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Genes within 1Mb (chr1:62939031:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -654380 sc-eQTL 1.98e-01 0.128 0.0992 0.833 B L1
ENSG00000088035 ALG6 -428544 sc-eQTL 2.17e-01 -0.127 0.103 0.833 B L1
ENSG00000116641 DOCK7 250645 sc-eQTL 4.44e-02 -0.207 0.102 0.833 B L1
ENSG00000125703 ATG4C 154899 sc-eQTL 3.80e-01 0.063 0.0716 0.833 B L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.84e-01 0.122 0.114 0.833 B L1
ENSG00000162607 USP1 502734 sc-eQTL 7.79e-01 0.0279 0.099 0.833 B L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 6.37e-01 0.0551 0.117 0.833 B L1
ENSG00000079739 PGM1 -654380 sc-eQTL 4.35e-01 0.0686 0.0877 0.833 CD4T L1
ENSG00000088035 ALG6 -428544 sc-eQTL 1.72e-01 -0.132 0.0965 0.833 CD4T L1
ENSG00000116641 DOCK7 250645 sc-eQTL 3.46e-01 -0.0925 0.0979 0.833 CD4T L1
ENSG00000125703 ATG4C 154899 sc-eQTL 8.58e-01 -0.0142 0.0792 0.833 CD4T L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 7.46e-02 0.2 0.112 0.833 CD4T L1
ENSG00000162607 USP1 502734 sc-eQTL 5.95e-01 -0.0409 0.0768 0.833 CD4T L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.28e-01 -0.122 0.101 0.833 CD4T L1
ENSG00000079739 PGM1 -654380 sc-eQTL 2.44e-01 0.11 0.0943 0.833 CD8T L1
ENSG00000088035 ALG6 -428544 sc-eQTL 9.47e-01 0.007 0.104 0.833 CD8T L1
ENSG00000116641 DOCK7 250645 sc-eQTL 6.48e-01 0.0483 0.106 0.833 CD8T L1
ENSG00000125703 ATG4C 154899 sc-eQTL 6.89e-01 0.0402 0.1 0.833 CD8T L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 6.10e-01 -0.0574 0.112 0.833 CD8T L1
ENSG00000162607 USP1 502734 sc-eQTL 3.84e-01 0.0761 0.0873 0.833 CD8T L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 9.84e-01 0.00227 0.112 0.833 CD8T L1
ENSG00000079739 PGM1 -654380 sc-eQTL 6.54e-01 -0.0479 0.107 0.838 DC L1
ENSG00000088035 ALG6 -428544 sc-eQTL 7.62e-01 -0.0335 0.11 0.838 DC L1
ENSG00000116641 DOCK7 250645 sc-eQTL 3.94e-01 0.0964 0.113 0.838 DC L1
ENSG00000125703 ATG4C 154899 sc-eQTL 6.85e-01 0.036 0.0885 0.838 DC L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 7.65e-01 -0.037 0.124 0.838 DC L1
ENSG00000162607 USP1 502734 sc-eQTL 5.94e-01 0.0577 0.108 0.838 DC L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 5.69e-01 -0.0615 0.108 0.838 DC L1
ENSG00000079739 PGM1 -654380 sc-eQTL 4.19e-01 0.0835 0.103 0.833 Mono L1
ENSG00000088035 ALG6 -428544 sc-eQTL 5.13e-01 -0.0705 0.108 0.833 Mono L1
ENSG00000116641 DOCK7 250645 sc-eQTL 6.86e-01 -0.0421 0.104 0.833 Mono L1
ENSG00000125703 ATG4C 154899 sc-eQTL 1.87e-01 0.0928 0.0701 0.833 Mono L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 5.50e-01 0.0666 0.111 0.833 Mono L1
ENSG00000162607 USP1 502734 sc-eQTL 7.64e-01 0.0274 0.0914 0.833 Mono L1
ENSG00000240563 L1TD1 744182 sc-eQTL 3.87e-01 -0.0739 0.0852 0.833 Mono L1
ENSG00000079739 PGM1 -654380 sc-eQTL 6.44e-01 0.0404 0.0875 0.835 NK L1
ENSG00000088035 ALG6 -428544 sc-eQTL 4.65e-01 0.075 0.103 0.835 NK L1
ENSG00000116641 DOCK7 250645 sc-eQTL 8.56e-01 0.0154 0.0845 0.835 NK L1
ENSG00000125703 ATG4C 154899 sc-eQTL 8.81e-01 0.0136 0.0908 0.835 NK L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 8.04e-01 0.0281 0.113 0.835 NK L1
ENSG00000162607 USP1 502734 sc-eQTL 3.53e-01 -0.0937 0.101 0.835 NK L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.96e-01 0.128 0.122 0.835 NK L1
ENSG00000079739 PGM1 -654380 sc-eQTL 8.56e-01 0.0183 0.1 0.833 Other_T L1
ENSG00000088035 ALG6 -428544 sc-eQTL 9.26e-02 0.169 0.1 0.833 Other_T L1
ENSG00000116641 DOCK7 250645 sc-eQTL 8.23e-01 -0.0231 0.103 0.833 Other_T L1
ENSG00000125703 ATG4C 154899 sc-eQTL 4.68e-01 -0.0648 0.0891 0.833 Other_T L1
ENSG00000142856 ITGB3BP -654690 sc-eQTL 6.36e-01 -0.0375 0.0791 0.833 Other_T L1
ENSG00000162607 USP1 502734 sc-eQTL 6.88e-01 0.0275 0.0685 0.833 Other_T L1
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.22e-01 0.149 0.122 0.833 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -654380 sc-eQTL 9.73e-01 0.00499 0.145 0.847 B_Activated L2
ENSG00000088035 ALG6 -428544 sc-eQTL 5.73e-01 0.0785 0.139 0.847 B_Activated L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.51e-01 -0.186 0.129 0.847 B_Activated L2
ENSG00000125703 ATG4C 154899 sc-eQTL 1.84e-01 0.181 0.135 0.847 B_Activated L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.70e-01 -0.182 0.132 0.847 B_Activated L2
ENSG00000162607 USP1 502734 sc-eQTL 7.51e-01 0.0457 0.144 0.847 B_Activated L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.80e-01 -0.136 0.125 0.847 B_Activated L2
ENSG00000079739 PGM1 -654380 sc-eQTL 1.47e-02 0.297 0.12 0.833 B_Intermediate L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.38e-01 0.184 0.123 0.833 B_Intermediate L2
ENSG00000116641 DOCK7 250645 sc-eQTL 7.00e-01 -0.0458 0.119 0.833 B_Intermediate L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.29e-01 0.0633 0.1 0.833 B_Intermediate L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 8.53e-02 -0.205 0.119 0.833 B_Intermediate L2
ENSG00000162607 USP1 502734 sc-eQTL 6.04e-01 -0.0619 0.119 0.833 B_Intermediate L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.61e-01 0.133 0.118 0.833 B_Intermediate L2
ENSG00000079739 PGM1 -654380 sc-eQTL 2.55e-01 0.135 0.118 0.834 B_Memory L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.27e-01 -0.183 0.12 0.834 B_Memory L2
ENSG00000116641 DOCK7 250645 sc-eQTL 6.32e-02 -0.209 0.112 0.834 B_Memory L2
ENSG00000125703 ATG4C 154899 sc-eQTL 7.49e-01 0.0344 0.107 0.834 B_Memory L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.94e-01 0.159 0.122 0.834 B_Memory L2
ENSG00000162607 USP1 502734 sc-eQTL 4.54e-01 0.0928 0.124 0.834 B_Memory L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 6.94e-01 0.0481 0.122 0.834 B_Memory L2
ENSG00000079739 PGM1 -654380 sc-eQTL 3.31e-01 -0.115 0.118 0.833 B_Naive1 L2
ENSG00000088035 ALG6 -428544 sc-eQTL 7.89e-01 -0.0318 0.119 0.833 B_Naive1 L2
ENSG00000116641 DOCK7 250645 sc-eQTL 5.58e-01 -0.0668 0.114 0.833 B_Naive1 L2
ENSG00000125703 ATG4C 154899 sc-eQTL 7.09e-01 -0.0328 0.0877 0.833 B_Naive1 L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.66e-02 0.277 0.115 0.833 B_Naive1 L2
ENSG00000162607 USP1 502734 sc-eQTL 2.13e-01 -0.127 0.102 0.833 B_Naive1 L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 4.54e-01 0.093 0.124 0.833 B_Naive1 L2
ENSG00000079739 PGM1 -654380 sc-eQTL 3.49e-01 0.11 0.117 0.833 B_Naive2 L2
ENSG00000088035 ALG6 -428544 sc-eQTL 6.53e-03 -0.33 0.12 0.833 B_Naive2 L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.87e-02 -0.275 0.116 0.833 B_Naive2 L2
ENSG00000125703 ATG4C 154899 sc-eQTL 6.69e-01 -0.0483 0.113 0.833 B_Naive2 L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.49e-01 0.141 0.122 0.833 B_Naive2 L2
ENSG00000162607 USP1 502734 sc-eQTL 3.69e-01 0.105 0.116 0.833 B_Naive2 L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.57e-01 -0.138 0.122 0.833 B_Naive2 L2
ENSG00000079739 PGM1 -654380 sc-eQTL 7.13e-01 0.044 0.119 0.839 CD4_CTL L2
ENSG00000088035 ALG6 -428544 sc-eQTL 5.63e-01 0.073 0.126 0.839 CD4_CTL L2
ENSG00000116641 DOCK7 250645 sc-eQTL 4.69e-01 -0.0798 0.11 0.839 CD4_CTL L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.55e-01 -0.0674 0.114 0.839 CD4_CTL L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 4.13e-01 0.1 0.122 0.839 CD4_CTL L2
ENSG00000162607 USP1 502734 sc-eQTL 6.20e-01 0.0577 0.116 0.839 CD4_CTL L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 3.70e-01 -0.104 0.116 0.839 CD4_CTL L2
ENSG00000079739 PGM1 -654380 sc-eQTL 6.51e-01 0.0445 0.0981 0.833 CD4_Naive L2
ENSG00000088035 ALG6 -428544 sc-eQTL 4.33e-01 -0.0836 0.106 0.833 CD4_Naive L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.90e-01 -0.137 0.104 0.833 CD4_Naive L2
ENSG00000125703 ATG4C 154899 sc-eQTL 4.32e-01 0.0728 0.0925 0.833 CD4_Naive L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 5.68e-02 0.215 0.112 0.833 CD4_Naive L2
ENSG00000162607 USP1 502734 sc-eQTL 7.64e-01 -0.026 0.0865 0.833 CD4_Naive L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.73e-01 -0.123 0.112 0.833 CD4_Naive L2
ENSG00000079739 PGM1 -654380 sc-eQTL 8.87e-02 0.17 0.0995 0.833 CD4_TCM L2
ENSG00000088035 ALG6 -428544 sc-eQTL 2.38e-01 -0.137 0.116 0.833 CD4_TCM L2
ENSG00000116641 DOCK7 250645 sc-eQTL 6.89e-01 -0.0414 0.103 0.833 CD4_TCM L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.75e-01 0.0563 0.1 0.833 CD4_TCM L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 6.00e-01 0.062 0.118 0.833 CD4_TCM L2
ENSG00000162607 USP1 502734 sc-eQTL 7.54e-01 -0.0304 0.097 0.833 CD4_TCM L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 7.52e-01 -0.0362 0.114 0.833 CD4_TCM L2
ENSG00000079739 PGM1 -654380 sc-eQTL 6.97e-01 -0.0467 0.12 0.833 CD4_TEM L2
ENSG00000088035 ALG6 -428544 sc-eQTL 7.38e-01 -0.0403 0.12 0.833 CD4_TEM L2
ENSG00000116641 DOCK7 250645 sc-eQTL 5.51e-01 -0.0701 0.117 0.833 CD4_TEM L2
ENSG00000125703 ATG4C 154899 sc-eQTL 2.82e-01 -0.123 0.114 0.833 CD4_TEM L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 8.76e-01 -0.0184 0.118 0.833 CD4_TEM L2
ENSG00000162607 USP1 502734 sc-eQTL 8.81e-01 -0.0167 0.111 0.833 CD4_TEM L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.93e-01 -0.128 0.122 0.833 CD4_TEM L2
ENSG00000079739 PGM1 -654380 sc-eQTL 5.16e-01 0.0697 0.107 0.833 CD8_CTL L2
ENSG00000088035 ALG6 -428544 sc-eQTL 5.73e-01 0.0643 0.114 0.833 CD8_CTL L2
ENSG00000116641 DOCK7 250645 sc-eQTL 9.20e-01 0.0108 0.108 0.833 CD8_CTL L2
ENSG00000125703 ATG4C 154899 sc-eQTL 1.83e-01 0.153 0.115 0.833 CD8_CTL L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 4.80e-01 0.0847 0.12 0.833 CD8_CTL L2
ENSG00000162607 USP1 502734 sc-eQTL 9.47e-01 0.00713 0.107 0.833 CD8_CTL L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 7.59e-01 -0.0376 0.123 0.833 CD8_CTL L2
ENSG00000079739 PGM1 -654380 sc-eQTL 9.15e-02 0.187 0.11 0.833 CD8_Naive L2
ENSG00000088035 ALG6 -428544 sc-eQTL 9.37e-01 -0.00907 0.115 0.833 CD8_Naive L2
ENSG00000116641 DOCK7 250645 sc-eQTL 7.18e-01 -0.0429 0.119 0.833 CD8_Naive L2
ENSG00000125703 ATG4C 154899 sc-eQTL 4.37e-01 -0.0888 0.114 0.833 CD8_Naive L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 9.89e-01 -0.00165 0.116 0.833 CD8_Naive L2
ENSG00000162607 USP1 502734 sc-eQTL 3.35e-01 0.0942 0.0975 0.833 CD8_Naive L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 3.92e-01 0.0934 0.109 0.833 CD8_Naive L2
ENSG00000079739 PGM1 -654380 sc-eQTL 8.42e-01 -0.0248 0.124 0.84 CD8_TCM L2
ENSG00000088035 ALG6 -428544 sc-eQTL 8.38e-02 -0.217 0.125 0.84 CD8_TCM L2
ENSG00000116641 DOCK7 250645 sc-eQTL 8.53e-01 -0.0228 0.123 0.84 CD8_TCM L2
ENSG00000125703 ATG4C 154899 sc-eQTL 1.90e-01 -0.164 0.125 0.84 CD8_TCM L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.95e-01 -0.128 0.122 0.84 CD8_TCM L2
ENSG00000162607 USP1 502734 sc-eQTL 2.94e-01 0.123 0.117 0.84 CD8_TCM L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 3.77e-01 0.11 0.124 0.84 CD8_TCM L2
ENSG00000079739 PGM1 -654380 sc-eQTL 1.92e-02 0.28 0.119 0.822 CD8_TEM L2
ENSG00000088035 ALG6 -428544 sc-eQTL 7.29e-01 0.0419 0.121 0.822 CD8_TEM L2
ENSG00000116641 DOCK7 250645 sc-eQTL 6.93e-01 0.0463 0.117 0.822 CD8_TEM L2
ENSG00000125703 ATG4C 154899 sc-eQTL 4.06e-01 -0.0936 0.112 0.822 CD8_TEM L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 6.68e-01 0.0522 0.122 0.822 CD8_TEM L2
ENSG00000162607 USP1 502734 sc-eQTL 9.66e-01 -0.00502 0.116 0.822 CD8_TEM L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 5.18e-01 0.0764 0.118 0.822 CD8_TEM L2
ENSG00000079739 PGM1 -654380 sc-eQTL 7.90e-01 0.0315 0.118 0.833 MAIT L2
ENSG00000088035 ALG6 -428544 sc-eQTL 2.76e-01 0.128 0.117 0.833 MAIT L2
ENSG00000116641 DOCK7 250645 sc-eQTL 5.32e-01 -0.0702 0.112 0.833 MAIT L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.25e-02 -0.229 0.117 0.833 MAIT L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.95e-01 -0.124 0.118 0.833 MAIT L2
ENSG00000162607 USP1 502734 sc-eQTL 3.49e-01 0.11 0.117 0.833 MAIT L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 2.26e-01 0.148 0.122 0.833 MAIT L2
ENSG00000079739 PGM1 -654380 sc-eQTL 7.37e-01 -0.0387 0.115 0.833 NK_CD56bright L2
ENSG00000088035 ALG6 -428544 sc-eQTL 5.51e-01 0.0703 0.118 0.833 NK_CD56bright L2
ENSG00000116641 DOCK7 250645 sc-eQTL 8.25e-01 -0.0226 0.102 0.833 NK_CD56bright L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.61e-01 0.0665 0.114 0.833 NK_CD56bright L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.51e-01 -0.17 0.118 0.833 NK_CD56bright L2
ENSG00000162607 USP1 502734 sc-eQTL 7.61e-01 -0.0373 0.123 0.833 NK_CD56bright L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 4.82e-01 0.0824 0.117 0.833 NK_CD56bright L2
ENSG00000079739 PGM1 -654380 sc-eQTL 2.20e-01 -0.113 0.0916 0.834 NK_CD56dim L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.71e-01 0.159 0.116 0.834 NK_CD56dim L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.72e-01 0.139 0.101 0.834 NK_CD56dim L2
ENSG00000125703 ATG4C 154899 sc-eQTL 4.40e-01 -0.0796 0.103 0.834 NK_CD56dim L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 7.51e-01 0.0373 0.117 0.834 NK_CD56dim L2
ENSG00000162607 USP1 502734 sc-eQTL 7.26e-02 -0.204 0.113 0.834 NK_CD56dim L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 7.58e-01 0.0391 0.127 0.834 NK_CD56dim L2
ENSG00000079739 PGM1 -654380 sc-eQTL 2.99e-01 0.128 0.123 0.833 NK_HLA L2
ENSG00000088035 ALG6 -428544 sc-eQTL 5.52e-01 0.0764 0.128 0.833 NK_HLA L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.29e-01 -0.148 0.0975 0.833 NK_HLA L2
ENSG00000125703 ATG4C 154899 sc-eQTL 9.38e-01 0.00884 0.114 0.833 NK_HLA L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 5.30e-01 0.0753 0.12 0.833 NK_HLA L2
ENSG00000162607 USP1 502734 sc-eQTL 9.65e-01 0.00545 0.125 0.833 NK_HLA L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 9.40e-01 0.00866 0.114 0.833 NK_HLA L2
ENSG00000079739 PGM1 -654380 sc-eQTL 3.55e-01 0.0925 0.0999 0.834 NK_cytokine L2
ENSG00000088035 ALG6 -428544 sc-eQTL 8.33e-01 -0.0238 0.113 0.834 NK_cytokine L2
ENSG00000116641 DOCK7 250645 sc-eQTL 5.52e-01 -0.0623 0.105 0.834 NK_cytokine L2
ENSG00000125703 ATG4C 154899 sc-eQTL 8.02e-01 0.027 0.107 0.834 NK_cytokine L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 9.47e-01 0.00734 0.111 0.834 NK_cytokine L2
ENSG00000162607 USP1 502734 sc-eQTL 8.44e-01 -0.0229 0.117 0.834 NK_cytokine L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 3.96e-01 0.1 0.118 0.834 NK_cytokine L2
ENSG00000079739 PGM1 -654380 sc-eQTL 7.45e-02 0.267 0.148 0.844 PB L2
ENSG00000088035 ALG6 -428544 sc-eQTL 7.18e-01 0.0572 0.158 0.844 PB L2
ENSG00000116641 DOCK7 250645 sc-eQTL 2.96e-01 0.177 0.168 0.844 PB L2
ENSG00000125703 ATG4C 154899 sc-eQTL 6.53e-01 0.0663 0.147 0.844 PB L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.72e-01 -0.2 0.146 0.844 PB L2
ENSG00000162607 USP1 502734 sc-eQTL 7.80e-01 -0.041 0.146 0.844 PB L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 7.23e-01 0.0573 0.161 0.844 PB L2
ENSG00000079739 PGM1 -654380 sc-eQTL 7.65e-01 0.0325 0.108 0.833 Pro_T L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.85e-01 0.146 0.11 0.833 Pro_T L2
ENSG00000116641 DOCK7 250645 sc-eQTL 8.66e-01 0.0187 0.111 0.833 Pro_T L2
ENSG00000125703 ATG4C 154899 sc-eQTL 3.74e-01 0.0861 0.0966 0.833 Pro_T L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.82e-01 0.104 0.0968 0.833 Pro_T L2
ENSG00000162607 USP1 502734 sc-eQTL 3.08e-01 -0.0681 0.0666 0.833 Pro_T L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 5.29e-01 -0.0711 0.113 0.833 Pro_T L2
ENSG00000079739 PGM1 -654380 sc-eQTL 9.11e-01 -0.0129 0.115 0.833 Treg L2
ENSG00000088035 ALG6 -428544 sc-eQTL 9.31e-02 -0.207 0.122 0.833 Treg L2
ENSG00000116641 DOCK7 250645 sc-eQTL 2.53e-01 0.129 0.113 0.833 Treg L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.76e-01 0.0646 0.116 0.833 Treg L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 3.32e-01 0.117 0.121 0.833 Treg L2
ENSG00000162607 USP1 502734 sc-eQTL 2.11e-01 0.146 0.117 0.833 Treg L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 4.78e-01 -0.0821 0.116 0.833 Treg L2
ENSG00000079739 PGM1 -654380 sc-eQTL 3.20e-01 -0.119 0.119 0.839 cDC L2
ENSG00000088035 ALG6 -428544 sc-eQTL 4.62e-01 -0.0893 0.121 0.839 cDC L2
ENSG00000116641 DOCK7 250645 sc-eQTL 9.75e-01 -0.00366 0.119 0.839 cDC L2
ENSG00000125703 ATG4C 154899 sc-eQTL 8.99e-01 -0.0132 0.103 0.839 cDC L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 8.11e-01 -0.0314 0.131 0.839 cDC L2
ENSG00000162607 USP1 502734 sc-eQTL 8.96e-01 0.0153 0.117 0.839 cDC L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 1.67e-01 -0.146 0.105 0.839 cDC L2
ENSG00000079739 PGM1 -654380 sc-eQTL 2.72e-01 0.118 0.107 0.833 cMono_IL1B L2
ENSG00000088035 ALG6 -428544 sc-eQTL 9.23e-01 0.0104 0.108 0.833 cMono_IL1B L2
ENSG00000116641 DOCK7 250645 sc-eQTL 1.56e-01 -0.161 0.113 0.833 cMono_IL1B L2
ENSG00000125703 ATG4C 154899 sc-eQTL 5.86e-01 0.0434 0.0797 0.833 cMono_IL1B L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 8.13e-01 0.0268 0.113 0.833 cMono_IL1B L2
ENSG00000162607 USP1 502734 sc-eQTL 7.46e-01 0.0323 0.0996 0.833 cMono_IL1B L2
ENSG00000240563 L1TD1 744182 sc-eQTL 7.40e-01 -0.0333 0.1 0.833 cMono_IL1B L2
ENSG00000079739 PGM1 -654380 sc-eQTL 6.74e-01 0.0505 0.12 0.833 cMono_S100A L2
ENSG00000088035 ALG6 -428544 sc-eQTL 9.78e-02 -0.201 0.121 0.833 cMono_S100A L2
ENSG00000116641 DOCK7 250645 sc-eQTL 2.25e-01 0.137 0.112 0.833 cMono_S100A L2
ENSG00000125703 ATG4C 154899 sc-eQTL 4.04e-01 0.0815 0.0975 0.833 cMono_S100A L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 6.31e-01 0.053 0.11 0.833 cMono_S100A L2
ENSG00000162607 USP1 502734 sc-eQTL 7.73e-01 0.0327 0.113 0.833 cMono_S100A L2
ENSG00000240563 L1TD1 744182 sc-eQTL 8.84e-02 -0.16 0.0937 0.833 cMono_S100A L2
ENSG00000079739 PGM1 -654380 sc-eQTL 3.87e-01 0.112 0.13 0.83 gdT L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.30e-01 -0.209 0.137 0.83 gdT L2
ENSG00000116641 DOCK7 250645 sc-eQTL 4.54e-01 0.102 0.136 0.83 gdT L2
ENSG00000125703 ATG4C 154899 sc-eQTL 7.77e-01 -0.0368 0.13 0.83 gdT L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.82e-01 0.184 0.137 0.83 gdT L2
ENSG00000162607 USP1 502734 sc-eQTL 2.07e-02 0.299 0.128 0.83 gdT L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 1.69e-01 -0.186 0.135 0.83 gdT L2
ENSG00000079739 PGM1 -654380 sc-eQTL 4.07e-01 0.0999 0.12 0.836 intMono L2
ENSG00000088035 ALG6 -428544 sc-eQTL 4.21e-01 -0.0905 0.112 0.836 intMono L2
ENSG00000116641 DOCK7 250645 sc-eQTL 5.09e-01 0.0758 0.115 0.836 intMono L2
ENSG00000125703 ATG4C 154899 sc-eQTL 3.40e-01 0.104 0.109 0.836 intMono L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 1.17e-01 -0.189 0.12 0.836 intMono L2
ENSG00000162607 USP1 502734 sc-eQTL 3.20e-01 -0.122 0.122 0.836 intMono L2
ENSG00000240563 L1TD1 744182 sc-eQTL 8.28e-01 0.0196 0.0902 0.836 intMono L2
ENSG00000079739 PGM1 -654380 sc-eQTL 2.44e-01 0.124 0.107 0.83 ncMono L2
ENSG00000088035 ALG6 -428544 sc-eQTL 1.40e-01 0.173 0.117 0.83 ncMono L2
ENSG00000116641 DOCK7 250645 sc-eQTL 8.17e-01 -0.0268 0.116 0.83 ncMono L2
ENSG00000125703 ATG4C 154899 sc-eQTL 7.26e-01 -0.0379 0.108 0.83 ncMono L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 4.35e-01 0.0882 0.113 0.83 ncMono L2
ENSG00000162607 USP1 502734 sc-eQTL 2.41e-02 -0.259 0.114 0.83 ncMono L2
ENSG00000240563 L1TD1 744182 sc-eQTL 8.79e-01 -0.0125 0.0819 0.83 ncMono L2
ENSG00000079739 PGM1 -654380 sc-eQTL 5.86e-01 -0.0745 0.136 0.833 pDC L2
ENSG00000088035 ALG6 -428544 sc-eQTL 4.82e-01 -0.0935 0.133 0.833 pDC L2
ENSG00000116641 DOCK7 250645 sc-eQTL 6.60e-01 0.0598 0.136 0.833 pDC L2
ENSG00000125703 ATG4C 154899 sc-eQTL 9.05e-01 0.0145 0.122 0.833 pDC L2
ENSG00000142856 ITGB3BP -654690 sc-eQTL 3.99e-01 0.115 0.136 0.833 pDC L2
ENSG00000162607 USP1 502734 sc-eQTL 8.89e-01 0.0195 0.139 0.833 pDC L2
ENSG00000203965 EFCAB7 -584341 sc-eQTL 6.29e-01 -0.0585 0.121 0.833 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -654380 sc-eQTL 1.83e-02 0.264 0.111 0.833 B_Memory LOneK1K
ENSG00000088035 ALG6 -428544 sc-eQTL 9.46e-01 -0.00839 0.124 0.833 B_Memory LOneK1K
ENSG00000116641 DOCK7 250645 sc-eQTL 1.68e-01 -0.149 0.108 0.833 B_Memory LOneK1K
ENSG00000125703 ATG4C 154899 sc-eQTL 3.30e-01 0.085 0.0871 0.833 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -654690 sc-eQTL 5.94e-01 -0.0612 0.115 0.833 B_Memory LOneK1K
ENSG00000162607 USP1 502734 sc-eQTL 2.17e-01 0.137 0.111 0.833 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -584341 sc-eQTL 8.23e-01 0.0267 0.12 0.833 B_Memory LOneK1K
ENSG00000079739 PGM1 -654380 sc-eQTL 9.01e-01 -0.0145 0.116 0.833 B_Naive LOneK1K
ENSG00000088035 ALG6 -428544 sc-eQTL 7.40e-02 -0.212 0.118 0.833 B_Naive LOneK1K
ENSG00000116641 DOCK7 250645 sc-eQTL 3.56e-02 -0.233 0.11 0.833 B_Naive LOneK1K
ENSG00000125703 ATG4C 154899 sc-eQTL 7.74e-01 -0.0244 0.0849 0.833 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -654690 sc-eQTL 2.68e-02 0.264 0.119 0.833 B_Naive LOneK1K
ENSG00000162607 USP1 502734 sc-eQTL 5.38e-01 -0.0635 0.103 0.833 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -584341 sc-eQTL 8.90e-01 -0.0167 0.121 0.833 B_Naive LOneK1K
ENSG00000079739 PGM1 -654380 sc-eQTL 4.81e-01 0.0772 0.109 0.833 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -428544 sc-eQTL 5.30e-01 -0.0667 0.106 0.833 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 250645 sc-eQTL 7.91e-01 -0.0284 0.107 0.833 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 154899 sc-eQTL 1.97e-01 0.0951 0.0735 0.833 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -654690 sc-eQTL 5.47e-01 0.0658 0.109 0.833 CD14_Mono LOneK1K
ENSG00000162607 USP1 502734 sc-eQTL 3.56e-01 0.0862 0.0931 0.833 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 744182 sc-eQTL 4.17e-01 -0.0821 0.101 0.833 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -654380 sc-eQTL 3.46e-01 0.0988 0.105 0.836 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -428544 sc-eQTL 6.87e-01 0.0481 0.119 0.836 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 250645 sc-eQTL 8.70e-01 0.0193 0.118 0.836 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 154899 sc-eQTL 7.82e-01 -0.0279 0.1 0.836 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -654690 sc-eQTL 4.91e-01 -0.0803 0.116 0.836 CD16_Mono LOneK1K
ENSG00000162607 USP1 502734 sc-eQTL 2.24e-01 -0.133 0.109 0.836 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 744182 sc-eQTL 7.83e-01 0.0206 0.0747 0.836 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -654380 sc-eQTL 6.47e-01 0.0412 0.0897 0.834 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -428544 sc-eQTL 3.93e-01 0.092 0.108 0.834 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 250645 sc-eQTL 8.46e-01 0.0188 0.0965 0.834 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 154899 sc-eQTL 8.73e-01 -0.0154 0.0963 0.834 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -654690 sc-eQTL 7.85e-01 0.0312 0.114 0.834 NK_CD56dim LOneK1K
ENSG00000162607 USP1 502734 sc-eQTL 2.16e-01 -0.128 0.103 0.834 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -584341 sc-eQTL 4.58e-01 0.0936 0.126 0.834 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -654380 eQTL 0.592 -0.0118 0.022 0.00563 0.0 0.202

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina