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Genes within 1Mb (chr1:62906722:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686689 sc-eQTL 2.30e-01 -0.172 0.143 0.921 B L1
ENSG00000088035 ALG6 -460853 sc-eQTL 9.97e-01 0.000571 0.149 0.921 B L1
ENSG00000116641 DOCK7 218336 sc-eQTL 1.66e-01 -0.206 0.148 0.921 B L1
ENSG00000125703 ATG4C 122590 sc-eQTL 6.22e-01 0.051 0.103 0.921 B L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 7.03e-01 -0.0628 0.164 0.921 B L1
ENSG00000162607 USP1 470425 sc-eQTL 7.46e-01 -0.0462 0.143 0.921 B L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.94e-01 0.115 0.168 0.921 B L1
ENSG00000079739 PGM1 -686689 sc-eQTL 6.19e-02 -0.233 0.124 0.921 CD4T L1
ENSG00000088035 ALG6 -460853 sc-eQTL 8.30e-01 0.0298 0.138 0.921 CD4T L1
ENSG00000116641 DOCK7 218336 sc-eQTL 1.04e-01 -0.227 0.139 0.921 CD4T L1
ENSG00000125703 ATG4C 122590 sc-eQTL 6.96e-02 -0.204 0.112 0.921 CD4T L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 6.43e-01 -0.0745 0.16 0.921 CD4T L1
ENSG00000162607 USP1 470425 sc-eQTL 8.18e-01 0.0253 0.11 0.921 CD4T L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 2.88e-01 -0.153 0.144 0.921 CD4T L1
ENSG00000079739 PGM1 -686689 sc-eQTL 6.14e-01 -0.0695 0.138 0.921 CD8T L1
ENSG00000088035 ALG6 -460853 sc-eQTL 9.59e-01 -0.00783 0.152 0.921 CD8T L1
ENSG00000116641 DOCK7 218336 sc-eQTL 6.29e-01 0.0745 0.154 0.921 CD8T L1
ENSG00000125703 ATG4C 122590 sc-eQTL 4.90e-02 0.287 0.145 0.921 CD8T L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 1.23e-01 -0.252 0.163 0.921 CD8T L1
ENSG00000162607 USP1 470425 sc-eQTL 5.28e-01 0.0804 0.127 0.921 CD8T L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.56e-01 0.121 0.163 0.921 CD8T L1
ENSG00000079739 PGM1 -686689 sc-eQTL 8.21e-01 -0.0341 0.15 0.919 DC L1
ENSG00000088035 ALG6 -460853 sc-eQTL 9.12e-01 -0.0172 0.155 0.919 DC L1
ENSG00000116641 DOCK7 218336 sc-eQTL 2.38e-01 0.187 0.158 0.919 DC L1
ENSG00000125703 ATG4C 122590 sc-eQTL 2.65e-01 0.138 0.124 0.919 DC L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 2.05e-01 0.22 0.173 0.919 DC L1
ENSG00000162607 USP1 470425 sc-eQTL 4.77e-01 0.108 0.152 0.919 DC L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.59e-01 -0.112 0.151 0.919 DC L1
ENSG00000079739 PGM1 -686689 sc-eQTL 2.66e-01 -0.167 0.149 0.921 Mono L1
ENSG00000088035 ALG6 -460853 sc-eQTL 1.87e-02 -0.366 0.154 0.921 Mono L1
ENSG00000116641 DOCK7 218336 sc-eQTL 9.39e-01 -0.0115 0.151 0.921 Mono L1
ENSG00000125703 ATG4C 122590 sc-eQTL 2.81e-01 0.11 0.102 0.921 Mono L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.21e-01 -0.104 0.161 0.921 Mono L1
ENSG00000162607 USP1 470425 sc-eQTL 4.49e-01 0.1 0.132 0.921 Mono L1
ENSG00000240563 L1TD1 711873 sc-eQTL 7.05e-01 -0.0468 0.124 0.921 Mono L1
ENSG00000079739 PGM1 -686689 sc-eQTL 9.99e-02 0.211 0.127 0.921 NK L1
ENSG00000088035 ALG6 -460853 sc-eQTL 7.59e-02 0.266 0.149 0.921 NK L1
ENSG00000116641 DOCK7 218336 sc-eQTL 6.51e-01 -0.0561 0.124 0.921 NK L1
ENSG00000125703 ATG4C 122590 sc-eQTL 3.12e-02 0.285 0.131 0.921 NK L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 1.34e-01 -0.247 0.164 0.921 NK L1
ENSG00000162607 USP1 470425 sc-eQTL 9.95e-01 -0.000984 0.148 0.921 NK L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 8.06e-01 -0.0442 0.179 0.921 NK L1
ENSG00000079739 PGM1 -686689 sc-eQTL 5.35e-01 -0.0896 0.144 0.921 Other_T L1
ENSG00000088035 ALG6 -460853 sc-eQTL 7.70e-01 0.0424 0.145 0.921 Other_T L1
ENSG00000116641 DOCK7 218336 sc-eQTL 7.05e-01 0.056 0.148 0.921 Other_T L1
ENSG00000125703 ATG4C 122590 sc-eQTL 7.62e-01 -0.0388 0.128 0.921 Other_T L1
ENSG00000142856 ITGB3BP -686999 sc-eQTL 7.87e-01 -0.0307 0.114 0.921 Other_T L1
ENSG00000162607 USP1 470425 sc-eQTL 1.18e-01 0.154 0.0979 0.921 Other_T L1
ENSG00000203965 EFCAB7 -616650 sc-eQTL 8.59e-01 -0.0313 0.175 0.921 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686689 sc-eQTL 8.50e-01 -0.038 0.201 0.926 B_Activated L2
ENSG00000088035 ALG6 -460853 sc-eQTL 9.70e-01 0.00728 0.193 0.926 B_Activated L2
ENSG00000116641 DOCK7 218336 sc-eQTL 3.72e-01 -0.16 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C 122590 sc-eQTL 4.51e-01 0.142 0.189 0.926 B_Activated L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 2.60e-01 0.208 0.184 0.926 B_Activated L2
ENSG00000162607 USP1 470425 sc-eQTL 7.39e-01 0.0668 0.2 0.926 B_Activated L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 7.19e-01 -0.0629 0.175 0.926 B_Activated L2
ENSG00000079739 PGM1 -686689 sc-eQTL 4.32e-01 -0.134 0.171 0.921 B_Intermediate L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.09e-01 0.115 0.173 0.921 B_Intermediate L2
ENSG00000116641 DOCK7 218336 sc-eQTL 2.43e-01 -0.193 0.165 0.921 B_Intermediate L2
ENSG00000125703 ATG4C 122590 sc-eQTL 2.86e-01 0.15 0.14 0.921 B_Intermediate L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 3.49e-01 -0.156 0.167 0.921 B_Intermediate L2
ENSG00000162607 USP1 470425 sc-eQTL 1.43e-01 0.244 0.166 0.921 B_Intermediate L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 1.12e-01 0.263 0.165 0.921 B_Intermediate L2
ENSG00000079739 PGM1 -686689 sc-eQTL 5.87e-01 0.0909 0.167 0.92 B_Memory L2
ENSG00000088035 ALG6 -460853 sc-eQTL 3.38e-01 -0.163 0.17 0.92 B_Memory L2
ENSG00000116641 DOCK7 218336 sc-eQTL 7.84e-01 -0.0438 0.159 0.92 B_Memory L2
ENSG00000125703 ATG4C 122590 sc-eQTL 1.19e-01 -0.236 0.151 0.92 B_Memory L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 6.38e-01 0.0816 0.173 0.92 B_Memory L2
ENSG00000162607 USP1 470425 sc-eQTL 9.84e-02 0.289 0.174 0.92 B_Memory L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 7.11e-01 -0.0638 0.172 0.92 B_Memory L2
ENSG00000079739 PGM1 -686689 sc-eQTL 4.23e-02 -0.345 0.169 0.921 B_Naive1 L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.50e-01 -0.102 0.171 0.921 B_Naive1 L2
ENSG00000116641 DOCK7 218336 sc-eQTL 6.19e-01 -0.0818 0.164 0.921 B_Naive1 L2
ENSG00000125703 ATG4C 122590 sc-eQTL 4.46e-01 0.0965 0.126 0.921 B_Naive1 L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.26e-01 0.106 0.168 0.921 B_Naive1 L2
ENSG00000162607 USP1 470425 sc-eQTL 7.54e-02 -0.262 0.146 0.921 B_Naive1 L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.65e-01 0.131 0.179 0.921 B_Naive1 L2
ENSG00000079739 PGM1 -686689 sc-eQTL 1.95e-01 -0.221 0.17 0.921 B_Naive2 L2
ENSG00000088035 ALG6 -460853 sc-eQTL 8.36e-01 0.0369 0.178 0.921 B_Naive2 L2
ENSG00000116641 DOCK7 218336 sc-eQTL 8.73e-01 -0.0273 0.171 0.921 B_Naive2 L2
ENSG00000125703 ATG4C 122590 sc-eQTL 9.52e-01 -0.00996 0.165 0.921 B_Naive2 L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 4.35e-01 -0.14 0.178 0.921 B_Naive2 L2
ENSG00000162607 USP1 470425 sc-eQTL 3.13e-01 -0.172 0.17 0.921 B_Naive2 L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 6.10e-01 -0.0906 0.178 0.921 B_Naive2 L2
ENSG00000079739 PGM1 -686689 sc-eQTL 4.55e-01 -0.13 0.173 0.92 CD4_CTL L2
ENSG00000088035 ALG6 -460853 sc-eQTL 6.64e-01 -0.0799 0.183 0.92 CD4_CTL L2
ENSG00000116641 DOCK7 218336 sc-eQTL 9.40e-01 -0.0121 0.16 0.92 CD4_CTL L2
ENSG00000125703 ATG4C 122590 sc-eQTL 4.11e-01 0.136 0.166 0.92 CD4_CTL L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.63e-01 0.0307 0.177 0.92 CD4_CTL L2
ENSG00000162607 USP1 470425 sc-eQTL 9.42e-01 0.0124 0.169 0.92 CD4_CTL L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 1.37e-02 -0.413 0.166 0.92 CD4_CTL L2
ENSG00000079739 PGM1 -686689 sc-eQTL 9.02e-02 -0.236 0.139 0.921 CD4_Naive L2
ENSG00000088035 ALG6 -460853 sc-eQTL 2.74e-01 0.166 0.151 0.921 CD4_Naive L2
ENSG00000116641 DOCK7 218336 sc-eQTL 8.57e-02 -0.256 0.148 0.921 CD4_Naive L2
ENSG00000125703 ATG4C 122590 sc-eQTL 3.54e-01 -0.122 0.132 0.921 CD4_Naive L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.49e-01 -0.0306 0.161 0.921 CD4_Naive L2
ENSG00000162607 USP1 470425 sc-eQTL 8.17e-01 0.0285 0.123 0.921 CD4_Naive L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 5.05e-01 -0.107 0.16 0.921 CD4_Naive L2
ENSG00000079739 PGM1 -686689 sc-eQTL 5.17e-01 -0.0945 0.146 0.921 CD4_TCM L2
ENSG00000088035 ALG6 -460853 sc-eQTL 1.44e-01 -0.247 0.168 0.921 CD4_TCM L2
ENSG00000116641 DOCK7 218336 sc-eQTL 4.60e-01 -0.111 0.15 0.921 CD4_TCM L2
ENSG00000125703 ATG4C 122590 sc-eQTL 2.75e-01 -0.16 0.146 0.921 CD4_TCM L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 1.81e-01 -0.23 0.172 0.921 CD4_TCM L2
ENSG00000162607 USP1 470425 sc-eQTL 6.38e-01 0.0665 0.141 0.921 CD4_TCM L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 8.07e-01 -0.0408 0.167 0.921 CD4_TCM L2
ENSG00000079739 PGM1 -686689 sc-eQTL 1.07e-01 -0.277 0.171 0.921 CD4_TEM L2
ENSG00000088035 ALG6 -460853 sc-eQTL 3.80e-01 -0.152 0.173 0.921 CD4_TEM L2
ENSG00000116641 DOCK7 218336 sc-eQTL 2.35e-01 -0.2 0.168 0.921 CD4_TEM L2
ENSG00000125703 ATG4C 122590 sc-eQTL 2.00e-01 -0.21 0.163 0.921 CD4_TEM L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.30e-01 -0.106 0.169 0.921 CD4_TEM L2
ENSG00000162607 USP1 470425 sc-eQTL 4.00e-01 0.135 0.16 0.921 CD4_TEM L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 6.67e-01 0.0754 0.175 0.921 CD4_TEM L2
ENSG00000079739 PGM1 -686689 sc-eQTL 6.01e-01 -0.0817 0.156 0.921 CD8_CTL L2
ENSG00000088035 ALG6 -460853 sc-eQTL 8.81e-01 0.0248 0.166 0.921 CD8_CTL L2
ENSG00000116641 DOCK7 218336 sc-eQTL 9.41e-01 -0.0116 0.158 0.921 CD8_CTL L2
ENSG00000125703 ATG4C 122590 sc-eQTL 1.94e-02 0.39 0.166 0.921 CD8_CTL L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.28e-02 -0.337 0.173 0.921 CD8_CTL L2
ENSG00000162607 USP1 470425 sc-eQTL 6.98e-01 -0.0607 0.156 0.921 CD8_CTL L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 5.04e-01 -0.119 0.178 0.921 CD8_CTL L2
ENSG00000079739 PGM1 -686689 sc-eQTL 1.09e-01 0.258 0.16 0.921 CD8_Naive L2
ENSG00000088035 ALG6 -460853 sc-eQTL 7.19e-01 -0.0601 0.167 0.921 CD8_Naive L2
ENSG00000116641 DOCK7 218336 sc-eQTL 6.45e-01 -0.0794 0.172 0.921 CD8_Naive L2
ENSG00000125703 ATG4C 122590 sc-eQTL 1.17e-01 0.259 0.165 0.921 CD8_Naive L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.42e-01 -0.0334 0.168 0.921 CD8_Naive L2
ENSG00000162607 USP1 470425 sc-eQTL 6.51e-01 0.0641 0.142 0.921 CD8_Naive L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 6.02e-01 0.0825 0.158 0.921 CD8_Naive L2
ENSG00000079739 PGM1 -686689 sc-eQTL 8.82e-01 0.0261 0.175 0.921 CD8_TCM L2
ENSG00000088035 ALG6 -460853 sc-eQTL 4.66e-01 -0.129 0.177 0.921 CD8_TCM L2
ENSG00000116641 DOCK7 218336 sc-eQTL 7.16e-01 0.0631 0.173 0.921 CD8_TCM L2
ENSG00000125703 ATG4C 122590 sc-eQTL 3.74e-01 -0.157 0.177 0.921 CD8_TCM L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.08e-02 -0.335 0.17 0.921 CD8_TCM L2
ENSG00000162607 USP1 470425 sc-eQTL 7.82e-02 0.291 0.164 0.921 CD8_TCM L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 3.49e-02 0.368 0.173 0.921 CD8_TCM L2
ENSG00000079739 PGM1 -686689 sc-eQTL 3.02e-01 0.183 0.177 0.922 CD8_TEM L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.72e-01 0.101 0.178 0.922 CD8_TEM L2
ENSG00000116641 DOCK7 218336 sc-eQTL 1.36e-01 0.257 0.172 0.922 CD8_TEM L2
ENSG00000125703 ATG4C 122590 sc-eQTL 7.56e-01 0.0517 0.166 0.922 CD8_TEM L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 4.65e-01 0.131 0.18 0.922 CD8_TEM L2
ENSG00000162607 USP1 470425 sc-eQTL 4.81e-01 0.121 0.171 0.922 CD8_TEM L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 6.04e-01 -0.0905 0.174 0.922 CD8_TEM L2
ENSG00000079739 PGM1 -686689 sc-eQTL 3.62e-01 -0.154 0.169 0.92 MAIT L2
ENSG00000088035 ALG6 -460853 sc-eQTL 9.37e-01 -0.0133 0.167 0.92 MAIT L2
ENSG00000116641 DOCK7 218336 sc-eQTL 1.30e-01 0.242 0.16 0.92 MAIT L2
ENSG00000125703 ATG4C 122590 sc-eQTL 3.75e-01 -0.15 0.169 0.92 MAIT L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 7.26e-01 -0.0594 0.169 0.92 MAIT L2
ENSG00000162607 USP1 470425 sc-eQTL 7.02e-01 -0.0644 0.168 0.92 MAIT L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 7.35e-01 0.0591 0.175 0.92 MAIT L2
ENSG00000079739 PGM1 -686689 sc-eQTL 5.17e-01 -0.11 0.169 0.922 NK_CD56bright L2
ENSG00000088035 ALG6 -460853 sc-eQTL 6.06e-01 0.0895 0.173 0.922 NK_CD56bright L2
ENSG00000116641 DOCK7 218336 sc-eQTL 1.67e-01 -0.207 0.15 0.922 NK_CD56bright L2
ENSG00000125703 ATG4C 122590 sc-eQTL 5.19e-01 -0.108 0.168 0.922 NK_CD56bright L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.21e-01 -0.112 0.175 0.922 NK_CD56bright L2
ENSG00000162607 USP1 470425 sc-eQTL 3.76e-01 -0.16 0.18 0.922 NK_CD56bright L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 8.33e-01 0.0364 0.172 0.922 NK_CD56bright L2
ENSG00000079739 PGM1 -686689 sc-eQTL 8.78e-01 0.0208 0.135 0.92 NK_CD56dim L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.76e-01 0.0957 0.171 0.92 NK_CD56dim L2
ENSG00000116641 DOCK7 218336 sc-eQTL 4.25e-01 0.119 0.149 0.92 NK_CD56dim L2
ENSG00000125703 ATG4C 122590 sc-eQTL 2.83e-01 0.162 0.151 0.92 NK_CD56dim L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 3.91e-02 -0.353 0.17 0.92 NK_CD56dim L2
ENSG00000162607 USP1 470425 sc-eQTL 5.47e-01 0.101 0.167 0.92 NK_CD56dim L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.58e-01 -0.138 0.185 0.92 NK_CD56dim L2
ENSG00000079739 PGM1 -686689 sc-eQTL 1.09e-01 0.287 0.178 0.92 NK_HLA L2
ENSG00000088035 ALG6 -460853 sc-eQTL 4.84e-02 0.366 0.184 0.92 NK_HLA L2
ENSG00000116641 DOCK7 218336 sc-eQTL 7.59e-01 -0.0437 0.142 0.92 NK_HLA L2
ENSG00000125703 ATG4C 122590 sc-eQTL 3.81e-01 0.145 0.165 0.92 NK_HLA L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 2.91e-01 -0.183 0.173 0.92 NK_HLA L2
ENSG00000162607 USP1 470425 sc-eQTL 4.80e-01 -0.129 0.182 0.92 NK_HLA L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 4.53e-01 0.124 0.165 0.92 NK_HLA L2
ENSG00000079739 PGM1 -686689 sc-eQTL 1.99e-01 0.185 0.143 0.92 NK_cytokine L2
ENSG00000088035 ALG6 -460853 sc-eQTL 9.82e-02 0.268 0.162 0.92 NK_cytokine L2
ENSG00000116641 DOCK7 218336 sc-eQTL 4.66e-01 -0.11 0.15 0.92 NK_cytokine L2
ENSG00000125703 ATG4C 122590 sc-eQTL 2.99e-01 0.16 0.154 0.92 NK_cytokine L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 3.91e-01 -0.137 0.159 0.92 NK_cytokine L2
ENSG00000162607 USP1 470425 sc-eQTL 6.57e-01 -0.0747 0.168 0.92 NK_cytokine L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 2.02e-01 0.217 0.169 0.92 NK_cytokine L2
ENSG00000079739 PGM1 -686689 sc-eQTL 2.13e-01 -0.27 0.216 0.937 PB L2
ENSG00000088035 ALG6 -460853 sc-eQTL 3.87e-01 0.197 0.227 0.937 PB L2
ENSG00000116641 DOCK7 218336 sc-eQTL 7.02e-01 0.0936 0.244 0.937 PB L2
ENSG00000125703 ATG4C 122590 sc-eQTL 5.38e-01 0.131 0.212 0.937 PB L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 2.44e-01 -0.247 0.211 0.937 PB L2
ENSG00000162607 USP1 470425 sc-eQTL 1.27e-01 0.322 0.209 0.937 PB L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 2.68e-01 -0.258 0.232 0.937 PB L2
ENSG00000079739 PGM1 -686689 sc-eQTL 9.62e-01 0.00739 0.156 0.92 Pro_T L2
ENSG00000088035 ALG6 -460853 sc-eQTL 6.58e-01 -0.0701 0.158 0.92 Pro_T L2
ENSG00000116641 DOCK7 218336 sc-eQTL 7.76e-01 0.0453 0.159 0.92 Pro_T L2
ENSG00000125703 ATG4C 122590 sc-eQTL 6.95e-01 -0.0545 0.139 0.92 Pro_T L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 9.53e-01 0.00833 0.14 0.92 Pro_T L2
ENSG00000162607 USP1 470425 sc-eQTL 7.91e-01 0.0255 0.096 0.92 Pro_T L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 7.49e-01 -0.0519 0.162 0.92 Pro_T L2
ENSG00000079739 PGM1 -686689 sc-eQTL 7.43e-01 -0.0546 0.166 0.921 Treg L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.29e-01 -0.112 0.178 0.921 Treg L2
ENSG00000116641 DOCK7 218336 sc-eQTL 3.69e-01 -0.147 0.163 0.921 Treg L2
ENSG00000125703 ATG4C 122590 sc-eQTL 3.08e-01 0.17 0.166 0.921 Treg L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 2.03e-01 0.222 0.174 0.921 Treg L2
ENSG00000162607 USP1 470425 sc-eQTL 7.28e-01 0.0588 0.169 0.921 Treg L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 2.70e-01 -0.184 0.166 0.921 Treg L2
ENSG00000079739 PGM1 -686689 sc-eQTL 5.81e-01 -0.0902 0.163 0.915 cDC L2
ENSG00000088035 ALG6 -460853 sc-eQTL 7.93e-01 -0.0434 0.165 0.915 cDC L2
ENSG00000116641 DOCK7 218336 sc-eQTL 3.29e-01 0.159 0.162 0.915 cDC L2
ENSG00000125703 ATG4C 122590 sc-eQTL 6.13e-01 0.0714 0.141 0.915 cDC L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 6.83e-01 0.073 0.179 0.915 cDC L2
ENSG00000162607 USP1 470425 sc-eQTL 4.87e-01 -0.111 0.159 0.915 cDC L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 1.73e-01 -0.196 0.143 0.915 cDC L2
ENSG00000079739 PGM1 -686689 sc-eQTL 2.21e-01 -0.193 0.157 0.921 cMono_IL1B L2
ENSG00000088035 ALG6 -460853 sc-eQTL 4.77e-02 -0.311 0.156 0.921 cMono_IL1B L2
ENSG00000116641 DOCK7 218336 sc-eQTL 4.64e-01 0.122 0.166 0.921 cMono_IL1B L2
ENSG00000125703 ATG4C 122590 sc-eQTL 5.40e-01 0.0717 0.117 0.921 cMono_IL1B L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.58e-01 -0.0296 0.165 0.921 cMono_IL1B L2
ENSG00000162607 USP1 470425 sc-eQTL 2.77e-01 0.159 0.145 0.921 cMono_IL1B L2
ENSG00000240563 L1TD1 711873 sc-eQTL 4.00e-01 0.123 0.146 0.921 cMono_IL1B L2
ENSG00000079739 PGM1 -686689 sc-eQTL 2.89e-01 -0.185 0.174 0.921 cMono_S100A L2
ENSG00000088035 ALG6 -460853 sc-eQTL 2.71e-03 -0.524 0.173 0.921 cMono_S100A L2
ENSG00000116641 DOCK7 218336 sc-eQTL 4.87e-01 -0.114 0.163 0.921 cMono_S100A L2
ENSG00000125703 ATG4C 122590 sc-eQTL 4.23e-01 0.114 0.141 0.921 cMono_S100A L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 9.08e-01 0.0185 0.16 0.921 cMono_S100A L2
ENSG00000162607 USP1 470425 sc-eQTL 5.48e-01 -0.0989 0.164 0.921 cMono_S100A L2
ENSG00000240563 L1TD1 711873 sc-eQTL 5.64e-01 0.0789 0.137 0.921 cMono_S100A L2
ENSG00000079739 PGM1 -686689 sc-eQTL 5.31e-01 0.117 0.186 0.915 gdT L2
ENSG00000088035 ALG6 -460853 sc-eQTL 4.83e-01 -0.139 0.198 0.915 gdT L2
ENSG00000116641 DOCK7 218336 sc-eQTL 6.81e-01 -0.0802 0.195 0.915 gdT L2
ENSG00000125703 ATG4C 122590 sc-eQTL 4.10e-01 -0.153 0.186 0.915 gdT L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 4.42e-01 -0.152 0.197 0.915 gdT L2
ENSG00000162607 USP1 470425 sc-eQTL 1.96e-01 0.242 0.186 0.915 gdT L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 3.17e-01 -0.195 0.194 0.915 gdT L2
ENSG00000079739 PGM1 -686689 sc-eQTL 8.12e-01 0.0418 0.175 0.922 intMono L2
ENSG00000088035 ALG6 -460853 sc-eQTL 9.48e-01 -0.0107 0.163 0.922 intMono L2
ENSG00000116641 DOCK7 218336 sc-eQTL 5.55e-01 0.0986 0.167 0.922 intMono L2
ENSG00000125703 ATG4C 122590 sc-eQTL 1.12e-01 0.253 0.158 0.922 intMono L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 6.33e-01 -0.0837 0.175 0.922 intMono L2
ENSG00000162607 USP1 470425 sc-eQTL 4.75e-02 -0.352 0.177 0.922 intMono L2
ENSG00000240563 L1TD1 711873 sc-eQTL 6.90e-01 -0.0523 0.131 0.922 intMono L2
ENSG00000079739 PGM1 -686689 sc-eQTL 7.81e-01 -0.0427 0.153 0.916 ncMono L2
ENSG00000088035 ALG6 -460853 sc-eQTL 3.79e-01 0.148 0.168 0.916 ncMono L2
ENSG00000116641 DOCK7 218336 sc-eQTL 3.95e-01 -0.141 0.166 0.916 ncMono L2
ENSG00000125703 ATG4C 122590 sc-eQTL 6.04e-01 -0.0806 0.155 0.916 ncMono L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 5.25e-01 -0.103 0.162 0.916 ncMono L2
ENSG00000162607 USP1 470425 sc-eQTL 6.91e-01 -0.0659 0.166 0.916 ncMono L2
ENSG00000240563 L1TD1 711873 sc-eQTL 5.05e-01 -0.0784 0.117 0.916 ncMono L2
ENSG00000079739 PGM1 -686689 sc-eQTL 9.79e-01 0.00471 0.179 0.91 pDC L2
ENSG00000088035 ALG6 -460853 sc-eQTL 5.64e-01 0.101 0.175 0.91 pDC L2
ENSG00000116641 DOCK7 218336 sc-eQTL 2.59e-01 0.202 0.178 0.91 pDC L2
ENSG00000125703 ATG4C 122590 sc-eQTL 5.57e-01 0.0941 0.16 0.91 pDC L2
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.99e-02 0.304 0.178 0.91 pDC L2
ENSG00000162607 USP1 470425 sc-eQTL 7.40e-01 0.0609 0.183 0.91 pDC L2
ENSG00000203965 EFCAB7 -616650 sc-eQTL 9.01e-01 -0.0198 0.159 0.91 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -686689 sc-eQTL 7.69e-01 -0.0468 0.159 0.921 B_Memory LOneK1K
ENSG00000088035 ALG6 -460853 sc-eQTL 9.29e-01 -0.0157 0.176 0.921 B_Memory LOneK1K
ENSG00000116641 DOCK7 218336 sc-eQTL 4.27e-01 -0.121 0.152 0.921 B_Memory LOneK1K
ENSG00000125703 ATG4C 122590 sc-eQTL 9.76e-01 0.00364 0.123 0.921 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -686999 sc-eQTL 7.02e-01 -0.0621 0.162 0.921 B_Memory LOneK1K
ENSG00000162607 USP1 470425 sc-eQTL 2.29e-02 0.356 0.156 0.921 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -616650 sc-eQTL 3.34e-01 0.163 0.169 0.921 B_Memory LOneK1K
ENSG00000079739 PGM1 -686689 sc-eQTL 4.98e-02 -0.326 0.165 0.921 B_Naive LOneK1K
ENSG00000088035 ALG6 -460853 sc-eQTL 9.24e-01 -0.0164 0.172 0.921 B_Naive LOneK1K
ENSG00000116641 DOCK7 218336 sc-eQTL 4.46e-01 -0.122 0.16 0.921 B_Naive LOneK1K
ENSG00000125703 ATG4C 122590 sc-eQTL 5.25e-01 0.0777 0.122 0.921 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.95e-01 0.0229 0.173 0.921 B_Naive LOneK1K
ENSG00000162607 USP1 470425 sc-eQTL 3.61e-02 -0.31 0.147 0.921 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -616650 sc-eQTL 8.44e-01 0.0343 0.174 0.921 B_Naive LOneK1K
ENSG00000079739 PGM1 -686689 sc-eQTL 1.21e-01 -0.249 0.16 0.921 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -460853 sc-eQTL 1.24e-03 -0.498 0.152 0.921 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 218336 sc-eQTL 7.40e-01 0.0521 0.157 0.921 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 122590 sc-eQTL 5.49e-01 0.0651 0.108 0.921 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -686999 sc-eQTL 9.43e-01 0.0115 0.161 0.921 CD14_Mono LOneK1K
ENSG00000162607 USP1 470425 sc-eQTL 5.98e-01 0.0723 0.137 0.921 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 711873 sc-eQTL 2.02e-01 0.189 0.148 0.921 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -686689 sc-eQTL 9.36e-01 0.0121 0.151 0.92 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -460853 sc-eQTL 3.49e-01 0.16 0.171 0.92 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 218336 sc-eQTL 6.18e-01 -0.0845 0.169 0.92 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 122590 sc-eQTL 3.26e-01 0.142 0.144 0.92 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -686999 sc-eQTL 3.85e-01 -0.146 0.167 0.92 CD16_Mono LOneK1K
ENSG00000162607 USP1 470425 sc-eQTL 3.29e-01 -0.154 0.157 0.92 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 711873 sc-eQTL 3.81e-01 -0.0941 0.107 0.92 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -686689 sc-eQTL 7.75e-02 0.231 0.13 0.92 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -460853 sc-eQTL 1.31e-01 0.237 0.156 0.92 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 218336 sc-eQTL 9.02e-01 -0.0173 0.141 0.92 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 122590 sc-eQTL 3.69e-02 0.292 0.139 0.92 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -686999 sc-eQTL 8.14e-02 -0.29 0.165 0.92 NK_CD56dim LOneK1K
ENSG00000162607 USP1 470425 sc-eQTL 7.54e-01 -0.0475 0.151 0.92 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -616650 sc-eQTL 9.06e-01 -0.0217 0.184 0.92 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 218354 eQTL 0.00463 0.103 0.0362 0.0 0.0 0.0962
ENSG00000125703 ATG4C 122590 eQTL 0.0368 0.0576 0.0275 0.0 0.0 0.0962

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina