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Genes within 1Mb (chr1:62950291:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643120 sc-eQTL 9.93e-01 -0.000595 0.071 0.453 B L1
ENSG00000088035 ALG6 -417284 sc-eQTL 9.64e-01 -0.00332 0.0736 0.453 B L1
ENSG00000116641 DOCK7 261905 sc-eQTL 2.69e-01 -0.0814 0.0734 0.453 B L1
ENSG00000125703 ATG4C 166159 sc-eQTL 6.09e-01 0.0262 0.0511 0.453 B L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.26e-01 0.0648 0.0813 0.453 B L1
ENSG00000162607 USP1 513994 sc-eQTL 5.93e-02 0.133 0.07 0.453 B L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 8.02e-01 0.021 0.0834 0.453 B L1
ENSG00000079739 PGM1 -643120 sc-eQTL 8.98e-02 -0.106 0.062 0.453 CD4T L1
ENSG00000088035 ALG6 -417284 sc-eQTL 6.33e-01 -0.033 0.0688 0.453 CD4T L1
ENSG00000116641 DOCK7 261905 sc-eQTL 7.97e-01 0.018 0.0697 0.453 CD4T L1
ENSG00000125703 ATG4C 166159 sc-eQTL 2.52e-01 -0.0645 0.0561 0.453 CD4T L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.01e-01 0.131 0.0794 0.453 CD4T L1
ENSG00000162607 USP1 513994 sc-eQTL 6.98e-01 0.0212 0.0546 0.453 CD4T L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.20e-01 0.0713 0.0716 0.453 CD4T L1
ENSG00000079739 PGM1 -643120 sc-eQTL 4.09e-02 0.141 0.0684 0.453 CD8T L1
ENSG00000088035 ALG6 -417284 sc-eQTL 2.86e-01 0.0813 0.0759 0.453 CD8T L1
ENSG00000116641 DOCK7 261905 sc-eQTL 1.18e-02 -0.193 0.076 0.453 CD8T L1
ENSG00000125703 ATG4C 166159 sc-eQTL 9.75e-01 0.00233 0.0733 0.453 CD8T L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 9.82e-01 0.00186 0.082 0.453 CD8T L1
ENSG00000162607 USP1 513994 sc-eQTL 2.03e-01 -0.0811 0.0636 0.453 CD8T L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.37e-02 0.173 0.0808 0.453 CD8T L1
ENSG00000079739 PGM1 -643120 sc-eQTL 5.36e-02 -0.146 0.0753 0.455 DC L1
ENSG00000088035 ALG6 -417284 sc-eQTL 6.72e-02 -0.143 0.0778 0.455 DC L1
ENSG00000116641 DOCK7 261905 sc-eQTL 2.39e-01 -0.0947 0.0802 0.455 DC L1
ENSG00000125703 ATG4C 166159 sc-eQTL 1.37e-03 -0.199 0.0613 0.455 DC L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.61e-01 -0.0648 0.0879 0.455 DC L1
ENSG00000162607 USP1 513994 sc-eQTL 4.60e-01 0.0567 0.0767 0.455 DC L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 2.98e-03 -0.225 0.0749 0.455 DC L1
ENSG00000079739 PGM1 -643120 sc-eQTL 2.36e-01 -0.0899 0.0756 0.453 Mono L1
ENSG00000088035 ALG6 -417284 sc-eQTL 7.85e-01 -0.0216 0.0791 0.453 Mono L1
ENSG00000116641 DOCK7 261905 sc-eQTL 6.03e-01 -0.0398 0.0765 0.453 Mono L1
ENSG00000125703 ATG4C 166159 sc-eQTL 1.00e-01 0.0849 0.0514 0.453 Mono L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 2.16e-02 0.187 0.0807 0.453 Mono L1
ENSG00000162607 USP1 513994 sc-eQTL 2.10e-01 0.0841 0.0669 0.453 Mono L1
ENSG00000240563 L1TD1 755442 sc-eQTL 3.81e-01 -0.0549 0.0625 0.453 Mono L1
ENSG00000079739 PGM1 -643120 sc-eQTL 1.13e-01 0.0997 0.0627 0.455 NK L1
ENSG00000088035 ALG6 -417284 sc-eQTL 1.95e-01 -0.0959 0.0737 0.455 NK L1
ENSG00000116641 DOCK7 261905 sc-eQTL 3.43e-01 -0.0578 0.0608 0.455 NK L1
ENSG00000125703 ATG4C 166159 sc-eQTL 8.97e-01 0.00847 0.0654 0.455 NK L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 2.68e-01 -0.0902 0.0811 0.455 NK L1
ENSG00000162607 USP1 513994 sc-eQTL 5.62e-01 0.0422 0.0726 0.455 NK L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 1.32e-01 0.133 0.0878 0.455 NK L1
ENSG00000079739 PGM1 -643120 sc-eQTL 8.25e-01 0.016 0.0722 0.453 Other_T L1
ENSG00000088035 ALG6 -417284 sc-eQTL 1.61e-01 0.101 0.0722 0.453 Other_T L1
ENSG00000116641 DOCK7 261905 sc-eQTL 3.33e-01 -0.0717 0.0739 0.453 Other_T L1
ENSG00000125703 ATG4C 166159 sc-eQTL 9.25e-01 -0.00601 0.0641 0.453 Other_T L1
ENSG00000142856 ITGB3BP -643430 sc-eQTL 2.70e-01 -0.0627 0.0567 0.453 Other_T L1
ENSG00000162607 USP1 513994 sc-eQTL 2.33e-01 0.0588 0.0491 0.453 Other_T L1
ENSG00000203965 EFCAB7 -573081 sc-eQTL 8.91e-01 0.012 0.0877 0.453 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643120 sc-eQTL 7.98e-01 -0.0252 0.0986 0.454 B_Activated L2
ENSG00000088035 ALG6 -417284 sc-eQTL 4.37e-02 -0.19 0.0934 0.454 B_Activated L2
ENSG00000116641 DOCK7 261905 sc-eQTL 6.45e-01 0.0406 0.0879 0.454 B_Activated L2
ENSG00000125703 ATG4C 166159 sc-eQTL 6.68e-01 0.0398 0.0925 0.454 B_Activated L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 5.52e-01 -0.0538 0.0903 0.454 B_Activated L2
ENSG00000162607 USP1 513994 sc-eQTL 7.16e-01 -0.0357 0.098 0.454 B_Activated L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.41e-02 0.143 0.0849 0.454 B_Activated L2
ENSG00000079739 PGM1 -643120 sc-eQTL 4.12e-01 -0.0703 0.0855 0.453 B_Intermediate L2
ENSG00000088035 ALG6 -417284 sc-eQTL 7.76e-01 0.0248 0.0869 0.453 B_Intermediate L2
ENSG00000116641 DOCK7 261905 sc-eQTL 5.76e-01 0.0464 0.083 0.453 B_Intermediate L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.78e-01 0.0499 0.0702 0.453 B_Intermediate L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.25e-01 0.0825 0.0836 0.453 B_Intermediate L2
ENSG00000162607 USP1 513994 sc-eQTL 5.05e-02 -0.163 0.0829 0.453 B_Intermediate L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 6.38e-01 0.039 0.0829 0.453 B_Intermediate L2
ENSG00000079739 PGM1 -643120 sc-eQTL 5.24e-01 -0.0539 0.0844 0.45 B_Memory L2
ENSG00000088035 ALG6 -417284 sc-eQTL 1.60e-01 -0.12 0.0855 0.45 B_Memory L2
ENSG00000116641 DOCK7 261905 sc-eQTL 4.21e-01 0.0648 0.0804 0.45 B_Memory L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.07e-01 -0.0634 0.0764 0.45 B_Memory L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.03e-02 0.189 0.0866 0.45 B_Memory L2
ENSG00000162607 USP1 513994 sc-eQTL 5.69e-02 0.168 0.0876 0.45 B_Memory L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 7.01e-01 -0.0334 0.0869 0.45 B_Memory L2
ENSG00000079739 PGM1 -643120 sc-eQTL 7.26e-01 0.0301 0.0858 0.453 B_Naive1 L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.51e-03 0.237 0.0846 0.453 B_Naive1 L2
ENSG00000116641 DOCK7 261905 sc-eQTL 5.11e-01 -0.0542 0.0825 0.453 B_Naive1 L2
ENSG00000125703 ATG4C 166159 sc-eQTL 7.57e-01 -0.0197 0.0636 0.453 B_Naive1 L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 6.10e-01 0.043 0.0843 0.453 B_Naive1 L2
ENSG00000162607 USP1 513994 sc-eQTL 4.81e-01 0.0523 0.0741 0.453 B_Naive1 L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 7.51e-01 0.0286 0.09 0.453 B_Naive1 L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.18e-01 -0.104 0.0843 0.451 B_Naive2 L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.86e-01 -0.0941 0.088 0.451 B_Naive2 L2
ENSG00000116641 DOCK7 261905 sc-eQTL 2.91e-01 -0.0896 0.0846 0.451 B_Naive2 L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.35e-01 0.0638 0.0815 0.451 B_Naive2 L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.78e-01 0.119 0.0882 0.451 B_Naive2 L2
ENSG00000162607 USP1 513994 sc-eQTL 4.00e-01 0.071 0.0841 0.451 B_Naive2 L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 5.10e-01 -0.0582 0.088 0.451 B_Naive2 L2
ENSG00000079739 PGM1 -643120 sc-eQTL 9.53e-02 0.146 0.0869 0.452 CD4_CTL L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.87e-02 -0.174 0.0917 0.452 CD4_CTL L2
ENSG00000116641 DOCK7 261905 sc-eQTL 3.71e-01 -0.0724 0.0807 0.452 CD4_CTL L2
ENSG00000125703 ATG4C 166159 sc-eQTL 7.21e-01 -0.0299 0.0837 0.452 CD4_CTL L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 2.47e-01 0.104 0.0892 0.452 CD4_CTL L2
ENSG00000162607 USP1 513994 sc-eQTL 6.23e-01 -0.0419 0.0851 0.452 CD4_CTL L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.21e-01 -0.00849 0.0851 0.452 CD4_CTL L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.54e-01 -0.0802 0.07 0.453 CD4_Naive L2
ENSG00000088035 ALG6 -417284 sc-eQTL 4.63e-01 -0.0561 0.0762 0.453 CD4_Naive L2
ENSG00000116641 DOCK7 261905 sc-eQTL 6.10e-01 0.0382 0.0749 0.453 CD4_Naive L2
ENSG00000125703 ATG4C 166159 sc-eQTL 3.86e-01 -0.0575 0.0662 0.453 CD4_Naive L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.41e-02 0.171 0.0801 0.453 CD4_Naive L2
ENSG00000162607 USP1 513994 sc-eQTL 3.20e-01 0.0615 0.0617 0.453 CD4_Naive L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 6.49e-01 0.0367 0.0804 0.453 CD4_Naive L2
ENSG00000079739 PGM1 -643120 sc-eQTL 3.86e-01 -0.0629 0.0724 0.453 CD4_TCM L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.95e-01 0.0882 0.0841 0.453 CD4_TCM L2
ENSG00000116641 DOCK7 261905 sc-eQTL 7.09e-01 0.0279 0.0747 0.453 CD4_TCM L2
ENSG00000125703 ATG4C 166159 sc-eQTL 7.01e-01 -0.028 0.0727 0.453 CD4_TCM L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 5.75e-01 0.0481 0.0857 0.453 CD4_TCM L2
ENSG00000162607 USP1 513994 sc-eQTL 7.03e-01 -0.0269 0.0703 0.453 CD4_TCM L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 1.32e-01 0.125 0.0825 0.453 CD4_TCM L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.07e-01 -0.107 0.0847 0.453 CD4_TEM L2
ENSG00000088035 ALG6 -417284 sc-eQTL 9.74e-01 0.00284 0.0855 0.453 CD4_TEM L2
ENSG00000116641 DOCK7 261905 sc-eQTL 8.94e-01 0.0112 0.0833 0.453 CD4_TEM L2
ENSG00000125703 ATG4C 166159 sc-eQTL 8.66e-01 -0.0137 0.0809 0.453 CD4_TEM L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 9.43e-01 0.00597 0.0835 0.453 CD4_TEM L2
ENSG00000162607 USP1 513994 sc-eQTL 1.97e-01 -0.102 0.0788 0.453 CD4_TEM L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.14e-01 -0.0871 0.0863 0.453 CD4_TEM L2
ENSG00000079739 PGM1 -643120 sc-eQTL 4.08e-02 0.159 0.0775 0.453 CD8_CTL L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.28e-01 -0.1 0.0829 0.453 CD8_CTL L2
ENSG00000116641 DOCK7 261905 sc-eQTL 2.51e-01 -0.0905 0.0787 0.453 CD8_CTL L2
ENSG00000125703 ATG4C 166159 sc-eQTL 5.52e-01 -0.05 0.0839 0.453 CD8_CTL L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.99e-01 0.0591 0.0873 0.453 CD8_CTL L2
ENSG00000162607 USP1 513994 sc-eQTL 2.17e-01 -0.0966 0.078 0.453 CD8_CTL L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.47e-01 0.0841 0.0893 0.453 CD8_CTL L2
ENSG00000079739 PGM1 -643120 sc-eQTL 3.84e-01 0.0698 0.08 0.453 CD8_Naive L2
ENSG00000088035 ALG6 -417284 sc-eQTL 6.13e-02 0.155 0.0822 0.453 CD8_Naive L2
ENSG00000116641 DOCK7 261905 sc-eQTL 1.27e-03 -0.273 0.0836 0.453 CD8_Naive L2
ENSG00000125703 ATG4C 166159 sc-eQTL 6.70e-01 0.0351 0.0822 0.453 CD8_Naive L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 7.28e-01 -0.029 0.0833 0.453 CD8_Naive L2
ENSG00000162607 USP1 513994 sc-eQTL 2.47e-01 -0.0816 0.0702 0.453 CD8_Naive L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 4.97e-01 0.0534 0.0785 0.453 CD8_Naive L2
ENSG00000079739 PGM1 -643120 sc-eQTL 5.84e-01 0.0485 0.0884 0.447 CD8_TCM L2
ENSG00000088035 ALG6 -417284 sc-eQTL 4.01e-01 -0.0753 0.0894 0.447 CD8_TCM L2
ENSG00000116641 DOCK7 261905 sc-eQTL 7.56e-01 0.0272 0.0874 0.447 CD8_TCM L2
ENSG00000125703 ATG4C 166159 sc-eQTL 8.98e-02 0.151 0.0887 0.447 CD8_TCM L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 5.42e-01 0.053 0.0868 0.447 CD8_TCM L2
ENSG00000162607 USP1 513994 sc-eQTL 4.65e-02 0.166 0.0827 0.447 CD8_TCM L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 5.23e-01 0.0565 0.0884 0.447 CD8_TCM L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.01e-01 0.112 0.0873 0.45 CD8_TEM L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.13e-01 0.0576 0.0879 0.45 CD8_TEM L2
ENSG00000116641 DOCK7 261905 sc-eQTL 3.64e-01 -0.0775 0.0851 0.45 CD8_TEM L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.35e-01 -0.064 0.0819 0.45 CD8_TEM L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.85e-01 0.117 0.0884 0.45 CD8_TEM L2
ENSG00000162607 USP1 513994 sc-eQTL 2.65e-01 -0.0944 0.0844 0.45 CD8_TEM L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 1.03e-01 0.14 0.0855 0.45 CD8_TEM L2
ENSG00000079739 PGM1 -643120 sc-eQTL 1.91e-01 0.108 0.0822 0.457 MAIT L2
ENSG00000088035 ALG6 -417284 sc-eQTL 6.69e-01 -0.035 0.0817 0.457 MAIT L2
ENSG00000116641 DOCK7 261905 sc-eQTL 8.42e-01 0.0157 0.0783 0.457 MAIT L2
ENSG00000125703 ATG4C 166159 sc-eQTL 7.97e-01 -0.0213 0.0826 0.457 MAIT L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.72e-01 -0.0738 0.0826 0.457 MAIT L2
ENSG00000162607 USP1 513994 sc-eQTL 8.92e-01 -0.0112 0.0821 0.457 MAIT L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.67e-01 0.00349 0.0852 0.457 MAIT L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.82e-01 -0.0895 0.083 0.451 NK_CD56bright L2
ENSG00000088035 ALG6 -417284 sc-eQTL 9.14e-01 -0.00918 0.0854 0.451 NK_CD56bright L2
ENSG00000116641 DOCK7 261905 sc-eQTL 5.65e-01 -0.0425 0.0739 0.451 NK_CD56bright L2
ENSG00000125703 ATG4C 166159 sc-eQTL 3.16e-01 -0.0828 0.0824 0.451 NK_CD56bright L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 8.86e-02 0.146 0.0854 0.451 NK_CD56bright L2
ENSG00000162607 USP1 513994 sc-eQTL 8.99e-01 -0.0113 0.0887 0.451 NK_CD56bright L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 7.10e-01 0.0316 0.0848 0.451 NK_CD56bright L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.25e-01 0.079 0.0649 0.455 NK_CD56dim L2
ENSG00000088035 ALG6 -417284 sc-eQTL 9.73e-01 0.00277 0.0827 0.455 NK_CD56dim L2
ENSG00000116641 DOCK7 261905 sc-eQTL 1.90e-01 -0.0943 0.0716 0.455 NK_CD56dim L2
ENSG00000125703 ATG4C 166159 sc-eQTL 8.37e-01 0.0151 0.073 0.455 NK_CD56dim L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.14e-01 -0.131 0.0826 0.455 NK_CD56dim L2
ENSG00000162607 USP1 513994 sc-eQTL 8.75e-01 -0.0127 0.0806 0.455 NK_CD56dim L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.61e-01 -0.00437 0.0898 0.455 NK_CD56dim L2
ENSG00000079739 PGM1 -643120 sc-eQTL 3.27e-01 0.0867 0.0881 0.459 NK_HLA L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.47e-01 -0.106 0.0913 0.459 NK_HLA L2
ENSG00000116641 DOCK7 261905 sc-eQTL 9.48e-01 -0.0046 0.0701 0.459 NK_HLA L2
ENSG00000125703 ATG4C 166159 sc-eQTL 5.95e-01 0.0433 0.0814 0.459 NK_HLA L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 7.82e-01 -0.0237 0.0855 0.459 NK_HLA L2
ENSG00000162607 USP1 513994 sc-eQTL 9.65e-01 0.00398 0.0895 0.459 NK_HLA L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 1.14e-01 0.129 0.081 0.459 NK_HLA L2
ENSG00000079739 PGM1 -643120 sc-eQTL 3.42e-01 0.0681 0.0715 0.455 NK_cytokine L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.35e-01 -0.0503 0.0809 0.455 NK_cytokine L2
ENSG00000116641 DOCK7 261905 sc-eQTL 5.49e-01 -0.0449 0.0749 0.455 NK_cytokine L2
ENSG00000125703 ATG4C 166159 sc-eQTL 5.13e-01 0.0503 0.0767 0.455 NK_cytokine L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.98e-01 -0.0672 0.0793 0.455 NK_cytokine L2
ENSG00000162607 USP1 513994 sc-eQTL 6.46e-01 0.0384 0.0835 0.455 NK_cytokine L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 4.10e-01 0.0698 0.0845 0.455 NK_cytokine L2
ENSG00000079739 PGM1 -643120 sc-eQTL 2.44e-01 0.114 0.0977 0.47 PB L2
ENSG00000088035 ALG6 -417284 sc-eQTL 1.02e-01 -0.168 0.102 0.47 PB L2
ENSG00000116641 DOCK7 261905 sc-eQTL 5.82e-01 0.0609 0.11 0.47 PB L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.13e-01 0.0789 0.096 0.47 PB L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 7.38e-01 -0.0322 0.096 0.47 PB L2
ENSG00000162607 USP1 513994 sc-eQTL 1.50e-01 0.137 0.0948 0.47 PB L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.27e-01 0.00974 0.105 0.47 PB L2
ENSG00000079739 PGM1 -643120 sc-eQTL 1.25e-01 -0.12 0.0778 0.45 Pro_T L2
ENSG00000088035 ALG6 -417284 sc-eQTL 9.86e-01 -0.00137 0.0796 0.45 Pro_T L2
ENSG00000116641 DOCK7 261905 sc-eQTL 8.95e-01 -0.0106 0.0798 0.45 Pro_T L2
ENSG00000125703 ATG4C 166159 sc-eQTL 2.37e-01 0.0826 0.0697 0.45 Pro_T L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.94e-01 -0.0597 0.07 0.45 Pro_T L2
ENSG00000162607 USP1 513994 sc-eQTL 8.95e-02 -0.0817 0.0479 0.45 Pro_T L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.96e-01 0.0692 0.0813 0.45 Pro_T L2
ENSG00000079739 PGM1 -643120 sc-eQTL 7.11e-02 -0.151 0.0834 0.453 Treg L2
ENSG00000088035 ALG6 -417284 sc-eQTL 8.57e-01 0.0162 0.0898 0.453 Treg L2
ENSG00000116641 DOCK7 261905 sc-eQTL 2.99e-01 -0.0857 0.0823 0.453 Treg L2
ENSG00000125703 ATG4C 166159 sc-eQTL 3.21e-01 -0.0837 0.0841 0.453 Treg L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.73e-01 0.0634 0.0881 0.453 Treg L2
ENSG00000162607 USP1 513994 sc-eQTL 7.63e-01 0.0257 0.0853 0.453 Treg L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 3.67e-02 0.176 0.0835 0.453 Treg L2
ENSG00000079739 PGM1 -643120 sc-eQTL 4.90e-02 -0.161 0.0815 0.454 cDC L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.08e-01 -0.105 0.0831 0.454 cDC L2
ENSG00000116641 DOCK7 261905 sc-eQTL 1.41e-01 -0.12 0.0814 0.454 cDC L2
ENSG00000125703 ATG4C 166159 sc-eQTL 9.52e-03 -0.183 0.0698 0.454 cDC L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.15e-01 -0.0735 0.09 0.454 cDC L2
ENSG00000162607 USP1 513994 sc-eQTL 1.28e-01 0.122 0.0798 0.454 cDC L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 8.19e-01 -0.0166 0.0724 0.454 cDC L2
ENSG00000079739 PGM1 -643120 sc-eQTL 4.15e-01 -0.0634 0.0776 0.453 cMono_IL1B L2
ENSG00000088035 ALG6 -417284 sc-eQTL 3.77e-01 0.0687 0.0777 0.453 cMono_IL1B L2
ENSG00000116641 DOCK7 261905 sc-eQTL 1.20e-01 -0.127 0.0816 0.453 cMono_IL1B L2
ENSG00000125703 ATG4C 166159 sc-eQTL 1.86e-01 0.0763 0.0575 0.453 cMono_IL1B L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.39e-01 0.121 0.0813 0.453 cMono_IL1B L2
ENSG00000162607 USP1 513994 sc-eQTL 2.88e-01 0.0767 0.0719 0.453 cMono_IL1B L2
ENSG00000240563 L1TD1 755442 sc-eQTL 8.18e-01 -0.0167 0.0724 0.453 cMono_IL1B L2
ENSG00000079739 PGM1 -643120 sc-eQTL 4.45e-02 -0.172 0.0853 0.453 cMono_S100A L2
ENSG00000088035 ALG6 -417284 sc-eQTL 4.00e-01 -0.0734 0.0871 0.453 cMono_S100A L2
ENSG00000116641 DOCK7 261905 sc-eQTL 2.98e-01 0.0842 0.0807 0.453 cMono_S100A L2
ENSG00000125703 ATG4C 166159 sc-eQTL 5.20e-01 0.0451 0.07 0.453 cMono_S100A L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 7.51e-02 0.14 0.0784 0.453 cMono_S100A L2
ENSG00000162607 USP1 513994 sc-eQTL 4.14e-01 0.0665 0.0812 0.453 cMono_S100A L2
ENSG00000240563 L1TD1 755442 sc-eQTL 9.01e-01 0.00844 0.0677 0.453 cMono_S100A L2
ENSG00000079739 PGM1 -643120 sc-eQTL 8.60e-01 0.0181 0.103 0.458 gdT L2
ENSG00000088035 ALG6 -417284 sc-eQTL 2.19e-01 0.134 0.109 0.458 gdT L2
ENSG00000116641 DOCK7 261905 sc-eQTL 2.72e-01 -0.118 0.107 0.458 gdT L2
ENSG00000125703 ATG4C 166159 sc-eQTL 9.51e-01 0.00634 0.102 0.458 gdT L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.77e-01 0.0963 0.109 0.458 gdT L2
ENSG00000162607 USP1 513994 sc-eQTL 5.34e-01 0.0641 0.103 0.458 gdT L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 5.08e-01 0.0709 0.107 0.458 gdT L2
ENSG00000079739 PGM1 -643120 sc-eQTL 8.14e-01 -0.0203 0.0865 0.456 intMono L2
ENSG00000088035 ALG6 -417284 sc-eQTL 6.77e-01 0.0336 0.0805 0.456 intMono L2
ENSG00000116641 DOCK7 261905 sc-eQTL 7.04e-01 -0.0312 0.0822 0.456 intMono L2
ENSG00000125703 ATG4C 166159 sc-eQTL 4.37e-01 -0.0611 0.0784 0.456 intMono L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 2.05e-02 0.199 0.0854 0.456 intMono L2
ENSG00000162607 USP1 513994 sc-eQTL 3.13e-01 0.0888 0.0878 0.456 intMono L2
ENSG00000240563 L1TD1 755442 sc-eQTL 6.26e-01 -0.0315 0.0647 0.456 intMono L2
ENSG00000079739 PGM1 -643120 sc-eQTL 6.70e-01 0.0334 0.0782 0.462 ncMono L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.74e-01 -0.0484 0.0859 0.462 ncMono L2
ENSG00000116641 DOCK7 261905 sc-eQTL 4.36e-01 -0.066 0.0845 0.462 ncMono L2
ENSG00000125703 ATG4C 166159 sc-eQTL 3.10e-01 0.0803 0.0788 0.462 ncMono L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.44e-01 0.121 0.0822 0.462 ncMono L2
ENSG00000162607 USP1 513994 sc-eQTL 2.85e-01 0.0904 0.0842 0.462 ncMono L2
ENSG00000240563 L1TD1 755442 sc-eQTL 8.07e-01 -0.0147 0.0599 0.462 ncMono L2
ENSG00000079739 PGM1 -643120 sc-eQTL 6.02e-01 -0.0498 0.0954 0.46 pDC L2
ENSG00000088035 ALG6 -417284 sc-eQTL 5.45e-01 -0.0564 0.0929 0.46 pDC L2
ENSG00000116641 DOCK7 261905 sc-eQTL 9.93e-01 -0.000805 0.095 0.46 pDC L2
ENSG00000125703 ATG4C 166159 sc-eQTL 2.35e-01 -0.101 0.0848 0.46 pDC L2
ENSG00000142856 ITGB3BP -643430 sc-eQTL 3.28e-01 0.0936 0.0954 0.46 pDC L2
ENSG00000162607 USP1 513994 sc-eQTL 9.47e-01 -0.00646 0.0975 0.46 pDC L2
ENSG00000203965 EFCAB7 -573081 sc-eQTL 4.65e-02 -0.168 0.0836 0.46 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643120 sc-eQTL 4.59e-01 -0.0587 0.079 0.453 B_Memory LOneK1K
ENSG00000088035 ALG6 -417284 sc-eQTL 1.29e-01 -0.133 0.087 0.453 B_Memory LOneK1K
ENSG00000116641 DOCK7 261905 sc-eQTL 1.22e-01 0.117 0.0755 0.453 B_Memory LOneK1K
ENSG00000125703 ATG4C 166159 sc-eQTL 6.22e-01 0.0303 0.0614 0.453 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.55e-02 0.161 0.0799 0.453 B_Memory LOneK1K
ENSG00000162607 USP1 513994 sc-eQTL 7.13e-01 0.0289 0.0783 0.453 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.05e-01 0.0101 0.0841 0.453 B_Memory LOneK1K
ENSG00000079739 PGM1 -643120 sc-eQTL 7.16e-01 -0.0303 0.0834 0.453 B_Naive LOneK1K
ENSG00000088035 ALG6 -417284 sc-eQTL 1.23e-01 0.132 0.0854 0.453 B_Naive LOneK1K
ENSG00000116641 DOCK7 261905 sc-eQTL 8.48e-02 -0.138 0.0796 0.453 B_Naive LOneK1K
ENSG00000125703 ATG4C 166159 sc-eQTL 6.70e-01 0.0261 0.0612 0.453 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -643430 sc-eQTL 5.36e-01 0.0536 0.0864 0.453 B_Naive LOneK1K
ENSG00000162607 USP1 513994 sc-eQTL 1.54e-01 0.106 0.074 0.453 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -573081 sc-eQTL 9.19e-01 0.00883 0.0869 0.453 B_Naive LOneK1K
ENSG00000079739 PGM1 -643120 sc-eQTL 4.26e-02 -0.162 0.0795 0.453 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -417284 sc-eQTL 9.79e-01 0.00209 0.0778 0.453 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 261905 sc-eQTL 4.41e-01 -0.0604 0.0782 0.453 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 166159 sc-eQTL 1.11e-01 0.0862 0.0538 0.453 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -643430 sc-eQTL 4.15e-02 0.163 0.0793 0.453 CD14_Mono LOneK1K
ENSG00000162607 USP1 513994 sc-eQTL 3.91e-01 0.0587 0.0683 0.453 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 755442 sc-eQTL 9.91e-01 -0.00086 0.0742 0.453 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -643120 sc-eQTL 1.78e-01 0.101 0.0747 0.453 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -417284 sc-eQTL 7.37e-01 -0.0286 0.0852 0.453 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 261905 sc-eQTL 1.86e-01 -0.111 0.0839 0.453 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 166159 sc-eQTL 9.05e-01 0.00861 0.0719 0.453 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -643430 sc-eQTL 5.90e-03 0.228 0.0819 0.453 CD16_Mono LOneK1K
ENSG00000162607 USP1 513994 sc-eQTL 1.02e-01 0.128 0.0779 0.453 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 755442 sc-eQTL 5.08e-01 -0.0354 0.0534 0.453 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -643120 sc-eQTL 1.29e-01 0.0975 0.0639 0.455 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -417284 sc-eQTL 3.55e-01 -0.0714 0.077 0.455 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 261905 sc-eQTL 7.87e-01 -0.0187 0.0691 0.455 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 166159 sc-eQTL 4.79e-01 0.0489 0.0689 0.455 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -643430 sc-eQTL 1.64e-01 -0.114 0.0814 0.455 NK_CD56dim LOneK1K
ENSG00000162607 USP1 513994 sc-eQTL 6.14e-01 0.0375 0.0742 0.455 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -573081 sc-eQTL 2.75e-01 0.0987 0.0901 0.455 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 166159 eQTL 0.0295 -0.036 0.0165 0.0 0.0 0.481

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina