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Genes within 1Mb (chr1:62944136:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -649275 sc-eQTL 8.11e-01 0.0187 0.0781 0.359 B L1
ENSG00000088035 ALG6 -423439 sc-eQTL 4.60e-01 -0.0598 0.0808 0.359 B L1
ENSG00000116641 DOCK7 255750 sc-eQTL 1.44e-01 -0.118 0.0805 0.359 B L1
ENSG00000125703 ATG4C 160004 sc-eQTL 9.96e-01 0.000261 0.0562 0.359 B L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 8.18e-01 -0.0206 0.0895 0.359 B L1
ENSG00000162607 USP1 507839 sc-eQTL 1.86e-02 0.182 0.0766 0.359 B L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 9.98e-01 0.000235 0.0916 0.359 B L1
ENSG00000079739 PGM1 -649275 sc-eQTL 4.78e-01 -0.048 0.0676 0.359 CD4T L1
ENSG00000088035 ALG6 -423439 sc-eQTL 6.88e-01 -0.0301 0.0747 0.359 CD4T L1
ENSG00000116641 DOCK7 255750 sc-eQTL 5.05e-01 -0.0505 0.0756 0.359 CD4T L1
ENSG00000125703 ATG4C 160004 sc-eQTL 7.18e-01 -0.0221 0.061 0.359 CD4T L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 3.95e-01 0.0738 0.0865 0.359 CD4T L1
ENSG00000162607 USP1 507839 sc-eQTL 6.49e-01 -0.027 0.0592 0.359 CD4T L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 8.89e-01 0.0109 0.0778 0.359 CD4T L1
ENSG00000079739 PGM1 -649275 sc-eQTL 7.73e-02 0.132 0.0743 0.359 CD8T L1
ENSG00000088035 ALG6 -423439 sc-eQTL 3.18e-01 0.0825 0.0823 0.359 CD8T L1
ENSG00000116641 DOCK7 255750 sc-eQTL 5.12e-02 -0.162 0.0828 0.359 CD8T L1
ENSG00000125703 ATG4C 160004 sc-eQTL 8.46e-01 0.0154 0.0794 0.359 CD8T L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 2.33e-01 -0.106 0.0885 0.359 CD8T L1
ENSG00000162607 USP1 507839 sc-eQTL 2.95e-01 -0.0724 0.069 0.359 CD8T L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 1.64e-01 0.123 0.0881 0.359 CD8T L1
ENSG00000079739 PGM1 -649275 sc-eQTL 4.31e-02 -0.166 0.0816 0.36 DC L1
ENSG00000088035 ALG6 -423439 sc-eQTL 2.15e-01 -0.105 0.0848 0.36 DC L1
ENSG00000116641 DOCK7 255750 sc-eQTL 1.86e-01 -0.115 0.0868 0.36 DC L1
ENSG00000125703 ATG4C 160004 sc-eQTL 3.13e-02 -0.146 0.0674 0.36 DC L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.98e-01 -0.123 0.095 0.36 DC L1
ENSG00000162607 USP1 507839 sc-eQTL 3.66e-01 0.0752 0.0831 0.36 DC L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 1.72e-03 -0.257 0.081 0.36 DC L1
ENSG00000079739 PGM1 -649275 sc-eQTL 3.96e-01 -0.0698 0.0821 0.359 Mono L1
ENSG00000088035 ALG6 -423439 sc-eQTL 8.40e-01 0.0174 0.0858 0.359 Mono L1
ENSG00000116641 DOCK7 255750 sc-eQTL 1.74e-01 -0.113 0.0826 0.359 Mono L1
ENSG00000125703 ATG4C 160004 sc-eQTL 2.85e-01 0.0599 0.0559 0.359 Mono L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.79e-01 0.119 0.0882 0.359 Mono L1
ENSG00000162607 USP1 507839 sc-eQTL 6.24e-01 0.0357 0.0727 0.359 Mono L1
ENSG00000240563 L1TD1 749287 sc-eQTL 3.85e-01 -0.0591 0.0678 0.359 Mono L1
ENSG00000079739 PGM1 -649275 sc-eQTL 4.57e-01 0.0507 0.0681 0.361 NK L1
ENSG00000088035 ALG6 -423439 sc-eQTL 1.65e-01 -0.111 0.0796 0.361 NK L1
ENSG00000116641 DOCK7 255750 sc-eQTL 3.09e-01 -0.067 0.0657 0.361 NK L1
ENSG00000125703 ATG4C 160004 sc-eQTL 2.80e-01 0.0764 0.0705 0.361 NK L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.44e-01 -0.128 0.0875 0.361 NK L1
ENSG00000162607 USP1 507839 sc-eQTL 8.18e-01 -0.0181 0.0785 0.361 NK L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 4.50e-02 0.191 0.0945 0.361 NK L1
ENSG00000079739 PGM1 -649275 sc-eQTL 5.90e-01 0.0416 0.077 0.359 Other_T L1
ENSG00000088035 ALG6 -423439 sc-eQTL 1.56e-01 0.11 0.0771 0.359 Other_T L1
ENSG00000116641 DOCK7 255750 sc-eQTL 2.27e-01 -0.0954 0.0788 0.359 Other_T L1
ENSG00000125703 ATG4C 160004 sc-eQTL 5.36e-01 -0.0424 0.0684 0.359 Other_T L1
ENSG00000142856 ITGB3BP -649585 sc-eQTL 3.29e-02 -0.129 0.06 0.359 Other_T L1
ENSG00000162607 USP1 507839 sc-eQTL 3.70e-01 0.0472 0.0525 0.359 Other_T L1
ENSG00000203965 EFCAB7 -579236 sc-eQTL 6.73e-01 0.0395 0.0936 0.359 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -649275 sc-eQTL 9.16e-01 -0.0113 0.106 0.367 B_Activated L2
ENSG00000088035 ALG6 -423439 sc-eQTL 1.82e-01 -0.136 0.101 0.367 B_Activated L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.58e-01 -0.0421 0.0948 0.367 B_Activated L2
ENSG00000125703 ATG4C 160004 sc-eQTL 6.70e-01 0.0426 0.0997 0.367 B_Activated L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.89e-01 -0.128 0.097 0.367 B_Activated L2
ENSG00000162607 USP1 507839 sc-eQTL 3.33e-01 -0.102 0.105 0.367 B_Activated L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 9.58e-01 -0.00481 0.0923 0.367 B_Activated L2
ENSG00000079739 PGM1 -649275 sc-eQTL 5.34e-01 0.0585 0.0939 0.358 B_Intermediate L2
ENSG00000088035 ALG6 -423439 sc-eQTL 5.66e-01 0.0549 0.0954 0.358 B_Intermediate L2
ENSG00000116641 DOCK7 255750 sc-eQTL 5.33e-01 0.0568 0.0911 0.358 B_Intermediate L2
ENSG00000125703 ATG4C 160004 sc-eQTL 5.03e-01 0.0517 0.0771 0.358 B_Intermediate L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 5.31e-01 -0.0577 0.0918 0.358 B_Intermediate L2
ENSG00000162607 USP1 507839 sc-eQTL 3.99e-02 -0.188 0.0909 0.358 B_Intermediate L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 5.94e-01 0.0485 0.091 0.358 B_Intermediate L2
ENSG00000079739 PGM1 -649275 sc-eQTL 4.18e-01 -0.0739 0.0912 0.358 B_Memory L2
ENSG00000088035 ALG6 -423439 sc-eQTL 6.47e-02 -0.171 0.0921 0.358 B_Memory L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.05e-01 -0.045 0.087 0.358 B_Memory L2
ENSG00000125703 ATG4C 160004 sc-eQTL 4.04e-01 -0.0691 0.0826 0.358 B_Memory L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 8.56e-02 0.162 0.0941 0.358 B_Memory L2
ENSG00000162607 USP1 507839 sc-eQTL 1.41e-02 0.233 0.0942 0.358 B_Memory L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 1.39e-01 -0.139 0.0935 0.358 B_Memory L2
ENSG00000079739 PGM1 -649275 sc-eQTL 5.63e-01 -0.0545 0.094 0.359 B_Naive1 L2
ENSG00000088035 ALG6 -423439 sc-eQTL 5.34e-02 0.182 0.0936 0.359 B_Naive1 L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.33e-01 -0.0432 0.0905 0.359 B_Naive1 L2
ENSG00000125703 ATG4C 160004 sc-eQTL 4.87e-01 -0.0485 0.0696 0.359 B_Naive1 L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 5.76e-01 0.0518 0.0924 0.359 B_Naive1 L2
ENSG00000162607 USP1 507839 sc-eQTL 7.68e-01 0.024 0.0813 0.359 B_Naive1 L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 3.89e-01 0.085 0.0985 0.359 B_Naive1 L2
ENSG00000079739 PGM1 -649275 sc-eQTL 3.77e-01 -0.082 0.0926 0.356 B_Naive2 L2
ENSG00000088035 ALG6 -423439 sc-eQTL 1.74e-01 -0.131 0.0963 0.356 B_Naive2 L2
ENSG00000116641 DOCK7 255750 sc-eQTL 1.08e-01 -0.149 0.0924 0.356 B_Naive2 L2
ENSG00000125703 ATG4C 160004 sc-eQTL 6.88e-01 0.036 0.0895 0.356 B_Naive2 L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.73e-01 0.0697 0.0969 0.356 B_Naive2 L2
ENSG00000162607 USP1 507839 sc-eQTL 2.60e-01 0.104 0.0921 0.356 B_Naive2 L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 5.44e-01 -0.0587 0.0965 0.356 B_Naive2 L2
ENSG00000079739 PGM1 -649275 sc-eQTL 1.34e-01 0.14 0.0927 0.361 CD4_CTL L2
ENSG00000088035 ALG6 -423439 sc-eQTL 5.94e-02 -0.185 0.0976 0.361 CD4_CTL L2
ENSG00000116641 DOCK7 255750 sc-eQTL 2.48e-01 -0.0995 0.0859 0.361 CD4_CTL L2
ENSG00000125703 ATG4C 160004 sc-eQTL 8.87e-01 -0.0127 0.0891 0.361 CD4_CTL L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.35e-01 0.0745 0.0952 0.361 CD4_CTL L2
ENSG00000162607 USP1 507839 sc-eQTL 9.05e-01 -0.0108 0.0907 0.361 CD4_CTL L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 3.99e-01 -0.0764 0.0904 0.361 CD4_CTL L2
ENSG00000079739 PGM1 -649275 sc-eQTL 8.06e-01 -0.0187 0.0762 0.359 CD4_Naive L2
ENSG00000088035 ALG6 -423439 sc-eQTL 8.61e-01 -0.0145 0.0828 0.359 CD4_Naive L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.54e-01 -0.0365 0.0813 0.359 CD4_Naive L2
ENSG00000125703 ATG4C 160004 sc-eQTL 8.37e-01 -0.0148 0.0719 0.359 CD4_Naive L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.96e-01 0.114 0.0876 0.359 CD4_Naive L2
ENSG00000162607 USP1 507839 sc-eQTL 9.31e-01 -0.00582 0.0672 0.359 CD4_Naive L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 8.73e-01 -0.014 0.0873 0.359 CD4_Naive L2
ENSG00000079739 PGM1 -649275 sc-eQTL 9.43e-01 -0.00566 0.0793 0.359 CD4_TCM L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.32e-01 0.00789 0.0921 0.359 CD4_TCM L2
ENSG00000116641 DOCK7 255750 sc-eQTL 5.14e-01 -0.0533 0.0815 0.359 CD4_TCM L2
ENSG00000125703 ATG4C 160004 sc-eQTL 9.71e-01 0.00292 0.0794 0.359 CD4_TCM L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 7.57e-01 0.029 0.0936 0.359 CD4_TCM L2
ENSG00000162607 USP1 507839 sc-eQTL 7.84e-01 -0.0211 0.0767 0.359 CD4_TCM L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 3.77e-01 0.0801 0.0904 0.359 CD4_TCM L2
ENSG00000079739 PGM1 -649275 sc-eQTL 9.82e-02 -0.152 0.0918 0.359 CD4_TEM L2
ENSG00000088035 ALG6 -423439 sc-eQTL 8.25e-01 0.0206 0.0928 0.359 CD4_TEM L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.16e-01 0.0454 0.0904 0.359 CD4_TEM L2
ENSG00000125703 ATG4C 160004 sc-eQTL 7.96e-01 -0.0228 0.0879 0.359 CD4_TEM L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 9.50e-01 -0.00569 0.0907 0.359 CD4_TEM L2
ENSG00000162607 USP1 507839 sc-eQTL 7.48e-02 -0.153 0.0853 0.359 CD4_TEM L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 1.62e-01 -0.131 0.0936 0.359 CD4_TEM L2
ENSG00000079739 PGM1 -649275 sc-eQTL 4.29e-02 0.169 0.0831 0.359 CD8_CTL L2
ENSG00000088035 ALG6 -423439 sc-eQTL 3.98e-01 -0.0754 0.0891 0.359 CD8_CTL L2
ENSG00000116641 DOCK7 255750 sc-eQTL 2.71e-01 -0.0933 0.0845 0.359 CD8_CTL L2
ENSG00000125703 ATG4C 160004 sc-eQTL 9.07e-01 -0.0106 0.0902 0.359 CD8_CTL L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 9.02e-01 -0.0115 0.0937 0.359 CD8_CTL L2
ENSG00000162607 USP1 507839 sc-eQTL 3.32e-01 -0.0814 0.0838 0.359 CD8_CTL L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 8.07e-01 0.0235 0.096 0.359 CD8_CTL L2
ENSG00000079739 PGM1 -649275 sc-eQTL 1.93e-01 0.113 0.0866 0.359 CD8_Naive L2
ENSG00000088035 ALG6 -423439 sc-eQTL 4.94e-02 0.176 0.0892 0.359 CD8_Naive L2
ENSG00000116641 DOCK7 255750 sc-eQTL 3.31e-02 -0.198 0.0921 0.359 CD8_Naive L2
ENSG00000125703 ATG4C 160004 sc-eQTL 7.28e-01 0.0311 0.0893 0.359 CD8_Naive L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.86e-01 -0.119 0.0901 0.359 CD8_Naive L2
ENSG00000162607 USP1 507839 sc-eQTL 4.03e-01 -0.0641 0.0764 0.359 CD8_Naive L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 2.84e-01 0.0914 0.0851 0.359 CD8_Naive L2
ENSG00000079739 PGM1 -649275 sc-eQTL 8.35e-01 0.02 0.0958 0.354 CD8_TCM L2
ENSG00000088035 ALG6 -423439 sc-eQTL 2.65e-01 -0.108 0.0967 0.354 CD8_TCM L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.42e-01 0.044 0.0946 0.354 CD8_TCM L2
ENSG00000125703 ATG4C 160004 sc-eQTL 1.63e-01 0.135 0.0963 0.354 CD8_TCM L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 7.34e-01 0.032 0.094 0.354 CD8_TCM L2
ENSG00000162607 USP1 507839 sc-eQTL 1.19e-01 0.141 0.0899 0.354 CD8_TCM L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 2.17e-01 0.118 0.0955 0.354 CD8_TCM L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.86e-01 0.101 0.0942 0.352 CD8_TEM L2
ENSG00000088035 ALG6 -423439 sc-eQTL 7.00e-01 0.0365 0.0948 0.352 CD8_TEM L2
ENSG00000116641 DOCK7 255750 sc-eQTL 4.73e-01 -0.066 0.0918 0.352 CD8_TEM L2
ENSG00000125703 ATG4C 160004 sc-eQTL 3.99e-01 -0.0746 0.0882 0.352 CD8_TEM L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 5.51e-02 0.183 0.0947 0.352 CD8_TEM L2
ENSG00000162607 USP1 507839 sc-eQTL 6.73e-02 -0.166 0.0905 0.352 CD8_TEM L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 8.78e-02 0.158 0.092 0.352 CD8_TEM L2
ENSG00000079739 PGM1 -649275 sc-eQTL 1.07e-01 0.144 0.0891 0.364 MAIT L2
ENSG00000088035 ALG6 -423439 sc-eQTL 2.66e-01 -0.0986 0.0885 0.364 MAIT L2
ENSG00000116641 DOCK7 255750 sc-eQTL 3.70e-01 -0.0762 0.0849 0.364 MAIT L2
ENSG00000125703 ATG4C 160004 sc-eQTL 2.67e-01 -0.0994 0.0894 0.364 MAIT L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.86e-02 -0.21 0.0886 0.364 MAIT L2
ENSG00000162607 USP1 507839 sc-eQTL 5.84e-01 0.0488 0.089 0.364 MAIT L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 9.97e-01 0.000364 0.0925 0.364 MAIT L2
ENSG00000079739 PGM1 -649275 sc-eQTL 4.03e-01 -0.0752 0.0897 0.36 NK_CD56bright L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.83e-01 0.00193 0.0921 0.36 NK_CD56bright L2
ENSG00000116641 DOCK7 255750 sc-eQTL 2.80e-01 -0.0862 0.0795 0.36 NK_CD56bright L2
ENSG00000125703 ATG4C 160004 sc-eQTL 9.44e-01 -0.00625 0.0891 0.36 NK_CD56bright L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.38e-01 0.0721 0.0927 0.36 NK_CD56bright L2
ENSG00000162607 USP1 507839 sc-eQTL 9.81e-01 0.00223 0.0957 0.36 NK_CD56bright L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 7.33e-01 0.0313 0.0915 0.36 NK_CD56bright L2
ENSG00000079739 PGM1 -649275 sc-eQTL 8.62e-01 -0.0123 0.0707 0.36 NK_CD56dim L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.55e-01 -0.00508 0.0897 0.36 NK_CD56dim L2
ENSG00000116641 DOCK7 255750 sc-eQTL 8.40e-01 -0.0158 0.0781 0.36 NK_CD56dim L2
ENSG00000125703 ATG4C 160004 sc-eQTL 7.08e-01 0.0298 0.0793 0.36 NK_CD56dim L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.54e-01 -0.128 0.0898 0.36 NK_CD56dim L2
ENSG00000162607 USP1 507839 sc-eQTL 1.91e-01 -0.114 0.0872 0.36 NK_CD56dim L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 4.32e-01 0.0767 0.0974 0.36 NK_CD56dim L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.95e-01 0.1 0.0957 0.368 NK_HLA L2
ENSG00000088035 ALG6 -423439 sc-eQTL 3.30e-01 -0.0969 0.0992 0.368 NK_HLA L2
ENSG00000116641 DOCK7 255750 sc-eQTL 1.12e-01 -0.121 0.0756 0.368 NK_HLA L2
ENSG00000125703 ATG4C 160004 sc-eQTL 2.03e-01 0.112 0.0881 0.368 NK_HLA L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 3.93e-01 -0.0793 0.0927 0.368 NK_HLA L2
ENSG00000162607 USP1 507839 sc-eQTL 4.07e-01 0.0807 0.097 0.368 NK_HLA L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 2.74e-01 0.0967 0.0882 0.368 NK_HLA L2
ENSG00000079739 PGM1 -649275 sc-eQTL 3.86e-01 0.0673 0.0775 0.36 NK_cytokine L2
ENSG00000088035 ALG6 -423439 sc-eQTL 3.03e-01 -0.0903 0.0875 0.36 NK_cytokine L2
ENSG00000116641 DOCK7 255750 sc-eQTL 9.58e-01 0.0043 0.0812 0.36 NK_cytokine L2
ENSG00000125703 ATG4C 160004 sc-eQTL 2.99e-01 0.0863 0.0829 0.36 NK_cytokine L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.45e-01 -0.0657 0.0859 0.36 NK_cytokine L2
ENSG00000162607 USP1 507839 sc-eQTL 9.27e-01 -0.00825 0.0905 0.36 NK_cytokine L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 4.02e-01 0.0768 0.0915 0.36 NK_cytokine L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.25e-01 0.131 0.107 0.385 PB L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.64e-02 -0.188 0.112 0.385 PB L2
ENSG00000116641 DOCK7 255750 sc-eQTL 2.19e-01 0.149 0.121 0.385 PB L2
ENSG00000125703 ATG4C 160004 sc-eQTL 8.78e-01 0.0163 0.106 0.385 PB L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 3.50e-01 -0.0988 0.105 0.385 PB L2
ENSG00000162607 USP1 507839 sc-eQTL 2.67e-01 0.117 0.105 0.385 PB L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 8.11e-01 -0.0278 0.116 0.385 PB L2
ENSG00000079739 PGM1 -649275 sc-eQTL 3.00e-01 -0.0887 0.0853 0.357 Pro_T L2
ENSG00000088035 ALG6 -423439 sc-eQTL 8.81e-01 0.0131 0.0871 0.357 Pro_T L2
ENSG00000116641 DOCK7 255750 sc-eQTL 6.01e-01 0.0457 0.0873 0.357 Pro_T L2
ENSG00000125703 ATG4C 160004 sc-eQTL 2.42e-01 0.0895 0.0762 0.357 Pro_T L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.96e-01 0.0522 0.0766 0.357 Pro_T L2
ENSG00000162607 USP1 507839 sc-eQTL 4.23e-02 -0.107 0.0522 0.357 Pro_T L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 7.37e-01 0.03 0.0891 0.357 Pro_T L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.72e-01 -0.0993 0.0902 0.359 Treg L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.80e-01 0.00246 0.0967 0.359 Treg L2
ENSG00000116641 DOCK7 255750 sc-eQTL 7.26e-01 -0.0311 0.0888 0.359 Treg L2
ENSG00000125703 ATG4C 160004 sc-eQTL 6.63e-01 -0.0396 0.0907 0.359 Treg L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 3.69e-01 0.0853 0.0947 0.359 Treg L2
ENSG00000162607 USP1 507839 sc-eQTL 6.91e-01 0.0366 0.0918 0.359 Treg L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 7.61e-02 0.161 0.0902 0.359 Treg L2
ENSG00000079739 PGM1 -649275 sc-eQTL 9.19e-03 -0.229 0.0869 0.366 cDC L2
ENSG00000088035 ALG6 -423439 sc-eQTL 4.17e-01 -0.0729 0.0896 0.366 cDC L2
ENSG00000116641 DOCK7 255750 sc-eQTL 8.10e-02 -0.153 0.0873 0.366 cDC L2
ENSG00000125703 ATG4C 160004 sc-eQTL 8.52e-02 -0.131 0.0759 0.366 cDC L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 2.86e-01 -0.104 0.0966 0.366 cDC L2
ENSG00000162607 USP1 507839 sc-eQTL 1.74e-01 0.117 0.0859 0.366 cDC L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 4.38e-01 -0.0605 0.0778 0.366 cDC L2
ENSG00000079739 PGM1 -649275 sc-eQTL 7.70e-01 -0.0247 0.0844 0.359 cMono_IL1B L2
ENSG00000088035 ALG6 -423439 sc-eQTL 2.02e-01 0.108 0.0842 0.359 cMono_IL1B L2
ENSG00000116641 DOCK7 255750 sc-eQTL 1.11e-02 -0.225 0.0877 0.359 cMono_IL1B L2
ENSG00000125703 ATG4C 160004 sc-eQTL 2.64e-01 0.07 0.0625 0.359 cMono_IL1B L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 6.36e-01 0.042 0.0887 0.359 cMono_IL1B L2
ENSG00000162607 USP1 507839 sc-eQTL 5.38e-01 0.0483 0.0782 0.359 cMono_IL1B L2
ENSG00000240563 L1TD1 749287 sc-eQTL 4.19e-01 -0.0636 0.0785 0.359 cMono_IL1B L2
ENSG00000079739 PGM1 -649275 sc-eQTL 3.70e-02 -0.194 0.0924 0.359 cMono_S100A L2
ENSG00000088035 ALG6 -423439 sc-eQTL 9.10e-01 -0.0107 0.0946 0.359 cMono_S100A L2
ENSG00000116641 DOCK7 255750 sc-eQTL 9.25e-02 0.147 0.0871 0.359 cMono_S100A L2
ENSG00000125703 ATG4C 160004 sc-eQTL 6.62e-01 -0.0332 0.0759 0.359 cMono_S100A L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.68e-01 0.118 0.0853 0.359 cMono_S100A L2
ENSG00000162607 USP1 507839 sc-eQTL 8.46e-01 0.0171 0.0881 0.359 cMono_S100A L2
ENSG00000240563 L1TD1 749287 sc-eQTL 9.24e-01 0.00699 0.0733 0.359 cMono_S100A L2
ENSG00000079739 PGM1 -649275 sc-eQTL 8.51e-01 0.0197 0.105 0.364 gdT L2
ENSG00000088035 ALG6 -423439 sc-eQTL 4.39e-01 0.0865 0.111 0.364 gdT L2
ENSG00000116641 DOCK7 255750 sc-eQTL 3.09e-01 -0.111 0.109 0.364 gdT L2
ENSG00000125703 ATG4C 160004 sc-eQTL 7.98e-01 0.0269 0.105 0.364 gdT L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 8.86e-01 0.016 0.111 0.364 gdT L2
ENSG00000162607 USP1 507839 sc-eQTL 2.41e-01 0.123 0.105 0.364 gdT L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 5.62e-01 -0.0636 0.109 0.364 gdT L2
ENSG00000079739 PGM1 -649275 sc-eQTL 5.71e-01 -0.0533 0.094 0.362 intMono L2
ENSG00000088035 ALG6 -423439 sc-eQTL 5.47e-01 -0.0529 0.0876 0.362 intMono L2
ENSG00000116641 DOCK7 255750 sc-eQTL 2.43e-01 -0.104 0.0892 0.362 intMono L2
ENSG00000125703 ATG4C 160004 sc-eQTL 9.51e-01 -0.00522 0.0854 0.362 intMono L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 7.12e-01 0.0348 0.0941 0.362 intMono L2
ENSG00000162607 USP1 507839 sc-eQTL 4.99e-01 0.0647 0.0956 0.362 intMono L2
ENSG00000240563 L1TD1 749287 sc-eQTL 8.87e-01 0.01 0.0704 0.362 intMono L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.61e-01 0.0953 0.0845 0.367 ncMono L2
ENSG00000088035 ALG6 -423439 sc-eQTL 5.49e-01 -0.0558 0.0931 0.367 ncMono L2
ENSG00000116641 DOCK7 255750 sc-eQTL 3.58e-01 -0.0844 0.0915 0.367 ncMono L2
ENSG00000125703 ATG4C 160004 sc-eQTL 5.92e-01 -0.0459 0.0856 0.367 ncMono L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 2.13e-01 0.112 0.0892 0.367 ncMono L2
ENSG00000162607 USP1 507839 sc-eQTL 8.16e-01 -0.0213 0.0915 0.367 ncMono L2
ENSG00000240563 L1TD1 749287 sc-eQTL 7.78e-01 -0.0183 0.0649 0.367 ncMono L2
ENSG00000079739 PGM1 -649275 sc-eQTL 2.08e-01 -0.126 0.1 0.359 pDC L2
ENSG00000088035 ALG6 -423439 sc-eQTL 8.91e-01 -0.0135 0.0979 0.359 pDC L2
ENSG00000116641 DOCK7 255750 sc-eQTL 7.37e-01 -0.0336 0.0999 0.359 pDC L2
ENSG00000125703 ATG4C 160004 sc-eQTL 6.85e-01 -0.0365 0.0896 0.359 pDC L2
ENSG00000142856 ITGB3BP -649585 sc-eQTL 4.30e-01 0.0795 0.1 0.359 pDC L2
ENSG00000162607 USP1 507839 sc-eQTL 8.99e-01 -0.013 0.103 0.359 pDC L2
ENSG00000203965 EFCAB7 -579236 sc-eQTL 5.48e-02 -0.17 0.088 0.359 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -649275 sc-eQTL 7.13e-01 0.0318 0.0863 0.359 B_Memory LOneK1K
ENSG00000088035 ALG6 -423439 sc-eQTL 1.53e-01 -0.136 0.095 0.359 B_Memory LOneK1K
ENSG00000116641 DOCK7 255750 sc-eQTL 5.12e-01 0.0544 0.0828 0.359 B_Memory LOneK1K
ENSG00000125703 ATG4C 160004 sc-eQTL 9.22e-01 0.00655 0.067 0.359 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -649585 sc-eQTL 5.69e-01 0.0501 0.088 0.359 B_Memory LOneK1K
ENSG00000162607 USP1 507839 sc-eQTL 3.30e-01 0.0832 0.0853 0.359 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -579236 sc-eQTL 4.48e-01 -0.0697 0.0916 0.359 B_Memory LOneK1K
ENSG00000079739 PGM1 -649275 sc-eQTL 4.35e-01 -0.0714 0.0912 0.359 B_Naive LOneK1K
ENSG00000088035 ALG6 -423439 sc-eQTL 5.48e-01 0.0565 0.0939 0.359 B_Naive LOneK1K
ENSG00000116641 DOCK7 255750 sc-eQTL 6.30e-02 -0.163 0.0871 0.359 B_Naive LOneK1K
ENSG00000125703 ATG4C 160004 sc-eQTL 9.53e-01 -0.00398 0.067 0.359 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -649585 sc-eQTL 7.93e-01 0.0249 0.0947 0.359 B_Naive LOneK1K
ENSG00000162607 USP1 507839 sc-eQTL 1.82e-01 0.109 0.081 0.359 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -579236 sc-eQTL 5.18e-01 0.0616 0.0951 0.359 B_Naive LOneK1K
ENSG00000079739 PGM1 -649275 sc-eQTL 1.13e-01 -0.138 0.0865 0.359 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -423439 sc-eQTL 4.57e-01 0.0627 0.0842 0.359 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 255750 sc-eQTL 1.96e-01 -0.11 0.0846 0.359 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 160004 sc-eQTL 2.97e-01 0.0612 0.0585 0.359 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -649585 sc-eQTL 2.27e-01 0.105 0.0865 0.359 CD14_Mono LOneK1K
ENSG00000162607 USP1 507839 sc-eQTL 7.89e-01 0.0199 0.0742 0.359 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 749287 sc-eQTL 5.21e-01 -0.0517 0.0803 0.359 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -649275 sc-eQTL 2.03e-01 0.103 0.081 0.36 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -423439 sc-eQTL 2.74e-01 -0.101 0.0921 0.36 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 255750 sc-eQTL 2.91e-02 -0.198 0.0903 0.36 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 160004 sc-eQTL 6.88e-01 -0.0313 0.0779 0.36 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.75e-01 0.123 0.0901 0.36 CD16_Mono LOneK1K
ENSG00000162607 USP1 507839 sc-eQTL 5.18e-01 0.055 0.0849 0.36 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 749287 sc-eQTL 6.67e-01 -0.025 0.058 0.36 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -649275 sc-eQTL 5.30e-01 0.0438 0.0695 0.36 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -423439 sc-eQTL 2.69e-01 -0.0923 0.0833 0.36 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 255750 sc-eQTL 9.53e-01 0.00444 0.0749 0.36 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 160004 sc-eQTL 1.77e-01 0.101 0.0744 0.36 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -649585 sc-eQTL 1.15e-01 -0.139 0.088 0.36 NK_CD56dim LOneK1K
ENSG00000162607 USP1 507839 sc-eQTL 7.78e-01 -0.0226 0.0804 0.36 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -579236 sc-eQTL 1.08e-01 0.157 0.0972 0.36 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 255768 eQTL 0.00715 -0.0604 0.0224 0.0 0.0 0.385
ENSG00000162607 USP1 507839 eQTL 0.00897 -0.0341 0.013 0.0 0.0 0.385
ENSG00000240563 L1TD1 749287 eQTL 0.0305 0.0846 0.039 0.0 0.0 0.385

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000116641 DOCK7 255768 1.29e-06 1.07e-06 2.88e-07 1.15e-06 3.95e-07 5.87e-07 1.5e-06 4.39e-07 1.66e-06 5.86e-07 1.95e-06 8.56e-07 2.5e-06 2.92e-07 4.95e-07 9.72e-07 9.18e-07 1.02e-06 7.04e-07 4.83e-07 7.54e-07 1.92e-06 1.11e-06 5.81e-07 2.25e-06 7.58e-07 9.89e-07 9.43e-07 1.62e-06 1.19e-06 7.64e-07 2.7e-07 2.77e-07 5.62e-07 5.38e-07 5.26e-07 6.8e-07 2.94e-07 4.53e-07 2.8e-07 3.68e-07 1.62e-06 1.41e-07 1.14e-07 2.99e-07 1.99e-07 2.66e-07 9.32e-08 2.44e-07