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Genes within 1Mb (chr1:62947391:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -646020 sc-eQTL 3.85e-01 0.0657 0.0756 0.479 B L1
ENSG00000088035 ALG6 -420184 sc-eQTL 7.33e-01 -0.0268 0.0784 0.479 B L1
ENSG00000116641 DOCK7 259005 sc-eQTL 9.19e-01 0.00794 0.0784 0.479 B L1
ENSG00000125703 ATG4C 163259 sc-eQTL 8.79e-01 0.00833 0.0545 0.479 B L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 6.36e-01 0.0412 0.0867 0.479 B L1
ENSG00000162607 USP1 511094 sc-eQTL 4.70e-02 -0.149 0.0746 0.479 B L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 8.89e-01 0.0125 0.0889 0.479 B L1
ENSG00000079739 PGM1 -646020 sc-eQTL 1.17e-01 0.104 0.0658 0.479 CD4T L1
ENSG00000088035 ALG6 -420184 sc-eQTL 3.27e-01 -0.0716 0.0729 0.479 CD4T L1
ENSG00000116641 DOCK7 259005 sc-eQTL 9.45e-01 0.00515 0.0739 0.479 CD4T L1
ENSG00000125703 ATG4C 163259 sc-eQTL 8.52e-01 0.0112 0.0597 0.479 CD4T L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 7.59e-01 0.026 0.0847 0.479 CD4T L1
ENSG00000162607 USP1 511094 sc-eQTL 9.53e-01 -0.00343 0.0579 0.479 CD4T L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 4.94e-01 -0.052 0.076 0.479 CD4T L1
ENSG00000079739 PGM1 -646020 sc-eQTL 4.49e-01 -0.0556 0.0733 0.479 CD8T L1
ENSG00000088035 ALG6 -420184 sc-eQTL 5.01e-01 -0.0545 0.0808 0.479 CD8T L1
ENSG00000116641 DOCK7 259005 sc-eQTL 9.00e-02 0.139 0.0814 0.479 CD8T L1
ENSG00000125703 ATG4C 163259 sc-eQTL 5.10e-01 0.0513 0.0778 0.479 CD8T L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 5.79e-01 0.0484 0.087 0.479 CD8T L1
ENSG00000162607 USP1 511094 sc-eQTL 1.24e-01 0.104 0.0675 0.479 CD8T L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.14e-01 -0.137 0.0863 0.479 CD8T L1
ENSG00000079739 PGM1 -646020 sc-eQTL 7.24e-02 0.146 0.0809 0.48 DC L1
ENSG00000088035 ALG6 -420184 sc-eQTL 1.95e-01 0.109 0.0839 0.48 DC L1
ENSG00000116641 DOCK7 259005 sc-eQTL 5.04e-02 0.168 0.0855 0.48 DC L1
ENSG00000125703 ATG4C 163259 sc-eQTL 4.16e-03 0.192 0.0662 0.48 DC L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.96e-01 0.0801 0.0942 0.48 DC L1
ENSG00000162607 USP1 511094 sc-eQTL 9.89e-01 0.00117 0.0824 0.48 DC L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.10e-02 0.208 0.0808 0.48 DC L1
ENSG00000079739 PGM1 -646020 sc-eQTL 1.51e-01 0.114 0.0791 0.479 Mono L1
ENSG00000088035 ALG6 -420184 sc-eQTL 5.90e-01 -0.0447 0.0829 0.479 Mono L1
ENSG00000116641 DOCK7 259005 sc-eQTL 5.28e-01 0.0507 0.0801 0.479 Mono L1
ENSG00000125703 ATG4C 163259 sc-eQTL 5.58e-01 -0.0318 0.0542 0.479 Mono L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 4.11e-01 -0.0704 0.0855 0.479 Mono L1
ENSG00000162607 USP1 511094 sc-eQTL 6.45e-01 -0.0324 0.0703 0.479 Mono L1
ENSG00000240563 L1TD1 752542 sc-eQTL 5.31e-01 0.0412 0.0656 0.479 Mono L1
ENSG00000079739 PGM1 -646020 sc-eQTL 4.20e-01 -0.0541 0.067 0.479 NK L1
ENSG00000088035 ALG6 -420184 sc-eQTL 1.50e-02 0.19 0.0775 0.479 NK L1
ENSG00000116641 DOCK7 259005 sc-eQTL 8.41e-01 0.013 0.0648 0.479 NK L1
ENSG00000125703 ATG4C 163259 sc-eQTL 7.66e-01 -0.0208 0.0695 0.479 NK L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.23e-01 0.133 0.086 0.479 NK L1
ENSG00000162607 USP1 511094 sc-eQTL 6.56e-01 -0.0344 0.0772 0.479 NK L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.26e-01 -0.143 0.0933 0.479 NK L1
ENSG00000079739 PGM1 -646020 sc-eQTL 7.12e-01 0.0282 0.0762 0.479 Other_T L1
ENSG00000088035 ALG6 -420184 sc-eQTL 9.58e-01 0.004 0.0766 0.479 Other_T L1
ENSG00000116641 DOCK7 259005 sc-eQTL 1.32e-01 0.117 0.0777 0.479 Other_T L1
ENSG00000125703 ATG4C 163259 sc-eQTL 6.33e-01 0.0323 0.0676 0.479 Other_T L1
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.22e-01 0.0733 0.0598 0.479 Other_T L1
ENSG00000162607 USP1 511094 sc-eQTL 4.62e-01 -0.0383 0.0519 0.479 Other_T L1
ENSG00000203965 EFCAB7 -575981 sc-eQTL 7.00e-01 -0.0357 0.0926 0.479 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -646020 sc-eQTL 6.22e-01 0.0522 0.106 0.477 B_Activated L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.55e-01 0.144 0.101 0.477 B_Activated L2
ENSG00000116641 DOCK7 259005 sc-eQTL 2.63e-01 -0.106 0.0939 0.477 B_Activated L2
ENSG00000125703 ATG4C 163259 sc-eQTL 6.56e-01 0.0443 0.0991 0.477 B_Activated L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.37e-01 0.0929 0.0966 0.477 B_Activated L2
ENSG00000162607 USP1 511094 sc-eQTL 3.19e-01 0.105 0.105 0.477 B_Activated L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 4.81e-01 -0.0647 0.0915 0.477 B_Activated L2
ENSG00000079739 PGM1 -646020 sc-eQTL 3.02e-01 0.0946 0.0914 0.479 B_Intermediate L2
ENSG00000088035 ALG6 -420184 sc-eQTL 6.36e-01 0.0441 0.093 0.479 B_Intermediate L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.57e-01 -0.0275 0.0888 0.479 B_Intermediate L2
ENSG00000125703 ATG4C 163259 sc-eQTL 6.07e-01 -0.0387 0.0752 0.479 B_Intermediate L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.80e-01 -0.0787 0.0894 0.479 B_Intermediate L2
ENSG00000162607 USP1 511094 sc-eQTL 1.16e-01 0.14 0.0889 0.479 B_Intermediate L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 6.44e-01 0.041 0.0887 0.479 B_Intermediate L2
ENSG00000079739 PGM1 -646020 sc-eQTL 7.59e-02 0.16 0.0896 0.481 B_Memory L2
ENSG00000088035 ALG6 -420184 sc-eQTL 6.19e-01 0.0458 0.0918 0.481 B_Memory L2
ENSG00000116641 DOCK7 259005 sc-eQTL 3.55e-01 -0.0796 0.0859 0.481 B_Memory L2
ENSG00000125703 ATG4C 163259 sc-eQTL 4.51e-01 0.0617 0.0817 0.481 B_Memory L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 4.60e-01 -0.0692 0.0935 0.481 B_Memory L2
ENSG00000162607 USP1 511094 sc-eQTL 3.30e-02 -0.201 0.0935 0.481 B_Memory L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 2.32e-01 0.111 0.0927 0.481 B_Memory L2
ENSG00000079739 PGM1 -646020 sc-eQTL 9.71e-01 0.00335 0.0912 0.479 B_Naive1 L2
ENSG00000088035 ALG6 -420184 sc-eQTL 7.70e-02 -0.162 0.0909 0.479 B_Naive1 L2
ENSG00000116641 DOCK7 259005 sc-eQTL 9.00e-01 -0.011 0.0878 0.479 B_Naive1 L2
ENSG00000125703 ATG4C 163259 sc-eQTL 9.54e-01 0.00391 0.0676 0.479 B_Naive1 L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 4.98e-01 0.0609 0.0896 0.479 B_Naive1 L2
ENSG00000162607 USP1 511094 sc-eQTL 4.06e-01 -0.0656 0.0787 0.479 B_Naive1 L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 5.90e-01 -0.0516 0.0956 0.479 B_Naive1 L2
ENSG00000079739 PGM1 -646020 sc-eQTL 1.54e-01 0.128 0.0896 0.481 B_Naive2 L2
ENSG00000088035 ALG6 -420184 sc-eQTL 4.11e-01 -0.0772 0.0938 0.481 B_Naive2 L2
ENSG00000116641 DOCK7 259005 sc-eQTL 8.34e-01 -0.019 0.0903 0.481 B_Naive2 L2
ENSG00000125703 ATG4C 163259 sc-eQTL 5.15e-01 -0.0567 0.0868 0.481 B_Naive2 L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 8.93e-01 -0.0127 0.0943 0.481 B_Naive2 L2
ENSG00000162607 USP1 511094 sc-eQTL 8.46e-01 -0.0175 0.0897 0.481 B_Naive2 L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 5.82e-01 -0.0517 0.0937 0.481 B_Naive2 L2
ENSG00000079739 PGM1 -646020 sc-eQTL 2.54e-01 -0.106 0.0924 0.482 CD4_CTL L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.92e-02 0.228 0.0967 0.482 CD4_CTL L2
ENSG00000116641 DOCK7 259005 sc-eQTL 6.75e-01 0.0359 0.0857 0.482 CD4_CTL L2
ENSG00000125703 ATG4C 163259 sc-eQTL 4.63e-01 -0.0651 0.0886 0.482 CD4_CTL L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 8.25e-01 -0.021 0.0948 0.482 CD4_CTL L2
ENSG00000162607 USP1 511094 sc-eQTL 5.73e-01 0.0509 0.0902 0.482 CD4_CTL L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 9.01e-01 0.0113 0.0901 0.482 CD4_CTL L2
ENSG00000079739 PGM1 -646020 sc-eQTL 2.05e-01 0.094 0.074 0.479 CD4_Naive L2
ENSG00000088035 ALG6 -420184 sc-eQTL 5.54e-01 -0.0477 0.0806 0.479 CD4_Naive L2
ENSG00000116641 DOCK7 259005 sc-eQTL 9.66e-01 -0.00338 0.0793 0.479 CD4_Naive L2
ENSG00000125703 ATG4C 163259 sc-eQTL 4.32e-01 0.0551 0.07 0.479 CD4_Naive L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.34e-01 -0.00709 0.0857 0.479 CD4_Naive L2
ENSG00000162607 USP1 511094 sc-eQTL 8.01e-01 -0.0165 0.0654 0.479 CD4_Naive L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 7.13e-01 -0.0314 0.085 0.479 CD4_Naive L2
ENSG00000079739 PGM1 -646020 sc-eQTL 5.95e-01 0.041 0.0771 0.479 CD4_TCM L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.09e-01 -0.143 0.0891 0.479 CD4_TCM L2
ENSG00000116641 DOCK7 259005 sc-eQTL 9.60e-01 0.00398 0.0794 0.479 CD4_TCM L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.78e-01 0.0218 0.0773 0.479 CD4_TCM L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.33e-01 0.00766 0.0911 0.479 CD4_TCM L2
ENSG00000162607 USP1 511094 sc-eQTL 6.99e-01 0.0289 0.0747 0.479 CD4_TCM L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 4.28e-01 -0.0699 0.0881 0.479 CD4_TCM L2
ENSG00000079739 PGM1 -646020 sc-eQTL 9.59e-02 0.15 0.0899 0.479 CD4_TEM L2
ENSG00000088035 ALG6 -420184 sc-eQTL 6.00e-01 -0.0477 0.0909 0.479 CD4_TEM L2
ENSG00000116641 DOCK7 259005 sc-eQTL 2.62e-01 -0.0994 0.0884 0.479 CD4_TEM L2
ENSG00000125703 ATG4C 163259 sc-eQTL 4.27e-01 -0.0685 0.086 0.479 CD4_TEM L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.32e-01 0.00764 0.0889 0.479 CD4_TEM L2
ENSG00000162607 USP1 511094 sc-eQTL 2.44e-01 0.0981 0.084 0.479 CD4_TEM L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 9.58e-01 0.00481 0.0921 0.479 CD4_TEM L2
ENSG00000079739 PGM1 -646020 sc-eQTL 2.24e-01 -0.101 0.0828 0.479 CD8_CTL L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.98e-01 0.092 0.0882 0.479 CD8_CTL L2
ENSG00000116641 DOCK7 259005 sc-eQTL 4.63e-01 0.0616 0.0838 0.479 CD8_CTL L2
ENSG00000125703 ATG4C 163259 sc-eQTL 3.27e-01 0.0876 0.0891 0.479 CD8_CTL L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 4.83e-01 0.0652 0.0927 0.479 CD8_CTL L2
ENSG00000162607 USP1 511094 sc-eQTL 4.08e-01 0.0688 0.083 0.479 CD8_CTL L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 4.77e-01 -0.0676 0.095 0.479 CD8_CTL L2
ENSG00000079739 PGM1 -646020 sc-eQTL 6.51e-01 -0.0385 0.0851 0.479 CD8_Naive L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.96e-01 -0.114 0.0878 0.479 CD8_Naive L2
ENSG00000116641 DOCK7 259005 sc-eQTL 4.55e-02 0.182 0.0902 0.479 CD8_Naive L2
ENSG00000125703 ATG4C 163259 sc-eQTL 9.14e-01 -0.00941 0.0874 0.479 CD8_Naive L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 5.44e-01 0.0537 0.0885 0.479 CD8_Naive L2
ENSG00000162607 USP1 511094 sc-eQTL 1.43e-01 0.11 0.0745 0.479 CD8_Naive L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 5.36e-01 -0.0517 0.0834 0.479 CD8_Naive L2
ENSG00000079739 PGM1 -646020 sc-eQTL 5.52e-01 -0.0562 0.0944 0.491 CD8_TCM L2
ENSG00000088035 ALG6 -420184 sc-eQTL 8.76e-01 -0.015 0.0956 0.491 CD8_TCM L2
ENSG00000116641 DOCK7 259005 sc-eQTL 5.12e-01 -0.0612 0.0932 0.491 CD8_TCM L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.11e-02 -0.172 0.0947 0.491 CD8_TCM L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.72e-01 -0.127 0.0923 0.491 CD8_TCM L2
ENSG00000162607 USP1 511094 sc-eQTL 6.41e-01 -0.0417 0.0892 0.491 CD8_TCM L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 8.38e-01 -0.0193 0.0945 0.491 CD8_TCM L2
ENSG00000079739 PGM1 -646020 sc-eQTL 5.16e-01 0.0615 0.0946 0.477 CD8_TEM L2
ENSG00000088035 ALG6 -420184 sc-eQTL 9.88e-01 0.00142 0.095 0.477 CD8_TEM L2
ENSG00000116641 DOCK7 259005 sc-eQTL 1.48e-01 0.133 0.0916 0.477 CD8_TEM L2
ENSG00000125703 ATG4C 163259 sc-eQTL 8.33e-01 0.0186 0.0885 0.477 CD8_TEM L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.25e-01 -0.116 0.0955 0.477 CD8_TEM L2
ENSG00000162607 USP1 511094 sc-eQTL 8.73e-02 0.156 0.0908 0.477 CD8_TEM L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.25e-01 -0.142 0.0924 0.477 CD8_TEM L2
ENSG00000079739 PGM1 -646020 sc-eQTL 3.45e-01 -0.0837 0.0885 0.474 MAIT L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.69e-01 0.121 0.0873 0.474 MAIT L2
ENSG00000116641 DOCK7 259005 sc-eQTL 5.82e-01 0.0463 0.084 0.474 MAIT L2
ENSG00000125703 ATG4C 163259 sc-eQTL 8.01e-01 -0.0224 0.0886 0.474 MAIT L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.27e-01 0.135 0.0883 0.474 MAIT L2
ENSG00000162607 USP1 511094 sc-eQTL 7.36e-01 0.0297 0.0881 0.474 MAIT L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 8.66e-01 0.0154 0.0914 0.474 MAIT L2
ENSG00000079739 PGM1 -646020 sc-eQTL 7.86e-01 0.0239 0.0878 0.478 NK_CD56bright L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.82e-01 0.0969 0.0898 0.478 NK_CD56bright L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.95e-01 -0.0203 0.078 0.478 NK_CD56bright L2
ENSG00000125703 ATG4C 163259 sc-eQTL 4.81e-01 0.0615 0.0871 0.478 NK_CD56bright L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.23e-01 -0.11 0.0904 0.478 NK_CD56bright L2
ENSG00000162607 USP1 511094 sc-eQTL 6.81e-01 -0.0386 0.0936 0.478 NK_CD56bright L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 9.04e-01 0.0109 0.0895 0.478 NK_CD56bright L2
ENSG00000079739 PGM1 -646020 sc-eQTL 2.73e-01 -0.076 0.0691 0.478 NK_CD56dim L2
ENSG00000088035 ALG6 -420184 sc-eQTL 3.82e-01 0.077 0.0878 0.478 NK_CD56dim L2
ENSG00000116641 DOCK7 259005 sc-eQTL 2.03e-01 0.0974 0.0763 0.478 NK_CD56dim L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.82e-01 -0.0216 0.0777 0.478 NK_CD56dim L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.02e-01 0.113 0.0881 0.478 NK_CD56dim L2
ENSG00000162607 USP1 511094 sc-eQTL 9.73e-01 -0.00291 0.0858 0.478 NK_CD56dim L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 2.33e-01 -0.114 0.0953 0.478 NK_CD56dim L2
ENSG00000079739 PGM1 -646020 sc-eQTL 7.43e-01 -0.0306 0.0932 0.47 NK_HLA L2
ENSG00000088035 ALG6 -420184 sc-eQTL 8.08e-02 0.168 0.096 0.47 NK_HLA L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.60e-01 -0.0227 0.0739 0.47 NK_HLA L2
ENSG00000125703 ATG4C 163259 sc-eQTL 2.89e-01 -0.0911 0.0858 0.47 NK_HLA L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.07e-01 0.0922 0.0901 0.47 NK_HLA L2
ENSG00000162607 USP1 511094 sc-eQTL 5.13e-01 -0.0618 0.0944 0.47 NK_HLA L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 2.46e-01 -0.0998 0.0857 0.47 NK_HLA L2
ENSG00000079739 PGM1 -646020 sc-eQTL 8.24e-01 -0.0169 0.0762 0.478 NK_cytokine L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.80e-01 0.115 0.0858 0.478 NK_cytokine L2
ENSG00000116641 DOCK7 259005 sc-eQTL 4.22e-01 -0.0641 0.0797 0.478 NK_cytokine L2
ENSG00000125703 ATG4C 163259 sc-eQTL 6.05e-01 -0.0423 0.0816 0.478 NK_cytokine L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.84e-01 0.0906 0.0843 0.478 NK_cytokine L2
ENSG00000162607 USP1 511094 sc-eQTL 9.52e-01 -0.00539 0.0889 0.478 NK_cytokine L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 8.96e-01 0.0118 0.0901 0.478 NK_cytokine L2
ENSG00000079739 PGM1 -646020 sc-eQTL 6.77e-01 -0.044 0.105 0.459 PB L2
ENSG00000088035 ALG6 -420184 sc-eQTL 8.04e-02 0.193 0.109 0.459 PB L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.51e-01 -0.0377 0.118 0.459 PB L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.34e-01 0.0352 0.103 0.459 PB L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.07e-01 0.012 0.103 0.459 PB L2
ENSG00000162607 USP1 511094 sc-eQTL 2.69e-01 -0.114 0.102 0.459 PB L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 5.34e-01 0.0705 0.113 0.459 PB L2
ENSG00000079739 PGM1 -646020 sc-eQTL 1.12e-01 0.131 0.0821 0.48 Pro_T L2
ENSG00000088035 ALG6 -420184 sc-eQTL 4.18e-01 0.068 0.0839 0.48 Pro_T L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.74e-01 -0.0242 0.0843 0.48 Pro_T L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.62e-01 -0.0224 0.0738 0.48 Pro_T L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 8.98e-01 0.00947 0.074 0.48 Pro_T L2
ENSG00000162607 USP1 511094 sc-eQTL 3.69e-01 0.0457 0.0508 0.48 Pro_T L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 3.50e-01 -0.0803 0.0858 0.48 Pro_T L2
ENSG00000079739 PGM1 -646020 sc-eQTL 1.73e-01 0.123 0.0898 0.479 Treg L2
ENSG00000088035 ALG6 -420184 sc-eQTL 1.53e-01 -0.138 0.0959 0.479 Treg L2
ENSG00000116641 DOCK7 259005 sc-eQTL 5.37e-01 0.0546 0.0884 0.479 Treg L2
ENSG00000125703 ATG4C 163259 sc-eQTL 7.10e-01 0.0337 0.0904 0.479 Treg L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 7.71e-01 0.0276 0.0946 0.479 Treg L2
ENSG00000162607 USP1 511094 sc-eQTL 6.43e-01 0.0424 0.0915 0.479 Treg L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 4.40e-02 -0.182 0.0897 0.479 Treg L2
ENSG00000079739 PGM1 -646020 sc-eQTL 1.07e-01 0.141 0.0871 0.476 cDC L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.76e-01 0.0968 0.0887 0.476 cDC L2
ENSG00000116641 DOCK7 259005 sc-eQTL 8.56e-02 0.15 0.0866 0.476 cDC L2
ENSG00000125703 ATG4C 163259 sc-eQTL 5.76e-02 0.143 0.0751 0.476 cDC L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.84e-01 0.0836 0.0959 0.476 cDC L2
ENSG00000162607 USP1 511094 sc-eQTL 6.16e-01 -0.0429 0.0855 0.476 cDC L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 8.22e-01 0.0174 0.0772 0.476 cDC L2
ENSG00000079739 PGM1 -646020 sc-eQTL 1.97e-01 0.106 0.082 0.479 cMono_IL1B L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.45e-01 -0.0957 0.0821 0.479 cMono_IL1B L2
ENSG00000116641 DOCK7 259005 sc-eQTL 3.86e-01 0.0753 0.0867 0.479 cMono_IL1B L2
ENSG00000125703 ATG4C 163259 sc-eQTL 3.30e-01 -0.0595 0.061 0.479 cMono_IL1B L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 2.92e-01 -0.0911 0.0863 0.479 cMono_IL1B L2
ENSG00000162607 USP1 511094 sc-eQTL 7.07e-01 -0.0287 0.0763 0.479 cMono_IL1B L2
ENSG00000240563 L1TD1 752542 sc-eQTL 5.11e-01 0.0504 0.0766 0.479 cMono_IL1B L2
ENSG00000079739 PGM1 -646020 sc-eQTL 6.59e-02 0.167 0.0906 0.479 cMono_S100A L2
ENSG00000088035 ALG6 -420184 sc-eQTL 5.48e-01 -0.0557 0.0925 0.479 cMono_S100A L2
ENSG00000116641 DOCK7 259005 sc-eQTL 3.83e-01 -0.0749 0.0857 0.479 cMono_S100A L2
ENSG00000125703 ATG4C 163259 sc-eQTL 6.55e-01 0.0332 0.0743 0.479 cMono_S100A L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.26e-01 -0.00782 0.0838 0.479 cMono_S100A L2
ENSG00000162607 USP1 511094 sc-eQTL 5.84e-01 -0.0472 0.0862 0.479 cMono_S100A L2
ENSG00000240563 L1TD1 752542 sc-eQTL 1.36e-01 -0.107 0.0714 0.479 cMono_S100A L2
ENSG00000079739 PGM1 -646020 sc-eQTL 5.40e-01 0.0669 0.109 0.473 gdT L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.34e-01 -0.138 0.116 0.473 gdT L2
ENSG00000116641 DOCK7 259005 sc-eQTL 1.11e-01 0.181 0.113 0.473 gdT L2
ENSG00000125703 ATG4C 163259 sc-eQTL 8.25e-01 -0.0242 0.109 0.473 gdT L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.97e-01 0.000463 0.116 0.473 gdT L2
ENSG00000162607 USP1 511094 sc-eQTL 8.31e-01 0.0235 0.11 0.473 gdT L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 2.17e-01 -0.14 0.113 0.473 gdT L2
ENSG00000079739 PGM1 -646020 sc-eQTL 4.53e-01 0.0696 0.0924 0.48 intMono L2
ENSG00000088035 ALG6 -420184 sc-eQTL 9.16e-01 0.00914 0.0862 0.48 intMono L2
ENSG00000116641 DOCK7 259005 sc-eQTL 2.04e-01 0.112 0.0877 0.48 intMono L2
ENSG00000125703 ATG4C 163259 sc-eQTL 5.47e-01 0.0507 0.084 0.48 intMono L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.61e-01 -0.13 0.0921 0.48 intMono L2
ENSG00000162607 USP1 511094 sc-eQTL 2.06e-01 -0.119 0.0938 0.48 intMono L2
ENSG00000240563 L1TD1 752542 sc-eQTL 8.58e-01 -0.0124 0.0693 0.48 intMono L2
ENSG00000079739 PGM1 -646020 sc-eQTL 9.03e-01 0.0102 0.0832 0.468 ncMono L2
ENSG00000088035 ALG6 -420184 sc-eQTL 2.26e-01 0.111 0.0911 0.468 ncMono L2
ENSG00000116641 DOCK7 259005 sc-eQTL 7.85e-01 0.0246 0.09 0.468 ncMono L2
ENSG00000125703 ATG4C 163259 sc-eQTL 9.36e-01 -0.00675 0.084 0.468 ncMono L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 6.45e-01 -0.0406 0.0879 0.468 ncMono L2
ENSG00000162607 USP1 511094 sc-eQTL 1.94e-01 -0.117 0.0894 0.468 ncMono L2
ENSG00000240563 L1TD1 752542 sc-eQTL 9.08e-01 -0.00741 0.0637 0.468 ncMono L2
ENSG00000079739 PGM1 -646020 sc-eQTL 4.94e-01 0.0709 0.103 0.477 pDC L2
ENSG00000088035 ALG6 -420184 sc-eQTL 7.21e-01 -0.036 0.101 0.477 pDC L2
ENSG00000116641 DOCK7 259005 sc-eQTL 3.88e-01 0.089 0.103 0.477 pDC L2
ENSG00000125703 ATG4C 163259 sc-eQTL 2.66e-01 0.103 0.0921 0.477 pDC L2
ENSG00000142856 ITGB3BP -646330 sc-eQTL 9.97e-01 0.00044 0.104 0.477 pDC L2
ENSG00000162607 USP1 511094 sc-eQTL 9.70e-01 0.004 0.106 0.477 pDC L2
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.80e-01 0.123 0.0913 0.477 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -646020 sc-eQTL 1.39e-01 0.125 0.0843 0.479 B_Memory LOneK1K
ENSG00000088035 ALG6 -420184 sc-eQTL 1.85e-01 0.124 0.0933 0.479 B_Memory LOneK1K
ENSG00000116641 DOCK7 259005 sc-eQTL 1.38e-01 -0.121 0.0809 0.479 B_Memory LOneK1K
ENSG00000125703 ATG4C 163259 sc-eQTL 9.11e-01 0.00733 0.0658 0.479 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.02e-01 -0.0892 0.0862 0.479 B_Memory LOneK1K
ENSG00000162607 USP1 511094 sc-eQTL 6.42e-01 -0.039 0.0839 0.479 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -575981 sc-eQTL 3.84e-01 0.0785 0.0899 0.479 B_Memory LOneK1K
ENSG00000079739 PGM1 -646020 sc-eQTL 4.35e-01 0.0695 0.0889 0.479 B_Naive LOneK1K
ENSG00000088035 ALG6 -420184 sc-eQTL 6.51e-02 -0.169 0.0909 0.479 B_Naive LOneK1K
ENSG00000116641 DOCK7 259005 sc-eQTL 9.21e-01 0.00853 0.0856 0.479 B_Naive LOneK1K
ENSG00000125703 ATG4C 163259 sc-eQTL 5.90e-01 -0.0352 0.0652 0.479 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -646330 sc-eQTL 3.87e-01 0.0799 0.0921 0.479 B_Naive LOneK1K
ENSG00000162607 USP1 511094 sc-eQTL 1.33e-01 -0.119 0.0789 0.479 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -575981 sc-eQTL 2.87e-01 -0.0988 0.0925 0.479 B_Naive LOneK1K
ENSG00000079739 PGM1 -646020 sc-eQTL 4.72e-02 0.167 0.0838 0.479 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -420184 sc-eQTL 3.40e-01 -0.0781 0.0817 0.479 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 259005 sc-eQTL 4.97e-01 0.0561 0.0824 0.479 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 163259 sc-eQTL 5.67e-01 -0.0327 0.057 0.479 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -646330 sc-eQTL 4.39e-01 -0.0654 0.0842 0.479 CD14_Mono LOneK1K
ENSG00000162607 USP1 511094 sc-eQTL 9.89e-01 -0.000959 0.072 0.479 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 752542 sc-eQTL 8.88e-01 0.011 0.0781 0.479 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -646020 sc-eQTL 5.72e-01 -0.0449 0.0793 0.481 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -420184 sc-eQTL 2.40e-01 0.106 0.0898 0.481 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 259005 sc-eQTL 1.15e-01 0.14 0.0886 0.481 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 163259 sc-eQTL 9.49e-01 0.00485 0.076 0.481 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.01e-01 -0.145 0.0877 0.481 CD16_Mono LOneK1K
ENSG00000162607 USP1 511094 sc-eQTL 1.74e-01 -0.113 0.0826 0.481 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 752542 sc-eQTL 5.85e-01 0.0309 0.0565 0.481 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -646020 sc-eQTL 4.49e-01 -0.0516 0.068 0.478 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -420184 sc-eQTL 5.52e-02 0.156 0.0811 0.478 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 259005 sc-eQTL 8.75e-01 -0.0115 0.0733 0.478 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 163259 sc-eQTL 4.17e-01 -0.0594 0.0731 0.478 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -646330 sc-eQTL 1.12e-01 0.138 0.0862 0.478 NK_CD56dim LOneK1K
ENSG00000162607 USP1 511094 sc-eQTL 5.70e-01 -0.0447 0.0787 0.478 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -575981 sc-eQTL 1.74e-01 -0.13 0.0953 0.478 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000125703 ATG4C 163259 eQTL 0.0191 0.0395 0.0168 0.0 0.0 0.435
ENSG00000132855 ANGPTL3 349904 pQTL 0.0257 0.0639 0.0286 0.00108 0.0 0.444
ENSG00000162607 USP1 511094 eQTL 0.0186 0.0304 0.0129 0.0 0.0 0.435

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079739 \N -646020 3.53e-07 1.7e-07 6.45e-08 2.26e-07 1.08e-07 7.75e-08 2.5e-07 6.57e-08 1.98e-07 1.11e-07 1.96e-07 1.59e-07 2.55e-07 8.15e-08 6.2e-08 1.01e-07 5.42e-08 2.21e-07 7.36e-08 6.03e-08 1.23e-07 1.89e-07 1.75e-07 4.17e-08 2.36e-07 1.71e-07 1.31e-07 1.36e-07 1.34e-07 1.33e-07 1.26e-07 4.4e-08 3.74e-08 1.02e-07 5.24e-08 3.24e-08 4.07e-08 7.61e-08 6.21e-08 6.31e-08 4.53e-08 1.6e-07 3.99e-08 7.35e-09 3.4e-08 6.53e-09 7e-08 2.02e-09 4.98e-08
ENSG00000203965 \N -575981 4.68e-07 2.3e-07 7.45e-08 2.45e-07 1.11e-07 1.19e-07 3.25e-07 7.65e-08 2.53e-07 1.39e-07 2.68e-07 1.96e-07 3.77e-07 8.42e-08 9.2e-08 1.26e-07 8.64e-08 2.83e-07 8e-08 8.69e-08 1.35e-07 2.24e-07 2.04e-07 4.81e-08 3.27e-07 2.01e-07 1.48e-07 1.54e-07 1.6e-07 1.81e-07 1.59e-07 4.71e-08 4.97e-08 1.03e-07 1.01e-07 4.86e-08 5.67e-08 6.78e-08 4.75e-08 8.34e-08 3.64e-08 2.15e-07 3.18e-08 1.43e-08 4.91e-08 1.03e-08 9.1e-08 0.0 4.61e-08