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Genes within 1Mb (chr1:62906846:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686565 sc-eQTL 2.30e-01 -0.172 0.143 0.921 B L1
ENSG00000088035 ALG6 -460729 sc-eQTL 9.97e-01 0.000571 0.149 0.921 B L1
ENSG00000116641 DOCK7 218460 sc-eQTL 1.66e-01 -0.206 0.148 0.921 B L1
ENSG00000125703 ATG4C 122714 sc-eQTL 6.22e-01 0.051 0.103 0.921 B L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 7.03e-01 -0.0628 0.164 0.921 B L1
ENSG00000162607 USP1 470549 sc-eQTL 7.46e-01 -0.0462 0.143 0.921 B L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.94e-01 0.115 0.168 0.921 B L1
ENSG00000079739 PGM1 -686565 sc-eQTL 6.19e-02 -0.233 0.124 0.921 CD4T L1
ENSG00000088035 ALG6 -460729 sc-eQTL 8.30e-01 0.0298 0.138 0.921 CD4T L1
ENSG00000116641 DOCK7 218460 sc-eQTL 1.04e-01 -0.227 0.139 0.921 CD4T L1
ENSG00000125703 ATG4C 122714 sc-eQTL 6.96e-02 -0.204 0.112 0.921 CD4T L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 6.43e-01 -0.0745 0.16 0.921 CD4T L1
ENSG00000162607 USP1 470549 sc-eQTL 8.18e-01 0.0253 0.11 0.921 CD4T L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 2.88e-01 -0.153 0.144 0.921 CD4T L1
ENSG00000079739 PGM1 -686565 sc-eQTL 6.14e-01 -0.0695 0.138 0.921 CD8T L1
ENSG00000088035 ALG6 -460729 sc-eQTL 9.59e-01 -0.00783 0.152 0.921 CD8T L1
ENSG00000116641 DOCK7 218460 sc-eQTL 6.29e-01 0.0745 0.154 0.921 CD8T L1
ENSG00000125703 ATG4C 122714 sc-eQTL 4.90e-02 0.287 0.145 0.921 CD8T L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 1.23e-01 -0.252 0.163 0.921 CD8T L1
ENSG00000162607 USP1 470549 sc-eQTL 5.28e-01 0.0804 0.127 0.921 CD8T L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.56e-01 0.121 0.163 0.921 CD8T L1
ENSG00000079739 PGM1 -686565 sc-eQTL 8.21e-01 -0.0341 0.15 0.919 DC L1
ENSG00000088035 ALG6 -460729 sc-eQTL 9.12e-01 -0.0172 0.155 0.919 DC L1
ENSG00000116641 DOCK7 218460 sc-eQTL 2.38e-01 0.187 0.158 0.919 DC L1
ENSG00000125703 ATG4C 122714 sc-eQTL 2.65e-01 0.138 0.124 0.919 DC L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 2.05e-01 0.22 0.173 0.919 DC L1
ENSG00000162607 USP1 470549 sc-eQTL 4.77e-01 0.108 0.152 0.919 DC L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.59e-01 -0.112 0.151 0.919 DC L1
ENSG00000079739 PGM1 -686565 sc-eQTL 2.66e-01 -0.167 0.149 0.921 Mono L1
ENSG00000088035 ALG6 -460729 sc-eQTL 1.87e-02 -0.366 0.154 0.921 Mono L1
ENSG00000116641 DOCK7 218460 sc-eQTL 9.39e-01 -0.0115 0.151 0.921 Mono L1
ENSG00000125703 ATG4C 122714 sc-eQTL 2.81e-01 0.11 0.102 0.921 Mono L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.21e-01 -0.104 0.161 0.921 Mono L1
ENSG00000162607 USP1 470549 sc-eQTL 4.49e-01 0.1 0.132 0.921 Mono L1
ENSG00000240563 L1TD1 711997 sc-eQTL 7.05e-01 -0.0468 0.124 0.921 Mono L1
ENSG00000079739 PGM1 -686565 sc-eQTL 9.99e-02 0.211 0.127 0.921 NK L1
ENSG00000088035 ALG6 -460729 sc-eQTL 7.59e-02 0.266 0.149 0.921 NK L1
ENSG00000116641 DOCK7 218460 sc-eQTL 6.51e-01 -0.0561 0.124 0.921 NK L1
ENSG00000125703 ATG4C 122714 sc-eQTL 3.12e-02 0.285 0.131 0.921 NK L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 1.34e-01 -0.247 0.164 0.921 NK L1
ENSG00000162607 USP1 470549 sc-eQTL 9.95e-01 -0.000984 0.148 0.921 NK L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 8.06e-01 -0.0442 0.179 0.921 NK L1
ENSG00000079739 PGM1 -686565 sc-eQTL 5.35e-01 -0.0896 0.144 0.921 Other_T L1
ENSG00000088035 ALG6 -460729 sc-eQTL 7.70e-01 0.0424 0.145 0.921 Other_T L1
ENSG00000116641 DOCK7 218460 sc-eQTL 7.05e-01 0.056 0.148 0.921 Other_T L1
ENSG00000125703 ATG4C 122714 sc-eQTL 7.62e-01 -0.0388 0.128 0.921 Other_T L1
ENSG00000142856 ITGB3BP -686875 sc-eQTL 7.87e-01 -0.0307 0.114 0.921 Other_T L1
ENSG00000162607 USP1 470549 sc-eQTL 1.18e-01 0.154 0.0979 0.921 Other_T L1
ENSG00000203965 EFCAB7 -616526 sc-eQTL 8.59e-01 -0.0313 0.175 0.921 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686565 sc-eQTL 8.50e-01 -0.038 0.201 0.926 B_Activated L2
ENSG00000088035 ALG6 -460729 sc-eQTL 9.70e-01 0.00728 0.193 0.926 B_Activated L2
ENSG00000116641 DOCK7 218460 sc-eQTL 3.72e-01 -0.16 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C 122714 sc-eQTL 4.51e-01 0.142 0.189 0.926 B_Activated L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 2.60e-01 0.208 0.184 0.926 B_Activated L2
ENSG00000162607 USP1 470549 sc-eQTL 7.39e-01 0.0668 0.2 0.926 B_Activated L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 7.19e-01 -0.0629 0.175 0.926 B_Activated L2
ENSG00000079739 PGM1 -686565 sc-eQTL 4.32e-01 -0.134 0.171 0.921 B_Intermediate L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.09e-01 0.115 0.173 0.921 B_Intermediate L2
ENSG00000116641 DOCK7 218460 sc-eQTL 2.43e-01 -0.193 0.165 0.921 B_Intermediate L2
ENSG00000125703 ATG4C 122714 sc-eQTL 2.86e-01 0.15 0.14 0.921 B_Intermediate L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 3.49e-01 -0.156 0.167 0.921 B_Intermediate L2
ENSG00000162607 USP1 470549 sc-eQTL 1.43e-01 0.244 0.166 0.921 B_Intermediate L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 1.12e-01 0.263 0.165 0.921 B_Intermediate L2
ENSG00000079739 PGM1 -686565 sc-eQTL 5.87e-01 0.0909 0.167 0.92 B_Memory L2
ENSG00000088035 ALG6 -460729 sc-eQTL 3.38e-01 -0.163 0.17 0.92 B_Memory L2
ENSG00000116641 DOCK7 218460 sc-eQTL 7.84e-01 -0.0438 0.159 0.92 B_Memory L2
ENSG00000125703 ATG4C 122714 sc-eQTL 1.19e-01 -0.236 0.151 0.92 B_Memory L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 6.38e-01 0.0816 0.173 0.92 B_Memory L2
ENSG00000162607 USP1 470549 sc-eQTL 9.84e-02 0.289 0.174 0.92 B_Memory L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 7.11e-01 -0.0638 0.172 0.92 B_Memory L2
ENSG00000079739 PGM1 -686565 sc-eQTL 4.23e-02 -0.345 0.169 0.921 B_Naive1 L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.50e-01 -0.102 0.171 0.921 B_Naive1 L2
ENSG00000116641 DOCK7 218460 sc-eQTL 6.19e-01 -0.0818 0.164 0.921 B_Naive1 L2
ENSG00000125703 ATG4C 122714 sc-eQTL 4.46e-01 0.0965 0.126 0.921 B_Naive1 L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.26e-01 0.106 0.168 0.921 B_Naive1 L2
ENSG00000162607 USP1 470549 sc-eQTL 7.54e-02 -0.262 0.146 0.921 B_Naive1 L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.65e-01 0.131 0.179 0.921 B_Naive1 L2
ENSG00000079739 PGM1 -686565 sc-eQTL 1.95e-01 -0.221 0.17 0.921 B_Naive2 L2
ENSG00000088035 ALG6 -460729 sc-eQTL 8.36e-01 0.0369 0.178 0.921 B_Naive2 L2
ENSG00000116641 DOCK7 218460 sc-eQTL 8.73e-01 -0.0273 0.171 0.921 B_Naive2 L2
ENSG00000125703 ATG4C 122714 sc-eQTL 9.52e-01 -0.00996 0.165 0.921 B_Naive2 L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 4.35e-01 -0.14 0.178 0.921 B_Naive2 L2
ENSG00000162607 USP1 470549 sc-eQTL 3.13e-01 -0.172 0.17 0.921 B_Naive2 L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 6.10e-01 -0.0906 0.178 0.921 B_Naive2 L2
ENSG00000079739 PGM1 -686565 sc-eQTL 4.55e-01 -0.13 0.173 0.92 CD4_CTL L2
ENSG00000088035 ALG6 -460729 sc-eQTL 6.64e-01 -0.0799 0.183 0.92 CD4_CTL L2
ENSG00000116641 DOCK7 218460 sc-eQTL 9.40e-01 -0.0121 0.16 0.92 CD4_CTL L2
ENSG00000125703 ATG4C 122714 sc-eQTL 4.11e-01 0.136 0.166 0.92 CD4_CTL L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.63e-01 0.0307 0.177 0.92 CD4_CTL L2
ENSG00000162607 USP1 470549 sc-eQTL 9.42e-01 0.0124 0.169 0.92 CD4_CTL L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 1.37e-02 -0.413 0.166 0.92 CD4_CTL L2
ENSG00000079739 PGM1 -686565 sc-eQTL 9.02e-02 -0.236 0.139 0.921 CD4_Naive L2
ENSG00000088035 ALG6 -460729 sc-eQTL 2.74e-01 0.166 0.151 0.921 CD4_Naive L2
ENSG00000116641 DOCK7 218460 sc-eQTL 8.57e-02 -0.256 0.148 0.921 CD4_Naive L2
ENSG00000125703 ATG4C 122714 sc-eQTL 3.54e-01 -0.122 0.132 0.921 CD4_Naive L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.49e-01 -0.0306 0.161 0.921 CD4_Naive L2
ENSG00000162607 USP1 470549 sc-eQTL 8.17e-01 0.0285 0.123 0.921 CD4_Naive L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 5.05e-01 -0.107 0.16 0.921 CD4_Naive L2
ENSG00000079739 PGM1 -686565 sc-eQTL 5.17e-01 -0.0945 0.146 0.921 CD4_TCM L2
ENSG00000088035 ALG6 -460729 sc-eQTL 1.44e-01 -0.247 0.168 0.921 CD4_TCM L2
ENSG00000116641 DOCK7 218460 sc-eQTL 4.60e-01 -0.111 0.15 0.921 CD4_TCM L2
ENSG00000125703 ATG4C 122714 sc-eQTL 2.75e-01 -0.16 0.146 0.921 CD4_TCM L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 1.81e-01 -0.23 0.172 0.921 CD4_TCM L2
ENSG00000162607 USP1 470549 sc-eQTL 6.38e-01 0.0665 0.141 0.921 CD4_TCM L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 8.07e-01 -0.0408 0.167 0.921 CD4_TCM L2
ENSG00000079739 PGM1 -686565 sc-eQTL 1.07e-01 -0.277 0.171 0.921 CD4_TEM L2
ENSG00000088035 ALG6 -460729 sc-eQTL 3.80e-01 -0.152 0.173 0.921 CD4_TEM L2
ENSG00000116641 DOCK7 218460 sc-eQTL 2.35e-01 -0.2 0.168 0.921 CD4_TEM L2
ENSG00000125703 ATG4C 122714 sc-eQTL 2.00e-01 -0.21 0.163 0.921 CD4_TEM L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.30e-01 -0.106 0.169 0.921 CD4_TEM L2
ENSG00000162607 USP1 470549 sc-eQTL 4.00e-01 0.135 0.16 0.921 CD4_TEM L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 6.67e-01 0.0754 0.175 0.921 CD4_TEM L2
ENSG00000079739 PGM1 -686565 sc-eQTL 6.01e-01 -0.0817 0.156 0.921 CD8_CTL L2
ENSG00000088035 ALG6 -460729 sc-eQTL 8.81e-01 0.0248 0.166 0.921 CD8_CTL L2
ENSG00000116641 DOCK7 218460 sc-eQTL 9.41e-01 -0.0116 0.158 0.921 CD8_CTL L2
ENSG00000125703 ATG4C 122714 sc-eQTL 1.94e-02 0.39 0.166 0.921 CD8_CTL L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.28e-02 -0.337 0.173 0.921 CD8_CTL L2
ENSG00000162607 USP1 470549 sc-eQTL 6.98e-01 -0.0607 0.156 0.921 CD8_CTL L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 5.04e-01 -0.119 0.178 0.921 CD8_CTL L2
ENSG00000079739 PGM1 -686565 sc-eQTL 1.09e-01 0.258 0.16 0.921 CD8_Naive L2
ENSG00000088035 ALG6 -460729 sc-eQTL 7.19e-01 -0.0601 0.167 0.921 CD8_Naive L2
ENSG00000116641 DOCK7 218460 sc-eQTL 6.45e-01 -0.0794 0.172 0.921 CD8_Naive L2
ENSG00000125703 ATG4C 122714 sc-eQTL 1.17e-01 0.259 0.165 0.921 CD8_Naive L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.42e-01 -0.0334 0.168 0.921 CD8_Naive L2
ENSG00000162607 USP1 470549 sc-eQTL 6.51e-01 0.0641 0.142 0.921 CD8_Naive L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 6.02e-01 0.0825 0.158 0.921 CD8_Naive L2
ENSG00000079739 PGM1 -686565 sc-eQTL 8.82e-01 0.0261 0.175 0.921 CD8_TCM L2
ENSG00000088035 ALG6 -460729 sc-eQTL 4.66e-01 -0.129 0.177 0.921 CD8_TCM L2
ENSG00000116641 DOCK7 218460 sc-eQTL 7.16e-01 0.0631 0.173 0.921 CD8_TCM L2
ENSG00000125703 ATG4C 122714 sc-eQTL 3.74e-01 -0.157 0.177 0.921 CD8_TCM L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.08e-02 -0.335 0.17 0.921 CD8_TCM L2
ENSG00000162607 USP1 470549 sc-eQTL 7.82e-02 0.291 0.164 0.921 CD8_TCM L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 3.49e-02 0.368 0.173 0.921 CD8_TCM L2
ENSG00000079739 PGM1 -686565 sc-eQTL 3.02e-01 0.183 0.177 0.922 CD8_TEM L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.72e-01 0.101 0.178 0.922 CD8_TEM L2
ENSG00000116641 DOCK7 218460 sc-eQTL 1.36e-01 0.257 0.172 0.922 CD8_TEM L2
ENSG00000125703 ATG4C 122714 sc-eQTL 7.56e-01 0.0517 0.166 0.922 CD8_TEM L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 4.65e-01 0.131 0.18 0.922 CD8_TEM L2
ENSG00000162607 USP1 470549 sc-eQTL 4.81e-01 0.121 0.171 0.922 CD8_TEM L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 6.04e-01 -0.0905 0.174 0.922 CD8_TEM L2
ENSG00000079739 PGM1 -686565 sc-eQTL 3.62e-01 -0.154 0.169 0.92 MAIT L2
ENSG00000088035 ALG6 -460729 sc-eQTL 9.37e-01 -0.0133 0.167 0.92 MAIT L2
ENSG00000116641 DOCK7 218460 sc-eQTL 1.30e-01 0.242 0.16 0.92 MAIT L2
ENSG00000125703 ATG4C 122714 sc-eQTL 3.75e-01 -0.15 0.169 0.92 MAIT L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 7.26e-01 -0.0594 0.169 0.92 MAIT L2
ENSG00000162607 USP1 470549 sc-eQTL 7.02e-01 -0.0644 0.168 0.92 MAIT L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 7.35e-01 0.0591 0.175 0.92 MAIT L2
ENSG00000079739 PGM1 -686565 sc-eQTL 5.17e-01 -0.11 0.169 0.922 NK_CD56bright L2
ENSG00000088035 ALG6 -460729 sc-eQTL 6.06e-01 0.0895 0.173 0.922 NK_CD56bright L2
ENSG00000116641 DOCK7 218460 sc-eQTL 1.67e-01 -0.207 0.15 0.922 NK_CD56bright L2
ENSG00000125703 ATG4C 122714 sc-eQTL 5.19e-01 -0.108 0.168 0.922 NK_CD56bright L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.21e-01 -0.112 0.175 0.922 NK_CD56bright L2
ENSG00000162607 USP1 470549 sc-eQTL 3.76e-01 -0.16 0.18 0.922 NK_CD56bright L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 8.33e-01 0.0364 0.172 0.922 NK_CD56bright L2
ENSG00000079739 PGM1 -686565 sc-eQTL 8.78e-01 0.0208 0.135 0.92 NK_CD56dim L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.76e-01 0.0957 0.171 0.92 NK_CD56dim L2
ENSG00000116641 DOCK7 218460 sc-eQTL 4.25e-01 0.119 0.149 0.92 NK_CD56dim L2
ENSG00000125703 ATG4C 122714 sc-eQTL 2.83e-01 0.162 0.151 0.92 NK_CD56dim L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 3.91e-02 -0.353 0.17 0.92 NK_CD56dim L2
ENSG00000162607 USP1 470549 sc-eQTL 5.47e-01 0.101 0.167 0.92 NK_CD56dim L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.58e-01 -0.138 0.185 0.92 NK_CD56dim L2
ENSG00000079739 PGM1 -686565 sc-eQTL 1.09e-01 0.287 0.178 0.92 NK_HLA L2
ENSG00000088035 ALG6 -460729 sc-eQTL 4.84e-02 0.366 0.184 0.92 NK_HLA L2
ENSG00000116641 DOCK7 218460 sc-eQTL 7.59e-01 -0.0437 0.142 0.92 NK_HLA L2
ENSG00000125703 ATG4C 122714 sc-eQTL 3.81e-01 0.145 0.165 0.92 NK_HLA L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 2.91e-01 -0.183 0.173 0.92 NK_HLA L2
ENSG00000162607 USP1 470549 sc-eQTL 4.80e-01 -0.129 0.182 0.92 NK_HLA L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 4.53e-01 0.124 0.165 0.92 NK_HLA L2
ENSG00000079739 PGM1 -686565 sc-eQTL 1.99e-01 0.185 0.143 0.92 NK_cytokine L2
ENSG00000088035 ALG6 -460729 sc-eQTL 9.82e-02 0.268 0.162 0.92 NK_cytokine L2
ENSG00000116641 DOCK7 218460 sc-eQTL 4.66e-01 -0.11 0.15 0.92 NK_cytokine L2
ENSG00000125703 ATG4C 122714 sc-eQTL 2.99e-01 0.16 0.154 0.92 NK_cytokine L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 3.91e-01 -0.137 0.159 0.92 NK_cytokine L2
ENSG00000162607 USP1 470549 sc-eQTL 6.57e-01 -0.0747 0.168 0.92 NK_cytokine L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 2.02e-01 0.217 0.169 0.92 NK_cytokine L2
ENSG00000079739 PGM1 -686565 sc-eQTL 2.13e-01 -0.27 0.216 0.937 PB L2
ENSG00000088035 ALG6 -460729 sc-eQTL 3.87e-01 0.197 0.227 0.937 PB L2
ENSG00000116641 DOCK7 218460 sc-eQTL 7.02e-01 0.0936 0.244 0.937 PB L2
ENSG00000125703 ATG4C 122714 sc-eQTL 5.38e-01 0.131 0.212 0.937 PB L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 2.44e-01 -0.247 0.211 0.937 PB L2
ENSG00000162607 USP1 470549 sc-eQTL 1.27e-01 0.322 0.209 0.937 PB L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 2.68e-01 -0.258 0.232 0.937 PB L2
ENSG00000079739 PGM1 -686565 sc-eQTL 9.62e-01 0.00739 0.156 0.92 Pro_T L2
ENSG00000088035 ALG6 -460729 sc-eQTL 6.58e-01 -0.0701 0.158 0.92 Pro_T L2
ENSG00000116641 DOCK7 218460 sc-eQTL 7.76e-01 0.0453 0.159 0.92 Pro_T L2
ENSG00000125703 ATG4C 122714 sc-eQTL 6.95e-01 -0.0545 0.139 0.92 Pro_T L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 9.53e-01 0.00833 0.14 0.92 Pro_T L2
ENSG00000162607 USP1 470549 sc-eQTL 7.91e-01 0.0255 0.096 0.92 Pro_T L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 7.49e-01 -0.0519 0.162 0.92 Pro_T L2
ENSG00000079739 PGM1 -686565 sc-eQTL 7.43e-01 -0.0546 0.166 0.921 Treg L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.29e-01 -0.112 0.178 0.921 Treg L2
ENSG00000116641 DOCK7 218460 sc-eQTL 3.69e-01 -0.147 0.163 0.921 Treg L2
ENSG00000125703 ATG4C 122714 sc-eQTL 3.08e-01 0.17 0.166 0.921 Treg L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 2.03e-01 0.222 0.174 0.921 Treg L2
ENSG00000162607 USP1 470549 sc-eQTL 7.28e-01 0.0588 0.169 0.921 Treg L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 2.70e-01 -0.184 0.166 0.921 Treg L2
ENSG00000079739 PGM1 -686565 sc-eQTL 5.81e-01 -0.0902 0.163 0.915 cDC L2
ENSG00000088035 ALG6 -460729 sc-eQTL 7.93e-01 -0.0434 0.165 0.915 cDC L2
ENSG00000116641 DOCK7 218460 sc-eQTL 3.29e-01 0.159 0.162 0.915 cDC L2
ENSG00000125703 ATG4C 122714 sc-eQTL 6.13e-01 0.0714 0.141 0.915 cDC L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 6.83e-01 0.073 0.179 0.915 cDC L2
ENSG00000162607 USP1 470549 sc-eQTL 4.87e-01 -0.111 0.159 0.915 cDC L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 1.73e-01 -0.196 0.143 0.915 cDC L2
ENSG00000079739 PGM1 -686565 sc-eQTL 2.21e-01 -0.193 0.157 0.921 cMono_IL1B L2
ENSG00000088035 ALG6 -460729 sc-eQTL 4.77e-02 -0.311 0.156 0.921 cMono_IL1B L2
ENSG00000116641 DOCK7 218460 sc-eQTL 4.64e-01 0.122 0.166 0.921 cMono_IL1B L2
ENSG00000125703 ATG4C 122714 sc-eQTL 5.40e-01 0.0717 0.117 0.921 cMono_IL1B L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.58e-01 -0.0296 0.165 0.921 cMono_IL1B L2
ENSG00000162607 USP1 470549 sc-eQTL 2.77e-01 0.159 0.145 0.921 cMono_IL1B L2
ENSG00000240563 L1TD1 711997 sc-eQTL 4.00e-01 0.123 0.146 0.921 cMono_IL1B L2
ENSG00000079739 PGM1 -686565 sc-eQTL 2.89e-01 -0.185 0.174 0.921 cMono_S100A L2
ENSG00000088035 ALG6 -460729 sc-eQTL 2.71e-03 -0.524 0.173 0.921 cMono_S100A L2
ENSG00000116641 DOCK7 218460 sc-eQTL 4.87e-01 -0.114 0.163 0.921 cMono_S100A L2
ENSG00000125703 ATG4C 122714 sc-eQTL 4.23e-01 0.114 0.141 0.921 cMono_S100A L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 9.08e-01 0.0185 0.16 0.921 cMono_S100A L2
ENSG00000162607 USP1 470549 sc-eQTL 5.48e-01 -0.0989 0.164 0.921 cMono_S100A L2
ENSG00000240563 L1TD1 711997 sc-eQTL 5.64e-01 0.0789 0.137 0.921 cMono_S100A L2
ENSG00000079739 PGM1 -686565 sc-eQTL 5.31e-01 0.117 0.186 0.915 gdT L2
ENSG00000088035 ALG6 -460729 sc-eQTL 4.83e-01 -0.139 0.198 0.915 gdT L2
ENSG00000116641 DOCK7 218460 sc-eQTL 6.81e-01 -0.0802 0.195 0.915 gdT L2
ENSG00000125703 ATG4C 122714 sc-eQTL 4.10e-01 -0.153 0.186 0.915 gdT L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 4.42e-01 -0.152 0.197 0.915 gdT L2
ENSG00000162607 USP1 470549 sc-eQTL 1.96e-01 0.242 0.186 0.915 gdT L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 3.17e-01 -0.195 0.194 0.915 gdT L2
ENSG00000079739 PGM1 -686565 sc-eQTL 8.12e-01 0.0418 0.175 0.922 intMono L2
ENSG00000088035 ALG6 -460729 sc-eQTL 9.48e-01 -0.0107 0.163 0.922 intMono L2
ENSG00000116641 DOCK7 218460 sc-eQTL 5.55e-01 0.0986 0.167 0.922 intMono L2
ENSG00000125703 ATG4C 122714 sc-eQTL 1.12e-01 0.253 0.158 0.922 intMono L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 6.33e-01 -0.0837 0.175 0.922 intMono L2
ENSG00000162607 USP1 470549 sc-eQTL 4.75e-02 -0.352 0.177 0.922 intMono L2
ENSG00000240563 L1TD1 711997 sc-eQTL 6.90e-01 -0.0523 0.131 0.922 intMono L2
ENSG00000079739 PGM1 -686565 sc-eQTL 7.81e-01 -0.0427 0.153 0.916 ncMono L2
ENSG00000088035 ALG6 -460729 sc-eQTL 3.79e-01 0.148 0.168 0.916 ncMono L2
ENSG00000116641 DOCK7 218460 sc-eQTL 3.95e-01 -0.141 0.166 0.916 ncMono L2
ENSG00000125703 ATG4C 122714 sc-eQTL 6.04e-01 -0.0806 0.155 0.916 ncMono L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 5.25e-01 -0.103 0.162 0.916 ncMono L2
ENSG00000162607 USP1 470549 sc-eQTL 6.91e-01 -0.0659 0.166 0.916 ncMono L2
ENSG00000240563 L1TD1 711997 sc-eQTL 5.05e-01 -0.0784 0.117 0.916 ncMono L2
ENSG00000079739 PGM1 -686565 sc-eQTL 9.79e-01 0.00471 0.179 0.91 pDC L2
ENSG00000088035 ALG6 -460729 sc-eQTL 5.64e-01 0.101 0.175 0.91 pDC L2
ENSG00000116641 DOCK7 218460 sc-eQTL 2.59e-01 0.202 0.178 0.91 pDC L2
ENSG00000125703 ATG4C 122714 sc-eQTL 5.57e-01 0.0941 0.16 0.91 pDC L2
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.99e-02 0.304 0.178 0.91 pDC L2
ENSG00000162607 USP1 470549 sc-eQTL 7.40e-01 0.0609 0.183 0.91 pDC L2
ENSG00000203965 EFCAB7 -616526 sc-eQTL 9.01e-01 -0.0198 0.159 0.91 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686565 sc-eQTL 7.69e-01 -0.0468 0.159 0.921 B_Memory LOneK1K
ENSG00000088035 ALG6 -460729 sc-eQTL 9.29e-01 -0.0157 0.176 0.921 B_Memory LOneK1K
ENSG00000116641 DOCK7 218460 sc-eQTL 4.27e-01 -0.121 0.152 0.921 B_Memory LOneK1K
ENSG00000125703 ATG4C 122714 sc-eQTL 9.76e-01 0.00364 0.123 0.921 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -686875 sc-eQTL 7.02e-01 -0.0621 0.162 0.921 B_Memory LOneK1K
ENSG00000162607 USP1 470549 sc-eQTL 2.29e-02 0.356 0.156 0.921 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -616526 sc-eQTL 3.34e-01 0.163 0.169 0.921 B_Memory LOneK1K
ENSG00000079739 PGM1 -686565 sc-eQTL 4.98e-02 -0.326 0.165 0.921 B_Naive LOneK1K
ENSG00000088035 ALG6 -460729 sc-eQTL 9.24e-01 -0.0164 0.172 0.921 B_Naive LOneK1K
ENSG00000116641 DOCK7 218460 sc-eQTL 4.46e-01 -0.122 0.16 0.921 B_Naive LOneK1K
ENSG00000125703 ATG4C 122714 sc-eQTL 5.25e-01 0.0777 0.122 0.921 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.95e-01 0.0229 0.173 0.921 B_Naive LOneK1K
ENSG00000162607 USP1 470549 sc-eQTL 3.61e-02 -0.31 0.147 0.921 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -616526 sc-eQTL 8.44e-01 0.0343 0.174 0.921 B_Naive LOneK1K
ENSG00000079739 PGM1 -686565 sc-eQTL 1.21e-01 -0.249 0.16 0.921 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -460729 sc-eQTL 1.24e-03 -0.498 0.152 0.921 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 218460 sc-eQTL 7.40e-01 0.0521 0.157 0.921 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 122714 sc-eQTL 5.49e-01 0.0651 0.108 0.921 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -686875 sc-eQTL 9.43e-01 0.0115 0.161 0.921 CD14_Mono LOneK1K
ENSG00000162607 USP1 470549 sc-eQTL 5.98e-01 0.0723 0.137 0.921 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 711997 sc-eQTL 2.02e-01 0.189 0.148 0.921 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -686565 sc-eQTL 9.36e-01 0.0121 0.151 0.92 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -460729 sc-eQTL 3.49e-01 0.16 0.171 0.92 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 218460 sc-eQTL 6.18e-01 -0.0845 0.169 0.92 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 122714 sc-eQTL 3.26e-01 0.142 0.144 0.92 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -686875 sc-eQTL 3.85e-01 -0.146 0.167 0.92 CD16_Mono LOneK1K
ENSG00000162607 USP1 470549 sc-eQTL 3.29e-01 -0.154 0.157 0.92 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 711997 sc-eQTL 3.81e-01 -0.0941 0.107 0.92 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -686565 sc-eQTL 7.75e-02 0.231 0.13 0.92 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -460729 sc-eQTL 1.31e-01 0.237 0.156 0.92 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 218460 sc-eQTL 9.02e-01 -0.0173 0.141 0.92 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 122714 sc-eQTL 3.69e-02 0.292 0.139 0.92 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -686875 sc-eQTL 8.14e-02 -0.29 0.165 0.92 NK_CD56dim LOneK1K
ENSG00000162607 USP1 470549 sc-eQTL 7.54e-01 -0.0475 0.151 0.92 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -616526 sc-eQTL 9.06e-01 -0.0217 0.184 0.92 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 218478 eQTL 0.00462 0.103 0.0362 0.0 0.0 0.0962
ENSG00000125703 ATG4C 122714 eQTL 0.0358 0.0579 0.0275 0.0 0.0 0.0962

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina