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Genes within 1Mb (chr1:62937503:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -655908 sc-eQTL 7.67e-01 -0.0319 0.107 0.865 B L1
ENSG00000088035 ALG6 -430072 sc-eQTL 5.86e-01 -0.0606 0.111 0.865 B L1
ENSG00000116641 DOCK7 249117 sc-eQTL 9.31e-02 -0.187 0.111 0.865 B L1
ENSG00000125703 ATG4C 153371 sc-eQTL 9.38e-01 0.00599 0.0774 0.865 B L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 9.10e-01 0.014 0.123 0.865 B L1
ENSG00000162607 USP1 501206 sc-eQTL 8.20e-01 -0.0244 0.107 0.865 B L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 6.93e-01 -0.0499 0.126 0.865 B L1
ENSG00000079739 PGM1 -655908 sc-eQTL 6.37e-01 0.0443 0.0937 0.865 CD4T L1
ENSG00000088035 ALG6 -430072 sc-eQTL 3.72e-01 -0.0924 0.103 0.865 CD4T L1
ENSG00000116641 DOCK7 249117 sc-eQTL 5.02e-01 -0.0704 0.105 0.865 CD4T L1
ENSG00000125703 ATG4C 153371 sc-eQTL 6.47e-01 0.0388 0.0845 0.865 CD4T L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.45e-01 0.0554 0.12 0.865 CD4T L1
ENSG00000162607 USP1 501206 sc-eQTL 6.83e-01 -0.0336 0.082 0.865 CD4T L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 6.82e-02 -0.196 0.107 0.865 CD4T L1
ENSG00000079739 PGM1 -655908 sc-eQTL 6.33e-01 0.0492 0.103 0.865 CD8T L1
ENSG00000088035 ALG6 -430072 sc-eQTL 7.27e-01 -0.0396 0.113 0.865 CD8T L1
ENSG00000116641 DOCK7 249117 sc-eQTL 2.76e-01 0.125 0.115 0.865 CD8T L1
ENSG00000125703 ATG4C 153371 sc-eQTL 2.78e-01 0.118 0.109 0.865 CD8T L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 2.97e-01 -0.127 0.122 0.865 CD8T L1
ENSG00000162607 USP1 501206 sc-eQTL 5.09e-01 0.0628 0.095 0.865 CD8T L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 8.01e-01 0.0307 0.122 0.865 CD8T L1
ENSG00000079739 PGM1 -655908 sc-eQTL 7.60e-01 -0.0359 0.117 0.867 DC L1
ENSG00000088035 ALG6 -430072 sc-eQTL 6.30e-01 -0.0585 0.121 0.867 DC L1
ENSG00000116641 DOCK7 249117 sc-eQTL 1.71e-01 0.17 0.124 0.867 DC L1
ENSG00000125703 ATG4C 153371 sc-eQTL 7.26e-01 0.0341 0.0971 0.867 DC L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.75e-01 0.057 0.136 0.867 DC L1
ENSG00000162607 USP1 501206 sc-eQTL 6.15e-01 0.0596 0.118 0.867 DC L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 4.37e-01 -0.092 0.118 0.867 DC L1
ENSG00000079739 PGM1 -655908 sc-eQTL 6.03e-01 0.0581 0.112 0.865 Mono L1
ENSG00000088035 ALG6 -430072 sc-eQTL 9.48e-01 -0.00761 0.117 0.865 Mono L1
ENSG00000116641 DOCK7 249117 sc-eQTL 6.99e-01 -0.0437 0.113 0.865 Mono L1
ENSG00000125703 ATG4C 153371 sc-eQTL 2.42e-01 0.0891 0.0759 0.865 Mono L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 8.76e-01 -0.0188 0.12 0.865 Mono L1
ENSG00000162607 USP1 501206 sc-eQTL 8.62e-01 0.0171 0.0988 0.865 Mono L1
ENSG00000240563 L1TD1 742654 sc-eQTL 3.60e-01 -0.0844 0.0921 0.865 Mono L1
ENSG00000079739 PGM1 -655908 sc-eQTL 4.91e-01 0.0652 0.0945 0.867 NK L1
ENSG00000088035 ALG6 -430072 sc-eQTL 1.04e-01 0.18 0.11 0.867 NK L1
ENSG00000116641 DOCK7 249117 sc-eQTL 5.85e-01 0.05 0.0913 0.867 NK L1
ENSG00000125703 ATG4C 153371 sc-eQTL 9.49e-01 -0.00629 0.0981 0.867 NK L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.01e-01 -0.0638 0.122 0.867 NK L1
ENSG00000162607 USP1 501206 sc-eQTL 3.71e-01 -0.0975 0.109 0.867 NK L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 2.12e-01 0.165 0.132 0.867 NK L1
ENSG00000079739 PGM1 -655908 sc-eQTL 7.38e-01 0.0364 0.109 0.865 Other_T L1
ENSG00000088035 ALG6 -430072 sc-eQTL 1.57e-01 0.154 0.109 0.865 Other_T L1
ENSG00000116641 DOCK7 249117 sc-eQTL 9.37e-01 0.00875 0.111 0.865 Other_T L1
ENSG00000125703 ATG4C 153371 sc-eQTL 9.02e-01 0.0119 0.0964 0.865 Other_T L1
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.89e-01 -0.0343 0.0854 0.865 Other_T L1
ENSG00000162607 USP1 501206 sc-eQTL 9.77e-01 0.00214 0.0741 0.865 Other_T L1
ENSG00000203965 EFCAB7 -585869 sc-eQTL 5.03e-01 0.0884 0.132 0.865 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -655908 sc-eQTL 4.87e-01 -0.113 0.162 0.883 B_Activated L2
ENSG00000088035 ALG6 -430072 sc-eQTL 9.88e-01 0.00232 0.156 0.883 B_Activated L2
ENSG00000116641 DOCK7 249117 sc-eQTL 3.93e-01 -0.124 0.145 0.883 B_Activated L2
ENSG00000125703 ATG4C 153371 sc-eQTL 1.08e-01 0.244 0.151 0.883 B_Activated L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 7.88e-01 -0.04 0.149 0.883 B_Activated L2
ENSG00000162607 USP1 501206 sc-eQTL 5.01e-01 0.109 0.161 0.883 B_Activated L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 4.36e-01 -0.11 0.141 0.883 B_Activated L2
ENSG00000079739 PGM1 -655908 sc-eQTL 2.14e-01 0.162 0.13 0.865 B_Intermediate L2
ENSG00000088035 ALG6 -430072 sc-eQTL 1.36e-01 0.198 0.132 0.865 B_Intermediate L2
ENSG00000116641 DOCK7 249117 sc-eQTL 7.30e-01 -0.0438 0.127 0.865 B_Intermediate L2
ENSG00000125703 ATG4C 153371 sc-eQTL 5.26e-01 0.0681 0.107 0.865 B_Intermediate L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 9.30e-02 -0.215 0.127 0.865 B_Intermediate L2
ENSG00000162607 USP1 501206 sc-eQTL 7.09e-01 -0.0477 0.128 0.865 B_Intermediate L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.05e-01 0.13 0.127 0.865 B_Intermediate L2
ENSG00000079739 PGM1 -655908 sc-eQTL 8.77e-01 0.02 0.128 0.866 B_Memory L2
ENSG00000088035 ALG6 -430072 sc-eQTL 1.96e-01 -0.168 0.13 0.866 B_Memory L2
ENSG00000116641 DOCK7 249117 sc-eQTL 1.86e-01 -0.162 0.122 0.866 B_Memory L2
ENSG00000125703 ATG4C 153371 sc-eQTL 6.82e-01 -0.0477 0.116 0.866 B_Memory L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 8.81e-01 0.0199 0.133 0.866 B_Memory L2
ENSG00000162607 USP1 501206 sc-eQTL 5.44e-01 0.0814 0.134 0.866 B_Memory L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 9.42e-01 0.00963 0.132 0.866 B_Memory L2
ENSG00000079739 PGM1 -655908 sc-eQTL 1.06e-01 -0.206 0.127 0.865 B_Naive1 L2
ENSG00000088035 ALG6 -430072 sc-eQTL 6.49e-01 -0.0583 0.128 0.865 B_Naive1 L2
ENSG00000116641 DOCK7 249117 sc-eQTL 6.64e-01 -0.0535 0.123 0.865 B_Naive1 L2
ENSG00000125703 ATG4C 153371 sc-eQTL 4.55e-01 -0.0707 0.0944 0.865 B_Naive1 L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.56e-02 0.23 0.124 0.865 B_Naive1 L2
ENSG00000162607 USP1 501206 sc-eQTL 1.90e-01 -0.144 0.11 0.865 B_Naive1 L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 9.26e-01 -0.0125 0.134 0.865 B_Naive1 L2
ENSG00000079739 PGM1 -655908 sc-eQTL 5.16e-01 -0.0824 0.127 0.865 B_Naive2 L2
ENSG00000088035 ALG6 -430072 sc-eQTL 1.60e-01 -0.185 0.131 0.865 B_Naive2 L2
ENSG00000116641 DOCK7 249117 sc-eQTL 7.65e-03 -0.336 0.125 0.865 B_Naive2 L2
ENSG00000125703 ATG4C 153371 sc-eQTL 7.52e-01 -0.0386 0.122 0.865 B_Naive2 L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 9.18e-01 -0.0136 0.133 0.865 B_Naive2 L2
ENSG00000162607 USP1 501206 sc-eQTL 3.32e-01 0.122 0.126 0.865 B_Naive2 L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 1.81e-01 -0.176 0.131 0.865 B_Naive2 L2
ENSG00000079739 PGM1 -655908 sc-eQTL 8.00e-01 0.0325 0.128 0.866 CD4_CTL L2
ENSG00000088035 ALG6 -430072 sc-eQTL 3.49e-01 0.127 0.135 0.866 CD4_CTL L2
ENSG00000116641 DOCK7 249117 sc-eQTL 7.39e-01 -0.0394 0.118 0.866 CD4_CTL L2
ENSG00000125703 ATG4C 153371 sc-eQTL 9.97e-01 -0.000422 0.122 0.866 CD4_CTL L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.76e-01 0.0933 0.131 0.866 CD4_CTL L2
ENSG00000162607 USP1 501206 sc-eQTL 4.15e-01 0.102 0.124 0.866 CD4_CTL L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.37e-01 -0.119 0.124 0.866 CD4_CTL L2
ENSG00000079739 PGM1 -655908 sc-eQTL 3.93e-01 0.0897 0.105 0.865 CD4_Naive L2
ENSG00000088035 ALG6 -430072 sc-eQTL 5.18e-01 -0.0738 0.114 0.865 CD4_Naive L2
ENSG00000116641 DOCK7 249117 sc-eQTL 4.96e-01 -0.0764 0.112 0.865 CD4_Naive L2
ENSG00000125703 ATG4C 153371 sc-eQTL 2.75e-01 0.108 0.0989 0.865 CD4_Naive L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.10e-01 0.0999 0.121 0.865 CD4_Naive L2
ENSG00000162607 USP1 501206 sc-eQTL 5.53e-01 -0.0549 0.0925 0.865 CD4_Naive L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 1.97e-01 -0.155 0.12 0.865 CD4_Naive L2
ENSG00000079739 PGM1 -655908 sc-eQTL 5.77e-01 0.0605 0.108 0.865 CD4_TCM L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.09e-01 -0.104 0.126 0.865 CD4_TCM L2
ENSG00000116641 DOCK7 249117 sc-eQTL 6.86e-01 -0.0452 0.111 0.865 CD4_TCM L2
ENSG00000125703 ATG4C 153371 sc-eQTL 4.71e-01 0.0783 0.108 0.865 CD4_TCM L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 7.39e-01 -0.0427 0.128 0.865 CD4_TCM L2
ENSG00000162607 USP1 501206 sc-eQTL 1.00e+00 -6.27e-05 0.105 0.865 CD4_TCM L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 4.07e-01 -0.103 0.124 0.865 CD4_TCM L2
ENSG00000079739 PGM1 -655908 sc-eQTL 5.61e-02 -0.247 0.129 0.865 CD4_TEM L2
ENSG00000088035 ALG6 -430072 sc-eQTL 5.47e-01 -0.0786 0.13 0.865 CD4_TEM L2
ENSG00000116641 DOCK7 249117 sc-eQTL 6.21e-01 -0.063 0.127 0.865 CD4_TEM L2
ENSG00000125703 ATG4C 153371 sc-eQTL 7.09e-01 -0.0462 0.124 0.865 CD4_TEM L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.24e-01 -0.102 0.127 0.865 CD4_TEM L2
ENSG00000162607 USP1 501206 sc-eQTL 5.04e-01 -0.0808 0.121 0.865 CD4_TEM L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 9.92e-02 -0.217 0.131 0.865 CD4_TEM L2
ENSG00000079739 PGM1 -655908 sc-eQTL 9.55e-01 -0.00657 0.116 0.865 CD8_CTL L2
ENSG00000088035 ALG6 -430072 sc-eQTL 6.52e-01 0.0558 0.123 0.865 CD8_CTL L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.19e-01 -0.0269 0.117 0.865 CD8_CTL L2
ENSG00000125703 ATG4C 153371 sc-eQTL 1.79e-01 0.168 0.124 0.865 CD8_CTL L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 8.05e-01 0.032 0.13 0.865 CD8_CTL L2
ENSG00000162607 USP1 501206 sc-eQTL 9.19e-01 0.0119 0.116 0.865 CD8_CTL L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 9.52e-01 0.00801 0.133 0.865 CD8_CTL L2
ENSG00000079739 PGM1 -655908 sc-eQTL 1.28e-01 0.183 0.12 0.865 CD8_Naive L2
ENSG00000088035 ALG6 -430072 sc-eQTL 6.28e-01 -0.0604 0.125 0.865 CD8_Naive L2
ENSG00000116641 DOCK7 249117 sc-eQTL 7.20e-01 -0.0462 0.129 0.865 CD8_Naive L2
ENSG00000125703 ATG4C 153371 sc-eQTL 8.51e-01 0.0233 0.124 0.865 CD8_Naive L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.24e-01 -0.0615 0.125 0.865 CD8_Naive L2
ENSG00000162607 USP1 501206 sc-eQTL 3.97e-01 0.0897 0.106 0.865 CD8_Naive L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 7.37e-01 0.0396 0.118 0.865 CD8_Naive L2
ENSG00000079739 PGM1 -655908 sc-eQTL 9.26e-01 -0.0126 0.136 0.87 CD8_TCM L2
ENSG00000088035 ALG6 -430072 sc-eQTL 3.14e-01 -0.139 0.137 0.87 CD8_TCM L2
ENSG00000116641 DOCK7 249117 sc-eQTL 4.32e-01 -0.106 0.134 0.87 CD8_TCM L2
ENSG00000125703 ATG4C 153371 sc-eQTL 5.71e-01 -0.0781 0.137 0.87 CD8_TCM L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.17e-01 -0.108 0.133 0.87 CD8_TCM L2
ENSG00000162607 USP1 501206 sc-eQTL 5.31e-01 0.0806 0.128 0.87 CD8_TCM L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 2.45e-01 0.158 0.136 0.87 CD8_TCM L2
ENSG00000079739 PGM1 -655908 sc-eQTL 1.84e-02 0.302 0.127 0.856 CD8_TEM L2
ENSG00000088035 ALG6 -430072 sc-eQTL 9.97e-01 0.000413 0.129 0.856 CD8_TEM L2
ENSG00000116641 DOCK7 249117 sc-eQTL 1.14e-01 0.198 0.125 0.856 CD8_TEM L2
ENSG00000125703 ATG4C 153371 sc-eQTL 4.09e-01 -0.0996 0.12 0.856 CD8_TEM L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 7.81e-01 0.0363 0.13 0.856 CD8_TEM L2
ENSG00000162607 USP1 501206 sc-eQTL 8.92e-01 -0.0169 0.125 0.856 CD8_TEM L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 8.09e-01 0.0306 0.127 0.856 CD8_TEM L2
ENSG00000079739 PGM1 -655908 sc-eQTL 8.17e-01 0.0293 0.127 0.864 MAIT L2
ENSG00000088035 ALG6 -430072 sc-eQTL 3.51e-01 0.117 0.125 0.864 MAIT L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.12e-01 0.0286 0.12 0.864 MAIT L2
ENSG00000125703 ATG4C 153371 sc-eQTL 4.49e-01 -0.0959 0.127 0.864 MAIT L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.77e-01 -0.0903 0.127 0.864 MAIT L2
ENSG00000162607 USP1 501206 sc-eQTL 8.81e-01 -0.0188 0.126 0.864 MAIT L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 4.35e-01 0.102 0.131 0.864 MAIT L2
ENSG00000079739 PGM1 -655908 sc-eQTL 4.55e-01 -0.0935 0.125 0.867 NK_CD56bright L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.07e-01 0.106 0.128 0.867 NK_CD56bright L2
ENSG00000116641 DOCK7 249117 sc-eQTL 4.32e-01 -0.0873 0.111 0.867 NK_CD56bright L2
ENSG00000125703 ATG4C 153371 sc-eQTL 7.12e-01 -0.0458 0.124 0.867 NK_CD56bright L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.31e-01 -0.062 0.129 0.867 NK_CD56bright L2
ENSG00000162607 USP1 501206 sc-eQTL 9.70e-01 -0.00494 0.133 0.867 NK_CD56bright L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.76e-01 0.113 0.127 0.867 NK_CD56bright L2
ENSG00000079739 PGM1 -655908 sc-eQTL 6.45e-01 -0.0456 0.0988 0.866 NK_CD56dim L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.07e-02 0.256 0.124 0.866 NK_CD56dim L2
ENSG00000116641 DOCK7 249117 sc-eQTL 9.03e-02 0.184 0.108 0.866 NK_CD56dim L2
ENSG00000125703 ATG4C 153371 sc-eQTL 6.70e-01 -0.0474 0.111 0.866 NK_CD56dim L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 7.72e-01 -0.0365 0.126 0.866 NK_CD56dim L2
ENSG00000162607 USP1 501206 sc-eQTL 1.37e-01 -0.182 0.122 0.866 NK_CD56dim L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 5.63e-01 0.079 0.136 0.866 NK_CD56dim L2
ENSG00000079739 PGM1 -655908 sc-eQTL 4.44e-01 0.103 0.134 0.868 NK_HLA L2
ENSG00000088035 ALG6 -430072 sc-eQTL 7.68e-01 0.041 0.139 0.868 NK_HLA L2
ENSG00000116641 DOCK7 249117 sc-eQTL 2.26e-01 -0.128 0.106 0.868 NK_HLA L2
ENSG00000125703 ATG4C 153371 sc-eQTL 8.81e-01 0.0185 0.123 0.868 NK_HLA L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.99e-01 0.0501 0.129 0.868 NK_HLA L2
ENSG00000162607 USP1 501206 sc-eQTL 4.39e-01 -0.105 0.135 0.868 NK_HLA L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.85e-01 0.107 0.123 0.868 NK_HLA L2
ENSG00000079739 PGM1 -655908 sc-eQTL 2.45e-01 0.125 0.107 0.866 NK_cytokine L2
ENSG00000088035 ALG6 -430072 sc-eQTL 8.16e-01 0.0283 0.122 0.866 NK_cytokine L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.41e-01 -0.0226 0.113 0.866 NK_cytokine L2
ENSG00000125703 ATG4C 153371 sc-eQTL 9.35e-01 -0.00942 0.115 0.866 NK_cytokine L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 3.86e-01 -0.104 0.119 0.866 NK_cytokine L2
ENSG00000162607 USP1 501206 sc-eQTL 9.72e-01 0.00436 0.126 0.866 NK_cytokine L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 1.78e-01 0.171 0.127 0.866 NK_cytokine L2
ENSG00000079739 PGM1 -655908 sc-eQTL 6.34e-02 0.3 0.16 0.881 PB L2
ENSG00000088035 ALG6 -430072 sc-eQTL 6.37e-01 0.0808 0.171 0.881 PB L2
ENSG00000116641 DOCK7 249117 sc-eQTL 1.93e-01 0.238 0.181 0.881 PB L2
ENSG00000125703 ATG4C 153371 sc-eQTL 7.64e-01 -0.0479 0.159 0.881 PB L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.14e-02 -0.322 0.156 0.881 PB L2
ENSG00000162607 USP1 501206 sc-eQTL 4.76e-01 -0.113 0.158 0.881 PB L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 8.27e-01 0.0382 0.174 0.881 PB L2
ENSG00000079739 PGM1 -655908 sc-eQTL 9.57e-01 0.00635 0.117 0.865 Pro_T L2
ENSG00000088035 ALG6 -430072 sc-eQTL 2.29e-01 0.144 0.119 0.865 Pro_T L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.96e-01 -0.0157 0.12 0.865 Pro_T L2
ENSG00000125703 ATG4C 153371 sc-eQTL 1.34e-01 0.157 0.104 0.865 Pro_T L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 1.43e-01 0.154 0.105 0.865 Pro_T L2
ENSG00000162607 USP1 501206 sc-eQTL 4.01e-01 -0.0608 0.0722 0.865 Pro_T L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.04e-01 -0.126 0.122 0.865 Pro_T L2
ENSG00000079739 PGM1 -655908 sc-eQTL 2.42e-01 -0.147 0.125 0.865 Treg L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.89e-01 -0.093 0.134 0.865 Treg L2
ENSG00000116641 DOCK7 249117 sc-eQTL 6.92e-01 0.0489 0.123 0.865 Treg L2
ENSG00000125703 ATG4C 153371 sc-eQTL 5.63e-01 0.0729 0.126 0.865 Treg L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 5.39e-01 0.0812 0.132 0.865 Treg L2
ENSG00000162607 USP1 501206 sc-eQTL 6.37e-02 0.236 0.127 0.865 Treg L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 4.47e-01 -0.096 0.126 0.865 Treg L2
ENSG00000079739 PGM1 -655908 sc-eQTL 5.15e-01 -0.0837 0.128 0.866 cDC L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.21e-01 -0.105 0.13 0.866 cDC L2
ENSG00000116641 DOCK7 249117 sc-eQTL 6.08e-01 0.0657 0.128 0.866 cDC L2
ENSG00000125703 ATG4C 153371 sc-eQTL 9.73e-01 0.00371 0.111 0.866 cDC L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 8.43e-01 -0.0279 0.141 0.866 cDC L2
ENSG00000162607 USP1 501206 sc-eQTL 7.57e-01 -0.0388 0.125 0.866 cDC L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 2.43e-01 -0.132 0.113 0.866 cDC L2
ENSG00000079739 PGM1 -655908 sc-eQTL 1.93e-01 0.151 0.116 0.865 cMono_IL1B L2
ENSG00000088035 ALG6 -430072 sc-eQTL 6.87e-01 0.0469 0.116 0.865 cMono_IL1B L2
ENSG00000116641 DOCK7 249117 sc-eQTL 3.29e-01 -0.12 0.123 0.865 cMono_IL1B L2
ENSG00000125703 ATG4C 153371 sc-eQTL 6.66e-01 0.0373 0.0863 0.865 cMono_IL1B L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 3.80e-01 -0.107 0.122 0.865 cMono_IL1B L2
ENSG00000162607 USP1 501206 sc-eQTL 7.36e-01 0.0364 0.108 0.865 cMono_IL1B L2
ENSG00000240563 L1TD1 742654 sc-eQTL 8.32e-01 -0.023 0.108 0.865 cMono_IL1B L2
ENSG00000079739 PGM1 -655908 sc-eQTL 9.83e-01 0.00278 0.13 0.865 cMono_S100A L2
ENSG00000088035 ALG6 -430072 sc-eQTL 3.41e-01 -0.125 0.131 0.865 cMono_S100A L2
ENSG00000116641 DOCK7 249117 sc-eQTL 3.54e-01 0.113 0.122 0.865 cMono_S100A L2
ENSG00000125703 ATG4C 153371 sc-eQTL 4.72e-01 0.0761 0.106 0.865 cMono_S100A L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 9.76e-01 -0.00356 0.119 0.865 cMono_S100A L2
ENSG00000162607 USP1 501206 sc-eQTL 7.88e-01 -0.0331 0.123 0.865 cMono_S100A L2
ENSG00000240563 L1TD1 742654 sc-eQTL 1.36e-01 -0.152 0.102 0.865 cMono_S100A L2
ENSG00000079739 PGM1 -655908 sc-eQTL 1.85e-01 0.186 0.14 0.858 gdT L2
ENSG00000088035 ALG6 -430072 sc-eQTL 1.75e-01 -0.203 0.149 0.858 gdT L2
ENSG00000116641 DOCK7 249117 sc-eQTL 7.64e-01 0.0442 0.147 0.858 gdT L2
ENSG00000125703 ATG4C 153371 sc-eQTL 8.42e-01 -0.0281 0.141 0.858 gdT L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.84e-01 0.0609 0.149 0.858 gdT L2
ENSG00000162607 USP1 501206 sc-eQTL 9.29e-02 0.237 0.14 0.858 gdT L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.11e-01 -0.149 0.146 0.858 gdT L2
ENSG00000079739 PGM1 -655908 sc-eQTL 7.15e-01 0.0475 0.13 0.864 intMono L2
ENSG00000088035 ALG6 -430072 sc-eQTL 4.85e-01 -0.0847 0.121 0.864 intMono L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.43e-01 0.0245 0.124 0.864 intMono L2
ENSG00000125703 ATG4C 153371 sc-eQTL 2.95e-01 0.124 0.118 0.864 intMono L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 1.11e-01 -0.207 0.129 0.864 intMono L2
ENSG00000162607 USP1 501206 sc-eQTL 2.58e-01 -0.15 0.132 0.864 intMono L2
ENSG00000240563 L1TD1 742654 sc-eQTL 6.17e-01 -0.0488 0.0973 0.864 intMono L2
ENSG00000079739 PGM1 -655908 sc-eQTL 4.74e-01 0.0828 0.115 0.862 ncMono L2
ENSG00000088035 ALG6 -430072 sc-eQTL 1.29e-01 0.193 0.126 0.862 ncMono L2
ENSG00000116641 DOCK7 249117 sc-eQTL 8.66e-01 -0.0211 0.125 0.862 ncMono L2
ENSG00000125703 ATG4C 153371 sc-eQTL 7.25e-01 -0.0411 0.117 0.862 ncMono L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 3.95e-01 0.104 0.122 0.862 ncMono L2
ENSG00000162607 USP1 501206 sc-eQTL 3.69e-02 -0.259 0.123 0.862 ncMono L2
ENSG00000240563 L1TD1 742654 sc-eQTL 6.61e-01 -0.0388 0.0885 0.862 ncMono L2
ENSG00000079739 PGM1 -655908 sc-eQTL 6.36e-01 -0.0692 0.146 0.864 pDC L2
ENSG00000088035 ALG6 -430072 sc-eQTL 5.46e-01 -0.086 0.142 0.864 pDC L2
ENSG00000116641 DOCK7 249117 sc-eQTL 5.96e-01 0.0772 0.145 0.864 pDC L2
ENSG00000125703 ATG4C 153371 sc-eQTL 9.32e-01 0.0111 0.13 0.864 pDC L2
ENSG00000142856 ITGB3BP -656218 sc-eQTL 1.97e-01 0.188 0.146 0.864 pDC L2
ENSG00000162607 USP1 501206 sc-eQTL 4.63e-01 0.11 0.149 0.864 pDC L2
ENSG00000203965 EFCAB7 -585869 sc-eQTL 6.11e-01 -0.0659 0.129 0.864 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -655908 sc-eQTL 3.64e-01 0.11 0.121 0.865 B_Memory LOneK1K
ENSG00000088035 ALG6 -430072 sc-eQTL 6.98e-01 0.0522 0.134 0.865 B_Memory LOneK1K
ENSG00000116641 DOCK7 249117 sc-eQTL 3.49e-01 -0.109 0.116 0.865 B_Memory LOneK1K
ENSG00000125703 ATG4C 153371 sc-eQTL 7.58e-01 0.029 0.0941 0.865 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -656218 sc-eQTL 2.94e-01 -0.13 0.123 0.865 B_Memory LOneK1K
ENSG00000162607 USP1 501206 sc-eQTL 2.71e-01 0.132 0.12 0.865 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -585869 sc-eQTL 9.94e-01 -0.000926 0.129 0.865 B_Memory LOneK1K
ENSG00000079739 PGM1 -655908 sc-eQTL 1.06e-01 -0.202 0.124 0.865 B_Naive LOneK1K
ENSG00000088035 ALG6 -430072 sc-eQTL 2.37e-01 -0.152 0.128 0.865 B_Naive LOneK1K
ENSG00000116641 DOCK7 249117 sc-eQTL 5.75e-02 -0.227 0.119 0.865 B_Naive LOneK1K
ENSG00000125703 ATG4C 153371 sc-eQTL 6.11e-01 -0.0467 0.0916 0.865 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -656218 sc-eQTL 1.67e-01 0.179 0.129 0.865 B_Naive LOneK1K
ENSG00000162607 USP1 501206 sc-eQTL 3.76e-01 -0.0987 0.111 0.865 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -585869 sc-eQTL 2.56e-01 -0.148 0.13 0.865 B_Naive LOneK1K
ENSG00000079739 PGM1 -655908 sc-eQTL 5.93e-01 0.0634 0.119 0.865 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -430072 sc-eQTL 9.79e-01 0.00308 0.115 0.865 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 249117 sc-eQTL 7.96e-01 -0.0299 0.116 0.865 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 153371 sc-eQTL 2.91e-01 0.0844 0.0798 0.865 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -656218 sc-eQTL 7.52e-01 -0.0375 0.118 0.865 CD14_Mono LOneK1K
ENSG00000162607 USP1 501206 sc-eQTL 4.48e-01 0.0767 0.101 0.865 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 742654 sc-eQTL 5.33e-01 -0.0684 0.11 0.865 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -655908 sc-eQTL 7.39e-01 0.0379 0.113 0.866 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -430072 sc-eQTL 3.53e-01 0.12 0.129 0.866 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 249117 sc-eQTL 9.63e-01 0.0059 0.127 0.866 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 153371 sc-eQTL 7.31e-01 -0.0374 0.109 0.866 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -656218 sc-eQTL 6.24e-01 -0.0618 0.126 0.866 CD16_Mono LOneK1K
ENSG00000162607 USP1 501206 sc-eQTL 1.98e-01 -0.152 0.118 0.866 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 742654 sc-eQTL 7.93e-01 -0.0212 0.0808 0.866 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -655908 sc-eQTL 4.86e-01 0.0673 0.0964 0.866 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -430072 sc-eQTL 9.59e-02 0.193 0.115 0.866 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 249117 sc-eQTL 3.71e-01 0.0929 0.104 0.866 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 153371 sc-eQTL 9.33e-01 -0.0087 0.104 0.866 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -656218 sc-eQTL 4.92e-01 -0.0845 0.123 0.866 NK_CD56dim LOneK1K
ENSG00000162607 USP1 501206 sc-eQTL 2.39e-01 -0.131 0.111 0.866 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -585869 sc-eQTL 3.12e-01 0.137 0.135 0.866 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079739 PGM1 -655908 eQTL 0.134 -0.0345 0.023 0.00644 0.0 0.173
ENSG00000240563 L1TD1 742654 eQTL 0.0259 0.111 0.0496 0.0 0.0 0.173

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina