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Genes within 1Mb (chr1:62944948:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -648463 sc-eQTL 2.92e-01 0.106 0.1 0.844 B L1
ENSG00000088035 ALG6 -422627 sc-eQTL 3.06e-01 -0.106 0.104 0.844 B L1
ENSG00000116641 DOCK7 256562 sc-eQTL 1.08e-01 -0.167 0.103 0.844 B L1
ENSG00000125703 ATG4C 160816 sc-eQTL 2.92e-01 0.0761 0.072 0.844 B L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 3.53e-01 0.107 0.115 0.844 B L1
ENSG00000162607 USP1 508651 sc-eQTL 9.38e-01 -0.00777 0.0998 0.844 B L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 6.12e-01 0.0597 0.118 0.844 B L1
ENSG00000079739 PGM1 -648463 sc-eQTL 1.92e-01 0.115 0.0878 0.844 CD4T L1
ENSG00000088035 ALG6 -422627 sc-eQTL 6.37e-02 -0.18 0.0966 0.844 CD4T L1
ENSG00000116641 DOCK7 256562 sc-eQTL 3.92e-01 -0.0844 0.0984 0.844 CD4T L1
ENSG00000125703 ATG4C 160816 sc-eQTL 5.51e-01 -0.0475 0.0795 0.844 CD4T L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.80e-02 0.206 0.112 0.844 CD4T L1
ENSG00000162607 USP1 508651 sc-eQTL 9.32e-01 -0.0066 0.0772 0.844 CD4T L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 1.68e-01 -0.14 0.101 0.844 CD4T L1
ENSG00000079739 PGM1 -648463 sc-eQTL 7.67e-02 0.169 0.0949 0.844 CD8T L1
ENSG00000088035 ALG6 -422627 sc-eQTL 8.48e-01 -0.0202 0.105 0.844 CD8T L1
ENSG00000116641 DOCK7 256562 sc-eQTL 7.90e-01 0.0285 0.107 0.844 CD8T L1
ENSG00000125703 ATG4C 160816 sc-eQTL 9.25e-01 -0.00954 0.101 0.844 CD8T L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.91e-01 -0.0451 0.113 0.844 CD8T L1
ENSG00000162607 USP1 508651 sc-eQTL 3.90e-01 0.0761 0.0882 0.844 CD8T L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 6.98e-01 0.0439 0.113 0.844 CD8T L1
ENSG00000079739 PGM1 -648463 sc-eQTL 3.85e-01 -0.0962 0.11 0.849 DC L1
ENSG00000088035 ALG6 -422627 sc-eQTL 9.40e-01 -0.00867 0.114 0.849 DC L1
ENSG00000116641 DOCK7 256562 sc-eQTL 4.88e-01 0.0812 0.117 0.849 DC L1
ENSG00000125703 ATG4C 160816 sc-eQTL 7.90e-01 0.0244 0.0916 0.849 DC L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 8.31e-01 -0.0274 0.128 0.849 DC L1
ENSG00000162607 USP1 508651 sc-eQTL 1.96e-01 0.144 0.111 0.849 DC L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 4.31e-01 -0.0878 0.111 0.849 DC L1
ENSG00000079739 PGM1 -648463 sc-eQTL 9.02e-01 0.0129 0.104 0.844 Mono L1
ENSG00000088035 ALG6 -422627 sc-eQTL 6.16e-01 -0.0547 0.109 0.844 Mono L1
ENSG00000116641 DOCK7 256562 sc-eQTL 3.53e-01 -0.098 0.105 0.844 Mono L1
ENSG00000125703 ATG4C 160816 sc-eQTL 3.50e-01 0.0666 0.0711 0.844 Mono L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.07e-01 0.142 0.112 0.844 Mono L1
ENSG00000162607 USP1 508651 sc-eQTL 6.79e-01 -0.0383 0.0924 0.844 Mono L1
ENSG00000240563 L1TD1 750099 sc-eQTL 3.31e-01 -0.0839 0.0861 0.844 Mono L1
ENSG00000079739 PGM1 -648463 sc-eQTL 9.44e-01 0.00616 0.0881 0.845 NK L1
ENSG00000088035 ALG6 -422627 sc-eQTL 4.60e-01 0.0764 0.103 0.845 NK L1
ENSG00000116641 DOCK7 256562 sc-eQTL 8.37e-01 -0.0175 0.0851 0.845 NK L1
ENSG00000125703 ATG4C 160816 sc-eQTL 9.32e-01 0.00785 0.0914 0.845 NK L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 4.39e-01 0.088 0.113 0.845 NK L1
ENSG00000162607 USP1 508651 sc-eQTL 6.42e-01 -0.0472 0.101 0.845 NK L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.04e-01 0.127 0.123 0.845 NK L1
ENSG00000079739 PGM1 -648463 sc-eQTL 6.01e-01 0.0529 0.101 0.844 Other_T L1
ENSG00000088035 ALG6 -422627 sc-eQTL 8.89e-02 0.172 0.101 0.844 Other_T L1
ENSG00000116641 DOCK7 256562 sc-eQTL 9.85e-01 0.002 0.104 0.844 Other_T L1
ENSG00000125703 ATG4C 160816 sc-eQTL 9.00e-01 -0.0113 0.0898 0.844 Other_T L1
ENSG00000142856 ITGB3BP -648773 sc-eQTL 3.99e-01 -0.0671 0.0795 0.844 Other_T L1
ENSG00000162607 USP1 508651 sc-eQTL 5.27e-01 0.0436 0.0689 0.844 Other_T L1
ENSG00000203965 EFCAB7 -578424 sc-eQTL 4.00e-01 0.103 0.123 0.844 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -648463 sc-eQTL 7.30e-01 -0.0504 0.146 0.857 B_Activated L2
ENSG00000088035 ALG6 -422627 sc-eQTL 9.03e-01 -0.0171 0.14 0.857 B_Activated L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.85e-02 -0.221 0.129 0.857 B_Activated L2
ENSG00000125703 ATG4C 160816 sc-eQTL 6.12e-01 0.0696 0.137 0.857 B_Activated L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.40e-01 -0.197 0.133 0.857 B_Activated L2
ENSG00000162607 USP1 508651 sc-eQTL 7.09e-01 0.0542 0.145 0.857 B_Activated L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 6.24e-01 -0.0621 0.127 0.857 B_Activated L2
ENSG00000079739 PGM1 -648463 sc-eQTL 7.24e-02 0.219 0.122 0.843 B_Intermediate L2
ENSG00000088035 ALG6 -422627 sc-eQTL 1.71e-01 0.17 0.124 0.843 B_Intermediate L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.04e-01 0.0295 0.119 0.843 B_Intermediate L2
ENSG00000125703 ATG4C 160816 sc-eQTL 3.65e-01 0.0912 0.1 0.843 B_Intermediate L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 8.67e-02 -0.205 0.119 0.843 B_Intermediate L2
ENSG00000162607 USP1 508651 sc-eQTL 3.25e-01 -0.118 0.119 0.843 B_Intermediate L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 4.07e-01 0.0984 0.118 0.843 B_Intermediate L2
ENSG00000079739 PGM1 -648463 sc-eQTL 2.05e-01 0.151 0.119 0.845 B_Memory L2
ENSG00000088035 ALG6 -422627 sc-eQTL 7.06e-02 -0.219 0.12 0.845 B_Memory L2
ENSG00000116641 DOCK7 256562 sc-eQTL 3.90e-01 -0.0978 0.114 0.845 B_Memory L2
ENSG00000125703 ATG4C 160816 sc-eQTL 4.44e-01 0.0828 0.108 0.845 B_Memory L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.22e-01 0.191 0.123 0.845 B_Memory L2
ENSG00000162607 USP1 508651 sc-eQTL 3.67e-01 0.113 0.125 0.845 B_Memory L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 8.10e-01 0.0296 0.123 0.845 B_Memory L2
ENSG00000079739 PGM1 -648463 sc-eQTL 4.85e-01 -0.0838 0.12 0.844 B_Naive1 L2
ENSG00000088035 ALG6 -422627 sc-eQTL 9.18e-01 0.0124 0.12 0.844 B_Naive1 L2
ENSG00000116641 DOCK7 256562 sc-eQTL 3.30e-01 -0.112 0.115 0.844 B_Naive1 L2
ENSG00000125703 ATG4C 160816 sc-eQTL 8.23e-01 -0.0199 0.0888 0.844 B_Naive1 L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 4.79e-02 0.232 0.117 0.844 B_Naive1 L2
ENSG00000162607 USP1 508651 sc-eQTL 6.71e-02 -0.189 0.103 0.844 B_Naive1 L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 5.72e-01 0.0712 0.126 0.844 B_Naive1 L2
ENSG00000079739 PGM1 -648463 sc-eQTL 2.76e-01 0.129 0.118 0.843 B_Naive2 L2
ENSG00000088035 ALG6 -422627 sc-eQTL 2.07e-02 -0.284 0.122 0.843 B_Naive2 L2
ENSG00000116641 DOCK7 256562 sc-eQTL 2.01e-02 -0.274 0.117 0.843 B_Naive2 L2
ENSG00000125703 ATG4C 160816 sc-eQTL 6.08e-01 -0.0586 0.114 0.843 B_Naive2 L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.15e-01 0.153 0.123 0.843 B_Naive2 L2
ENSG00000162607 USP1 508651 sc-eQTL 2.91e-01 0.124 0.118 0.843 B_Naive2 L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.12e-01 -0.124 0.123 0.843 B_Naive2 L2
ENSG00000079739 PGM1 -648463 sc-eQTL 5.79e-01 0.0669 0.12 0.848 CD4_CTL L2
ENSG00000088035 ALG6 -422627 sc-eQTL 4.45e-01 0.0973 0.127 0.848 CD4_CTL L2
ENSG00000116641 DOCK7 256562 sc-eQTL 5.99e-01 -0.0585 0.111 0.848 CD4_CTL L2
ENSG00000125703 ATG4C 160816 sc-eQTL 4.93e-01 -0.0789 0.115 0.848 CD4_CTL L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.29e-01 0.187 0.122 0.848 CD4_CTL L2
ENSG00000162607 USP1 508651 sc-eQTL 3.07e-01 0.12 0.117 0.848 CD4_CTL L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 2.39e-01 -0.138 0.117 0.848 CD4_CTL L2
ENSG00000079739 PGM1 -648463 sc-eQTL 3.41e-01 0.094 0.0985 0.844 CD4_Naive L2
ENSG00000088035 ALG6 -422627 sc-eQTL 3.60e-01 -0.0982 0.107 0.844 CD4_Naive L2
ENSG00000116641 DOCK7 256562 sc-eQTL 2.98e-01 -0.11 0.105 0.844 CD4_Naive L2
ENSG00000125703 ATG4C 160816 sc-eQTL 7.28e-01 0.0324 0.0932 0.844 CD4_Naive L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.07e-01 0.183 0.113 0.844 CD4_Naive L2
ENSG00000162607 USP1 508651 sc-eQTL 9.07e-01 0.0102 0.087 0.844 CD4_Naive L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 1.37e-01 -0.168 0.112 0.844 CD4_Naive L2
ENSG00000079739 PGM1 -648463 sc-eQTL 1.95e-01 0.131 0.101 0.844 CD4_TCM L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.62e-02 -0.202 0.117 0.844 CD4_TCM L2
ENSG00000116641 DOCK7 256562 sc-eQTL 7.94e-01 -0.0273 0.104 0.844 CD4_TCM L2
ENSG00000125703 ATG4C 160816 sc-eQTL 8.24e-01 0.0226 0.102 0.844 CD4_TCM L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 3.02e-01 0.124 0.12 0.844 CD4_TCM L2
ENSG00000162607 USP1 508651 sc-eQTL 8.53e-01 0.0183 0.0983 0.844 CD4_TCM L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 9.40e-01 0.0087 0.116 0.844 CD4_TCM L2
ENSG00000079739 PGM1 -648463 sc-eQTL 9.03e-01 0.0147 0.121 0.844 CD4_TEM L2
ENSG00000088035 ALG6 -422627 sc-eQTL 3.11e-01 -0.123 0.121 0.844 CD4_TEM L2
ENSG00000116641 DOCK7 256562 sc-eQTL 5.11e-01 -0.0779 0.118 0.844 CD4_TEM L2
ENSG00000125703 ATG4C 160816 sc-eQTL 2.53e-01 -0.132 0.115 0.844 CD4_TEM L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.55e-01 0.0532 0.119 0.844 CD4_TEM L2
ENSG00000162607 USP1 508651 sc-eQTL 6.26e-01 -0.055 0.113 0.844 CD4_TEM L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 4.85e-01 -0.0861 0.123 0.844 CD4_TEM L2
ENSG00000079739 PGM1 -648463 sc-eQTL 5.57e-01 0.0637 0.108 0.844 CD8_CTL L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.25e-01 0.0256 0.115 0.844 CD8_CTL L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.48e-01 0.021 0.109 0.844 CD8_CTL L2
ENSG00000125703 ATG4C 160816 sc-eQTL 3.52e-01 0.108 0.116 0.844 CD8_CTL L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.86e-01 0.129 0.121 0.844 CD8_CTL L2
ENSG00000162607 USP1 508651 sc-eQTL 5.89e-01 0.0586 0.108 0.844 CD8_CTL L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 9.80e-01 -0.00307 0.124 0.844 CD8_CTL L2
ENSG00000079739 PGM1 -648463 sc-eQTL 3.53e-02 0.236 0.111 0.844 CD8_Naive L2
ENSG00000088035 ALG6 -422627 sc-eQTL 9.59e-01 0.006 0.116 0.844 CD8_Naive L2
ENSG00000116641 DOCK7 256562 sc-eQTL 5.51e-01 -0.0717 0.12 0.844 CD8_Naive L2
ENSG00000125703 ATG4C 160816 sc-eQTL 5.06e-01 -0.0768 0.115 0.844 CD8_Naive L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 9.43e-01 -0.00832 0.117 0.844 CD8_Naive L2
ENSG00000162607 USP1 508651 sc-eQTL 7.54e-01 0.031 0.0988 0.844 CD8_Naive L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.61e-01 0.101 0.11 0.844 CD8_Naive L2
ENSG00000079739 PGM1 -648463 sc-eQTL 8.32e-01 -0.0267 0.125 0.85 CD8_TCM L2
ENSG00000088035 ALG6 -422627 sc-eQTL 2.34e-01 -0.151 0.126 0.85 CD8_TCM L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.39e-01 -0.0251 0.124 0.85 CD8_TCM L2
ENSG00000125703 ATG4C 160816 sc-eQTL 4.10e-02 -0.257 0.125 0.85 CD8_TCM L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 4.15e-01 -0.1 0.123 0.85 CD8_TCM L2
ENSG00000162607 USP1 508651 sc-eQTL 2.88e-01 0.126 0.118 0.85 CD8_TCM L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.53e-01 0.116 0.125 0.85 CD8_TCM L2
ENSG00000079739 PGM1 -648463 sc-eQTL 8.51e-03 0.317 0.119 0.833 CD8_TEM L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.54e-01 -0.0225 0.122 0.833 CD8_TEM L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.33e-01 0.025 0.118 0.833 CD8_TEM L2
ENSG00000125703 ATG4C 160816 sc-eQTL 6.03e-01 -0.0591 0.113 0.833 CD8_TEM L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.57e-01 0.0546 0.123 0.833 CD8_TEM L2
ENSG00000162607 USP1 508651 sc-eQTL 9.02e-01 0.0145 0.117 0.833 CD8_TEM L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 5.40e-01 0.0731 0.119 0.833 CD8_TEM L2
ENSG00000079739 PGM1 -648463 sc-eQTL 6.35e-01 0.0568 0.12 0.842 MAIT L2
ENSG00000088035 ALG6 -422627 sc-eQTL 3.07e-01 0.121 0.118 0.842 MAIT L2
ENSG00000116641 DOCK7 256562 sc-eQTL 7.12e-01 -0.0419 0.113 0.842 MAIT L2
ENSG00000125703 ATG4C 160816 sc-eQTL 2.75e-01 -0.131 0.119 0.842 MAIT L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.58e-01 -0.169 0.119 0.842 MAIT L2
ENSG00000162607 USP1 508651 sc-eQTL 2.95e-01 0.125 0.119 0.842 MAIT L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.16e-01 0.124 0.123 0.842 MAIT L2
ENSG00000079739 PGM1 -648463 sc-eQTL 5.84e-01 -0.0635 0.116 0.844 NK_CD56bright L2
ENSG00000088035 ALG6 -422627 sc-eQTL 2.82e-01 0.128 0.118 0.844 NK_CD56bright L2
ENSG00000116641 DOCK7 256562 sc-eQTL 8.07e-01 -0.0252 0.103 0.844 NK_CD56bright L2
ENSG00000125703 ATG4C 160816 sc-eQTL 4.79e-01 0.0815 0.115 0.844 NK_CD56bright L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 3.21e-01 -0.119 0.119 0.844 NK_CD56bright L2
ENSG00000162607 USP1 508651 sc-eQTL 8.87e-01 0.0175 0.123 0.844 NK_CD56bright L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 2.11e-01 0.148 0.118 0.844 NK_CD56bright L2
ENSG00000079739 PGM1 -648463 sc-eQTL 1.37e-01 -0.137 0.092 0.845 NK_CD56dim L2
ENSG00000088035 ALG6 -422627 sc-eQTL 3.45e-01 0.111 0.117 0.845 NK_CD56dim L2
ENSG00000116641 DOCK7 256562 sc-eQTL 3.41e-01 0.0973 0.102 0.845 NK_CD56dim L2
ENSG00000125703 ATG4C 160816 sc-eQTL 4.68e-01 -0.0753 0.104 0.845 NK_CD56dim L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 5.29e-01 0.0744 0.118 0.845 NK_CD56dim L2
ENSG00000162607 USP1 508651 sc-eQTL 1.36e-01 -0.17 0.114 0.845 NK_CD56dim L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 8.70e-01 -0.0209 0.127 0.845 NK_CD56dim L2
ENSG00000079739 PGM1 -648463 sc-eQTL 4.26e-01 0.0993 0.124 0.842 NK_HLA L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.87e-01 0.0184 0.129 0.842 NK_HLA L2
ENSG00000116641 DOCK7 256562 sc-eQTL 1.25e-01 -0.151 0.0981 0.842 NK_HLA L2
ENSG00000125703 ATG4C 160816 sc-eQTL 7.30e-01 -0.0397 0.115 0.842 NK_HLA L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.28e-01 0.0584 0.12 0.842 NK_HLA L2
ENSG00000162607 USP1 508651 sc-eQTL 8.41e-01 -0.0254 0.126 0.842 NK_HLA L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 9.22e-01 0.0112 0.115 0.842 NK_HLA L2
ENSG00000079739 PGM1 -648463 sc-eQTL 6.02e-01 0.0526 0.101 0.845 NK_cytokine L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.23e-01 0.0255 0.114 0.845 NK_cytokine L2
ENSG00000116641 DOCK7 256562 sc-eQTL 4.93e-01 -0.0724 0.105 0.845 NK_cytokine L2
ENSG00000125703 ATG4C 160816 sc-eQTL 7.95e-01 0.028 0.108 0.845 NK_cytokine L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 5.45e-01 0.0677 0.112 0.845 NK_cytokine L2
ENSG00000162607 USP1 508651 sc-eQTL 9.61e-01 0.00572 0.118 0.845 NK_cytokine L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.87e-01 0.103 0.119 0.845 NK_cytokine L2
ENSG00000079739 PGM1 -648463 sc-eQTL 6.83e-02 0.264 0.143 0.848 PB L2
ENSG00000088035 ALG6 -422627 sc-eQTL 5.24e-01 0.0974 0.153 0.848 PB L2
ENSG00000116641 DOCK7 256562 sc-eQTL 2.25e-01 0.198 0.162 0.848 PB L2
ENSG00000125703 ATG4C 160816 sc-eQTL 3.12e-01 0.144 0.142 0.848 PB L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.82e-01 -0.19 0.141 0.848 PB L2
ENSG00000162607 USP1 508651 sc-eQTL 9.16e-01 0.0149 0.142 0.848 PB L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 6.73e-01 0.066 0.156 0.848 PB L2
ENSG00000079739 PGM1 -648463 sc-eQTL 9.74e-01 -0.00351 0.109 0.843 Pro_T L2
ENSG00000088035 ALG6 -422627 sc-eQTL 1.80e-01 0.149 0.111 0.843 Pro_T L2
ENSG00000116641 DOCK7 256562 sc-eQTL 9.94e-01 -0.000818 0.112 0.843 Pro_T L2
ENSG00000125703 ATG4C 160816 sc-eQTL 3.83e-01 0.0854 0.0977 0.843 Pro_T L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.95e-01 0.103 0.0979 0.843 Pro_T L2
ENSG00000162607 USP1 508651 sc-eQTL 1.96e-01 -0.0872 0.0672 0.843 Pro_T L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.18e-01 -0.114 0.114 0.843 Pro_T L2
ENSG00000079739 PGM1 -648463 sc-eQTL 8.98e-01 0.015 0.117 0.844 Treg L2
ENSG00000088035 ALG6 -422627 sc-eQTL 9.14e-02 -0.211 0.124 0.844 Treg L2
ENSG00000116641 DOCK7 256562 sc-eQTL 5.20e-01 0.0738 0.115 0.844 Treg L2
ENSG00000125703 ATG4C 160816 sc-eQTL 8.66e-01 0.0198 0.117 0.844 Treg L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.11e-01 0.154 0.122 0.844 Treg L2
ENSG00000162607 USP1 508651 sc-eQTL 2.38e-01 0.14 0.118 0.844 Treg L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 8.30e-01 -0.0253 0.117 0.844 Treg L2
ENSG00000079739 PGM1 -648463 sc-eQTL 2.66e-01 -0.138 0.123 0.851 cDC L2
ENSG00000088035 ALG6 -422627 sc-eQTL 7.82e-01 -0.0348 0.126 0.851 cDC L2
ENSG00000116641 DOCK7 256562 sc-eQTL 6.81e-01 -0.0508 0.123 0.851 cDC L2
ENSG00000125703 ATG4C 160816 sc-eQTL 8.26e-01 -0.0236 0.107 0.851 cDC L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 6.56e-01 -0.0605 0.136 0.851 cDC L2
ENSG00000162607 USP1 508651 sc-eQTL 4.10e-01 0.0996 0.121 0.851 cDC L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 3.83e-01 -0.0951 0.109 0.851 cDC L2
ENSG00000079739 PGM1 -648463 sc-eQTL 4.48e-01 0.0828 0.109 0.844 cMono_IL1B L2
ENSG00000088035 ALG6 -422627 sc-eQTL 7.57e-01 0.0338 0.109 0.844 cMono_IL1B L2
ENSG00000116641 DOCK7 256562 sc-eQTL 2.97e-02 -0.249 0.114 0.844 cMono_IL1B L2
ENSG00000125703 ATG4C 160816 sc-eQTL 7.17e-01 -0.0294 0.0809 0.844 cMono_IL1B L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 8.99e-01 0.0146 0.115 0.844 cMono_IL1B L2
ENSG00000162607 USP1 508651 sc-eQTL 5.59e-01 -0.0591 0.101 0.844 cMono_IL1B L2
ENSG00000240563 L1TD1 750099 sc-eQTL 9.66e-01 0.0043 0.102 0.844 cMono_IL1B L2
ENSG00000079739 PGM1 -648463 sc-eQTL 7.87e-01 -0.0329 0.122 0.844 cMono_S100A L2
ENSG00000088035 ALG6 -422627 sc-eQTL 8.80e-02 -0.21 0.123 0.844 cMono_S100A L2
ENSG00000116641 DOCK7 256562 sc-eQTL 3.36e-01 0.11 0.114 0.844 cMono_S100A L2
ENSG00000125703 ATG4C 160816 sc-eQTL 2.83e-01 0.106 0.0988 0.844 cMono_S100A L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 1.42e-01 0.164 0.111 0.844 cMono_S100A L2
ENSG00000162607 USP1 508651 sc-eQTL 6.18e-01 -0.0574 0.115 0.844 cMono_S100A L2
ENSG00000240563 L1TD1 750099 sc-eQTL 3.57e-02 -0.2 0.0947 0.844 cMono_S100A L2
ENSG00000079739 PGM1 -648463 sc-eQTL 4.09e-01 0.108 0.131 0.839 gdT L2
ENSG00000088035 ALG6 -422627 sc-eQTL 4.82e-01 -0.0983 0.139 0.839 gdT L2
ENSG00000116641 DOCK7 256562 sc-eQTL 5.91e-01 0.0737 0.137 0.839 gdT L2
ENSG00000125703 ATG4C 160816 sc-eQTL 6.64e-01 -0.0569 0.131 0.839 gdT L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 4.00e-01 0.117 0.139 0.839 gdT L2
ENSG00000162607 USP1 508651 sc-eQTL 1.39e-02 0.321 0.129 0.839 gdT L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 1.33e-01 -0.205 0.136 0.839 gdT L2
ENSG00000079739 PGM1 -648463 sc-eQTL 6.13e-01 0.0622 0.123 0.847 intMono L2
ENSG00000088035 ALG6 -422627 sc-eQTL 6.03e-01 -0.0597 0.114 0.847 intMono L2
ENSG00000116641 DOCK7 256562 sc-eQTL 4.68e-01 0.0851 0.117 0.847 intMono L2
ENSG00000125703 ATG4C 160816 sc-eQTL 1.57e-01 0.158 0.111 0.847 intMono L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.66e-01 -0.137 0.123 0.847 intMono L2
ENSG00000162607 USP1 508651 sc-eQTL 5.22e-01 -0.0802 0.125 0.847 intMono L2
ENSG00000240563 L1TD1 750099 sc-eQTL 8.55e-01 -0.0169 0.092 0.847 intMono L2
ENSG00000079739 PGM1 -648463 sc-eQTL 2.09e-01 0.136 0.107 0.842 ncMono L2
ENSG00000088035 ALG6 -422627 sc-eQTL 2.13e-01 0.148 0.118 0.842 ncMono L2
ENSG00000116641 DOCK7 256562 sc-eQTL 6.31e-01 -0.0561 0.117 0.842 ncMono L2
ENSG00000125703 ATG4C 160816 sc-eQTL 6.79e-01 -0.0452 0.109 0.842 ncMono L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.89e-01 0.121 0.114 0.842 ncMono L2
ENSG00000162607 USP1 508651 sc-eQTL 3.20e-02 -0.249 0.115 0.842 ncMono L2
ENSG00000240563 L1TD1 750099 sc-eQTL 6.27e-01 -0.0402 0.0826 0.842 ncMono L2
ENSG00000079739 PGM1 -648463 sc-eQTL 1.69e-01 -0.195 0.141 0.847 pDC L2
ENSG00000088035 ALG6 -422627 sc-eQTL 6.88e-01 -0.0555 0.138 0.847 pDC L2
ENSG00000116641 DOCK7 256562 sc-eQTL 3.61e-01 0.129 0.141 0.847 pDC L2
ENSG00000125703 ATG4C 160816 sc-eQTL 7.27e-01 0.0443 0.127 0.847 pDC L2
ENSG00000142856 ITGB3BP -648773 sc-eQTL 3.30e-01 0.138 0.142 0.847 pDC L2
ENSG00000162607 USP1 508651 sc-eQTL 4.61e-01 0.107 0.145 0.847 pDC L2
ENSG00000203965 EFCAB7 -578424 sc-eQTL 2.51e-01 -0.144 0.125 0.847 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -648463 sc-eQTL 7.14e-02 0.203 0.112 0.844 B_Memory LOneK1K
ENSG00000088035 ALG6 -422627 sc-eQTL 8.56e-01 -0.0226 0.125 0.844 B_Memory LOneK1K
ENSG00000116641 DOCK7 256562 sc-eQTL 6.68e-01 -0.0464 0.108 0.844 B_Memory LOneK1K
ENSG00000125703 ATG4C 160816 sc-eQTL 2.58e-01 0.0989 0.0872 0.844 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -648773 sc-eQTL 8.37e-01 -0.0236 0.115 0.844 B_Memory LOneK1K
ENSG00000162607 USP1 508651 sc-eQTL 4.17e-01 0.0907 0.111 0.844 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -578424 sc-eQTL 7.61e-01 0.0364 0.12 0.844 B_Memory LOneK1K
ENSG00000079739 PGM1 -648463 sc-eQTL 9.80e-01 0.00297 0.117 0.844 B_Naive LOneK1K
ENSG00000088035 ALG6 -422627 sc-eQTL 1.67e-01 -0.166 0.12 0.844 B_Naive LOneK1K
ENSG00000116641 DOCK7 256562 sc-eQTL 1.06e-02 -0.285 0.111 0.844 B_Naive LOneK1K
ENSG00000125703 ATG4C 160816 sc-eQTL 7.77e-01 -0.0243 0.0857 0.844 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -648773 sc-eQTL 5.38e-02 0.233 0.12 0.844 B_Naive LOneK1K
ENSG00000162607 USP1 508651 sc-eQTL 3.69e-01 -0.0935 0.104 0.844 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -578424 sc-eQTL 9.96e-01 0.000577 0.122 0.844 B_Naive LOneK1K
ENSG00000079739 PGM1 -648463 sc-eQTL 9.89e-01 -0.00157 0.111 0.844 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -422627 sc-eQTL 6.09e-01 -0.0551 0.107 0.844 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 256562 sc-eQTL 3.68e-01 -0.0976 0.108 0.844 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 160816 sc-eQTL 4.61e-01 0.0552 0.0748 0.844 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -648773 sc-eQTL 2.65e-01 0.124 0.11 0.844 CD14_Mono LOneK1K
ENSG00000162607 USP1 508651 sc-eQTL 8.21e-01 -0.0215 0.0946 0.844 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 750099 sc-eQTL 6.14e-01 -0.0518 0.103 0.844 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -648463 sc-eQTL 3.79e-01 0.0932 0.106 0.847 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -422627 sc-eQTL 6.60e-01 0.053 0.12 0.847 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 256562 sc-eQTL 9.98e-01 -0.000361 0.119 0.847 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 160816 sc-eQTL 9.26e-01 -0.00946 0.102 0.847 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -648773 sc-eQTL 8.54e-01 -0.0217 0.118 0.847 CD16_Mono LOneK1K
ENSG00000162607 USP1 508651 sc-eQTL 3.81e-01 -0.0971 0.111 0.847 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 750099 sc-eQTL 9.17e-01 -0.00791 0.0756 0.847 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -648463 sc-eQTL 9.91e-01 0.00105 0.0902 0.845 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -422627 sc-eQTL 5.77e-01 0.0604 0.108 0.845 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 256562 sc-eQTL 8.74e-01 -0.0153 0.097 0.845 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 160816 sc-eQTL 8.42e-01 -0.0193 0.0968 0.845 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -648773 sc-eQTL 5.38e-01 0.0707 0.115 0.845 NK_CD56dim LOneK1K
ENSG00000162607 USP1 508651 sc-eQTL 3.73e-01 -0.0929 0.104 0.845 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -578424 sc-eQTL 6.09e-01 0.0649 0.127 0.845 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -648463 eQTL 0.692 -0.00925 0.0233 0.00284 0.0 0.18

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina