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Genes within 1Mb (chr1:62949794:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643617 sc-eQTL 3.56e-01 0.0718 0.0777 0.468 B L1
ENSG00000088035 ALG6 -417781 sc-eQTL 7.52e-01 -0.0255 0.0806 0.468 B L1
ENSG00000116641 DOCK7 261408 sc-eQTL 8.04e-01 0.0201 0.0806 0.468 B L1
ENSG00000125703 ATG4C 165662 sc-eQTL 7.75e-01 0.016 0.056 0.468 B L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 7.76e-01 0.0254 0.0892 0.468 B L1
ENSG00000162607 USP1 513497 sc-eQTL 4.64e-02 -0.154 0.0767 0.468 B L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 9.53e-01 -0.00539 0.0914 0.468 B L1
ENSG00000079739 PGM1 -643617 sc-eQTL 1.05e-01 0.11 0.0676 0.468 CD4T L1
ENSG00000088035 ALG6 -417781 sc-eQTL 3.01e-01 -0.0776 0.0749 0.468 CD4T L1
ENSG00000116641 DOCK7 261408 sc-eQTL 7.57e-01 0.0235 0.076 0.468 CD4T L1
ENSG00000125703 ATG4C 165662 sc-eQTL 7.42e-01 0.0202 0.0613 0.468 CD4T L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 8.86e-01 -0.0125 0.0871 0.468 CD4T L1
ENSG00000162607 USP1 513497 sc-eQTL 8.40e-01 0.0121 0.0595 0.468 CD4T L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.46e-01 -0.0737 0.078 0.468 CD4T L1
ENSG00000079739 PGM1 -643617 sc-eQTL 4.46e-01 -0.0574 0.0752 0.468 CD8T L1
ENSG00000088035 ALG6 -417781 sc-eQTL 2.55e-01 -0.0945 0.0827 0.468 CD8T L1
ENSG00000116641 DOCK7 261408 sc-eQTL 2.04e-02 0.194 0.083 0.468 CD8T L1
ENSG00000125703 ATG4C 165662 sc-eQTL 6.26e-01 0.039 0.0798 0.468 CD8T L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 6.85e-01 0.0363 0.0893 0.468 CD8T L1
ENSG00000162607 USP1 513497 sc-eQTL 1.05e-01 0.113 0.0692 0.468 CD8T L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 1.45e-01 -0.13 0.0886 0.468 CD8T L1
ENSG00000079739 PGM1 -643617 sc-eQTL 1.09e-01 0.134 0.0836 0.468 DC L1
ENSG00000088035 ALG6 -417781 sc-eQTL 1.37e-01 0.129 0.0863 0.468 DC L1
ENSG00000116641 DOCK7 261408 sc-eQTL 6.84e-02 0.162 0.0882 0.468 DC L1
ENSG00000125703 ATG4C 165662 sc-eQTL 6.34e-03 0.188 0.0683 0.468 DC L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.17e-01 0.0789 0.0971 0.468 DC L1
ENSG00000162607 USP1 513497 sc-eQTL 8.25e-01 -0.0188 0.0849 0.468 DC L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 1.15e-02 0.213 0.0833 0.468 DC L1
ENSG00000079739 PGM1 -643617 sc-eQTL 1.41e-01 0.12 0.0814 0.468 Mono L1
ENSG00000088035 ALG6 -417781 sc-eQTL 5.42e-01 -0.052 0.0853 0.468 Mono L1
ENSG00000116641 DOCK7 261408 sc-eQTL 5.45e-01 0.05 0.0825 0.468 Mono L1
ENSG00000125703 ATG4C 165662 sc-eQTL 4.97e-01 -0.0379 0.0557 0.468 Mono L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.83e-01 -0.117 0.0878 0.468 Mono L1
ENSG00000162607 USP1 513497 sc-eQTL 5.14e-01 -0.0473 0.0723 0.468 Mono L1
ENSG00000240563 L1TD1 754945 sc-eQTL 6.87e-01 0.0273 0.0676 0.468 Mono L1
ENSG00000079739 PGM1 -643617 sc-eQTL 4.12e-01 -0.0565 0.0688 0.468 NK L1
ENSG00000088035 ALG6 -417781 sc-eQTL 2.05e-02 0.186 0.0798 0.468 NK L1
ENSG00000116641 DOCK7 261408 sc-eQTL 6.48e-01 0.0304 0.0665 0.468 NK L1
ENSG00000125703 ATG4C 165662 sc-eQTL 7.42e-01 -0.0236 0.0714 0.468 NK L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.21e-01 0.138 0.0883 0.468 NK L1
ENSG00000162607 USP1 513497 sc-eQTL 8.53e-01 -0.0148 0.0794 0.468 NK L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 2.27e-01 -0.117 0.0961 0.468 NK L1
ENSG00000079739 PGM1 -643617 sc-eQTL 6.79e-01 0.0323 0.078 0.468 Other_T L1
ENSG00000088035 ALG6 -417781 sc-eQTL 9.97e-01 -0.000289 0.0784 0.468 Other_T L1
ENSG00000116641 DOCK7 261408 sc-eQTL 1.68e-01 0.11 0.0796 0.468 Other_T L1
ENSG00000125703 ATG4C 165662 sc-eQTL 5.92e-01 0.0372 0.0692 0.468 Other_T L1
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.23e-01 0.0748 0.0612 0.468 Other_T L1
ENSG00000162607 USP1 513497 sc-eQTL 7.13e-01 -0.0196 0.0532 0.468 Other_T L1
ENSG00000203965 EFCAB7 -573578 sc-eQTL 8.11e-01 -0.0227 0.0947 0.468 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643617 sc-eQTL 6.21e-01 0.0537 0.109 0.467 B_Activated L2
ENSG00000088035 ALG6 -417781 sc-eQTL 1.25e-01 0.159 0.103 0.467 B_Activated L2
ENSG00000116641 DOCK7 261408 sc-eQTL 4.11e-01 -0.0797 0.0968 0.467 B_Activated L2
ENSG00000125703 ATG4C 165662 sc-eQTL 7.45e-01 0.0332 0.102 0.467 B_Activated L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 5.75e-01 0.056 0.0995 0.467 B_Activated L2
ENSG00000162607 USP1 513497 sc-eQTL 3.71e-01 0.0967 0.108 0.467 B_Activated L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.49e-01 -0.0884 0.0941 0.467 B_Activated L2
ENSG00000079739 PGM1 -643617 sc-eQTL 2.60e-01 0.106 0.0939 0.468 B_Intermediate L2
ENSG00000088035 ALG6 -417781 sc-eQTL 5.60e-01 0.0558 0.0956 0.468 B_Intermediate L2
ENSG00000116641 DOCK7 261408 sc-eQTL 7.30e-01 -0.0315 0.0914 0.468 B_Intermediate L2
ENSG00000125703 ATG4C 165662 sc-eQTL 4.88e-01 -0.0536 0.0773 0.468 B_Intermediate L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.58e-01 -0.104 0.0919 0.468 B_Intermediate L2
ENSG00000162607 USP1 513497 sc-eQTL 7.15e-02 0.165 0.0913 0.468 B_Intermediate L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 8.54e-01 0.0168 0.0913 0.468 B_Intermediate L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.02e-01 0.152 0.0923 0.47 B_Memory L2
ENSG00000088035 ALG6 -417781 sc-eQTL 6.29e-01 0.0457 0.0944 0.47 B_Memory L2
ENSG00000116641 DOCK7 261408 sc-eQTL 5.21e-01 -0.0569 0.0885 0.47 B_Memory L2
ENSG00000125703 ATG4C 165662 sc-eQTL 5.31e-01 0.0527 0.0841 0.47 B_Memory L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.32e-01 -0.0758 0.0962 0.47 B_Memory L2
ENSG00000162607 USP1 513497 sc-eQTL 3.62e-02 -0.203 0.0962 0.47 B_Memory L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 2.56e-01 0.109 0.0953 0.47 B_Memory L2
ENSG00000079739 PGM1 -643617 sc-eQTL 9.08e-01 0.0108 0.0937 0.468 B_Naive1 L2
ENSG00000088035 ALG6 -417781 sc-eQTL 4.84e-02 -0.185 0.0932 0.468 B_Naive1 L2
ENSG00000116641 DOCK7 261408 sc-eQTL 9.88e-01 -0.00139 0.0901 0.468 B_Naive1 L2
ENSG00000125703 ATG4C 165662 sc-eQTL 7.73e-01 0.02 0.0694 0.468 B_Naive1 L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 6.04e-01 0.0477 0.092 0.468 B_Naive1 L2
ENSG00000162607 USP1 513497 sc-eQTL 2.68e-01 -0.0897 0.0807 0.468 B_Naive1 L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 4.90e-01 -0.0678 0.0981 0.468 B_Naive1 L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.10e-01 0.148 0.0921 0.47 B_Naive2 L2
ENSG00000088035 ALG6 -417781 sc-eQTL 5.46e-01 -0.0584 0.0965 0.47 B_Naive2 L2
ENSG00000116641 DOCK7 261408 sc-eQTL 9.37e-01 -0.00738 0.0929 0.47 B_Naive2 L2
ENSG00000125703 ATG4C 165662 sc-eQTL 5.78e-01 -0.0498 0.0894 0.47 B_Naive2 L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 8.37e-01 -0.02 0.097 0.47 B_Naive2 L2
ENSG00000162607 USP1 513497 sc-eQTL 8.43e-01 -0.0183 0.0923 0.47 B_Naive2 L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 8.13e-01 -0.0229 0.0965 0.47 B_Naive2 L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.80e-01 -0.128 0.0951 0.47 CD4_CTL L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.36e-02 0.227 0.0997 0.47 CD4_CTL L2
ENSG00000116641 DOCK7 261408 sc-eQTL 5.34e-01 0.0549 0.0882 0.47 CD4_CTL L2
ENSG00000125703 ATG4C 165662 sc-eQTL 7.80e-01 -0.0255 0.0913 0.47 CD4_CTL L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 8.69e-01 -0.0161 0.0977 0.47 CD4_CTL L2
ENSG00000162607 USP1 513497 sc-eQTL 5.55e-01 0.0549 0.0929 0.47 CD4_CTL L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 8.25e-01 0.0205 0.0928 0.47 CD4_CTL L2
ENSG00000079739 PGM1 -643617 sc-eQTL 2.16e-01 0.0944 0.076 0.468 CD4_Naive L2
ENSG00000088035 ALG6 -417781 sc-eQTL 5.82e-01 -0.0456 0.0828 0.468 CD4_Naive L2
ENSG00000116641 DOCK7 261408 sc-eQTL 9.25e-01 -0.00771 0.0814 0.468 CD4_Naive L2
ENSG00000125703 ATG4C 165662 sc-eQTL 4.29e-01 0.0569 0.0719 0.468 CD4_Naive L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 5.57e-01 -0.0517 0.0879 0.468 CD4_Naive L2
ENSG00000162607 USP1 513497 sc-eQTL 9.13e-01 -0.00734 0.0672 0.468 CD4_Naive L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 4.00e-01 -0.0736 0.0872 0.468 CD4_Naive L2
ENSG00000079739 PGM1 -643617 sc-eQTL 4.56e-01 0.0591 0.0792 0.468 CD4_TCM L2
ENSG00000088035 ALG6 -417781 sc-eQTL 7.95e-02 -0.161 0.0914 0.468 CD4_TCM L2
ENSG00000116641 DOCK7 261408 sc-eQTL 7.33e-01 0.0278 0.0815 0.468 CD4_TCM L2
ENSG00000125703 ATG4C 165662 sc-eQTL 5.66e-01 0.0456 0.0794 0.468 CD4_TCM L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 8.71e-01 -0.0152 0.0936 0.468 CD4_TCM L2
ENSG00000162607 USP1 513497 sc-eQTL 6.73e-01 0.0324 0.0767 0.468 CD4_TCM L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 4.52e-01 -0.0681 0.0905 0.468 CD4_TCM L2
ENSG00000079739 PGM1 -643617 sc-eQTL 6.69e-02 0.169 0.0919 0.468 CD4_TEM L2
ENSG00000088035 ALG6 -417781 sc-eQTL 4.24e-01 -0.0745 0.093 0.468 CD4_TEM L2
ENSG00000116641 DOCK7 261408 sc-eQTL 3.94e-01 -0.0774 0.0906 0.468 CD4_TEM L2
ENSG00000125703 ATG4C 165662 sc-eQTL 3.41e-01 -0.084 0.088 0.468 CD4_TEM L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.36e-01 0.00737 0.091 0.468 CD4_TEM L2
ENSG00000162607 USP1 513497 sc-eQTL 1.36e-01 0.128 0.0858 0.468 CD4_TEM L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 7.47e-01 0.0305 0.0943 0.468 CD4_TEM L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.94e-01 -0.111 0.0849 0.468 CD8_CTL L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.77e-01 0.0985 0.0904 0.468 CD8_CTL L2
ENSG00000116641 DOCK7 261408 sc-eQTL 2.67e-01 0.0956 0.0858 0.468 CD8_CTL L2
ENSG00000125703 ATG4C 165662 sc-eQTL 2.25e-01 0.111 0.0913 0.468 CD8_CTL L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 6.27e-01 0.0463 0.0952 0.468 CD8_CTL L2
ENSG00000162607 USP1 513497 sc-eQTL 3.34e-01 0.0824 0.0851 0.468 CD8_CTL L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 4.90e-01 -0.0674 0.0974 0.468 CD8_CTL L2
ENSG00000079739 PGM1 -643617 sc-eQTL 8.11e-01 -0.0208 0.087 0.468 CD8_Naive L2
ENSG00000088035 ALG6 -417781 sc-eQTL 4.81e-02 -0.177 0.0893 0.468 CD8_Naive L2
ENSG00000116641 DOCK7 261408 sc-eQTL 2.77e-02 0.204 0.0921 0.468 CD8_Naive L2
ENSG00000125703 ATG4C 165662 sc-eQTL 6.20e-01 -0.0443 0.0894 0.468 CD8_Naive L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 6.16e-01 0.0454 0.0905 0.468 CD8_Naive L2
ENSG00000162607 USP1 513497 sc-eQTL 1.67e-01 0.106 0.0762 0.468 CD8_Naive L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 4.17e-01 -0.0694 0.0852 0.468 CD8_Naive L2
ENSG00000079739 PGM1 -643617 sc-eQTL 5.82e-01 -0.053 0.0962 0.479 CD8_TCM L2
ENSG00000088035 ALG6 -417781 sc-eQTL 9.08e-01 -0.0113 0.0975 0.479 CD8_TCM L2
ENSG00000116641 DOCK7 261408 sc-eQTL 6.13e-01 -0.0481 0.095 0.479 CD8_TCM L2
ENSG00000125703 ATG4C 165662 sc-eQTL 2.87e-02 -0.212 0.0961 0.479 CD8_TCM L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.49e-01 -0.109 0.0942 0.479 CD8_TCM L2
ENSG00000162607 USP1 513497 sc-eQTL 4.40e-01 -0.0703 0.0908 0.479 CD8_TCM L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 9.45e-01 -0.00668 0.0963 0.479 CD8_TCM L2
ENSG00000079739 PGM1 -643617 sc-eQTL 6.59e-01 0.0431 0.0976 0.466 CD8_TEM L2
ENSG00000088035 ALG6 -417781 sc-eQTL 6.07e-01 -0.0505 0.0979 0.466 CD8_TEM L2
ENSG00000116641 DOCK7 261408 sc-eQTL 1.54e-01 0.135 0.0945 0.466 CD8_TEM L2
ENSG00000125703 ATG4C 165662 sc-eQTL 9.05e-01 0.0109 0.0913 0.466 CD8_TEM L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.37e-01 -0.147 0.0983 0.466 CD8_TEM L2
ENSG00000162607 USP1 513497 sc-eQTL 7.05e-02 0.17 0.0935 0.466 CD8_TEM L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 1.30e-01 -0.145 0.0953 0.466 CD8_TEM L2
ENSG00000079739 PGM1 -643617 sc-eQTL 3.03e-01 -0.094 0.091 0.463 MAIT L2
ENSG00000088035 ALG6 -417781 sc-eQTL 1.54e-01 0.129 0.0899 0.463 MAIT L2
ENSG00000116641 DOCK7 261408 sc-eQTL 6.19e-01 0.0431 0.0865 0.463 MAIT L2
ENSG00000125703 ATG4C 165662 sc-eQTL 8.65e-01 -0.0155 0.0912 0.463 MAIT L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.84e-01 0.121 0.091 0.463 MAIT L2
ENSG00000162607 USP1 513497 sc-eQTL 5.05e-01 0.0606 0.0906 0.463 MAIT L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 7.12e-01 0.0348 0.0941 0.463 MAIT L2
ENSG00000079739 PGM1 -643617 sc-eQTL 5.73e-01 0.0506 0.0897 0.467 NK_CD56bright L2
ENSG00000088035 ALG6 -417781 sc-eQTL 3.35e-01 0.0887 0.0918 0.467 NK_CD56bright L2
ENSG00000116641 DOCK7 261408 sc-eQTL 9.33e-01 0.00672 0.0797 0.467 NK_CD56bright L2
ENSG00000125703 ATG4C 165662 sc-eQTL 4.34e-01 0.0698 0.0889 0.467 NK_CD56bright L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.51e-01 -0.133 0.0923 0.467 NK_CD56bright L2
ENSG00000162607 USP1 513497 sc-eQTL 9.60e-01 0.00484 0.0956 0.467 NK_CD56bright L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 9.27e-01 0.00844 0.0915 0.467 NK_CD56bright L2
ENSG00000079739 PGM1 -643617 sc-eQTL 2.53e-01 -0.0815 0.0711 0.468 NK_CD56dim L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.89e-01 0.096 0.0902 0.468 NK_CD56dim L2
ENSG00000116641 DOCK7 261408 sc-eQTL 1.95e-01 0.102 0.0784 0.468 NK_CD56dim L2
ENSG00000125703 ATG4C 165662 sc-eQTL 7.73e-01 -0.0231 0.0799 0.468 NK_CD56dim L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 1.32e-01 0.137 0.0905 0.468 NK_CD56dim L2
ENSG00000162607 USP1 513497 sc-eQTL 6.60e-01 0.0388 0.0882 0.468 NK_CD56dim L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.74e-01 -0.0875 0.0981 0.468 NK_CD56dim L2
ENSG00000079739 PGM1 -643617 sc-eQTL 7.43e-01 -0.0314 0.0958 0.459 NK_HLA L2
ENSG00000088035 ALG6 -417781 sc-eQTL 1.24e-01 0.153 0.0988 0.459 NK_HLA L2
ENSG00000116641 DOCK7 261408 sc-eQTL 8.96e-01 -0.00997 0.076 0.459 NK_HLA L2
ENSG00000125703 ATG4C 165662 sc-eQTL 3.44e-01 -0.0836 0.0882 0.459 NK_HLA L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.52e-01 0.106 0.0925 0.459 NK_HLA L2
ENSG00000162607 USP1 513497 sc-eQTL 3.88e-01 -0.0838 0.0969 0.459 NK_HLA L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 2.96e-01 -0.0923 0.0881 0.459 NK_HLA L2
ENSG00000079739 PGM1 -643617 sc-eQTL 6.15e-01 -0.0395 0.0784 0.468 NK_cytokine L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.70e-01 0.0977 0.0884 0.468 NK_cytokine L2
ENSG00000116641 DOCK7 261408 sc-eQTL 5.90e-01 -0.0442 0.082 0.468 NK_cytokine L2
ENSG00000125703 ATG4C 165662 sc-eQTL 4.72e-01 -0.0604 0.0839 0.468 NK_cytokine L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 3.85e-01 0.0755 0.0868 0.468 NK_cytokine L2
ENSG00000162607 USP1 513497 sc-eQTL 7.86e-01 -0.0248 0.0914 0.468 NK_cytokine L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 8.20e-01 0.0211 0.0927 0.468 NK_cytokine L2
ENSG00000079739 PGM1 -643617 sc-eQTL 7.79e-01 -0.0302 0.107 0.452 PB L2
ENSG00000088035 ALG6 -417781 sc-eQTL 8.98e-02 0.19 0.111 0.452 PB L2
ENSG00000116641 DOCK7 261408 sc-eQTL 7.96e-01 -0.0312 0.121 0.452 PB L2
ENSG00000125703 ATG4C 165662 sc-eQTL 8.43e-01 0.0209 0.105 0.452 PB L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.27e-01 -0.00965 0.105 0.452 PB L2
ENSG00000162607 USP1 513497 sc-eQTL 2.07e-01 -0.132 0.104 0.452 PB L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 5.82e-01 0.0635 0.115 0.452 PB L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.26e-01 0.13 0.0844 0.47 Pro_T L2
ENSG00000088035 ALG6 -417781 sc-eQTL 3.80e-01 0.0757 0.0862 0.47 Pro_T L2
ENSG00000116641 DOCK7 261408 sc-eQTL 8.15e-01 -0.0203 0.0866 0.47 Pro_T L2
ENSG00000125703 ATG4C 165662 sc-eQTL 7.04e-01 -0.0288 0.0758 0.47 Pro_T L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.01e-01 0.00948 0.0761 0.47 Pro_T L2
ENSG00000162607 USP1 513497 sc-eQTL 2.33e-01 0.0624 0.0521 0.47 Pro_T L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 2.75e-01 -0.0964 0.0881 0.47 Pro_T L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.41e-01 0.136 0.0922 0.468 Treg L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.22e-01 -0.121 0.0987 0.468 Treg L2
ENSG00000116641 DOCK7 261408 sc-eQTL 3.56e-01 0.0839 0.0908 0.468 Treg L2
ENSG00000125703 ATG4C 165662 sc-eQTL 6.08e-01 0.0477 0.0929 0.468 Treg L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.05e-01 0.0116 0.0972 0.468 Treg L2
ENSG00000162607 USP1 513497 sc-eQTL 5.15e-01 0.0612 0.094 0.468 Treg L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 5.03e-02 -0.181 0.0922 0.468 Treg L2
ENSG00000079739 PGM1 -643617 sc-eQTL 6.22e-02 0.167 0.0892 0.466 cDC L2
ENSG00000088035 ALG6 -417781 sc-eQTL 3.59e-01 0.0839 0.0911 0.466 cDC L2
ENSG00000116641 DOCK7 261408 sc-eQTL 8.72e-02 0.153 0.0889 0.466 cDC L2
ENSG00000125703 ATG4C 165662 sc-eQTL 6.50e-02 0.143 0.0771 0.466 cDC L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.32e-01 0.0776 0.0985 0.466 cDC L2
ENSG00000162607 USP1 513497 sc-eQTL 4.74e-01 -0.063 0.0877 0.466 cDC L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 9.24e-01 0.00762 0.0793 0.466 cDC L2
ENSG00000079739 PGM1 -643617 sc-eQTL 1.95e-01 0.109 0.0841 0.468 cMono_IL1B L2
ENSG00000088035 ALG6 -417781 sc-eQTL 3.00e-01 -0.0876 0.0843 0.468 cMono_IL1B L2
ENSG00000116641 DOCK7 261408 sc-eQTL 3.14e-01 0.0898 0.0889 0.468 cMono_IL1B L2
ENSG00000125703 ATG4C 165662 sc-eQTL 2.16e-01 -0.0775 0.0625 0.468 cMono_IL1B L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.43e-01 -0.104 0.0885 0.468 cMono_IL1B L2
ENSG00000162607 USP1 513497 sc-eQTL 6.57e-01 -0.0348 0.0783 0.468 cMono_IL1B L2
ENSG00000240563 L1TD1 754945 sc-eQTL 6.39e-01 0.0369 0.0786 0.468 cMono_IL1B L2
ENSG00000079739 PGM1 -643617 sc-eQTL 4.44e-02 0.188 0.0931 0.468 cMono_S100A L2
ENSG00000088035 ALG6 -417781 sc-eQTL 3.50e-01 -0.089 0.0951 0.468 cMono_S100A L2
ENSG00000116641 DOCK7 261408 sc-eQTL 3.11e-01 -0.0895 0.0881 0.468 cMono_S100A L2
ENSG00000125703 ATG4C 165662 sc-eQTL 6.30e-01 0.0369 0.0764 0.468 cMono_S100A L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.39e-01 -0.0668 0.0862 0.468 cMono_S100A L2
ENSG00000162607 USP1 513497 sc-eQTL 5.81e-01 -0.0491 0.0887 0.468 cMono_S100A L2
ENSG00000240563 L1TD1 754945 sc-eQTL 1.32e-01 -0.111 0.0735 0.468 cMono_S100A L2
ENSG00000079739 PGM1 -643617 sc-eQTL 5.11e-01 0.0745 0.113 0.461 gdT L2
ENSG00000088035 ALG6 -417781 sc-eQTL 1.47e-01 -0.175 0.12 0.461 gdT L2
ENSG00000116641 DOCK7 261408 sc-eQTL 8.54e-02 0.203 0.117 0.461 gdT L2
ENSG00000125703 ATG4C 165662 sc-eQTL 8.93e-01 -0.0152 0.113 0.461 gdT L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.92e-01 0.00123 0.12 0.461 gdT L2
ENSG00000162607 USP1 513497 sc-eQTL 7.60e-01 0.0347 0.113 0.461 gdT L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.17e-01 -0.118 0.118 0.461 gdT L2
ENSG00000079739 PGM1 -643617 sc-eQTL 4.59e-01 0.0702 0.0947 0.469 intMono L2
ENSG00000088035 ALG6 -417781 sc-eQTL 8.89e-01 0.0124 0.0883 0.469 intMono L2
ENSG00000116641 DOCK7 261408 sc-eQTL 1.98e-01 0.116 0.0898 0.469 intMono L2
ENSG00000125703 ATG4C 165662 sc-eQTL 3.36e-01 0.0829 0.0859 0.469 intMono L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 7.80e-02 -0.167 0.0941 0.469 intMono L2
ENSG00000162607 USP1 513497 sc-eQTL 1.29e-01 -0.146 0.0959 0.469 intMono L2
ENSG00000240563 L1TD1 754945 sc-eQTL 9.25e-01 -0.00669 0.0709 0.469 intMono L2
ENSG00000079739 PGM1 -643617 sc-eQTL 8.46e-01 0.0165 0.0852 0.459 ncMono L2
ENSG00000088035 ALG6 -417781 sc-eQTL 2.00e-01 0.12 0.0932 0.459 ncMono L2
ENSG00000116641 DOCK7 261408 sc-eQTL 6.96e-01 0.0361 0.0921 0.459 ncMono L2
ENSG00000125703 ATG4C 165662 sc-eQTL 9.50e-01 -0.00543 0.086 0.459 ncMono L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 5.11e-01 -0.0591 0.0899 0.459 ncMono L2
ENSG00000162607 USP1 513497 sc-eQTL 1.82e-01 -0.123 0.0915 0.459 ncMono L2
ENSG00000240563 L1TD1 754945 sc-eQTL 9.07e-01 -0.00759 0.0652 0.459 ncMono L2
ENSG00000079739 PGM1 -643617 sc-eQTL 7.44e-01 0.0347 0.106 0.466 pDC L2
ENSG00000088035 ALG6 -417781 sc-eQTL 9.32e-01 0.0088 0.103 0.466 pDC L2
ENSG00000116641 DOCK7 261408 sc-eQTL 5.12e-01 0.0693 0.105 0.466 pDC L2
ENSG00000125703 ATG4C 165662 sc-eQTL 2.23e-01 0.115 0.0943 0.466 pDC L2
ENSG00000142856 ITGB3BP -643927 sc-eQTL 6.33e-01 -0.0509 0.106 0.466 pDC L2
ENSG00000162607 USP1 513497 sc-eQTL 7.83e-01 0.0299 0.108 0.466 pDC L2
ENSG00000203965 EFCAB7 -573578 sc-eQTL 2.40e-01 0.111 0.0937 0.466 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -643617 sc-eQTL 1.60e-01 0.122 0.0868 0.468 B_Memory LOneK1K
ENSG00000088035 ALG6 -417781 sc-eQTL 1.74e-01 0.131 0.096 0.468 B_Memory LOneK1K
ENSG00000116641 DOCK7 261408 sc-eQTL 1.90e-01 -0.11 0.0833 0.468 B_Memory LOneK1K
ENSG00000125703 ATG4C 165662 sc-eQTL 9.15e-01 -0.00722 0.0676 0.468 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.18e-01 -0.11 0.0885 0.468 B_Memory LOneK1K
ENSG00000162607 USP1 513497 sc-eQTL 7.35e-01 -0.0292 0.0863 0.468 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -573578 sc-eQTL 5.67e-01 0.0531 0.0925 0.468 B_Memory LOneK1K
ENSG00000079739 PGM1 -643617 sc-eQTL 3.50e-01 0.0856 0.0913 0.468 B_Naive LOneK1K
ENSG00000088035 ALG6 -417781 sc-eQTL 6.63e-02 -0.173 0.0935 0.468 B_Naive LOneK1K
ENSG00000116641 DOCK7 261408 sc-eQTL 8.38e-01 0.0181 0.088 0.468 B_Naive LOneK1K
ENSG00000125703 ATG4C 165662 sc-eQTL 8.49e-01 -0.0128 0.0671 0.468 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.99e-01 0.0642 0.0948 0.468 B_Naive LOneK1K
ENSG00000162607 USP1 513497 sc-eQTL 1.06e-01 -0.132 0.081 0.468 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.24e-01 -0.0942 0.0952 0.468 B_Naive LOneK1K
ENSG00000079739 PGM1 -643617 sc-eQTL 3.96e-02 0.178 0.0861 0.468 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -417781 sc-eQTL 3.03e-01 -0.0867 0.084 0.468 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 261408 sc-eQTL 5.06e-01 0.0564 0.0847 0.468 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 165662 sc-eQTL 4.83e-01 -0.0411 0.0585 0.468 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -643927 sc-eQTL 2.21e-01 -0.106 0.0864 0.468 CD14_Mono LOneK1K
ENSG00000162607 USP1 513497 sc-eQTL 9.65e-01 -0.0033 0.074 0.468 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 754945 sc-eQTL 9.86e-01 0.00139 0.0803 0.468 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -643617 sc-eQTL 5.14e-01 -0.0529 0.081 0.47 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -417781 sc-eQTL 2.34e-01 0.11 0.0918 0.47 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 261408 sc-eQTL 9.03e-02 0.154 0.0905 0.47 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 165662 sc-eQTL 8.52e-01 0.0145 0.0777 0.47 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -643927 sc-eQTL 4.51e-02 -0.18 0.0893 0.47 CD16_Mono LOneK1K
ENSG00000162607 USP1 513497 sc-eQTL 1.05e-01 -0.137 0.0842 0.47 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 754945 sc-eQTL 5.82e-01 0.0319 0.0578 0.47 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -643617 sc-eQTL 4.14e-01 -0.0573 0.07 0.468 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -417781 sc-eQTL 5.37e-02 0.162 0.0834 0.468 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 261408 sc-eQTL 9.64e-01 -0.00339 0.0754 0.468 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 165662 sc-eQTL 3.74e-01 -0.0669 0.0751 0.468 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -643927 sc-eQTL 9.83e-02 0.147 0.0886 0.468 NK_CD56dim LOneK1K
ENSG00000162607 USP1 513497 sc-eQTL 6.63e-01 -0.0353 0.0809 0.468 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -573578 sc-eQTL 3.11e-01 -0.0999 0.0982 0.468 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 165662 eQTL 0.0143 0.0411 0.0167 0.0 0.0 0.421
ENSG00000132855 ANGPTL3 352307 pQTL 0.014 0.0705 0.0287 0.0 0.0 0.43
ENSG00000162607 USP1 513497 eQTL 0.00874 0.0337 0.0128 0.0 0.0 0.421

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina