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Genes within 1Mb (chr1:62952179:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -641232 sc-eQTL 9.78e-01 -0.00211 0.0757 0.489 B L1
ENSG00000088035 ALG6 -415396 sc-eQTL 5.91e-01 -0.0422 0.0784 0.489 B L1
ENSG00000116641 DOCK7 263793 sc-eQTL 8.83e-01 0.0115 0.0784 0.489 B L1
ENSG00000125703 ATG4C 168047 sc-eQTL 5.46e-01 0.0329 0.0545 0.489 B L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 9.78e-01 -0.00238 0.0867 0.489 B L1
ENSG00000162607 USP1 515882 sc-eQTL 1.78e-02 -0.177 0.0743 0.489 B L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 8.40e-01 -0.018 0.0888 0.489 B L1
ENSG00000079739 PGM1 -641232 sc-eQTL 1.47e-01 0.0954 0.0656 0.489 CD4T L1
ENSG00000088035 ALG6 -415396 sc-eQTL 6.83e-01 -0.0297 0.0727 0.489 CD4T L1
ENSG00000116641 DOCK7 263793 sc-eQTL 3.36e-01 -0.0708 0.0735 0.489 CD4T L1
ENSG00000125703 ATG4C 168047 sc-eQTL 8.49e-01 0.0113 0.0594 0.489 CD4T L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 8.85e-01 -0.0123 0.0844 0.489 CD4T L1
ENSG00000162607 USP1 515882 sc-eQTL 2.54e-01 -0.0658 0.0575 0.489 CD4T L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.06e-01 -0.00894 0.0758 0.489 CD4T L1
ENSG00000079739 PGM1 -641232 sc-eQTL 9.67e-01 0.00301 0.0726 0.489 CD8T L1
ENSG00000088035 ALG6 -415396 sc-eQTL 4.61e-01 -0.059 0.0799 0.489 CD8T L1
ENSG00000116641 DOCK7 263793 sc-eQTL 5.61e-03 0.223 0.0796 0.489 CD8T L1
ENSG00000125703 ATG4C 168047 sc-eQTL 8.43e-01 0.0153 0.077 0.489 CD8T L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.56e-01 0.0508 0.0861 0.489 CD8T L1
ENSG00000162607 USP1 515882 sc-eQTL 1.69e-01 0.0922 0.0668 0.489 CD8T L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 1.09e-01 -0.137 0.0854 0.489 CD8T L1
ENSG00000079739 PGM1 -641232 sc-eQTL 1.74e-01 0.111 0.0814 0.489 DC L1
ENSG00000088035 ALG6 -415396 sc-eQTL 4.63e-01 0.062 0.0843 0.489 DC L1
ENSG00000116641 DOCK7 263793 sc-eQTL 1.14e-02 0.217 0.0851 0.489 DC L1
ENSG00000125703 ATG4C 168047 sc-eQTL 7.71e-03 0.179 0.0665 0.489 DC L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 8.41e-01 0.0191 0.0946 0.489 DC L1
ENSG00000162607 USP1 515882 sc-eQTL 8.98e-01 -0.0106 0.0826 0.489 DC L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 1.33e-02 0.203 0.0811 0.489 DC L1
ENSG00000079739 PGM1 -641232 sc-eQTL 1.86e-01 0.105 0.0792 0.489 Mono L1
ENSG00000088035 ALG6 -415396 sc-eQTL 6.16e-01 -0.0417 0.0829 0.489 Mono L1
ENSG00000116641 DOCK7 263793 sc-eQTL 9.44e-01 0.00563 0.0803 0.489 Mono L1
ENSG00000125703 ATG4C 168047 sc-eQTL 5.05e-01 -0.0362 0.0542 0.489 Mono L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 2.58e-01 -0.0969 0.0855 0.489 Mono L1
ENSG00000162607 USP1 515882 sc-eQTL 5.58e-01 -0.0413 0.0703 0.489 Mono L1
ENSG00000240563 L1TD1 757330 sc-eQTL 9.19e-01 -0.00666 0.0657 0.489 Mono L1
ENSG00000079739 PGM1 -641232 sc-eQTL 7.97e-01 -0.0173 0.0671 0.489 NK L1
ENSG00000088035 ALG6 -415396 sc-eQTL 5.60e-02 0.15 0.078 0.489 NK L1
ENSG00000116641 DOCK7 263793 sc-eQTL 1.00e+00 1.71e-05 0.0648 0.489 NK L1
ENSG00000125703 ATG4C 168047 sc-eQTL 5.48e-01 0.0418 0.0696 0.489 NK L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.67e-01 0.0629 0.0864 0.489 NK L1
ENSG00000162607 USP1 515882 sc-eQTL 6.28e-02 -0.143 0.0767 0.489 NK L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 6.78e-01 -0.039 0.0939 0.489 NK L1
ENSG00000079739 PGM1 -641232 sc-eQTL 8.41e-01 0.0153 0.0761 0.489 Other_T L1
ENSG00000088035 ALG6 -415396 sc-eQTL 4.95e-01 0.0521 0.0764 0.489 Other_T L1
ENSG00000116641 DOCK7 263793 sc-eQTL 4.06e-01 0.0649 0.0779 0.489 Other_T L1
ENSG00000125703 ATG4C 168047 sc-eQTL 3.08e-01 0.0689 0.0674 0.489 Other_T L1
ENSG00000142856 ITGB3BP -641542 sc-eQTL 8.52e-02 0.103 0.0595 0.489 Other_T L1
ENSG00000162607 USP1 515882 sc-eQTL 5.10e-01 -0.0342 0.0519 0.489 Other_T L1
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.45e-01 -0.0706 0.0923 0.489 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -641232 sc-eQTL 7.61e-01 0.0328 0.108 0.482 B_Activated L2
ENSG00000088035 ALG6 -415396 sc-eQTL 3.08e-01 0.105 0.103 0.482 B_Activated L2
ENSG00000116641 DOCK7 263793 sc-eQTL 4.30e-01 -0.0758 0.096 0.482 B_Activated L2
ENSG00000125703 ATG4C 168047 sc-eQTL 2.08e-01 0.127 0.101 0.482 B_Activated L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 7.18e-01 0.0357 0.0988 0.482 B_Activated L2
ENSG00000162607 USP1 515882 sc-eQTL 3.60e-01 0.0981 0.107 0.482 B_Activated L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 8.74e-02 -0.159 0.0927 0.482 B_Activated L2
ENSG00000079739 PGM1 -641232 sc-eQTL 4.68e-01 0.0668 0.0918 0.489 B_Intermediate L2
ENSG00000088035 ALG6 -415396 sc-eQTL 6.13e-01 0.0473 0.0933 0.489 B_Intermediate L2
ENSG00000116641 DOCK7 263793 sc-eQTL 9.09e-01 -0.0102 0.0892 0.489 B_Intermediate L2
ENSG00000125703 ATG4C 168047 sc-eQTL 7.89e-01 0.0202 0.0755 0.489 B_Intermediate L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 1.12e-01 -0.143 0.0894 0.489 B_Intermediate L2
ENSG00000162607 USP1 515882 sc-eQTL 3.90e-01 0.0773 0.0897 0.489 B_Intermediate L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.79e-01 -0.0631 0.089 0.489 B_Intermediate L2
ENSG00000079739 PGM1 -641232 sc-eQTL 5.80e-01 0.05 0.0903 0.491 B_Memory L2
ENSG00000088035 ALG6 -415396 sc-eQTL 9.02e-01 0.0113 0.0919 0.491 B_Memory L2
ENSG00000116641 DOCK7 263793 sc-eQTL 3.36e-01 -0.083 0.086 0.491 B_Memory L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.21e-01 0.0526 0.0818 0.491 B_Memory L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.66e-01 -0.0847 0.0935 0.491 B_Memory L2
ENSG00000162607 USP1 515882 sc-eQTL 4.61e-02 -0.188 0.0936 0.491 B_Memory L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 2.42e-01 0.109 0.0927 0.491 B_Memory L2
ENSG00000079739 PGM1 -641232 sc-eQTL 4.74e-01 -0.0648 0.0904 0.489 B_Naive1 L2
ENSG00000088035 ALG6 -415396 sc-eQTL 8.11e-02 -0.158 0.0902 0.489 B_Naive1 L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.87e-01 0.0351 0.087 0.489 B_Naive1 L2
ENSG00000125703 ATG4C 168047 sc-eQTL 9.15e-01 0.0072 0.067 0.489 B_Naive1 L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.33e-01 0.086 0.0887 0.489 B_Naive1 L2
ENSG00000162607 USP1 515882 sc-eQTL 1.12e-01 -0.124 0.0777 0.489 B_Naive1 L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.23e-01 -0.00919 0.0949 0.489 B_Naive1 L2
ENSG00000079739 PGM1 -641232 sc-eQTL 2.53e-01 0.102 0.0894 0.491 B_Naive2 L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.33e-01 -0.0734 0.0933 0.491 B_Naive2 L2
ENSG00000116641 DOCK7 263793 sc-eQTL 2.82e-01 -0.0967 0.0896 0.491 B_Naive2 L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.34e-01 -0.0538 0.0864 0.491 B_Naive2 L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.34e-01 -0.0584 0.0937 0.491 B_Naive2 L2
ENSG00000162607 USP1 515882 sc-eQTL 7.72e-01 -0.0259 0.0893 0.491 B_Naive2 L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.89e-01 -0.0646 0.0933 0.491 B_Naive2 L2
ENSG00000079739 PGM1 -641232 sc-eQTL 1.80e-01 -0.125 0.093 0.491 CD4_CTL L2
ENSG00000088035 ALG6 -415396 sc-eQTL 2.76e-02 0.216 0.0975 0.491 CD4_CTL L2
ENSG00000116641 DOCK7 263793 sc-eQTL 9.50e-01 0.00543 0.0863 0.491 CD4_CTL L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.43e-01 -0.0544 0.0892 0.491 CD4_CTL L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.30e-01 0.06 0.0954 0.491 CD4_CTL L2
ENSG00000162607 USP1 515882 sc-eQTL 8.80e-01 -0.0137 0.0909 0.491 CD4_CTL L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 6.64e-01 0.0395 0.0907 0.491 CD4_CTL L2
ENSG00000079739 PGM1 -641232 sc-eQTL 2.07e-01 0.0936 0.0739 0.489 CD4_Naive L2
ENSG00000088035 ALG6 -415396 sc-eQTL 7.26e-01 -0.0283 0.0806 0.489 CD4_Naive L2
ENSG00000116641 DOCK7 263793 sc-eQTL 2.60e-01 -0.0893 0.079 0.489 CD4_Naive L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.51e-01 0.0418 0.07 0.489 CD4_Naive L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 6.90e-01 -0.0342 0.0856 0.489 CD4_Naive L2
ENSG00000162607 USP1 515882 sc-eQTL 3.60e-01 -0.0599 0.0653 0.489 CD4_Naive L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.62e-01 -0.00404 0.085 0.489 CD4_Naive L2
ENSG00000079739 PGM1 -641232 sc-eQTL 8.35e-01 0.016 0.077 0.489 CD4_TCM L2
ENSG00000088035 ALG6 -415396 sc-eQTL 9.14e-02 -0.151 0.0888 0.489 CD4_TCM L2
ENSG00000116641 DOCK7 263793 sc-eQTL 7.99e-01 -0.0202 0.0793 0.489 CD4_TCM L2
ENSG00000125703 ATG4C 168047 sc-eQTL 4.09e-01 0.0637 0.077 0.489 CD4_TCM L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 7.22e-01 -0.0324 0.0909 0.489 CD4_TCM L2
ENSG00000162607 USP1 515882 sc-eQTL 4.42e-01 -0.0574 0.0745 0.489 CD4_TCM L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 7.83e-01 -0.0243 0.088 0.489 CD4_TCM L2
ENSG00000079739 PGM1 -641232 sc-eQTL 3.77e-01 0.0803 0.0907 0.489 CD4_TEM L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.56e-01 -0.068 0.0912 0.489 CD4_TEM L2
ENSG00000116641 DOCK7 263793 sc-eQTL 5.69e-01 -0.0508 0.0889 0.489 CD4_TEM L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.52e-01 -0.0514 0.0864 0.489 CD4_TEM L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 9.07e-01 -0.0104 0.0892 0.489 CD4_TEM L2
ENSG00000162607 USP1 515882 sc-eQTL 3.46e-01 0.0796 0.0844 0.489 CD4_TEM L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.41e-01 0.00686 0.0925 0.489 CD4_TEM L2
ENSG00000079739 PGM1 -641232 sc-eQTL 3.48e-01 -0.078 0.0829 0.489 CD8_CTL L2
ENSG00000088035 ALG6 -415396 sc-eQTL 2.29e-01 0.106 0.088 0.489 CD8_CTL L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.23e-02 0.156 0.0831 0.489 CD8_CTL L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.48e-01 0.0537 0.0892 0.489 CD8_CTL L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.35e-01 0.0577 0.0927 0.489 CD8_CTL L2
ENSG00000162607 USP1 515882 sc-eQTL 4.19e-01 0.0672 0.083 0.489 CD8_CTL L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.50e-01 -0.0719 0.0949 0.489 CD8_CTL L2
ENSG00000079739 PGM1 -641232 sc-eQTL 2.53e-01 0.0956 0.0834 0.489 CD8_Naive L2
ENSG00000088035 ALG6 -415396 sc-eQTL 2.40e-01 -0.102 0.0863 0.489 CD8_Naive L2
ENSG00000116641 DOCK7 263793 sc-eQTL 3.65e-02 0.186 0.0886 0.489 CD8_Naive L2
ENSG00000125703 ATG4C 168047 sc-eQTL 8.11e-01 -0.0206 0.0859 0.489 CD8_Naive L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.43e-01 0.0825 0.0869 0.489 CD8_Naive L2
ENSG00000162607 USP1 515882 sc-eQTL 4.91e-01 0.0507 0.0735 0.489 CD8_Naive L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 5.31e-01 -0.0515 0.082 0.489 CD8_Naive L2
ENSG00000079739 PGM1 -641232 sc-eQTL 6.85e-01 -0.0382 0.0941 0.502 CD8_TCM L2
ENSG00000088035 ALG6 -415396 sc-eQTL 6.91e-01 0.038 0.0953 0.502 CD8_TCM L2
ENSG00000116641 DOCK7 263793 sc-eQTL 8.44e-01 -0.0184 0.093 0.502 CD8_TCM L2
ENSG00000125703 ATG4C 168047 sc-eQTL 1.38e-01 -0.141 0.0946 0.502 CD8_TCM L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 1.18e-01 -0.144 0.0919 0.502 CD8_TCM L2
ENSG00000162607 USP1 515882 sc-eQTL 9.38e-01 -0.00697 0.089 0.502 CD8_TCM L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 8.31e-01 0.0201 0.0942 0.502 CD8_TCM L2
ENSG00000079739 PGM1 -641232 sc-eQTL 6.22e-01 0.0471 0.0954 0.493 CD8_TEM L2
ENSG00000088035 ALG6 -415396 sc-eQTL 6.10e-01 -0.0489 0.0957 0.493 CD8_TEM L2
ENSG00000116641 DOCK7 263793 sc-eQTL 1.12e-01 0.147 0.0922 0.493 CD8_TEM L2
ENSG00000125703 ATG4C 168047 sc-eQTL 6.83e-01 0.0365 0.0892 0.493 CD8_TEM L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 1.30e-01 -0.146 0.0961 0.493 CD8_TEM L2
ENSG00000162607 USP1 515882 sc-eQTL 1.07e-01 0.148 0.0916 0.493 CD8_TEM L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 2.56e-01 -0.106 0.0934 0.493 CD8_TEM L2
ENSG00000079739 PGM1 -641232 sc-eQTL 4.08e-01 -0.0741 0.0893 0.485 MAIT L2
ENSG00000088035 ALG6 -415396 sc-eQTL 6.13e-02 0.165 0.0878 0.485 MAIT L2
ENSG00000116641 DOCK7 263793 sc-eQTL 4.59e-01 0.0629 0.0847 0.485 MAIT L2
ENSG00000125703 ATG4C 168047 sc-eQTL 4.84e-01 0.0626 0.0894 0.485 MAIT L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 1.96e-01 0.116 0.0893 0.485 MAIT L2
ENSG00000162607 USP1 515882 sc-eQTL 7.65e-01 -0.0267 0.0889 0.485 MAIT L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 7.93e-01 0.0242 0.0923 0.485 MAIT L2
ENSG00000079739 PGM1 -641232 sc-eQTL 9.31e-01 -0.00761 0.0875 0.487 NK_CD56bright L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.88e-01 0.0623 0.0896 0.487 NK_CD56bright L2
ENSG00000116641 DOCK7 263793 sc-eQTL 5.62e-01 -0.0451 0.0777 0.487 NK_CD56bright L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.83e-01 0.0478 0.0868 0.487 NK_CD56bright L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.33e-02 -0.174 0.0896 0.487 NK_CD56bright L2
ENSG00000162607 USP1 515882 sc-eQTL 7.63e-01 0.0281 0.0933 0.487 NK_CD56bright L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 8.89e-01 -0.0124 0.0892 0.487 NK_CD56bright L2
ENSG00000079739 PGM1 -641232 sc-eQTL 3.56e-01 -0.0642 0.0693 0.489 NK_CD56dim L2
ENSG00000088035 ALG6 -415396 sc-eQTL 3.94e-01 0.0751 0.0879 0.489 NK_CD56dim L2
ENSG00000116641 DOCK7 263793 sc-eQTL 1.36e-01 0.114 0.0762 0.489 NK_CD56dim L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.01e-01 0.0524 0.0778 0.489 NK_CD56dim L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.33e-01 0.0695 0.0885 0.489 NK_CD56dim L2
ENSG00000162607 USP1 515882 sc-eQTL 2.58e-01 -0.0971 0.0857 0.489 NK_CD56dim L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 6.25e-01 -0.0468 0.0956 0.489 NK_CD56dim L2
ENSG00000079739 PGM1 -641232 sc-eQTL 5.45e-01 -0.0573 0.0945 0.484 NK_HLA L2
ENSG00000088035 ALG6 -415396 sc-eQTL 1.95e-01 0.127 0.0976 0.484 NK_HLA L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.81e-01 -0.0308 0.0749 0.484 NK_HLA L2
ENSG00000125703 ATG4C 168047 sc-eQTL 1.80e-01 -0.117 0.0868 0.484 NK_HLA L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.06e-01 0.0936 0.0913 0.484 NK_HLA L2
ENSG00000162607 USP1 515882 sc-eQTL 1.34e-01 -0.143 0.0953 0.484 NK_HLA L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 7.00e-01 -0.0337 0.0872 0.484 NK_HLA L2
ENSG00000079739 PGM1 -641232 sc-eQTL 9.94e-01 -0.00059 0.0767 0.489 NK_cytokine L2
ENSG00000088035 ALG6 -415396 sc-eQTL 3.11e-01 0.0878 0.0864 0.489 NK_cytokine L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.93e-01 -0.0317 0.0802 0.489 NK_cytokine L2
ENSG00000125703 ATG4C 168047 sc-eQTL 5.50e-01 -0.0491 0.082 0.489 NK_cytokine L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.23e-01 0.084 0.0848 0.489 NK_cytokine L2
ENSG00000162607 USP1 515882 sc-eQTL 8.49e-02 -0.154 0.0888 0.489 NK_cytokine L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 3.46e-01 0.0853 0.0904 0.489 NK_cytokine L2
ENSG00000079739 PGM1 -641232 sc-eQTL 7.53e-01 -0.034 0.108 0.463 PB L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.45e-01 0.0865 0.113 0.463 PB L2
ENSG00000116641 DOCK7 263793 sc-eQTL 9.54e-01 0.00693 0.121 0.463 PB L2
ENSG00000125703 ATG4C 168047 sc-eQTL 6.82e-01 0.0433 0.105 0.463 PB L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 8.38e-01 -0.0216 0.105 0.463 PB L2
ENSG00000162607 USP1 515882 sc-eQTL 1.08e-01 -0.168 0.104 0.463 PB L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 8.23e-01 0.026 0.116 0.463 PB L2
ENSG00000079739 PGM1 -641232 sc-eQTL 4.83e-01 0.0583 0.0829 0.491 Pro_T L2
ENSG00000088035 ALG6 -415396 sc-eQTL 3.37e-01 0.0811 0.0842 0.491 Pro_T L2
ENSG00000116641 DOCK7 263793 sc-eQTL 5.18e-01 0.0548 0.0846 0.491 Pro_T L2
ENSG00000125703 ATG4C 168047 sc-eQTL 8.86e-01 0.0107 0.0742 0.491 Pro_T L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.16e-01 0.0605 0.0743 0.491 Pro_T L2
ENSG00000162607 USP1 515882 sc-eQTL 1.26e-01 0.078 0.0509 0.491 Pro_T L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 1.18e-01 -0.135 0.0859 0.491 Pro_T L2
ENSG00000079739 PGM1 -641232 sc-eQTL 4.92e-02 0.175 0.0886 0.489 Treg L2
ENSG00000088035 ALG6 -415396 sc-eQTL 9.13e-01 0.0105 0.0956 0.489 Treg L2
ENSG00000116641 DOCK7 263793 sc-eQTL 7.69e-01 -0.0258 0.0878 0.489 Treg L2
ENSG00000125703 ATG4C 168047 sc-eQTL 4.77e-01 0.0639 0.0896 0.489 Treg L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 6.38e-01 -0.0442 0.0938 0.489 Treg L2
ENSG00000162607 USP1 515882 sc-eQTL 3.99e-01 0.0766 0.0906 0.489 Treg L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 1.54e-02 -0.216 0.0885 0.489 Treg L2
ENSG00000079739 PGM1 -641232 sc-eQTL 1.32e-01 0.134 0.0884 0.48 cDC L2
ENSG00000088035 ALG6 -415396 sc-eQTL 6.99e-01 0.0349 0.0901 0.48 cDC L2
ENSG00000116641 DOCK7 263793 sc-eQTL 2.58e-02 0.196 0.0873 0.48 cDC L2
ENSG00000125703 ATG4C 168047 sc-eQTL 1.88e-01 0.101 0.0765 0.48 cDC L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.92e-01 0.0522 0.0973 0.48 cDC L2
ENSG00000162607 USP1 515882 sc-eQTL 3.32e-01 -0.0841 0.0865 0.48 cDC L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.84e-01 0.00156 0.0783 0.48 cDC L2
ENSG00000079739 PGM1 -641232 sc-eQTL 1.12e-01 0.13 0.0817 0.489 cMono_IL1B L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.45e-01 -0.0629 0.0821 0.489 cMono_IL1B L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.65e-01 0.0376 0.0867 0.489 cMono_IL1B L2
ENSG00000125703 ATG4C 168047 sc-eQTL 1.89e-01 -0.08 0.0607 0.489 cMono_IL1B L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 1.10e-01 -0.138 0.0858 0.489 cMono_IL1B L2
ENSG00000162607 USP1 515882 sc-eQTL 4.87e-01 -0.053 0.0761 0.489 cMono_IL1B L2
ENSG00000240563 L1TD1 757330 sc-eQTL 9.39e-01 0.00589 0.0765 0.489 cMono_IL1B L2
ENSG00000079739 PGM1 -641232 sc-eQTL 2.26e-01 0.112 0.0919 0.489 cMono_S100A L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.76e-01 -0.0666 0.0933 0.489 cMono_S100A L2
ENSG00000116641 DOCK7 263793 sc-eQTL 4.58e-01 -0.0643 0.0865 0.489 cMono_S100A L2
ENSG00000125703 ATG4C 168047 sc-eQTL 9.88e-01 -0.00114 0.075 0.489 cMono_S100A L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 6.76e-01 -0.0354 0.0846 0.489 cMono_S100A L2
ENSG00000162607 USP1 515882 sc-eQTL 9.61e-01 -0.0043 0.0871 0.489 cMono_S100A L2
ENSG00000240563 L1TD1 757330 sc-eQTL 9.78e-03 -0.186 0.0713 0.489 cMono_S100A L2
ENSG00000079739 PGM1 -641232 sc-eQTL 3.54e-01 0.0983 0.106 0.479 gdT L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.04e-01 -0.0945 0.113 0.479 gdT L2
ENSG00000116641 DOCK7 263793 sc-eQTL 6.44e-01 0.0513 0.111 0.479 gdT L2
ENSG00000125703 ATG4C 168047 sc-eQTL 7.42e-01 -0.0349 0.106 0.479 gdT L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.15e-01 0.113 0.112 0.479 gdT L2
ENSG00000162607 USP1 515882 sc-eQTL 7.93e-01 -0.028 0.106 0.479 gdT L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.89e-02 -0.217 0.109 0.479 gdT L2
ENSG00000079739 PGM1 -641232 sc-eQTL 8.85e-01 0.0132 0.0912 0.493 intMono L2
ENSG00000088035 ALG6 -415396 sc-eQTL 4.03e-01 -0.0711 0.0848 0.493 intMono L2
ENSG00000116641 DOCK7 263793 sc-eQTL 4.12e-01 0.0711 0.0866 0.493 intMono L2
ENSG00000125703 ATG4C 168047 sc-eQTL 4.24e-01 0.0663 0.0827 0.493 intMono L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 6.07e-01 -0.0469 0.0912 0.493 intMono L2
ENSG00000162607 USP1 515882 sc-eQTL 2.61e-01 -0.104 0.0925 0.493 intMono L2
ENSG00000240563 L1TD1 757330 sc-eQTL 7.85e-01 -0.0186 0.0682 0.493 intMono L2
ENSG00000079739 PGM1 -641232 sc-eQTL 6.08e-01 0.0422 0.0822 0.484 ncMono L2
ENSG00000088035 ALG6 -415396 sc-eQTL 5.29e-02 0.174 0.0895 0.484 ncMono L2
ENSG00000116641 DOCK7 263793 sc-eQTL 8.23e-01 0.0199 0.0889 0.484 ncMono L2
ENSG00000125703 ATG4C 168047 sc-eQTL 2.14e-01 0.103 0.0827 0.484 ncMono L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 7.14e-01 -0.0319 0.0868 0.484 ncMono L2
ENSG00000162607 USP1 515882 sc-eQTL 5.50e-02 -0.17 0.0879 0.484 ncMono L2
ENSG00000240563 L1TD1 757330 sc-eQTL 9.07e-01 -0.00735 0.0629 0.484 ncMono L2
ENSG00000079739 PGM1 -641232 sc-eQTL 9.11e-01 -0.0117 0.105 0.486 pDC L2
ENSG00000088035 ALG6 -415396 sc-eQTL 7.20e-01 0.0366 0.102 0.486 pDC L2
ENSG00000116641 DOCK7 263793 sc-eQTL 1.56e-01 0.148 0.104 0.486 pDC L2
ENSG00000125703 ATG4C 168047 sc-eQTL 1.99e-01 0.12 0.0931 0.486 pDC L2
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.16e-01 -0.0855 0.105 0.486 pDC L2
ENSG00000162607 USP1 515882 sc-eQTL 8.66e-01 0.0181 0.107 0.486 pDC L2
ENSG00000203965 EFCAB7 -571193 sc-eQTL 2.08e-01 0.117 0.0925 0.486 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -641232 sc-eQTL 6.07e-01 0.0437 0.0849 0.489 B_Memory LOneK1K
ENSG00000088035 ALG6 -415396 sc-eQTL 4.92e-01 0.0646 0.0938 0.489 B_Memory LOneK1K
ENSG00000116641 DOCK7 263793 sc-eQTL 2.04e-01 -0.103 0.0812 0.489 B_Memory LOneK1K
ENSG00000125703 ATG4C 168047 sc-eQTL 4.82e-01 0.0463 0.0658 0.489 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -641542 sc-eQTL 5.94e-02 -0.163 0.0858 0.489 B_Memory LOneK1K
ENSG00000162607 USP1 515882 sc-eQTL 2.88e-01 -0.0893 0.0838 0.489 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.00e-01 -0.0114 0.0902 0.489 B_Memory LOneK1K
ENSG00000079739 PGM1 -641232 sc-eQTL 9.75e-01 -0.00281 0.0887 0.489 B_Naive LOneK1K
ENSG00000088035 ALG6 -415396 sc-eQTL 8.99e-02 -0.155 0.0907 0.489 B_Naive LOneK1K
ENSG00000116641 DOCK7 263793 sc-eQTL 9.54e-01 0.00496 0.0853 0.489 B_Naive LOneK1K
ENSG00000125703 ATG4C 168047 sc-eQTL 7.86e-01 -0.0177 0.0651 0.489 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.41e-01 0.0709 0.0919 0.489 B_Naive LOneK1K
ENSG00000162607 USP1 515882 sc-eQTL 6.80e-02 -0.144 0.0784 0.489 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -571193 sc-eQTL 4.64e-01 -0.0678 0.0924 0.489 B_Naive LOneK1K
ENSG00000079739 PGM1 -641232 sc-eQTL 8.01e-02 0.148 0.0841 0.489 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -415396 sc-eQTL 3.31e-01 -0.0797 0.0818 0.489 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 263793 sc-eQTL 7.75e-01 0.0236 0.0826 0.489 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 168047 sc-eQTL 2.95e-01 -0.0598 0.0569 0.489 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -641542 sc-eQTL 2.33e-01 -0.101 0.0842 0.489 CD14_Mono LOneK1K
ENSG00000162607 USP1 515882 sc-eQTL 9.73e-01 -0.00245 0.0721 0.489 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 757330 sc-eQTL 5.70e-01 -0.0444 0.0782 0.489 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -641232 sc-eQTL 3.79e-01 -0.0694 0.0787 0.491 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -415396 sc-eQTL 2.20e-01 0.11 0.0892 0.491 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 263793 sc-eQTL 3.74e-01 0.0788 0.0884 0.491 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 168047 sc-eQTL 3.42e-01 0.0718 0.0753 0.491 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -641542 sc-eQTL 4.09e-01 -0.0724 0.0875 0.491 CD16_Mono LOneK1K
ENSG00000162607 USP1 515882 sc-eQTL 1.07e-01 -0.132 0.0819 0.491 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 757330 sc-eQTL 6.71e-01 0.0239 0.0562 0.491 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -641232 sc-eQTL 7.25e-01 -0.024 0.0681 0.489 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -415396 sc-eQTL 1.08e-01 0.131 0.0813 0.489 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 263793 sc-eQTL 8.09e-01 0.0178 0.0733 0.489 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 168047 sc-eQTL 9.11e-01 0.00823 0.0732 0.489 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -641542 sc-eQTL 3.30e-01 0.0844 0.0865 0.489 NK_CD56dim LOneK1K
ENSG00000162607 USP1 515882 sc-eQTL 1.72e-02 -0.186 0.0776 0.489 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -571193 sc-eQTL 9.33e-01 -0.00809 0.0958 0.489 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 168047 eQTL 0.0194 0.0386 0.0165 0.0 0.0 0.463
ENSG00000162607 USP1 515882 eQTL 0.047 0.0252 0.0127 0.0 0.0 0.463

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina