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Genes within 1Mb (chr1:62940214:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -653197 sc-eQTL 7.37e-01 0.0256 0.0764 0.344 B L1
ENSG00000088035 ALG6 -427361 sc-eQTL 4.76e-01 -0.0564 0.079 0.344 B L1
ENSG00000116641 DOCK7 251828 sc-eQTL 2.26e-01 -0.0957 0.0789 0.344 B L1
ENSG00000125703 ATG4C 156082 sc-eQTL 9.04e-01 0.00661 0.055 0.344 B L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 7.47e-01 -0.0283 0.0875 0.344 B L1
ENSG00000162607 USP1 503917 sc-eQTL 4.26e-02 0.154 0.0752 0.344 B L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 9.66e-01 0.00388 0.0897 0.344 B L1
ENSG00000079739 PGM1 -653197 sc-eQTL 6.22e-01 -0.0327 0.0662 0.344 CD4T L1
ENSG00000088035 ALG6 -427361 sc-eQTL 5.05e-01 -0.0488 0.073 0.344 CD4T L1
ENSG00000116641 DOCK7 251828 sc-eQTL 6.45e-01 -0.0341 0.074 0.344 CD4T L1
ENSG00000125703 ATG4C 156082 sc-eQTL 9.98e-01 0.000169 0.0597 0.344 CD4T L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 8.00e-01 0.0215 0.0848 0.344 CD4T L1
ENSG00000162607 USP1 503917 sc-eQTL 9.46e-01 -0.00393 0.058 0.344 CD4T L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 8.74e-01 -0.0121 0.0761 0.344 CD4T L1
ENSG00000079739 PGM1 -653197 sc-eQTL 4.38e-02 0.147 0.0727 0.344 CD8T L1
ENSG00000088035 ALG6 -427361 sc-eQTL 4.83e-01 0.0568 0.0808 0.344 CD8T L1
ENSG00000116641 DOCK7 251828 sc-eQTL 1.30e-01 -0.124 0.0815 0.344 CD8T L1
ENSG00000125703 ATG4C 156082 sc-eQTL 9.62e-01 0.00367 0.0778 0.344 CD8T L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 2.17e-01 -0.107 0.0867 0.344 CD8T L1
ENSG00000162607 USP1 503917 sc-eQTL 3.11e-01 -0.0688 0.0676 0.344 CD8T L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 1.58e-01 0.122 0.0863 0.344 CD8T L1
ENSG00000079739 PGM1 -653197 sc-eQTL 2.94e-02 -0.175 0.0798 0.345 DC L1
ENSG00000088035 ALG6 -427361 sc-eQTL 1.28e-01 -0.127 0.0829 0.345 DC L1
ENSG00000116641 DOCK7 251828 sc-eQTL 1.44e-01 -0.125 0.0849 0.345 DC L1
ENSG00000125703 ATG4C 156082 sc-eQTL 1.18e-02 -0.167 0.0658 0.345 DC L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.27e-01 -0.142 0.0929 0.345 DC L1
ENSG00000162607 USP1 503917 sc-eQTL 6.97e-01 0.0318 0.0815 0.345 DC L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 1.37e-03 -0.257 0.0792 0.345 DC L1
ENSG00000079739 PGM1 -653197 sc-eQTL 3.63e-01 -0.0727 0.0798 0.344 Mono L1
ENSG00000088035 ALG6 -427361 sc-eQTL 8.90e-01 0.0115 0.0834 0.344 Mono L1
ENSG00000116641 DOCK7 251828 sc-eQTL 1.18e-01 -0.126 0.0802 0.344 Mono L1
ENSG00000125703 ATG4C 156082 sc-eQTL 2.34e-01 0.0649 0.0544 0.344 Mono L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.38e-01 0.0825 0.086 0.344 Mono L1
ENSG00000162607 USP1 503917 sc-eQTL 6.58e-01 0.0314 0.0708 0.344 Mono L1
ENSG00000240563 L1TD1 745365 sc-eQTL 3.18e-01 -0.0659 0.0659 0.344 Mono L1
ENSG00000079739 PGM1 -653197 sc-eQTL 2.15e-01 0.0831 0.0668 0.345 NK L1
ENSG00000088035 ALG6 -427361 sc-eQTL 1.53e-01 -0.112 0.0783 0.345 NK L1
ENSG00000116641 DOCK7 251828 sc-eQTL 7.58e-01 -0.02 0.0648 0.345 NK L1
ENSG00000125703 ATG4C 156082 sc-eQTL 2.60e-01 0.0783 0.0694 0.345 NK L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.39e-01 -0.128 0.086 0.345 NK L1
ENSG00000162607 USP1 503917 sc-eQTL 9.55e-01 0.00439 0.0773 0.345 NK L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 3.27e-02 0.2 0.0929 0.345 NK L1
ENSG00000079739 PGM1 -653197 sc-eQTL 8.01e-01 0.0192 0.0759 0.344 Other_T L1
ENSG00000088035 ALG6 -427361 sc-eQTL 1.39e-01 0.113 0.0759 0.344 Other_T L1
ENSG00000116641 DOCK7 251828 sc-eQTL 1.47e-01 -0.113 0.0775 0.344 Other_T L1
ENSG00000125703 ATG4C 156082 sc-eQTL 9.29e-01 -0.00603 0.0674 0.344 Other_T L1
ENSG00000142856 ITGB3BP -653507 sc-eQTL 7.54e-02 -0.106 0.0593 0.344 Other_T L1
ENSG00000162607 USP1 503917 sc-eQTL 2.87e-01 0.0552 0.0517 0.344 Other_T L1
ENSG00000203965 EFCAB7 -583158 sc-eQTL 4.55e-01 0.069 0.0921 0.344 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -653197 sc-eQTL 9.41e-01 0.00769 0.104 0.355 B_Activated L2
ENSG00000088035 ALG6 -427361 sc-eQTL 1.43e-01 -0.146 0.0989 0.355 B_Activated L2
ENSG00000116641 DOCK7 251828 sc-eQTL 9.73e-01 -0.00312 0.0927 0.355 B_Activated L2
ENSG00000125703 ATG4C 156082 sc-eQTL 7.76e-01 0.0278 0.0974 0.355 B_Activated L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.92e-02 -0.187 0.0942 0.355 B_Activated L2
ENSG00000162607 USP1 503917 sc-eQTL 2.40e-01 -0.121 0.103 0.355 B_Activated L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 5.93e-01 -0.0482 0.0901 0.355 B_Activated L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.46e-01 0.0869 0.092 0.343 B_Intermediate L2
ENSG00000088035 ALG6 -427361 sc-eQTL 5.44e-01 0.0568 0.0936 0.343 B_Intermediate L2
ENSG00000116641 DOCK7 251828 sc-eQTL 4.01e-01 0.0751 0.0893 0.343 B_Intermediate L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.28e-01 0.0367 0.0757 0.343 B_Intermediate L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.61e-01 -0.0665 0.0901 0.343 B_Intermediate L2
ENSG00000162607 USP1 503917 sc-eQTL 4.94e-02 -0.176 0.0893 0.343 B_Intermediate L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 6.32e-01 0.0429 0.0893 0.343 B_Intermediate L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.60e-01 -0.0825 0.0899 0.343 B_Memory L2
ENSG00000088035 ALG6 -427361 sc-eQTL 6.41e-02 -0.169 0.0908 0.343 B_Memory L2
ENSG00000116641 DOCK7 251828 sc-eQTL 7.44e-01 -0.028 0.0859 0.343 B_Memory L2
ENSG00000125703 ATG4C 156082 sc-eQTL 1.98e-01 -0.105 0.0813 0.343 B_Memory L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.15e-01 0.147 0.0928 0.343 B_Memory L2
ENSG00000162607 USP1 503917 sc-eQTL 3.96e-02 0.193 0.0933 0.343 B_Memory L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 6.45e-02 -0.171 0.092 0.343 B_Memory L2
ENSG00000079739 PGM1 -653197 sc-eQTL 7.04e-01 -0.0351 0.0922 0.344 B_Naive1 L2
ENSG00000088035 ALG6 -427361 sc-eQTL 1.11e-01 0.147 0.092 0.344 B_Naive1 L2
ENSG00000116641 DOCK7 251828 sc-eQTL 6.78e-01 -0.0369 0.0887 0.344 B_Naive1 L2
ENSG00000125703 ATG4C 156082 sc-eQTL 5.64e-01 -0.0395 0.0683 0.344 B_Naive1 L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.81e-01 0.0501 0.0906 0.344 B_Naive1 L2
ENSG00000162607 USP1 503917 sc-eQTL 8.08e-01 -0.0194 0.0797 0.344 B_Naive1 L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 4.84e-01 0.0677 0.0966 0.344 B_Naive1 L2
ENSG00000079739 PGM1 -653197 sc-eQTL 4.73e-01 -0.0652 0.0907 0.341 B_Naive2 L2
ENSG00000088035 ALG6 -427361 sc-eQTL 3.48e-01 -0.0888 0.0945 0.341 B_Naive2 L2
ENSG00000116641 DOCK7 251828 sc-eQTL 8.20e-02 -0.158 0.0904 0.341 B_Naive2 L2
ENSG00000125703 ATG4C 156082 sc-eQTL 5.39e-01 0.0539 0.0875 0.341 B_Naive2 L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.78e-01 0.0529 0.0949 0.341 B_Naive2 L2
ENSG00000162607 USP1 503917 sc-eQTL 2.03e-01 0.115 0.0901 0.341 B_Naive2 L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 7.89e-01 0.0254 0.0945 0.341 B_Naive2 L2
ENSG00000079739 PGM1 -653197 sc-eQTL 2.59e-01 0.103 0.0909 0.345 CD4_CTL L2
ENSG00000088035 ALG6 -427361 sc-eQTL 4.64e-02 -0.191 0.0955 0.345 CD4_CTL L2
ENSG00000116641 DOCK7 251828 sc-eQTL 2.66e-01 -0.0937 0.084 0.345 CD4_CTL L2
ENSG00000125703 ATG4C 156082 sc-eQTL 8.52e-01 0.0163 0.0872 0.345 CD4_CTL L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.76e-01 0.0665 0.0932 0.345 CD4_CTL L2
ENSG00000162607 USP1 503917 sc-eQTL 9.99e-01 -9.89e-05 0.0888 0.345 CD4_CTL L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 4.77e-01 -0.0631 0.0885 0.345 CD4_CTL L2
ENSG00000079739 PGM1 -653197 sc-eQTL 8.96e-01 -0.00978 0.0749 0.344 CD4_Naive L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.05e-01 -0.0201 0.0813 0.344 CD4_Naive L2
ENSG00000116641 DOCK7 251828 sc-eQTL 5.42e-01 -0.0488 0.0799 0.344 CD4_Naive L2
ENSG00000125703 ATG4C 156082 sc-eQTL 9.86e-01 -0.00125 0.0707 0.344 CD4_Naive L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.99e-01 0.0584 0.0863 0.344 CD4_Naive L2
ENSG00000162607 USP1 503917 sc-eQTL 8.64e-01 0.0113 0.066 0.344 CD4_Naive L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 5.90e-01 -0.0462 0.0857 0.344 CD4_Naive L2
ENSG00000079739 PGM1 -653197 sc-eQTL 8.29e-01 0.0168 0.0774 0.344 CD4_TCM L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.45e-01 -0.0176 0.0899 0.344 CD4_TCM L2
ENSG00000116641 DOCK7 251828 sc-eQTL 7.94e-01 -0.0209 0.0797 0.344 CD4_TCM L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.05e-01 0.0401 0.0775 0.344 CD4_TCM L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 9.72e-01 -0.00323 0.0915 0.344 CD4_TCM L2
ENSG00000162607 USP1 503917 sc-eQTL 7.03e-01 -0.0286 0.075 0.344 CD4_TCM L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 4.20e-01 0.0714 0.0884 0.344 CD4_TCM L2
ENSG00000079739 PGM1 -653197 sc-eQTL 1.21e-01 -0.141 0.0907 0.344 CD4_TEM L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.32e-01 -0.0195 0.0917 0.344 CD4_TEM L2
ENSG00000116641 DOCK7 251828 sc-eQTL 3.36e-01 0.086 0.0892 0.344 CD4_TEM L2
ENSG00000125703 ATG4C 156082 sc-eQTL 5.42e-01 -0.053 0.0867 0.344 CD4_TEM L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 6.28e-01 -0.0434 0.0896 0.344 CD4_TEM L2
ENSG00000162607 USP1 503917 sc-eQTL 1.57e-01 -0.12 0.0845 0.344 CD4_TEM L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 1.62e-01 -0.13 0.0924 0.344 CD4_TEM L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.24e-02 0.176 0.0816 0.344 CD8_CTL L2
ENSG00000088035 ALG6 -427361 sc-eQTL 6.60e-01 -0.0386 0.0877 0.344 CD8_CTL L2
ENSG00000116641 DOCK7 251828 sc-eQTL 2.39e-01 -0.098 0.083 0.344 CD8_CTL L2
ENSG00000125703 ATG4C 156082 sc-eQTL 9.18e-01 0.00912 0.0886 0.344 CD8_CTL L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 7.31e-01 -0.0317 0.0921 0.344 CD8_CTL L2
ENSG00000162607 USP1 503917 sc-eQTL 4.80e-01 -0.0584 0.0824 0.344 CD8_CTL L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 9.14e-01 0.0102 0.0944 0.344 CD8_CTL L2
ENSG00000079739 PGM1 -653197 sc-eQTL 1.14e-01 0.135 0.0847 0.344 CD8_Naive L2
ENSG00000088035 ALG6 -427361 sc-eQTL 2.23e-01 0.107 0.0879 0.344 CD8_Naive L2
ENSG00000116641 DOCK7 251828 sc-eQTL 4.51e-02 -0.182 0.0903 0.344 CD8_Naive L2
ENSG00000125703 ATG4C 156082 sc-eQTL 9.25e-01 -0.00824 0.0875 0.344 CD8_Naive L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 2.11e-01 -0.111 0.0883 0.344 CD8_Naive L2
ENSG00000162607 USP1 503917 sc-eQTL 3.32e-01 -0.0728 0.0748 0.344 CD8_Naive L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 3.06e-01 0.0855 0.0834 0.344 CD8_Naive L2
ENSG00000079739 PGM1 -653197 sc-eQTL 6.73e-01 0.04 0.0946 0.338 CD8_TCM L2
ENSG00000088035 ALG6 -427361 sc-eQTL 2.67e-01 -0.106 0.0955 0.338 CD8_TCM L2
ENSG00000116641 DOCK7 251828 sc-eQTL 5.30e-01 0.0587 0.0934 0.338 CD8_TCM L2
ENSG00000125703 ATG4C 156082 sc-eQTL 1.98e-01 0.123 0.0952 0.338 CD8_TCM L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.51e-01 0.0554 0.0929 0.338 CD8_TCM L2
ENSG00000162607 USP1 503917 sc-eQTL 3.26e-01 0.0878 0.0892 0.338 CD8_TCM L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 2.11e-01 0.119 0.0943 0.338 CD8_TCM L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.22e-01 0.0923 0.0928 0.336 CD8_TEM L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.00e-01 0.0237 0.0934 0.336 CD8_TEM L2
ENSG00000116641 DOCK7 251828 sc-eQTL 4.47e-01 -0.069 0.0904 0.336 CD8_TEM L2
ENSG00000125703 ATG4C 156082 sc-eQTL 3.68e-01 -0.0784 0.0869 0.336 CD8_TEM L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.39e-01 0.139 0.0937 0.336 CD8_TEM L2
ENSG00000162607 USP1 503917 sc-eQTL 8.02e-02 -0.157 0.0892 0.336 CD8_TEM L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 7.14e-02 0.164 0.0906 0.336 CD8_TEM L2
ENSG00000079739 PGM1 -653197 sc-eQTL 2.47e-01 0.102 0.0875 0.348 MAIT L2
ENSG00000088035 ALG6 -427361 sc-eQTL 3.21e-01 -0.0862 0.0867 0.348 MAIT L2
ENSG00000116641 DOCK7 251828 sc-eQTL 2.76e-01 -0.0907 0.083 0.348 MAIT L2
ENSG00000125703 ATG4C 156082 sc-eQTL 5.08e-01 -0.0581 0.0877 0.348 MAIT L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.26e-02 -0.218 0.0867 0.348 MAIT L2
ENSG00000162607 USP1 503917 sc-eQTL 4.96e-01 0.0594 0.0872 0.348 MAIT L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 6.91e-01 0.036 0.0905 0.348 MAIT L2
ENSG00000079739 PGM1 -653197 sc-eQTL 7.34e-01 -0.03 0.0882 0.344 NK_CD56bright L2
ENSG00000088035 ALG6 -427361 sc-eQTL 7.71e-01 0.0263 0.0904 0.344 NK_CD56bright L2
ENSG00000116641 DOCK7 251828 sc-eQTL 7.60e-01 -0.0239 0.0783 0.344 NK_CD56bright L2
ENSG00000125703 ATG4C 156082 sc-eQTL 9.52e-01 0.00527 0.0875 0.344 NK_CD56bright L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.34e-01 0.0567 0.091 0.344 NK_CD56bright L2
ENSG00000162607 USP1 503917 sc-eQTL 5.75e-01 0.0528 0.0939 0.344 NK_CD56bright L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 8.91e-01 -0.0124 0.0899 0.344 NK_CD56bright L2
ENSG00000079739 PGM1 -653197 sc-eQTL 9.91e-01 -0.000821 0.0695 0.345 NK_CD56dim L2
ENSG00000088035 ALG6 -427361 sc-eQTL 9.12e-01 -0.00976 0.0882 0.345 NK_CD56dim L2
ENSG00000116641 DOCK7 251828 sc-eQTL 9.72e-01 0.00268 0.0767 0.345 NK_CD56dim L2
ENSG00000125703 ATG4C 156082 sc-eQTL 8.48e-01 0.0149 0.0779 0.345 NK_CD56dim L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.98e-01 -0.114 0.0883 0.345 NK_CD56dim L2
ENSG00000162607 USP1 503917 sc-eQTL 3.36e-01 -0.0827 0.0858 0.345 NK_CD56dim L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 3.38e-01 0.0918 0.0956 0.345 NK_CD56dim L2
ENSG00000079739 PGM1 -653197 sc-eQTL 2.06e-01 0.119 0.0937 0.352 NK_HLA L2
ENSG00000088035 ALG6 -427361 sc-eQTL 2.57e-01 -0.11 0.0973 0.352 NK_HLA L2
ENSG00000116641 DOCK7 251828 sc-eQTL 2.21e-01 -0.0913 0.0744 0.352 NK_HLA L2
ENSG00000125703 ATG4C 156082 sc-eQTL 1.72e-01 0.118 0.0864 0.352 NK_HLA L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.84e-01 -0.0793 0.091 0.352 NK_HLA L2
ENSG00000162607 USP1 503917 sc-eQTL 5.13e-01 0.0625 0.0953 0.352 NK_HLA L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 1.18e-01 0.136 0.0863 0.352 NK_HLA L2
ENSG00000079739 PGM1 -653197 sc-eQTL 2.04e-01 0.097 0.0761 0.345 NK_cytokine L2
ENSG00000088035 ALG6 -427361 sc-eQTL 1.35e-01 -0.129 0.0859 0.345 NK_cytokine L2
ENSG00000116641 DOCK7 251828 sc-eQTL 6.09e-01 0.041 0.08 0.345 NK_cytokine L2
ENSG00000125703 ATG4C 156082 sc-eQTL 2.80e-01 0.0885 0.0816 0.345 NK_cytokine L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.11e-01 -0.0859 0.0846 0.345 NK_cytokine L2
ENSG00000162607 USP1 503917 sc-eQTL 8.99e-01 -0.0113 0.0891 0.345 NK_cytokine L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 4.80e-01 0.0639 0.0902 0.345 NK_cytokine L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.44e-01 0.1 0.105 0.378 PB L2
ENSG00000088035 ALG6 -427361 sc-eQTL 5.91e-02 -0.208 0.109 0.378 PB L2
ENSG00000116641 DOCK7 251828 sc-eQTL 1.74e-01 0.161 0.118 0.378 PB L2
ENSG00000125703 ATG4C 156082 sc-eQTL 9.43e-01 -0.00737 0.104 0.378 PB L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.81e-01 -0.138 0.103 0.378 PB L2
ENSG00000162607 USP1 503917 sc-eQTL 4.86e-01 0.0718 0.103 0.378 PB L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 6.18e-01 -0.0567 0.113 0.378 PB L2
ENSG00000079739 PGM1 -653197 sc-eQTL 1.83e-01 -0.112 0.0838 0.341 Pro_T L2
ENSG00000088035 ALG6 -427361 sc-eQTL 9.95e-01 -0.000545 0.0857 0.341 Pro_T L2
ENSG00000116641 DOCK7 251828 sc-eQTL 7.06e-01 0.0325 0.0859 0.341 Pro_T L2
ENSG00000125703 ATG4C 156082 sc-eQTL 2.02e-01 0.096 0.0749 0.341 Pro_T L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.86e-01 0.0655 0.0753 0.341 Pro_T L2
ENSG00000162607 USP1 503917 sc-eQTL 1.24e-01 -0.0798 0.0516 0.341 Pro_T L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 8.61e-01 0.0154 0.0877 0.341 Pro_T L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.24e-01 -0.0876 0.0886 0.344 Treg L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.62e-01 0.0166 0.095 0.344 Treg L2
ENSG00000116641 DOCK7 251828 sc-eQTL 9.66e-01 -0.00367 0.0872 0.344 Treg L2
ENSG00000125703 ATG4C 156082 sc-eQTL 8.10e-01 0.0215 0.0891 0.344 Treg L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.78e-01 0.0519 0.0931 0.344 Treg L2
ENSG00000162607 USP1 503917 sc-eQTL 5.48e-01 0.0542 0.0901 0.344 Treg L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 8.54e-02 0.153 0.0886 0.344 Treg L2
ENSG00000079739 PGM1 -653197 sc-eQTL 2.22e-02 -0.197 0.0855 0.351 cDC L2
ENSG00000088035 ALG6 -427361 sc-eQTL 1.70e-01 -0.121 0.0875 0.351 cDC L2
ENSG00000116641 DOCK7 251828 sc-eQTL 1.08e-01 -0.138 0.0857 0.351 cDC L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.91e-02 -0.136 0.0743 0.351 cDC L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 2.14e-01 -0.118 0.0946 0.351 cDC L2
ENSG00000162607 USP1 503917 sc-eQTL 3.10e-01 0.0859 0.0843 0.351 cDC L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 3.11e-01 -0.0773 0.0761 0.351 cDC L2
ENSG00000079739 PGM1 -653197 sc-eQTL 7.71e-01 -0.024 0.0825 0.344 cMono_IL1B L2
ENSG00000088035 ALG6 -427361 sc-eQTL 1.71e-01 0.113 0.0823 0.344 cMono_IL1B L2
ENSG00000116641 DOCK7 251828 sc-eQTL 6.32e-03 -0.236 0.0856 0.344 cMono_IL1B L2
ENSG00000125703 ATG4C 156082 sc-eQTL 2.97e-01 0.0639 0.0611 0.344 cMono_IL1B L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.87e-01 0.0472 0.0867 0.344 cMono_IL1B L2
ENSG00000162607 USP1 503917 sc-eQTL 6.21e-01 0.0379 0.0765 0.344 cMono_IL1B L2
ENSG00000240563 L1TD1 745365 sc-eQTL 2.74e-01 -0.0841 0.0767 0.344 cMono_IL1B L2
ENSG00000079739 PGM1 -653197 sc-eQTL 3.76e-02 -0.189 0.0902 0.344 cMono_S100A L2
ENSG00000088035 ALG6 -427361 sc-eQTL 7.84e-01 -0.0253 0.0924 0.344 cMono_S100A L2
ENSG00000116641 DOCK7 251828 sc-eQTL 1.14e-01 0.135 0.0852 0.344 cMono_S100A L2
ENSG00000125703 ATG4C 156082 sc-eQTL 7.74e-01 -0.0213 0.0742 0.344 cMono_S100A L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.31e-01 0.0659 0.0836 0.344 cMono_S100A L2
ENSG00000162607 USP1 503917 sc-eQTL 6.48e-01 0.0394 0.0861 0.344 cMono_S100A L2
ENSG00000240563 L1TD1 745365 sc-eQTL 8.84e-01 0.0104 0.0717 0.344 cMono_S100A L2
ENSG00000079739 PGM1 -653197 sc-eQTL 9.42e-01 0.0074 0.102 0.345 gdT L2
ENSG00000088035 ALG6 -427361 sc-eQTL 5.30e-01 0.0684 0.109 0.345 gdT L2
ENSG00000116641 DOCK7 251828 sc-eQTL 4.36e-01 -0.0831 0.106 0.345 gdT L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.96e-01 0.0399 0.102 0.345 gdT L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 5.73e-01 0.061 0.108 0.345 gdT L2
ENSG00000162607 USP1 503917 sc-eQTL 2.05e-01 0.13 0.102 0.345 gdT L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 5.90e-01 -0.0574 0.106 0.345 gdT L2
ENSG00000079739 PGM1 -653197 sc-eQTL 5.75e-01 -0.0521 0.0928 0.347 intMono L2
ENSG00000088035 ALG6 -427361 sc-eQTL 4.53e-01 -0.0649 0.0864 0.347 intMono L2
ENSG00000116641 DOCK7 251828 sc-eQTL 3.54e-01 -0.0819 0.0881 0.347 intMono L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.53e-01 0.0379 0.0843 0.347 intMono L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 8.64e-01 0.016 0.0929 0.347 intMono L2
ENSG00000162607 USP1 503917 sc-eQTL 7.02e-01 0.0362 0.0944 0.347 intMono L2
ENSG00000240563 L1TD1 745365 sc-eQTL 9.92e-01 0.000737 0.0695 0.347 intMono L2
ENSG00000079739 PGM1 -653197 sc-eQTL 1.79e-01 0.113 0.0838 0.353 ncMono L2
ENSG00000088035 ALG6 -427361 sc-eQTL 5.26e-01 -0.0586 0.0924 0.353 ncMono L2
ENSG00000116641 DOCK7 251828 sc-eQTL 6.14e-01 -0.046 0.091 0.353 ncMono L2
ENSG00000125703 ATG4C 156082 sc-eQTL 6.12e-01 -0.0432 0.085 0.353 ncMono L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 4.58e-01 0.066 0.0888 0.353 ncMono L2
ENSG00000162607 USP1 503917 sc-eQTL 6.83e-01 -0.0371 0.0908 0.353 ncMono L2
ENSG00000240563 L1TD1 745365 sc-eQTL 6.97e-01 -0.0251 0.0644 0.353 ncMono L2
ENSG00000079739 PGM1 -653197 sc-eQTL 1.89e-01 -0.132 0.1 0.339 pDC L2
ENSG00000088035 ALG6 -427361 sc-eQTL 8.90e-01 -0.0135 0.0979 0.339 pDC L2
ENSG00000116641 DOCK7 251828 sc-eQTL 4.60e-01 -0.074 0.0999 0.339 pDC L2
ENSG00000125703 ATG4C 156082 sc-eQTL 4.93e-01 -0.0616 0.0896 0.339 pDC L2
ENSG00000142856 ITGB3BP -653507 sc-eQTL 9.54e-01 0.00581 0.101 0.339 pDC L2
ENSG00000162607 USP1 503917 sc-eQTL 9.00e-01 -0.0129 0.103 0.339 pDC L2
ENSG00000203965 EFCAB7 -583158 sc-eQTL 2.52e-02 -0.198 0.0877 0.339 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -653197 sc-eQTL 6.67e-01 0.0366 0.0849 0.344 B_Memory LOneK1K
ENSG00000088035 ALG6 -427361 sc-eQTL 1.51e-01 -0.135 0.0935 0.344 B_Memory LOneK1K
ENSG00000116641 DOCK7 251828 sc-eQTL 2.93e-01 0.0857 0.0813 0.344 B_Memory LOneK1K
ENSG00000125703 ATG4C 156082 sc-eQTL 8.11e-01 -0.0158 0.0659 0.344 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -653507 sc-eQTL 7.57e-01 0.0268 0.0866 0.344 B_Memory LOneK1K
ENSG00000162607 USP1 503917 sc-eQTL 5.52e-01 0.05 0.084 0.344 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -583158 sc-eQTL 2.74e-01 -0.0987 0.09 0.344 B_Memory LOneK1K
ENSG00000079739 PGM1 -653197 sc-eQTL 6.01e-01 -0.0468 0.0894 0.344 B_Naive LOneK1K
ENSG00000088035 ALG6 -427361 sc-eQTL 5.38e-01 0.0567 0.092 0.344 B_Naive LOneK1K
ENSG00000116641 DOCK7 251828 sc-eQTL 5.20e-02 -0.167 0.0852 0.344 B_Naive LOneK1K
ENSG00000125703 ATG4C 156082 sc-eQTL 7.92e-01 0.0173 0.0656 0.344 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -653507 sc-eQTL 8.66e-01 0.0157 0.0928 0.344 B_Naive LOneK1K
ENSG00000162607 USP1 503917 sc-eQTL 2.49e-01 0.0919 0.0795 0.344 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -583158 sc-eQTL 3.22e-01 0.0925 0.0931 0.344 B_Naive LOneK1K
ENSG00000079739 PGM1 -653197 sc-eQTL 1.28e-01 -0.129 0.0844 0.344 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -427361 sc-eQTL 4.82e-01 0.0578 0.0821 0.344 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 251828 sc-eQTL 1.08e-01 -0.133 0.0822 0.344 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 156082 sc-eQTL 2.52e-01 0.0654 0.057 0.344 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.18e-01 0.0845 0.0844 0.344 CD14_Mono LOneK1K
ENSG00000162607 USP1 503917 sc-eQTL 7.09e-01 0.027 0.0723 0.344 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 745365 sc-eQTL 4.13e-01 -0.0641 0.0782 0.344 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -653197 sc-eQTL 2.33e-01 0.0956 0.0799 0.345 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -427361 sc-eQTL 2.14e-01 -0.113 0.0907 0.345 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 251828 sc-eQTL 6.63e-02 -0.165 0.0894 0.345 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 156082 sc-eQTL 8.84e-01 -0.0112 0.0768 0.345 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -653507 sc-eQTL 3.60e-01 0.0816 0.089 0.345 CD16_Mono LOneK1K
ENSG00000162607 USP1 503917 sc-eQTL 7.72e-01 0.0243 0.0838 0.345 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 745365 sc-eQTL 5.71e-01 -0.0324 0.0571 0.345 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -653197 sc-eQTL 2.58e-01 0.0772 0.0681 0.345 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -427361 sc-eQTL 2.28e-01 -0.0989 0.0818 0.345 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 251828 sc-eQTL 6.61e-01 0.0322 0.0735 0.345 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 156082 sc-eQTL 2.18e-01 0.0904 0.0731 0.345 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -653507 sc-eQTL 1.02e-01 -0.142 0.0864 0.345 NK_CD56dim LOneK1K
ENSG00000162607 USP1 503917 sc-eQTL 8.87e-01 -0.0112 0.079 0.345 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -583158 sc-eQTL 5.83e-02 0.181 0.0952 0.345 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -653197 eQTL 0.262 -0.0206 0.0184 0.00121 0.0 0.362
ENSG00000116641 DOCK7 251846 eQTL 0.0332 -0.0484 0.0227 0.0 0.0 0.362
ENSG00000162607 USP1 503917 eQTL 0.0361 -0.0277 0.0132 0.0 0.0 0.362

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina