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Genes within 1Mb (chr1:62940780:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -652631 sc-eQTL 2.08e-01 0.126 0.0999 0.838 B L1
ENSG00000088035 ALG6 -426795 sc-eQTL 2.24e-01 -0.126 0.104 0.838 B L1
ENSG00000116641 DOCK7 252394 sc-eQTL 5.98e-02 -0.195 0.103 0.838 B L1
ENSG00000125703 ATG4C 156648 sc-eQTL 3.62e-01 0.0658 0.0721 0.838 B L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 3.98e-01 0.0971 0.115 0.838 B L1
ENSG00000162607 USP1 504483 sc-eQTL 8.30e-01 0.0214 0.0997 0.838 B L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.38e-01 0.0725 0.118 0.838 B L1
ENSG00000079739 PGM1 -652631 sc-eQTL 2.87e-01 0.0938 0.0878 0.838 CD4T L1
ENSG00000088035 ALG6 -426795 sc-eQTL 9.12e-02 -0.164 0.0966 0.838 CD4T L1
ENSG00000116641 DOCK7 252394 sc-eQTL 3.73e-01 -0.0878 0.0982 0.838 CD4T L1
ENSG00000125703 ATG4C 156648 sc-eQTL 9.25e-01 -0.00751 0.0795 0.838 CD4T L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 1.19e-01 0.176 0.112 0.838 CD4T L1
ENSG00000162607 USP1 504483 sc-eQTL 5.69e-01 -0.044 0.077 0.838 CD4T L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 1.13e-01 -0.16 0.101 0.838 CD4T L1
ENSG00000079739 PGM1 -652631 sc-eQTL 2.69e-01 0.105 0.0951 0.838 CD8T L1
ENSG00000088035 ALG6 -426795 sc-eQTL 8.89e-01 -0.0147 0.105 0.838 CD8T L1
ENSG00000116641 DOCK7 252394 sc-eQTL 5.20e-01 0.0686 0.106 0.838 CD8T L1
ENSG00000125703 ATG4C 156648 sc-eQTL 8.32e-01 0.0215 0.101 0.838 CD8T L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 5.31e-01 -0.0709 0.113 0.838 CD8T L1
ENSG00000162607 USP1 504483 sc-eQTL 3.09e-01 0.0896 0.0879 0.838 CD8T L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 9.07e-01 -0.0131 0.113 0.838 CD8T L1
ENSG00000079739 PGM1 -652631 sc-eQTL 7.03e-01 -0.0412 0.108 0.84 DC L1
ENSG00000088035 ALG6 -426795 sc-eQTL 7.45e-01 -0.0363 0.111 0.84 DC L1
ENSG00000116641 DOCK7 252394 sc-eQTL 3.91e-01 0.0981 0.114 0.84 DC L1
ENSG00000125703 ATG4C 156648 sc-eQTL 7.23e-01 0.0317 0.0894 0.84 DC L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 6.98e-01 -0.0485 0.125 0.84 DC L1
ENSG00000162607 USP1 504483 sc-eQTL 5.14e-01 0.0713 0.109 0.84 DC L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.03e-01 -0.0729 0.109 0.84 DC L1
ENSG00000079739 PGM1 -652631 sc-eQTL 6.04e-01 0.054 0.104 0.838 Mono L1
ENSG00000088035 ALG6 -426795 sc-eQTL 4.20e-01 -0.0875 0.108 0.838 Mono L1
ENSG00000116641 DOCK7 252394 sc-eQTL 4.28e-01 -0.0832 0.105 0.838 Mono L1
ENSG00000125703 ATG4C 156648 sc-eQTL 2.87e-01 0.0755 0.0707 0.838 Mono L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 5.48e-01 0.0674 0.112 0.838 Mono L1
ENSG00000162607 USP1 504483 sc-eQTL 7.07e-01 0.0346 0.092 0.838 Mono L1
ENSG00000240563 L1TD1 745931 sc-eQTL 4.10e-01 -0.0708 0.0858 0.838 Mono L1
ENSG00000079739 PGM1 -652631 sc-eQTL 6.13e-01 0.0446 0.0881 0.839 NK L1
ENSG00000088035 ALG6 -426795 sc-eQTL 3.50e-01 0.0966 0.103 0.839 NK L1
ENSG00000116641 DOCK7 252394 sc-eQTL 9.04e-01 0.0103 0.0851 0.839 NK L1
ENSG00000125703 ATG4C 156648 sc-eQTL 8.96e-01 0.0119 0.0914 0.839 NK L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.14e-01 0.0267 0.114 0.839 NK L1
ENSG00000162607 USP1 504483 sc-eQTL 3.76e-01 -0.0898 0.101 0.839 NK L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 3.65e-01 0.112 0.123 0.839 NK L1
ENSG00000079739 PGM1 -652631 sc-eQTL 8.17e-01 0.0234 0.101 0.838 Other_T L1
ENSG00000088035 ALG6 -426795 sc-eQTL 1.01e-01 0.166 0.101 0.838 Other_T L1
ENSG00000116641 DOCK7 252394 sc-eQTL 8.92e-01 0.0141 0.104 0.838 Other_T L1
ENSG00000125703 ATG4C 156648 sc-eQTL 4.49e-01 -0.0678 0.0895 0.838 Other_T L1
ENSG00000142856 ITGB3BP -652941 sc-eQTL 6.87e-01 -0.0321 0.0794 0.838 Other_T L1
ENSG00000162607 USP1 504483 sc-eQTL 7.01e-01 0.0265 0.0689 0.838 Other_T L1
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.08e-01 0.154 0.122 0.838 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -652631 sc-eQTL 9.41e-01 0.011 0.148 0.852 B_Activated L2
ENSG00000088035 ALG6 -426795 sc-eQTL 5.37e-01 0.0874 0.141 0.852 B_Activated L2
ENSG00000116641 DOCK7 252394 sc-eQTL 1.84e-01 -0.175 0.131 0.852 B_Activated L2
ENSG00000125703 ATG4C 156648 sc-eQTL 1.96e-01 0.179 0.138 0.852 B_Activated L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.28e-01 -0.163 0.135 0.852 B_Activated L2
ENSG00000162607 USP1 504483 sc-eQTL 7.53e-01 0.0461 0.147 0.852 B_Activated L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 3.05e-01 -0.131 0.128 0.852 B_Activated L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.01e-02 0.284 0.121 0.837 B_Intermediate L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.10e-01 0.199 0.124 0.837 B_Intermediate L2
ENSG00000116641 DOCK7 252394 sc-eQTL 8.78e-01 -0.0184 0.119 0.837 B_Intermediate L2
ENSG00000125703 ATG4C 156648 sc-eQTL 5.20e-01 0.065 0.101 0.837 B_Intermediate L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 6.94e-02 -0.218 0.119 0.837 B_Intermediate L2
ENSG00000162607 USP1 504483 sc-eQTL 5.80e-01 -0.0665 0.12 0.837 B_Intermediate L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.06e-01 0.151 0.119 0.837 B_Intermediate L2
ENSG00000079739 PGM1 -652631 sc-eQTL 3.65e-01 0.108 0.119 0.838 B_Memory L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.23e-01 -0.187 0.121 0.838 B_Memory L2
ENSG00000116641 DOCK7 252394 sc-eQTL 1.00e-01 -0.187 0.113 0.838 B_Memory L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.51e-01 0.0343 0.108 0.838 B_Memory L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.31e-01 0.148 0.123 0.838 B_Memory L2
ENSG00000162607 USP1 504483 sc-eQTL 5.20e-01 0.0803 0.125 0.838 B_Memory L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 8.36e-01 0.0255 0.123 0.838 B_Memory L2
ENSG00000079739 PGM1 -652631 sc-eQTL 3.67e-01 -0.108 0.119 0.838 B_Naive1 L2
ENSG00000088035 ALG6 -426795 sc-eQTL 7.00e-01 -0.0462 0.12 0.838 B_Naive1 L2
ENSG00000116641 DOCK7 252394 sc-eQTL 6.46e-01 -0.0526 0.114 0.838 B_Naive1 L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.51e-01 -0.0281 0.0882 0.838 B_Naive1 L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 1.74e-02 0.277 0.115 0.838 B_Naive1 L2
ENSG00000162607 USP1 504483 sc-eQTL 1.91e-01 -0.134 0.102 0.838 B_Naive1 L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 4.58e-01 0.0927 0.125 0.838 B_Naive1 L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.99e-01 0.122 0.117 0.837 B_Naive2 L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.26e-02 -0.304 0.121 0.837 B_Naive2 L2
ENSG00000116641 DOCK7 252394 sc-eQTL 1.12e-02 -0.297 0.116 0.837 B_Naive2 L2
ENSG00000125703 ATG4C 156648 sc-eQTL 6.92e-01 -0.045 0.114 0.837 B_Naive2 L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.12e-01 0.101 0.123 0.837 B_Naive2 L2
ENSG00000162607 USP1 504483 sc-eQTL 4.48e-01 0.089 0.117 0.837 B_Naive2 L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.24e-01 -0.149 0.122 0.837 B_Naive2 L2
ENSG00000079739 PGM1 -652631 sc-eQTL 6.97e-01 0.0469 0.12 0.841 CD4_CTL L2
ENSG00000088035 ALG6 -426795 sc-eQTL 6.01e-01 0.0665 0.127 0.841 CD4_CTL L2
ENSG00000116641 DOCK7 252394 sc-eQTL 5.28e-01 -0.0701 0.111 0.841 CD4_CTL L2
ENSG00000125703 ATG4C 156648 sc-eQTL 4.83e-01 -0.0808 0.115 0.841 CD4_CTL L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.68e-01 0.0893 0.123 0.841 CD4_CTL L2
ENSG00000162607 USP1 504483 sc-eQTL 5.64e-01 0.0676 0.117 0.841 CD4_CTL L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 3.02e-01 -0.121 0.117 0.841 CD4_CTL L2
ENSG00000079739 PGM1 -652631 sc-eQTL 4.73e-01 0.0708 0.0984 0.838 CD4_Naive L2
ENSG00000088035 ALG6 -426795 sc-eQTL 3.81e-01 -0.0938 0.107 0.838 CD4_Naive L2
ENSG00000116641 DOCK7 252394 sc-eQTL 2.31e-01 -0.126 0.105 0.838 CD4_Naive L2
ENSG00000125703 ATG4C 156648 sc-eQTL 3.38e-01 0.0892 0.0928 0.838 CD4_Naive L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.98e-02 0.192 0.113 0.838 CD4_Naive L2
ENSG00000162607 USP1 504483 sc-eQTL 6.51e-01 -0.0393 0.0868 0.838 CD4_Naive L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 1.78e-01 -0.152 0.112 0.838 CD4_Naive L2
ENSG00000079739 PGM1 -652631 sc-eQTL 1.17e-01 0.158 0.1 0.838 CD4_TCM L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.69e-01 -0.161 0.117 0.838 CD4_TCM L2
ENSG00000116641 DOCK7 252394 sc-eQTL 8.84e-01 -0.0152 0.104 0.838 CD4_TCM L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.00e-01 0.0389 0.101 0.838 CD4_TCM L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 6.39e-01 0.0559 0.119 0.838 CD4_TCM L2
ENSG00000162607 USP1 504483 sc-eQTL 9.09e-01 -0.0112 0.0976 0.838 CD4_TCM L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 6.85e-01 -0.0468 0.115 0.838 CD4_TCM L2
ENSG00000079739 PGM1 -652631 sc-eQTL 6.50e-01 -0.0547 0.12 0.838 CD4_TEM L2
ENSG00000088035 ALG6 -426795 sc-eQTL 5.79e-01 -0.0673 0.121 0.838 CD4_TEM L2
ENSG00000116641 DOCK7 252394 sc-eQTL 4.85e-01 -0.0825 0.118 0.838 CD4_TEM L2
ENSG00000125703 ATG4C 156648 sc-eQTL 2.14e-01 -0.142 0.114 0.838 CD4_TEM L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 7.35e-01 -0.0401 0.118 0.838 CD4_TEM L2
ENSG00000162607 USP1 504483 sc-eQTL 9.50e-01 -0.00707 0.112 0.838 CD4_TEM L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.30e-01 -0.147 0.122 0.838 CD4_TEM L2
ENSG00000079739 PGM1 -652631 sc-eQTL 5.11e-01 0.0711 0.108 0.838 CD8_CTL L2
ENSG00000088035 ALG6 -426795 sc-eQTL 7.43e-01 0.0377 0.115 0.838 CD8_CTL L2
ENSG00000116641 DOCK7 252394 sc-eQTL 9.77e-01 0.00311 0.109 0.838 CD8_CTL L2
ENSG00000125703 ATG4C 156648 sc-eQTL 2.94e-01 0.122 0.116 0.838 CD8_CTL L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.74e-01 0.0864 0.12 0.838 CD8_CTL L2
ENSG00000162607 USP1 504483 sc-eQTL 8.86e-01 0.0156 0.108 0.838 CD8_CTL L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 6.30e-01 -0.0595 0.123 0.838 CD8_CTL L2
ENSG00000079739 PGM1 -652631 sc-eQTL 1.24e-01 0.172 0.112 0.838 CD8_Naive L2
ENSG00000088035 ALG6 -426795 sc-eQTL 7.69e-01 -0.0341 0.116 0.838 CD8_Naive L2
ENSG00000116641 DOCK7 252394 sc-eQTL 8.80e-01 -0.0182 0.12 0.838 CD8_Naive L2
ENSG00000125703 ATG4C 156648 sc-eQTL 5.76e-01 -0.0645 0.115 0.838 CD8_Naive L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.40e-01 -0.0236 0.117 0.838 CD8_Naive L2
ENSG00000162607 USP1 504483 sc-eQTL 2.91e-01 0.104 0.0984 0.838 CD8_Naive L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 7.00e-01 0.0424 0.11 0.838 CD8_Naive L2
ENSG00000079739 PGM1 -652631 sc-eQTL 8.56e-01 -0.0229 0.126 0.843 CD8_TCM L2
ENSG00000088035 ALG6 -426795 sc-eQTL 9.62e-02 -0.211 0.126 0.843 CD8_TCM L2
ENSG00000116641 DOCK7 252394 sc-eQTL 7.70e-01 -0.0363 0.124 0.843 CD8_TCM L2
ENSG00000125703 ATG4C 156648 sc-eQTL 1.76e-01 -0.171 0.126 0.843 CD8_TCM L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.86e-01 -0.132 0.123 0.843 CD8_TCM L2
ENSG00000162607 USP1 504483 sc-eQTL 2.86e-01 0.127 0.118 0.843 CD8_TCM L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.70e-01 0.139 0.125 0.843 CD8_TCM L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.93e-02 0.263 0.12 0.826 CD8_TEM L2
ENSG00000088035 ALG6 -426795 sc-eQTL 6.76e-01 0.0509 0.122 0.826 CD8_TEM L2
ENSG00000116641 DOCK7 252394 sc-eQTL 5.90e-01 0.0635 0.118 0.826 CD8_TEM L2
ENSG00000125703 ATG4C 156648 sc-eQTL 2.95e-01 -0.119 0.113 0.826 CD8_TEM L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 5.60e-01 0.0716 0.123 0.826 CD8_TEM L2
ENSG00000162607 USP1 504483 sc-eQTL 9.33e-01 0.00988 0.117 0.826 CD8_TEM L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 4.77e-01 0.0846 0.119 0.826 CD8_TEM L2
ENSG00000079739 PGM1 -652631 sc-eQTL 7.80e-01 0.0334 0.119 0.835 MAIT L2
ENSG00000088035 ALG6 -426795 sc-eQTL 3.33e-01 0.114 0.118 0.835 MAIT L2
ENSG00000116641 DOCK7 252394 sc-eQTL 5.69e-01 -0.0644 0.113 0.835 MAIT L2
ENSG00000125703 ATG4C 156648 sc-eQTL 5.95e-02 -0.224 0.118 0.835 MAIT L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.63e-01 -0.134 0.119 0.835 MAIT L2
ENSG00000162607 USP1 504483 sc-eQTL 3.41e-01 0.113 0.118 0.835 MAIT L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.28e-01 0.148 0.122 0.835 MAIT L2
ENSG00000079739 PGM1 -652631 sc-eQTL 6.77e-01 -0.0483 0.116 0.838 NK_CD56bright L2
ENSG00000088035 ALG6 -426795 sc-eQTL 4.19e-01 0.0958 0.118 0.838 NK_CD56bright L2
ENSG00000116641 DOCK7 252394 sc-eQTL 7.02e-01 -0.0393 0.103 0.838 NK_CD56bright L2
ENSG00000125703 ATG4C 156648 sc-eQTL 6.70e-01 0.0489 0.115 0.838 NK_CD56bright L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.07e-01 -0.151 0.119 0.838 NK_CD56bright L2
ENSG00000162607 USP1 504483 sc-eQTL 8.06e-01 -0.0304 0.123 0.838 NK_CD56bright L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 3.88e-01 0.102 0.118 0.838 NK_CD56bright L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.51e-01 -0.106 0.0921 0.838 NK_CD56dim L2
ENSG00000088035 ALG6 -426795 sc-eQTL 2.35e-01 0.139 0.117 0.838 NK_CD56dim L2
ENSG00000116641 DOCK7 252394 sc-eQTL 1.37e-01 0.151 0.101 0.838 NK_CD56dim L2
ENSG00000125703 ATG4C 156648 sc-eQTL 4.95e-01 -0.0707 0.103 0.838 NK_CD56dim L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 7.75e-01 0.0337 0.118 0.838 NK_CD56dim L2
ENSG00000162607 USP1 504483 sc-eQTL 7.50e-02 -0.203 0.113 0.838 NK_CD56dim L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 9.89e-01 0.00169 0.127 0.838 NK_CD56dim L2
ENSG00000079739 PGM1 -652631 sc-eQTL 3.27e-01 0.122 0.124 0.838 NK_HLA L2
ENSG00000088035 ALG6 -426795 sc-eQTL 3.93e-01 0.11 0.129 0.838 NK_HLA L2
ENSG00000116641 DOCK7 252394 sc-eQTL 1.35e-01 -0.147 0.0981 0.838 NK_HLA L2
ENSG00000125703 ATG4C 156648 sc-eQTL 9.89e-01 0.00156 0.115 0.838 NK_HLA L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 7.87e-01 0.0326 0.12 0.838 NK_HLA L2
ENSG00000162607 USP1 504483 sc-eQTL 9.54e-01 -0.00729 0.126 0.838 NK_HLA L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 8.50e-01 0.0217 0.115 0.838 NK_HLA L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.70e-01 0.111 0.1 0.838 NK_cytokine L2
ENSG00000088035 ALG6 -426795 sc-eQTL 9.16e-01 0.0121 0.114 0.838 NK_cytokine L2
ENSG00000116641 DOCK7 252394 sc-eQTL 6.28e-01 -0.0511 0.105 0.838 NK_cytokine L2
ENSG00000125703 ATG4C 156648 sc-eQTL 8.37e-01 0.0222 0.108 0.838 NK_cytokine L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.85e-01 0.0162 0.112 0.838 NK_cytokine L2
ENSG00000162607 USP1 504483 sc-eQTL 8.35e-01 -0.0244 0.117 0.838 NK_cytokine L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 4.17e-01 0.0966 0.119 0.838 NK_cytokine L2
ENSG00000079739 PGM1 -652631 sc-eQTL 7.79e-02 0.263 0.148 0.848 PB L2
ENSG00000088035 ALG6 -426795 sc-eQTL 6.75e-01 0.066 0.157 0.848 PB L2
ENSG00000116641 DOCK7 252394 sc-eQTL 2.90e-01 0.178 0.167 0.848 PB L2
ENSG00000125703 ATG4C 156648 sc-eQTL 6.12e-01 0.0744 0.146 0.848 PB L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 1.35e-01 -0.218 0.145 0.848 PB L2
ENSG00000162607 USP1 504483 sc-eQTL 8.87e-01 -0.0207 0.146 0.848 PB L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.08e-01 0.106 0.16 0.848 PB L2
ENSG00000079739 PGM1 -652631 sc-eQTL 7.62e-01 0.0331 0.109 0.837 Pro_T L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.89e-01 0.145 0.11 0.837 Pro_T L2
ENSG00000116641 DOCK7 252394 sc-eQTL 9.39e-01 -0.00853 0.111 0.837 Pro_T L2
ENSG00000125703 ATG4C 156648 sc-eQTL 4.24e-01 0.0779 0.0973 0.837 Pro_T L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 2.72e-01 0.107 0.0974 0.837 Pro_T L2
ENSG00000162607 USP1 504483 sc-eQTL 2.51e-01 -0.0771 0.067 0.837 Pro_T L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.44e-01 -0.0689 0.113 0.837 Pro_T L2
ENSG00000079739 PGM1 -652631 sc-eQTL 8.11e-01 -0.0279 0.116 0.838 Treg L2
ENSG00000088035 ALG6 -426795 sc-eQTL 9.29e-02 -0.209 0.124 0.838 Treg L2
ENSG00000116641 DOCK7 252394 sc-eQTL 3.05e-01 0.117 0.114 0.838 Treg L2
ENSG00000125703 ATG4C 156648 sc-eQTL 5.45e-01 0.0707 0.117 0.838 Treg L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 3.35e-01 0.118 0.122 0.838 Treg L2
ENSG00000162607 USP1 504483 sc-eQTL 2.05e-01 0.15 0.118 0.838 Treg L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 4.43e-01 -0.0898 0.117 0.838 Treg L2
ENSG00000079739 PGM1 -652631 sc-eQTL 3.20e-01 -0.12 0.12 0.841 cDC L2
ENSG00000088035 ALG6 -426795 sc-eQTL 4.50e-01 -0.0925 0.122 0.841 cDC L2
ENSG00000116641 DOCK7 252394 sc-eQTL 9.55e-01 -0.00672 0.12 0.841 cDC L2
ENSG00000125703 ATG4C 156648 sc-eQTL 8.34e-01 -0.022 0.104 0.841 cDC L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 7.38e-01 -0.0444 0.132 0.841 cDC L2
ENSG00000162607 USP1 504483 sc-eQTL 8.44e-01 0.0232 0.118 0.841 cDC L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 2.04e-01 -0.135 0.106 0.841 cDC L2
ENSG00000079739 PGM1 -652631 sc-eQTL 3.40e-01 0.103 0.108 0.838 cMono_IL1B L2
ENSG00000088035 ALG6 -426795 sc-eQTL 9.46e-01 0.00735 0.108 0.838 cMono_IL1B L2
ENSG00000116641 DOCK7 252394 sc-eQTL 6.54e-02 -0.21 0.113 0.838 cMono_IL1B L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.79e-01 0.0226 0.0804 0.838 cMono_IL1B L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 9.44e-01 0.00806 0.114 0.838 cMono_IL1B L2
ENSG00000162607 USP1 504483 sc-eQTL 8.38e-01 0.0206 0.1 0.838 cMono_IL1B L2
ENSG00000240563 L1TD1 745931 sc-eQTL 7.59e-01 -0.031 0.101 0.838 cMono_IL1B L2
ENSG00000079739 PGM1 -652631 sc-eQTL 9.26e-01 0.0113 0.121 0.838 cMono_S100A L2
ENSG00000088035 ALG6 -426795 sc-eQTL 8.34e-02 -0.212 0.122 0.838 cMono_S100A L2
ENSG00000116641 DOCK7 252394 sc-eQTL 2.82e-01 0.122 0.113 0.838 cMono_S100A L2
ENSG00000125703 ATG4C 156648 sc-eQTL 4.53e-01 0.074 0.0984 0.838 cMono_S100A L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.92e-01 0.0764 0.111 0.838 cMono_S100A L2
ENSG00000162607 USP1 504483 sc-eQTL 7.55e-01 0.0357 0.114 0.838 cMono_S100A L2
ENSG00000240563 L1TD1 745931 sc-eQTL 9.02e-02 -0.161 0.0945 0.838 cMono_S100A L2
ENSG00000079739 PGM1 -652631 sc-eQTL 4.13e-01 0.108 0.131 0.833 gdT L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.42e-01 -0.206 0.139 0.833 gdT L2
ENSG00000116641 DOCK7 252394 sc-eQTL 4.41e-01 0.106 0.137 0.833 gdT L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.64e-01 -0.0395 0.131 0.833 gdT L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 1.94e-01 0.181 0.139 0.833 gdT L2
ENSG00000162607 USP1 504483 sc-eQTL 1.54e-02 0.317 0.129 0.833 gdT L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 1.79e-01 -0.184 0.137 0.833 gdT L2
ENSG00000079739 PGM1 -652631 sc-eQTL 5.48e-01 0.0732 0.122 0.84 intMono L2
ENSG00000088035 ALG6 -426795 sc-eQTL 4.90e-01 -0.0783 0.113 0.84 intMono L2
ENSG00000116641 DOCK7 252394 sc-eQTL 5.66e-01 0.0664 0.116 0.84 intMono L2
ENSG00000125703 ATG4C 156648 sc-eQTL 3.01e-01 0.114 0.11 0.84 intMono L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.71e-02 -0.208 0.121 0.84 intMono L2
ENSG00000162607 USP1 504483 sc-eQTL 3.47e-01 -0.116 0.123 0.84 intMono L2
ENSG00000240563 L1TD1 745931 sc-eQTL 9.61e-01 -0.00445 0.091 0.84 intMono L2
ENSG00000079739 PGM1 -652631 sc-eQTL 2.68e-01 0.119 0.107 0.835 ncMono L2
ENSG00000088035 ALG6 -426795 sc-eQTL 1.64e-01 0.165 0.118 0.835 ncMono L2
ENSG00000116641 DOCK7 252394 sc-eQTL 7.20e-01 -0.0418 0.116 0.835 ncMono L2
ENSG00000125703 ATG4C 156648 sc-eQTL 7.61e-01 -0.0332 0.109 0.835 ncMono L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 5.54e-01 0.0673 0.114 0.835 ncMono L2
ENSG00000162607 USP1 504483 sc-eQTL 3.74e-02 -0.241 0.115 0.835 ncMono L2
ENSG00000240563 L1TD1 745931 sc-eQTL 8.21e-01 -0.0187 0.0824 0.835 ncMono L2
ENSG00000079739 PGM1 -652631 sc-eQTL 5.97e-01 -0.073 0.138 0.836 pDC L2
ENSG00000088035 ALG6 -426795 sc-eQTL 4.77e-01 -0.0956 0.134 0.836 pDC L2
ENSG00000116641 DOCK7 252394 sc-eQTL 5.22e-01 0.088 0.137 0.836 pDC L2
ENSG00000125703 ATG4C 156648 sc-eQTL 8.84e-01 0.0181 0.123 0.836 pDC L2
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.63e-01 0.101 0.138 0.836 pDC L2
ENSG00000162607 USP1 504483 sc-eQTL 8.19e-01 0.0323 0.141 0.836 pDC L2
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.42e-01 -0.0746 0.122 0.836 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -652631 sc-eQTL 2.64e-02 0.25 0.112 0.838 B_Memory LOneK1K
ENSG00000088035 ALG6 -426795 sc-eQTL 8.60e-01 0.022 0.125 0.838 B_Memory LOneK1K
ENSG00000116641 DOCK7 252394 sc-eQTL 2.55e-01 -0.124 0.108 0.838 B_Memory LOneK1K
ENSG00000125703 ATG4C 156648 sc-eQTL 3.35e-01 0.0846 0.0877 0.838 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -652941 sc-eQTL 5.64e-01 -0.0667 0.115 0.838 B_Memory LOneK1K
ENSG00000162607 USP1 504483 sc-eQTL 2.63e-01 0.125 0.112 0.838 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -582592 sc-eQTL 7.37e-01 0.0404 0.12 0.838 B_Memory LOneK1K
ENSG00000079739 PGM1 -652631 sc-eQTL 9.65e-01 -0.00505 0.116 0.838 B_Naive LOneK1K
ENSG00000088035 ALG6 -426795 sc-eQTL 6.64e-02 -0.219 0.119 0.838 B_Naive LOneK1K
ENSG00000116641 DOCK7 252394 sc-eQTL 3.71e-02 -0.232 0.111 0.838 B_Naive LOneK1K
ENSG00000125703 ATG4C 156648 sc-eQTL 8.18e-01 -0.0197 0.0853 0.838 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.20e-02 0.244 0.119 0.838 B_Naive LOneK1K
ENSG00000162607 USP1 504483 sc-eQTL 5.00e-01 -0.0699 0.104 0.838 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -582592 sc-eQTL 9.00e-01 -0.0152 0.121 0.838 B_Naive LOneK1K
ENSG00000079739 PGM1 -652631 sc-eQTL 6.37e-01 0.0522 0.11 0.838 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -426795 sc-eQTL 4.64e-01 -0.0784 0.107 0.838 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 252394 sc-eQTL 4.83e-01 -0.0756 0.108 0.838 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 156648 sc-eQTL 3.14e-01 0.075 0.0743 0.838 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -652941 sc-eQTL 4.75e-01 0.0788 0.11 0.838 CD14_Mono LOneK1K
ENSG00000162607 USP1 504483 sc-eQTL 3.90e-01 0.0809 0.0939 0.838 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 745931 sc-eQTL 4.16e-01 -0.0831 0.102 0.838 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -652631 sc-eQTL 4.99e-01 0.0716 0.106 0.841 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -426795 sc-eQTL 7.61e-01 0.0366 0.12 0.841 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 252394 sc-eQTL 9.88e-01 -0.00175 0.119 0.841 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 156648 sc-eQTL 8.60e-01 -0.0178 0.101 0.841 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -652941 sc-eQTL 3.56e-01 -0.109 0.117 0.841 CD16_Mono LOneK1K
ENSG00000162607 USP1 504483 sc-eQTL 2.67e-01 -0.123 0.11 0.841 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 745931 sc-eQTL 8.44e-01 0.0148 0.0754 0.841 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -652631 sc-eQTL 6.17e-01 0.0452 0.0901 0.838 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -426795 sc-eQTL 3.33e-01 0.105 0.108 0.838 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 252394 sc-eQTL 7.77e-01 0.0275 0.097 0.838 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 156648 sc-eQTL 8.99e-01 -0.0123 0.0968 0.838 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -652941 sc-eQTL 8.18e-01 0.0264 0.115 0.838 NK_CD56dim LOneK1K
ENSG00000162607 USP1 504483 sc-eQTL 2.35e-01 -0.124 0.104 0.838 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -582592 sc-eQTL 5.82e-01 0.0699 0.127 0.838 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -652631 eQTL 0.819 -0.00506 0.0222 0.00236 0.0 0.199

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina