 517056 sc-eQTL 2.43e-01 0.0922 0.0787 0.431 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 758504 sc-eQTL 3.63e-01 -0.049 0.0538 0.431 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -640058 sc-eQTL 1.15e-01 0.101 0.0639 0.433 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -414222 sc-eQTL 4.07e-01 -0.0641 0.0771 0.433 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 264967 sc-eQTL 6.78e-01 -0.0288 0.0692 0.433 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 169221 sc-eQTL 7.72e-01 0.02 0.069 0.433 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -640368 sc-eQTL 2.94e-01 -0.0859 0.0816 0.433 NK_CD56dim LOneK1K
ENSG00000162607 USP1 517056 sc-eQTL 1.18e-02 0.186 0.0732 0.433 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -570019 sc-eQTL 4.75e-01 0.0647 0.0903 0.433 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 169221 eQTL 0.0485 -0.0327 0.0166 0.0 0.0 0.446

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000088035 \N -414222 5.37e-07 3.11e-07 1.04e-07 3.57e-07 1.05e-07 1.13e-07 3.11e-07 5.78e-08 1.98e-07 1.37e-07 2.98e-07 1.22e-07 5.39e-07 1.1e-07 1.32e-07 1.13e-07 8.53e-08 2.9e-07 1.7e-07 7.29e-08 1.8e-07 2.07e-07 2.11e-07 7.36e-08 3.27e-07 1.51e-07 1.29e-07 1.67e-07 1.54e-07 1.59e-07 1.43e-07 8.32e-08 5.2e-08 1.67e-07 2.43e-07 8.17e-08 2.04e-07 7.86e-08 4.11e-08 3.09e-08 3.6e-08 3.85e-07 6.65e-08 4.18e-08 1.89e-07 4.28e-08 1.03e-07 8.74e-08 5.93e-08