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Genes within 1Mb (chr1:62947896:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -645515 sc-eQTL 3.27e-01 0.074 0.0753 0.481 B L1
ENSG00000088035 ALG6 -419679 sc-eQTL 7.45e-01 -0.0255 0.0782 0.481 B L1
ENSG00000116641 DOCK7 259510 sc-eQTL 1.00e+00 -3.34e-05 0.0782 0.481 B L1
ENSG00000125703 ATG4C 163764 sc-eQTL 8.61e-01 0.00954 0.0544 0.481 B L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 6.94e-01 0.0341 0.0865 0.481 B L1
ENSG00000162607 USP1 511599 sc-eQTL 4.89e-02 -0.147 0.0744 0.481 B L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 8.56e-01 0.0161 0.0886 0.481 B L1
ENSG00000079739 PGM1 -645515 sc-eQTL 1.13e-01 0.105 0.0657 0.481 CD4T L1
ENSG00000088035 ALG6 -419679 sc-eQTL 3.44e-01 -0.0691 0.0728 0.481 CD4T L1
ENSG00000116641 DOCK7 259510 sc-eQTL 9.40e-01 0.00554 0.0739 0.481 CD4T L1
ENSG00000125703 ATG4C 163764 sc-eQTL 8.18e-01 0.0138 0.0596 0.481 CD4T L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 7.15e-01 0.031 0.0847 0.481 CD4T L1
ENSG00000162607 USP1 511599 sc-eQTL 9.16e-01 0.00615 0.0579 0.481 CD4T L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 4.75e-01 -0.0543 0.0759 0.481 CD4T L1
ENSG00000079739 PGM1 -645515 sc-eQTL 4.60e-01 -0.0541 0.0731 0.481 CD8T L1
ENSG00000088035 ALG6 -419679 sc-eQTL 5.30e-01 -0.0506 0.0806 0.481 CD8T L1
ENSG00000116641 DOCK7 259510 sc-eQTL 7.79e-02 0.144 0.0811 0.481 CD8T L1
ENSG00000125703 ATG4C 163764 sc-eQTL 5.81e-01 0.0428 0.0776 0.481 CD8T L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 6.46e-01 0.0399 0.0868 0.481 CD8T L1
ENSG00000162607 USP1 511599 sc-eQTL 1.02e-01 0.11 0.0672 0.481 CD8T L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.40e-01 -0.127 0.0861 0.481 CD8T L1
ENSG00000079739 PGM1 -645515 sc-eQTL 1.01e-01 0.133 0.0808 0.482 DC L1
ENSG00000088035 ALG6 -419679 sc-eQTL 2.50e-01 0.0965 0.0837 0.482 DC L1
ENSG00000116641 DOCK7 259510 sc-eQTL 3.69e-02 0.179 0.0851 0.482 DC L1
ENSG00000125703 ATG4C 163764 sc-eQTL 5.14e-03 0.187 0.066 0.482 DC L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 4.17e-01 0.0765 0.0939 0.482 DC L1
ENSG00000162607 USP1 511599 sc-eQTL 8.75e-01 0.013 0.0822 0.482 DC L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.30e-02 0.202 0.0806 0.482 DC L1
ENSG00000079739 PGM1 -645515 sc-eQTL 1.61e-01 0.111 0.079 0.481 Mono L1
ENSG00000088035 ALG6 -419679 sc-eQTL 5.83e-01 -0.0455 0.0828 0.481 Mono L1
ENSG00000116641 DOCK7 259510 sc-eQTL 4.66e-01 0.0585 0.08 0.481 Mono L1
ENSG00000125703 ATG4C 163764 sc-eQTL 6.38e-01 -0.0255 0.0541 0.481 Mono L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.69e-01 -0.0769 0.0854 0.481 Mono L1
ENSG00000162607 USP1 511599 sc-eQTL 6.58e-01 -0.0312 0.0702 0.481 Mono L1
ENSG00000240563 L1TD1 753047 sc-eQTL 5.31e-01 0.0412 0.0655 0.481 Mono L1
ENSG00000079739 PGM1 -645515 sc-eQTL 5.15e-01 -0.0436 0.0668 0.481 NK L1
ENSG00000088035 ALG6 -419679 sc-eQTL 2.20e-02 0.179 0.0774 0.481 NK L1
ENSG00000116641 DOCK7 259510 sc-eQTL 7.77e-01 0.0183 0.0646 0.481 NK L1
ENSG00000125703 ATG4C 163764 sc-eQTL 5.94e-01 -0.037 0.0693 0.481 NK L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.37e-01 0.128 0.0857 0.481 NK L1
ENSG00000162607 USP1 511599 sc-eQTL 7.61e-01 -0.0235 0.077 0.481 NK L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 7.99e-02 -0.164 0.0929 0.481 NK L1
ENSG00000079739 PGM1 -645515 sc-eQTL 8.15e-01 0.0177 0.0758 0.481 Other_T L1
ENSG00000088035 ALG6 -419679 sc-eQTL 9.09e-01 0.00873 0.0762 0.481 Other_T L1
ENSG00000116641 DOCK7 259510 sc-eQTL 1.08e-01 0.125 0.0773 0.481 Other_T L1
ENSG00000125703 ATG4C 163764 sc-eQTL 5.83e-01 0.037 0.0673 0.481 Other_T L1
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.81e-01 0.0798 0.0595 0.481 Other_T L1
ENSG00000162607 USP1 511599 sc-eQTL 4.27e-01 -0.0411 0.0517 0.481 Other_T L1
ENSG00000203965 EFCAB7 -575476 sc-eQTL 7.63e-01 -0.0278 0.0921 0.481 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -645515 sc-eQTL 6.20e-01 0.0523 0.105 0.48 B_Activated L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.48e-01 0.146 0.1 0.48 B_Activated L2
ENSG00000116641 DOCK7 259510 sc-eQTL 3.75e-01 -0.0834 0.0937 0.48 B_Activated L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.51e-01 0.0315 0.0988 0.48 B_Activated L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.38e-01 0.0926 0.0963 0.48 B_Activated L2
ENSG00000162607 USP1 511599 sc-eQTL 2.25e-01 0.127 0.104 0.48 B_Activated L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 6.09e-01 -0.0468 0.0913 0.48 B_Activated L2
ENSG00000079739 PGM1 -645515 sc-eQTL 2.75e-01 0.0996 0.091 0.481 B_Intermediate L2
ENSG00000088035 ALG6 -419679 sc-eQTL 7.37e-01 0.0312 0.0927 0.481 B_Intermediate L2
ENSG00000116641 DOCK7 259510 sc-eQTL 7.52e-01 -0.028 0.0885 0.481 B_Intermediate L2
ENSG00000125703 ATG4C 163764 sc-eQTL 6.93e-01 -0.0296 0.0749 0.481 B_Intermediate L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.57e-01 -0.0823 0.0891 0.481 B_Intermediate L2
ENSG00000162607 USP1 511599 sc-eQTL 1.26e-01 0.136 0.0886 0.481 B_Intermediate L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 7.64e-01 0.0265 0.0884 0.481 B_Intermediate L2
ENSG00000079739 PGM1 -645515 sc-eQTL 6.29e-02 0.167 0.0891 0.483 B_Memory L2
ENSG00000088035 ALG6 -419679 sc-eQTL 6.43e-01 0.0424 0.0913 0.483 B_Memory L2
ENSG00000116641 DOCK7 259510 sc-eQTL 3.18e-01 -0.0855 0.0855 0.483 B_Memory L2
ENSG00000125703 ATG4C 163764 sc-eQTL 3.93e-01 0.0696 0.0813 0.483 B_Memory L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 4.57e-01 -0.0694 0.093 0.483 B_Memory L2
ENSG00000162607 USP1 511599 sc-eQTL 3.66e-02 -0.196 0.093 0.483 B_Memory L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 2.28e-01 0.111 0.0922 0.483 B_Memory L2
ENSG00000079739 PGM1 -645515 sc-eQTL 8.95e-01 0.012 0.091 0.481 B_Naive1 L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.02e-01 -0.149 0.0908 0.481 B_Naive1 L2
ENSG00000116641 DOCK7 259510 sc-eQTL 8.56e-01 -0.0159 0.0875 0.481 B_Naive1 L2
ENSG00000125703 ATG4C 163764 sc-eQTL 9.29e-01 0.00602 0.0674 0.481 B_Naive1 L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 5.62e-01 0.052 0.0894 0.481 B_Naive1 L2
ENSG00000162607 USP1 511599 sc-eQTL 4.02e-01 -0.0659 0.0785 0.481 B_Naive1 L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 5.82e-01 -0.0525 0.0954 0.481 B_Naive1 L2
ENSG00000079739 PGM1 -645515 sc-eQTL 1.26e-01 0.137 0.0893 0.483 B_Naive2 L2
ENSG00000088035 ALG6 -419679 sc-eQTL 3.45e-01 -0.0885 0.0935 0.483 B_Naive2 L2
ENSG00000116641 DOCK7 259510 sc-eQTL 7.53e-01 -0.0284 0.09 0.483 B_Naive2 L2
ENSG00000125703 ATG4C 163764 sc-eQTL 4.89e-01 -0.0601 0.0866 0.483 B_Naive2 L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.61e-01 -0.00464 0.094 0.483 B_Naive2 L2
ENSG00000162607 USP1 511599 sc-eQTL 8.99e-01 -0.0113 0.0895 0.483 B_Naive2 L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 5.89e-01 -0.0506 0.0935 0.483 B_Naive2 L2
ENSG00000079739 PGM1 -645515 sc-eQTL 2.58e-01 -0.105 0.0921 0.484 CD4_CTL L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.87e-02 0.228 0.0963 0.484 CD4_CTL L2
ENSG00000116641 DOCK7 259510 sc-eQTL 6.63e-01 0.0373 0.0853 0.484 CD4_CTL L2
ENSG00000125703 ATG4C 163764 sc-eQTL 4.56e-01 -0.0659 0.0882 0.484 CD4_CTL L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.16e-01 -0.00995 0.0945 0.484 CD4_CTL L2
ENSG00000162607 USP1 511599 sc-eQTL 5.97e-01 0.0476 0.0899 0.484 CD4_CTL L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 9.49e-01 0.0057 0.0898 0.484 CD4_CTL L2
ENSG00000079739 PGM1 -645515 sc-eQTL 2.18e-01 0.0913 0.0739 0.481 CD4_Naive L2
ENSG00000088035 ALG6 -419679 sc-eQTL 5.56e-01 -0.0474 0.0805 0.481 CD4_Naive L2
ENSG00000116641 DOCK7 259510 sc-eQTL 9.89e-01 -0.00105 0.0792 0.481 CD4_Naive L2
ENSG00000125703 ATG4C 163764 sc-eQTL 3.82e-01 0.0612 0.0699 0.481 CD4_Naive L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.61e-01 -0.00415 0.0855 0.481 CD4_Naive L2
ENSG00000162607 USP1 511599 sc-eQTL 9.52e-01 -0.00392 0.0653 0.481 CD4_Naive L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 7.15e-01 -0.0311 0.0849 0.481 CD4_Naive L2
ENSG00000079739 PGM1 -645515 sc-eQTL 5.34e-01 0.048 0.077 0.481 CD4_TCM L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.42e-01 -0.131 0.0891 0.481 CD4_TCM L2
ENSG00000116641 DOCK7 259510 sc-eQTL 9.16e-01 0.00837 0.0793 0.481 CD4_TCM L2
ENSG00000125703 ATG4C 163764 sc-eQTL 8.68e-01 0.0129 0.0773 0.481 CD4_TCM L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.17e-01 0.00945 0.0911 0.481 CD4_TCM L2
ENSG00000162607 USP1 511599 sc-eQTL 5.80e-01 0.0414 0.0746 0.481 CD4_TCM L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 4.38e-01 -0.0684 0.088 0.481 CD4_TCM L2
ENSG00000079739 PGM1 -645515 sc-eQTL 8.34e-02 0.156 0.0897 0.481 CD4_TEM L2
ENSG00000088035 ALG6 -419679 sc-eQTL 6.16e-01 -0.0456 0.0907 0.481 CD4_TEM L2
ENSG00000116641 DOCK7 259510 sc-eQTL 2.06e-01 -0.112 0.0882 0.481 CD4_TEM L2
ENSG00000125703 ATG4C 163764 sc-eQTL 5.74e-01 -0.0483 0.0859 0.481 CD4_TEM L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.08e-01 0.0103 0.0887 0.481 CD4_TEM L2
ENSG00000162607 USP1 511599 sc-eQTL 2.22e-01 0.103 0.0838 0.481 CD4_TEM L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 8.96e-01 0.012 0.0919 0.481 CD4_TEM L2
ENSG00000079739 PGM1 -645515 sc-eQTL 1.98e-01 -0.107 0.0825 0.481 CD8_CTL L2
ENSG00000088035 ALG6 -419679 sc-eQTL 2.88e-01 0.0936 0.0878 0.481 CD8_CTL L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.40e-01 0.0646 0.0835 0.481 CD8_CTL L2
ENSG00000125703 ATG4C 163764 sc-eQTL 3.66e-01 0.0805 0.0888 0.481 CD8_CTL L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 5.54e-01 0.0548 0.0924 0.481 CD8_CTL L2
ENSG00000162607 USP1 511599 sc-eQTL 3.58e-01 0.0762 0.0827 0.481 CD8_CTL L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 5.00e-01 -0.0639 0.0946 0.481 CD8_CTL L2
ENSG00000079739 PGM1 -645515 sc-eQTL 7.61e-01 -0.0259 0.0849 0.481 CD8_Naive L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.97e-01 -0.113 0.0875 0.481 CD8_Naive L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.36e-02 0.183 0.09 0.481 CD8_Naive L2
ENSG00000125703 ATG4C 163764 sc-eQTL 8.60e-01 -0.0154 0.0872 0.481 CD8_Naive L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 5.79e-01 0.049 0.0882 0.481 CD8_Naive L2
ENSG00000162607 USP1 511599 sc-eQTL 1.30e-01 0.113 0.0742 0.481 CD8_Naive L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 6.14e-01 -0.042 0.0832 0.481 CD8_Naive L2
ENSG00000079739 PGM1 -645515 sc-eQTL 5.55e-01 -0.0557 0.0942 0.493 CD8_TCM L2
ENSG00000088035 ALG6 -419679 sc-eQTL 8.56e-01 -0.0173 0.0954 0.493 CD8_TCM L2
ENSG00000116641 DOCK7 259510 sc-eQTL 6.14e-01 -0.047 0.0931 0.493 CD8_TCM L2
ENSG00000125703 ATG4C 163764 sc-eQTL 4.82e-02 -0.188 0.0943 0.493 CD8_TCM L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.51e-01 -0.133 0.0921 0.493 CD8_TCM L2
ENSG00000162607 USP1 511599 sc-eQTL 6.75e-01 -0.0374 0.0891 0.493 CD8_TCM L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 7.59e-01 -0.029 0.0943 0.493 CD8_TCM L2
ENSG00000079739 PGM1 -645515 sc-eQTL 4.56e-01 0.0701 0.0939 0.479 CD8_TEM L2
ENSG00000088035 ALG6 -419679 sc-eQTL 9.44e-01 0.00667 0.0944 0.479 CD8_TEM L2
ENSG00000116641 DOCK7 259510 sc-eQTL 1.70e-01 0.125 0.091 0.479 CD8_TEM L2
ENSG00000125703 ATG4C 163764 sc-eQTL 8.47e-01 0.0169 0.0879 0.479 CD8_TEM L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 2.12e-01 -0.119 0.0948 0.479 CD8_TEM L2
ENSG00000162607 USP1 511599 sc-eQTL 8.63e-02 0.155 0.0901 0.479 CD8_TEM L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.54e-01 -0.132 0.0918 0.479 CD8_TEM L2
ENSG00000079739 PGM1 -645515 sc-eQTL 4.02e-01 -0.0741 0.0883 0.476 MAIT L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.00e-01 0.144 0.087 0.476 MAIT L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.32e-01 0.066 0.0838 0.476 MAIT L2
ENSG00000125703 ATG4C 163764 sc-eQTL 9.02e-01 -0.0109 0.0885 0.476 MAIT L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.21e-01 0.137 0.0881 0.476 MAIT L2
ENSG00000162607 USP1 511599 sc-eQTL 7.50e-01 0.0281 0.0879 0.476 MAIT L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 8.22e-01 0.0205 0.0913 0.476 MAIT L2
ENSG00000079739 PGM1 -645515 sc-eQTL 8.34e-01 0.0183 0.0875 0.48 NK_CD56bright L2
ENSG00000088035 ALG6 -419679 sc-eQTL 3.24e-01 0.0884 0.0895 0.48 NK_CD56bright L2
ENSG00000116641 DOCK7 259510 sc-eQTL 9.01e-01 -0.00971 0.0777 0.48 NK_CD56bright L2
ENSG00000125703 ATG4C 163764 sc-eQTL 4.84e-01 0.0608 0.0867 0.48 NK_CD56bright L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.65e-01 -0.125 0.09 0.48 NK_CD56bright L2
ENSG00000162607 USP1 511599 sc-eQTL 5.46e-01 -0.0564 0.0931 0.48 NK_CD56bright L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 8.05e-01 0.0221 0.0892 0.48 NK_CD56bright L2
ENSG00000079739 PGM1 -645515 sc-eQTL 3.35e-01 -0.0667 0.069 0.481 NK_CD56dim L2
ENSG00000088035 ALG6 -419679 sc-eQTL 3.70e-01 0.0787 0.0876 0.481 NK_CD56dim L2
ENSG00000116641 DOCK7 259510 sc-eQTL 1.99e-01 0.0979 0.076 0.481 NK_CD56dim L2
ENSG00000125703 ATG4C 163764 sc-eQTL 6.32e-01 -0.0371 0.0775 0.481 NK_CD56dim L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 2.13e-01 0.11 0.0879 0.481 NK_CD56dim L2
ENSG00000162607 USP1 511599 sc-eQTL 9.88e-01 0.00126 0.0856 0.481 NK_CD56dim L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.73e-01 -0.13 0.0949 0.481 NK_CD56dim L2
ENSG00000079739 PGM1 -645515 sc-eQTL 6.88e-01 -0.0375 0.0934 0.473 NK_HLA L2
ENSG00000088035 ALG6 -419679 sc-eQTL 8.91e-02 0.164 0.0962 0.473 NK_HLA L2
ENSG00000116641 DOCK7 259510 sc-eQTL 8.26e-01 -0.0163 0.0741 0.473 NK_HLA L2
ENSG00000125703 ATG4C 163764 sc-eQTL 2.90e-01 -0.0912 0.0859 0.473 NK_HLA L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.29e-01 0.0884 0.0903 0.473 NK_HLA L2
ENSG00000162607 USP1 511599 sc-eQTL 5.16e-01 -0.0615 0.0946 0.473 NK_HLA L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 2.27e-01 -0.104 0.0858 0.473 NK_HLA L2
ENSG00000079739 PGM1 -645515 sc-eQTL 9.04e-01 -0.00922 0.076 0.481 NK_cytokine L2
ENSG00000088035 ALG6 -419679 sc-eQTL 2.23e-01 0.105 0.0856 0.481 NK_cytokine L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.08e-01 -0.0659 0.0795 0.481 NK_cytokine L2
ENSG00000125703 ATG4C 163764 sc-eQTL 5.17e-01 -0.0528 0.0814 0.481 NK_cytokine L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 2.94e-01 0.0886 0.0841 0.481 NK_cytokine L2
ENSG00000162607 USP1 511599 sc-eQTL 8.60e-01 0.0157 0.0887 0.481 NK_cytokine L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 9.67e-01 -0.00377 0.0899 0.481 NK_cytokine L2
ENSG00000079739 PGM1 -645515 sc-eQTL 6.57e-01 -0.0464 0.104 0.463 PB L2
ENSG00000088035 ALG6 -419679 sc-eQTL 8.20e-02 0.19 0.108 0.463 PB L2
ENSG00000116641 DOCK7 259510 sc-eQTL 6.75e-01 -0.0493 0.117 0.463 PB L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.69e-01 0.03 0.102 0.463 PB L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.95e-01 -0.000663 0.102 0.463 PB L2
ENSG00000162607 USP1 511599 sc-eQTL 2.42e-01 -0.119 0.101 0.463 PB L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 5.03e-01 0.0751 0.112 0.463 PB L2
ENSG00000079739 PGM1 -645515 sc-eQTL 1.14e-01 0.13 0.0817 0.483 Pro_T L2
ENSG00000088035 ALG6 -419679 sc-eQTL 3.76e-01 0.074 0.0835 0.483 Pro_T L2
ENSG00000116641 DOCK7 259510 sc-eQTL 7.04e-01 -0.0319 0.0839 0.483 Pro_T L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.20e-01 -0.0264 0.0735 0.483 Pro_T L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 8.71e-01 0.012 0.0737 0.483 Pro_T L2
ENSG00000162607 USP1 511599 sc-eQTL 4.15e-01 0.0413 0.0506 0.483 Pro_T L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 4.05e-01 -0.0713 0.0855 0.483 Pro_T L2
ENSG00000079739 PGM1 -645515 sc-eQTL 1.35e-01 0.134 0.0894 0.481 Treg L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.79e-01 -0.129 0.0957 0.481 Treg L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.28e-01 0.07 0.0881 0.481 Treg L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.00e-01 0.0347 0.0902 0.481 Treg L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 7.67e-01 0.028 0.0943 0.481 Treg L2
ENSG00000162607 USP1 511599 sc-eQTL 6.26e-01 0.0445 0.0912 0.481 Treg L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 3.37e-02 -0.191 0.0893 0.481 Treg L2
ENSG00000079739 PGM1 -645515 sc-eQTL 1.73e-01 0.119 0.0871 0.478 cDC L2
ENSG00000088035 ALG6 -419679 sc-eQTL 3.59e-01 0.0815 0.0885 0.478 cDC L2
ENSG00000116641 DOCK7 259510 sc-eQTL 5.64e-02 0.166 0.0862 0.478 cDC L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.73e-02 0.133 0.075 0.478 cDC L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.73e-01 0.0854 0.0956 0.478 cDC L2
ENSG00000162607 USP1 511599 sc-eQTL 7.20e-01 -0.0307 0.0853 0.478 cDC L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 8.44e-01 0.0152 0.077 0.478 cDC L2
ENSG00000079739 PGM1 -645515 sc-eQTL 2.12e-01 0.103 0.0819 0.481 cMono_IL1B L2
ENSG00000088035 ALG6 -419679 sc-eQTL 2.48e-01 -0.0951 0.082 0.481 cMono_IL1B L2
ENSG00000116641 DOCK7 259510 sc-eQTL 3.11e-01 0.0879 0.0866 0.481 cMono_IL1B L2
ENSG00000125703 ATG4C 163764 sc-eQTL 3.62e-01 -0.0557 0.0609 0.481 cMono_IL1B L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 3.22e-01 -0.0855 0.0862 0.481 cMono_IL1B L2
ENSG00000162607 USP1 511599 sc-eQTL 7.13e-01 -0.0281 0.0762 0.481 cMono_IL1B L2
ENSG00000240563 L1TD1 753047 sc-eQTL 5.02e-01 0.0514 0.0765 0.481 cMono_IL1B L2
ENSG00000079739 PGM1 -645515 sc-eQTL 6.48e-02 0.168 0.0902 0.481 cMono_S100A L2
ENSG00000088035 ALG6 -419679 sc-eQTL 5.19e-01 -0.0595 0.0921 0.481 cMono_S100A L2
ENSG00000116641 DOCK7 259510 sc-eQTL 3.53e-01 -0.0794 0.0853 0.481 cMono_S100A L2
ENSG00000125703 ATG4C 163764 sc-eQTL 5.42e-01 0.0452 0.074 0.481 cMono_S100A L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 8.01e-01 -0.0211 0.0835 0.481 cMono_S100A L2
ENSG00000162607 USP1 511599 sc-eQTL 6.37e-01 -0.0406 0.0859 0.481 cMono_S100A L2
ENSG00000240563 L1TD1 753047 sc-eQTL 1.48e-01 -0.103 0.0712 0.481 cMono_S100A L2
ENSG00000079739 PGM1 -645515 sc-eQTL 7.07e-01 0.0409 0.108 0.476 gdT L2
ENSG00000088035 ALG6 -419679 sc-eQTL 1.78e-01 -0.156 0.115 0.476 gdT L2
ENSG00000116641 DOCK7 259510 sc-eQTL 1.03e-01 0.185 0.112 0.476 gdT L2
ENSG00000125703 ATG4C 163764 sc-eQTL 7.01e-01 -0.0417 0.108 0.476 gdT L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.62e-01 0.00543 0.115 0.476 gdT L2
ENSG00000162607 USP1 511599 sc-eQTL 9.80e-01 -0.00271 0.109 0.476 gdT L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 2.96e-01 -0.118 0.113 0.476 gdT L2
ENSG00000079739 PGM1 -645515 sc-eQTL 5.57e-01 0.0543 0.0922 0.482 intMono L2
ENSG00000088035 ALG6 -419679 sc-eQTL 8.79e-01 0.0131 0.086 0.482 intMono L2
ENSG00000116641 DOCK7 259510 sc-eQTL 1.85e-01 0.116 0.0874 0.482 intMono L2
ENSG00000125703 ATG4C 163764 sc-eQTL 5.79e-01 0.0465 0.0838 0.482 intMono L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.37e-01 -0.137 0.0918 0.482 intMono L2
ENSG00000162607 USP1 511599 sc-eQTL 1.60e-01 -0.132 0.0935 0.482 intMono L2
ENSG00000240563 L1TD1 753047 sc-eQTL 8.04e-01 -0.0172 0.0691 0.482 intMono L2
ENSG00000079739 PGM1 -645515 sc-eQTL 9.55e-01 -0.00464 0.0827 0.471 ncMono L2
ENSG00000088035 ALG6 -419679 sc-eQTL 2.60e-01 0.102 0.0906 0.471 ncMono L2
ENSG00000116641 DOCK7 259510 sc-eQTL 8.06e-01 0.022 0.0894 0.471 ncMono L2
ENSG00000125703 ATG4C 163764 sc-eQTL 9.53e-01 -0.0049 0.0836 0.471 ncMono L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 7.21e-01 -0.0312 0.0874 0.471 ncMono L2
ENSG00000162607 USP1 511599 sc-eQTL 1.79e-01 -0.12 0.0889 0.471 ncMono L2
ENSG00000240563 L1TD1 753047 sc-eQTL 8.85e-01 -0.00915 0.0633 0.471 ncMono L2
ENSG00000079739 PGM1 -645515 sc-eQTL 4.29e-01 0.0817 0.103 0.48 pDC L2
ENSG00000088035 ALG6 -419679 sc-eQTL 6.94e-01 -0.0397 0.1 0.48 pDC L2
ENSG00000116641 DOCK7 259510 sc-eQTL 4.36e-01 0.08 0.102 0.48 pDC L2
ENSG00000125703 ATG4C 163764 sc-eQTL 2.94e-01 0.0967 0.0918 0.48 pDC L2
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.35e-01 -0.00851 0.103 0.48 pDC L2
ENSG00000162607 USP1 511599 sc-eQTL 8.35e-01 0.022 0.105 0.48 pDC L2
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.90e-01 0.12 0.091 0.48 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -645515 sc-eQTL 1.17e-01 0.132 0.0839 0.481 B_Memory LOneK1K
ENSG00000088035 ALG6 -419679 sc-eQTL 2.25e-01 0.113 0.093 0.481 B_Memory LOneK1K
ENSG00000116641 DOCK7 259510 sc-eQTL 1.47e-01 -0.117 0.0806 0.481 B_Memory LOneK1K
ENSG00000125703 ATG4C 163764 sc-eQTL 7.75e-01 0.0187 0.0655 0.481 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -645825 sc-eQTL 2.88e-01 -0.0914 0.0858 0.481 B_Memory LOneK1K
ENSG00000162607 USP1 511599 sc-eQTL 6.45e-01 -0.0385 0.0835 0.481 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -575476 sc-eQTL 4.26e-01 0.0715 0.0896 0.481 B_Memory LOneK1K
ENSG00000079739 PGM1 -645515 sc-eQTL 3.69e-01 0.0798 0.0886 0.481 B_Naive LOneK1K
ENSG00000088035 ALG6 -419679 sc-eQTL 7.36e-02 -0.163 0.0907 0.481 B_Naive LOneK1K
ENSG00000116641 DOCK7 259510 sc-eQTL 9.64e-01 -0.00388 0.0854 0.481 B_Naive LOneK1K
ENSG00000125703 ATG4C 163764 sc-eQTL 5.90e-01 -0.0352 0.0651 0.481 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -645825 sc-eQTL 4.14e-01 0.0752 0.092 0.481 B_Naive LOneK1K
ENSG00000162607 USP1 511599 sc-eQTL 1.40e-01 -0.117 0.0787 0.481 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -575476 sc-eQTL 2.85e-01 -0.099 0.0923 0.481 B_Naive LOneK1K
ENSG00000079739 PGM1 -645515 sc-eQTL 4.93e-02 0.165 0.0836 0.481 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -419679 sc-eQTL 3.39e-01 -0.0782 0.0816 0.481 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 259510 sc-eQTL 4.33e-01 0.0646 0.0822 0.481 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 163764 sc-eQTL 6.75e-01 -0.0239 0.0569 0.481 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -645825 sc-eQTL 4.07e-01 -0.0699 0.0841 0.481 CD14_Mono LOneK1K
ENSG00000162607 USP1 511599 sc-eQTL 9.85e-01 0.00137 0.0719 0.481 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 753047 sc-eQTL 8.70e-01 0.0128 0.078 0.481 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -645515 sc-eQTL 4.29e-01 -0.0626 0.079 0.483 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -419679 sc-eQTL 2.34e-01 0.107 0.0896 0.483 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 259510 sc-eQTL 1.06e-01 0.143 0.0883 0.483 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 163764 sc-eQTL 9.74e-01 0.00248 0.0758 0.483 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -645825 sc-eQTL 9.59e-02 -0.146 0.0874 0.483 CD16_Mono LOneK1K
ENSG00000162607 USP1 511599 sc-eQTL 1.35e-01 -0.123 0.0822 0.483 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 753047 sc-eQTL 5.96e-01 0.03 0.0564 0.483 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -645515 sc-eQTL 5.64e-01 -0.0393 0.0679 0.481 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -419679 sc-eQTL 7.20e-02 0.146 0.081 0.481 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 259510 sc-eQTL 8.71e-01 -0.0119 0.0731 0.481 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 163764 sc-eQTL 2.89e-01 -0.0774 0.0728 0.481 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -645825 sc-eQTL 1.25e-01 0.133 0.086 0.481 NK_CD56dim LOneK1K
ENSG00000162607 USP1 511599 sc-eQTL 6.86e-01 -0.0317 0.0785 0.481 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -575476 sc-eQTL 1.19e-01 -0.149 0.095 0.481 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 163764 eQTL 0.0192 0.0395 0.0168 0.0 0.0 0.435
ENSG00000132855 ANGPTL3 350409 pQTL 0.0257 0.0639 0.0286 0.00108 0.0 0.444
ENSG00000162607 USP1 511599 eQTL 0.0182 0.0305 0.0129 0.0 0.0 0.435

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 \N -645515 3.27e-07 1.76e-07 6.86e-08 2.35e-07 1.1e-07 8.85e-08 2.5e-07 5.84e-08 1.85e-07 1.11e-07 1.86e-07 1.48e-07 2.55e-07 8.55e-08 6.27e-08 9.48e-08 5.27e-08 2.15e-07 7.42e-08 6.02e-08 1.27e-07 1.81e-07 1.75e-07 4.27e-08 2.48e-07 1.51e-07 1.25e-07 1.42e-07 1.34e-07 1.36e-07 1.26e-07 4.69e-08 3.74e-08 1.02e-07 6.98e-08 3.24e-08 5.26e-08 7.1e-08 6.45e-08 6.55e-08 4.58e-08 1.62e-07 3.25e-08 1.08e-08 3.66e-08 9.86e-09 7.52e-08 0.0 4.94e-08
ENSG00000203965 \N -575476 4.37e-07 2.5e-07 7.76e-08 2.53e-07 1.07e-07 1.25e-07 3.25e-07 7.52e-08 2.04e-07 1.37e-07 2.62e-07 1.86e-07 3.77e-07 8.55e-08 8.45e-08 1.14e-07 8.42e-08 2.75e-07 8.93e-08 8.87e-08 1.39e-07 2.15e-07 2.04e-07 4.91e-08 3.41e-07 1.86e-07 1.57e-07 1.61e-07 1.58e-07 1.89e-07 1.52e-07 5.32e-08 4.86e-08 1.01e-07 1.54e-07 4.86e-08 6.39e-08 5.8e-08 4.9e-08 8.09e-08 3.6e-08 2.41e-07 3.2e-08 1.55e-08 5.84e-08 8.94e-09 9.25e-08 0.0 4.55e-08