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Genes within 1Mb (chr1:62902316:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -691095 sc-eQTL 2.30e-01 -0.172 0.143 0.921 B L1
ENSG00000088035 ALG6 -465259 sc-eQTL 9.97e-01 0.000571 0.149 0.921 B L1
ENSG00000116641 DOCK7 213930 sc-eQTL 1.66e-01 -0.206 0.148 0.921 B L1
ENSG00000125703 ATG4C 118184 sc-eQTL 6.22e-01 0.051 0.103 0.921 B L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 7.03e-01 -0.0628 0.164 0.921 B L1
ENSG00000162607 USP1 466019 sc-eQTL 7.46e-01 -0.0462 0.143 0.921 B L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.94e-01 0.115 0.168 0.921 B L1
ENSG00000079739 PGM1 -691095 sc-eQTL 6.19e-02 -0.233 0.124 0.921 CD4T L1
ENSG00000088035 ALG6 -465259 sc-eQTL 8.30e-01 0.0298 0.138 0.921 CD4T L1
ENSG00000116641 DOCK7 213930 sc-eQTL 1.04e-01 -0.227 0.139 0.921 CD4T L1
ENSG00000125703 ATG4C 118184 sc-eQTL 6.96e-02 -0.204 0.112 0.921 CD4T L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 6.43e-01 -0.0745 0.16 0.921 CD4T L1
ENSG00000162607 USP1 466019 sc-eQTL 8.18e-01 0.0253 0.11 0.921 CD4T L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 2.88e-01 -0.153 0.144 0.921 CD4T L1
ENSG00000079739 PGM1 -691095 sc-eQTL 6.14e-01 -0.0695 0.138 0.921 CD8T L1
ENSG00000088035 ALG6 -465259 sc-eQTL 9.59e-01 -0.00783 0.152 0.921 CD8T L1
ENSG00000116641 DOCK7 213930 sc-eQTL 6.29e-01 0.0745 0.154 0.921 CD8T L1
ENSG00000125703 ATG4C 118184 sc-eQTL 4.90e-02 0.287 0.145 0.921 CD8T L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 1.23e-01 -0.252 0.163 0.921 CD8T L1
ENSG00000162607 USP1 466019 sc-eQTL 5.28e-01 0.0804 0.127 0.921 CD8T L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.56e-01 0.121 0.163 0.921 CD8T L1
ENSG00000079739 PGM1 -691095 sc-eQTL 8.21e-01 -0.0341 0.15 0.919 DC L1
ENSG00000088035 ALG6 -465259 sc-eQTL 9.12e-01 -0.0172 0.155 0.919 DC L1
ENSG00000116641 DOCK7 213930 sc-eQTL 2.38e-01 0.187 0.158 0.919 DC L1
ENSG00000125703 ATG4C 118184 sc-eQTL 2.65e-01 0.138 0.124 0.919 DC L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 2.05e-01 0.22 0.173 0.919 DC L1
ENSG00000162607 USP1 466019 sc-eQTL 4.77e-01 0.108 0.152 0.919 DC L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.59e-01 -0.112 0.151 0.919 DC L1
ENSG00000079739 PGM1 -691095 sc-eQTL 2.66e-01 -0.167 0.149 0.921 Mono L1
ENSG00000088035 ALG6 -465259 sc-eQTL 1.87e-02 -0.366 0.154 0.921 Mono L1
ENSG00000116641 DOCK7 213930 sc-eQTL 9.39e-01 -0.0115 0.151 0.921 Mono L1
ENSG00000125703 ATG4C 118184 sc-eQTL 2.81e-01 0.11 0.102 0.921 Mono L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.21e-01 -0.104 0.161 0.921 Mono L1
ENSG00000162607 USP1 466019 sc-eQTL 4.49e-01 0.1 0.132 0.921 Mono L1
ENSG00000240563 L1TD1 707467 sc-eQTL 7.05e-01 -0.0468 0.124 0.921 Mono L1
ENSG00000079739 PGM1 -691095 sc-eQTL 9.99e-02 0.211 0.127 0.921 NK L1
ENSG00000088035 ALG6 -465259 sc-eQTL 7.59e-02 0.266 0.149 0.921 NK L1
ENSG00000116641 DOCK7 213930 sc-eQTL 6.51e-01 -0.0561 0.124 0.921 NK L1
ENSG00000125703 ATG4C 118184 sc-eQTL 3.12e-02 0.285 0.131 0.921 NK L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 1.34e-01 -0.247 0.164 0.921 NK L1
ENSG00000162607 USP1 466019 sc-eQTL 9.95e-01 -0.000984 0.148 0.921 NK L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 8.06e-01 -0.0442 0.179 0.921 NK L1
ENSG00000079739 PGM1 -691095 sc-eQTL 5.35e-01 -0.0896 0.144 0.921 Other_T L1
ENSG00000088035 ALG6 -465259 sc-eQTL 7.70e-01 0.0424 0.145 0.921 Other_T L1
ENSG00000116641 DOCK7 213930 sc-eQTL 7.05e-01 0.056 0.148 0.921 Other_T L1
ENSG00000125703 ATG4C 118184 sc-eQTL 7.62e-01 -0.0388 0.128 0.921 Other_T L1
ENSG00000142856 ITGB3BP -691405 sc-eQTL 7.87e-01 -0.0307 0.114 0.921 Other_T L1
ENSG00000162607 USP1 466019 sc-eQTL 1.18e-01 0.154 0.0979 0.921 Other_T L1
ENSG00000203965 EFCAB7 -621056 sc-eQTL 8.59e-01 -0.0313 0.175 0.921 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -691095 sc-eQTL 8.50e-01 -0.038 0.201 0.926 B_Activated L2
ENSG00000088035 ALG6 -465259 sc-eQTL 9.70e-01 0.00728 0.193 0.926 B_Activated L2
ENSG00000116641 DOCK7 213930 sc-eQTL 3.72e-01 -0.16 0.179 0.926 B_Activated L2
ENSG00000125703 ATG4C 118184 sc-eQTL 4.51e-01 0.142 0.189 0.926 B_Activated L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 2.60e-01 0.208 0.184 0.926 B_Activated L2
ENSG00000162607 USP1 466019 sc-eQTL 7.39e-01 0.0668 0.2 0.926 B_Activated L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 7.19e-01 -0.0629 0.175 0.926 B_Activated L2
ENSG00000079739 PGM1 -691095 sc-eQTL 4.32e-01 -0.134 0.171 0.921 B_Intermediate L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.09e-01 0.115 0.173 0.921 B_Intermediate L2
ENSG00000116641 DOCK7 213930 sc-eQTL 2.43e-01 -0.193 0.165 0.921 B_Intermediate L2
ENSG00000125703 ATG4C 118184 sc-eQTL 2.86e-01 0.15 0.14 0.921 B_Intermediate L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 3.49e-01 -0.156 0.167 0.921 B_Intermediate L2
ENSG00000162607 USP1 466019 sc-eQTL 1.43e-01 0.244 0.166 0.921 B_Intermediate L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 1.12e-01 0.263 0.165 0.921 B_Intermediate L2
ENSG00000079739 PGM1 -691095 sc-eQTL 5.87e-01 0.0909 0.167 0.92 B_Memory L2
ENSG00000088035 ALG6 -465259 sc-eQTL 3.38e-01 -0.163 0.17 0.92 B_Memory L2
ENSG00000116641 DOCK7 213930 sc-eQTL 7.84e-01 -0.0438 0.159 0.92 B_Memory L2
ENSG00000125703 ATG4C 118184 sc-eQTL 1.19e-01 -0.236 0.151 0.92 B_Memory L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 6.38e-01 0.0816 0.173 0.92 B_Memory L2
ENSG00000162607 USP1 466019 sc-eQTL 9.84e-02 0.289 0.174 0.92 B_Memory L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 7.11e-01 -0.0638 0.172 0.92 B_Memory L2
ENSG00000079739 PGM1 -691095 sc-eQTL 4.23e-02 -0.345 0.169 0.921 B_Naive1 L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.50e-01 -0.102 0.171 0.921 B_Naive1 L2
ENSG00000116641 DOCK7 213930 sc-eQTL 6.19e-01 -0.0818 0.164 0.921 B_Naive1 L2
ENSG00000125703 ATG4C 118184 sc-eQTL 4.46e-01 0.0965 0.126 0.921 B_Naive1 L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.26e-01 0.106 0.168 0.921 B_Naive1 L2
ENSG00000162607 USP1 466019 sc-eQTL 7.54e-02 -0.262 0.146 0.921 B_Naive1 L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.65e-01 0.131 0.179 0.921 B_Naive1 L2
ENSG00000079739 PGM1 -691095 sc-eQTL 1.95e-01 -0.221 0.17 0.921 B_Naive2 L2
ENSG00000088035 ALG6 -465259 sc-eQTL 8.36e-01 0.0369 0.178 0.921 B_Naive2 L2
ENSG00000116641 DOCK7 213930 sc-eQTL 8.73e-01 -0.0273 0.171 0.921 B_Naive2 L2
ENSG00000125703 ATG4C 118184 sc-eQTL 9.52e-01 -0.00996 0.165 0.921 B_Naive2 L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 4.35e-01 -0.14 0.178 0.921 B_Naive2 L2
ENSG00000162607 USP1 466019 sc-eQTL 3.13e-01 -0.172 0.17 0.921 B_Naive2 L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 6.10e-01 -0.0906 0.178 0.921 B_Naive2 L2
ENSG00000079739 PGM1 -691095 sc-eQTL 4.55e-01 -0.13 0.173 0.92 CD4_CTL L2
ENSG00000088035 ALG6 -465259 sc-eQTL 6.64e-01 -0.0799 0.183 0.92 CD4_CTL L2
ENSG00000116641 DOCK7 213930 sc-eQTL 9.40e-01 -0.0121 0.16 0.92 CD4_CTL L2
ENSG00000125703 ATG4C 118184 sc-eQTL 4.11e-01 0.136 0.166 0.92 CD4_CTL L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.63e-01 0.0307 0.177 0.92 CD4_CTL L2
ENSG00000162607 USP1 466019 sc-eQTL 9.42e-01 0.0124 0.169 0.92 CD4_CTL L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 1.37e-02 -0.413 0.166 0.92 CD4_CTL L2
ENSG00000079739 PGM1 -691095 sc-eQTL 9.02e-02 -0.236 0.139 0.921 CD4_Naive L2
ENSG00000088035 ALG6 -465259 sc-eQTL 2.74e-01 0.166 0.151 0.921 CD4_Naive L2
ENSG00000116641 DOCK7 213930 sc-eQTL 8.57e-02 -0.256 0.148 0.921 CD4_Naive L2
ENSG00000125703 ATG4C 118184 sc-eQTL 3.54e-01 -0.122 0.132 0.921 CD4_Naive L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.49e-01 -0.0306 0.161 0.921 CD4_Naive L2
ENSG00000162607 USP1 466019 sc-eQTL 8.17e-01 0.0285 0.123 0.921 CD4_Naive L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 5.05e-01 -0.107 0.16 0.921 CD4_Naive L2
ENSG00000079739 PGM1 -691095 sc-eQTL 5.17e-01 -0.0945 0.146 0.921 CD4_TCM L2
ENSG00000088035 ALG6 -465259 sc-eQTL 1.44e-01 -0.247 0.168 0.921 CD4_TCM L2
ENSG00000116641 DOCK7 213930 sc-eQTL 4.60e-01 -0.111 0.15 0.921 CD4_TCM L2
ENSG00000125703 ATG4C 118184 sc-eQTL 2.75e-01 -0.16 0.146 0.921 CD4_TCM L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 1.81e-01 -0.23 0.172 0.921 CD4_TCM L2
ENSG00000162607 USP1 466019 sc-eQTL 6.38e-01 0.0665 0.141 0.921 CD4_TCM L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 8.07e-01 -0.0408 0.167 0.921 CD4_TCM L2
ENSG00000079739 PGM1 -691095 sc-eQTL 1.07e-01 -0.277 0.171 0.921 CD4_TEM L2
ENSG00000088035 ALG6 -465259 sc-eQTL 3.80e-01 -0.152 0.173 0.921 CD4_TEM L2
ENSG00000116641 DOCK7 213930 sc-eQTL 2.35e-01 -0.2 0.168 0.921 CD4_TEM L2
ENSG00000125703 ATG4C 118184 sc-eQTL 2.00e-01 -0.21 0.163 0.921 CD4_TEM L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.30e-01 -0.106 0.169 0.921 CD4_TEM L2
ENSG00000162607 USP1 466019 sc-eQTL 4.00e-01 0.135 0.16 0.921 CD4_TEM L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 6.67e-01 0.0754 0.175 0.921 CD4_TEM L2
ENSG00000079739 PGM1 -691095 sc-eQTL 6.01e-01 -0.0817 0.156 0.921 CD8_CTL L2
ENSG00000088035 ALG6 -465259 sc-eQTL 8.81e-01 0.0248 0.166 0.921 CD8_CTL L2
ENSG00000116641 DOCK7 213930 sc-eQTL 9.41e-01 -0.0116 0.158 0.921 CD8_CTL L2
ENSG00000125703 ATG4C 118184 sc-eQTL 1.94e-02 0.39 0.166 0.921 CD8_CTL L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.28e-02 -0.337 0.173 0.921 CD8_CTL L2
ENSG00000162607 USP1 466019 sc-eQTL 6.98e-01 -0.0607 0.156 0.921 CD8_CTL L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 5.04e-01 -0.119 0.178 0.921 CD8_CTL L2
ENSG00000079739 PGM1 -691095 sc-eQTL 1.09e-01 0.258 0.16 0.921 CD8_Naive L2
ENSG00000088035 ALG6 -465259 sc-eQTL 7.19e-01 -0.0601 0.167 0.921 CD8_Naive L2
ENSG00000116641 DOCK7 213930 sc-eQTL 6.45e-01 -0.0794 0.172 0.921 CD8_Naive L2
ENSG00000125703 ATG4C 118184 sc-eQTL 1.17e-01 0.259 0.165 0.921 CD8_Naive L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.42e-01 -0.0334 0.168 0.921 CD8_Naive L2
ENSG00000162607 USP1 466019 sc-eQTL 6.51e-01 0.0641 0.142 0.921 CD8_Naive L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 6.02e-01 0.0825 0.158 0.921 CD8_Naive L2
ENSG00000079739 PGM1 -691095 sc-eQTL 8.82e-01 0.0261 0.175 0.921 CD8_TCM L2
ENSG00000088035 ALG6 -465259 sc-eQTL 4.66e-01 -0.129 0.177 0.921 CD8_TCM L2
ENSG00000116641 DOCK7 213930 sc-eQTL 7.16e-01 0.0631 0.173 0.921 CD8_TCM L2
ENSG00000125703 ATG4C 118184 sc-eQTL 3.74e-01 -0.157 0.177 0.921 CD8_TCM L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.08e-02 -0.335 0.17 0.921 CD8_TCM L2
ENSG00000162607 USP1 466019 sc-eQTL 7.82e-02 0.291 0.164 0.921 CD8_TCM L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 3.49e-02 0.368 0.173 0.921 CD8_TCM L2
ENSG00000079739 PGM1 -691095 sc-eQTL 3.02e-01 0.183 0.177 0.922 CD8_TEM L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.72e-01 0.101 0.178 0.922 CD8_TEM L2
ENSG00000116641 DOCK7 213930 sc-eQTL 1.36e-01 0.257 0.172 0.922 CD8_TEM L2
ENSG00000125703 ATG4C 118184 sc-eQTL 7.56e-01 0.0517 0.166 0.922 CD8_TEM L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 4.65e-01 0.131 0.18 0.922 CD8_TEM L2
ENSG00000162607 USP1 466019 sc-eQTL 4.81e-01 0.121 0.171 0.922 CD8_TEM L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 6.04e-01 -0.0905 0.174 0.922 CD8_TEM L2
ENSG00000079739 PGM1 -691095 sc-eQTL 3.62e-01 -0.154 0.169 0.92 MAIT L2
ENSG00000088035 ALG6 -465259 sc-eQTL 9.37e-01 -0.0133 0.167 0.92 MAIT L2
ENSG00000116641 DOCK7 213930 sc-eQTL 1.30e-01 0.242 0.16 0.92 MAIT L2
ENSG00000125703 ATG4C 118184 sc-eQTL 3.75e-01 -0.15 0.169 0.92 MAIT L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 7.26e-01 -0.0594 0.169 0.92 MAIT L2
ENSG00000162607 USP1 466019 sc-eQTL 7.02e-01 -0.0644 0.168 0.92 MAIT L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 7.35e-01 0.0591 0.175 0.92 MAIT L2
ENSG00000079739 PGM1 -691095 sc-eQTL 5.17e-01 -0.11 0.169 0.922 NK_CD56bright L2
ENSG00000088035 ALG6 -465259 sc-eQTL 6.06e-01 0.0895 0.173 0.922 NK_CD56bright L2
ENSG00000116641 DOCK7 213930 sc-eQTL 1.67e-01 -0.207 0.15 0.922 NK_CD56bright L2
ENSG00000125703 ATG4C 118184 sc-eQTL 5.19e-01 -0.108 0.168 0.922 NK_CD56bright L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.21e-01 -0.112 0.175 0.922 NK_CD56bright L2
ENSG00000162607 USP1 466019 sc-eQTL 3.76e-01 -0.16 0.18 0.922 NK_CD56bright L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 8.33e-01 0.0364 0.172 0.922 NK_CD56bright L2
ENSG00000079739 PGM1 -691095 sc-eQTL 8.78e-01 0.0208 0.135 0.92 NK_CD56dim L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.76e-01 0.0957 0.171 0.92 NK_CD56dim L2
ENSG00000116641 DOCK7 213930 sc-eQTL 4.25e-01 0.119 0.149 0.92 NK_CD56dim L2
ENSG00000125703 ATG4C 118184 sc-eQTL 2.83e-01 0.162 0.151 0.92 NK_CD56dim L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 3.91e-02 -0.353 0.17 0.92 NK_CD56dim L2
ENSG00000162607 USP1 466019 sc-eQTL 5.47e-01 0.101 0.167 0.92 NK_CD56dim L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.58e-01 -0.138 0.185 0.92 NK_CD56dim L2
ENSG00000079739 PGM1 -691095 sc-eQTL 1.09e-01 0.287 0.178 0.92 NK_HLA L2
ENSG00000088035 ALG6 -465259 sc-eQTL 4.84e-02 0.366 0.184 0.92 NK_HLA L2
ENSG00000116641 DOCK7 213930 sc-eQTL 7.59e-01 -0.0437 0.142 0.92 NK_HLA L2
ENSG00000125703 ATG4C 118184 sc-eQTL 3.81e-01 0.145 0.165 0.92 NK_HLA L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 2.91e-01 -0.183 0.173 0.92 NK_HLA L2
ENSG00000162607 USP1 466019 sc-eQTL 4.80e-01 -0.129 0.182 0.92 NK_HLA L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 4.53e-01 0.124 0.165 0.92 NK_HLA L2
ENSG00000079739 PGM1 -691095 sc-eQTL 1.99e-01 0.185 0.143 0.92 NK_cytokine L2
ENSG00000088035 ALG6 -465259 sc-eQTL 9.82e-02 0.268 0.162 0.92 NK_cytokine L2
ENSG00000116641 DOCK7 213930 sc-eQTL 4.66e-01 -0.11 0.15 0.92 NK_cytokine L2
ENSG00000125703 ATG4C 118184 sc-eQTL 2.99e-01 0.16 0.154 0.92 NK_cytokine L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 3.91e-01 -0.137 0.159 0.92 NK_cytokine L2
ENSG00000162607 USP1 466019 sc-eQTL 6.57e-01 -0.0747 0.168 0.92 NK_cytokine L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 2.02e-01 0.217 0.169 0.92 NK_cytokine L2
ENSG00000079739 PGM1 -691095 sc-eQTL 2.13e-01 -0.27 0.216 0.937 PB L2
ENSG00000088035 ALG6 -465259 sc-eQTL 3.87e-01 0.197 0.227 0.937 PB L2
ENSG00000116641 DOCK7 213930 sc-eQTL 7.02e-01 0.0936 0.244 0.937 PB L2
ENSG00000125703 ATG4C 118184 sc-eQTL 5.38e-01 0.131 0.212 0.937 PB L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 2.44e-01 -0.247 0.211 0.937 PB L2
ENSG00000162607 USP1 466019 sc-eQTL 1.27e-01 0.322 0.209 0.937 PB L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 2.68e-01 -0.258 0.232 0.937 PB L2
ENSG00000079739 PGM1 -691095 sc-eQTL 9.62e-01 0.00739 0.156 0.92 Pro_T L2
ENSG00000088035 ALG6 -465259 sc-eQTL 6.58e-01 -0.0701 0.158 0.92 Pro_T L2
ENSG00000116641 DOCK7 213930 sc-eQTL 7.76e-01 0.0453 0.159 0.92 Pro_T L2
ENSG00000125703 ATG4C 118184 sc-eQTL 6.95e-01 -0.0545 0.139 0.92 Pro_T L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 9.53e-01 0.00833 0.14 0.92 Pro_T L2
ENSG00000162607 USP1 466019 sc-eQTL 7.91e-01 0.0255 0.096 0.92 Pro_T L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 7.49e-01 -0.0519 0.162 0.92 Pro_T L2
ENSG00000079739 PGM1 -691095 sc-eQTL 7.43e-01 -0.0546 0.166 0.921 Treg L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.29e-01 -0.112 0.178 0.921 Treg L2
ENSG00000116641 DOCK7 213930 sc-eQTL 3.69e-01 -0.147 0.163 0.921 Treg L2
ENSG00000125703 ATG4C 118184 sc-eQTL 3.08e-01 0.17 0.166 0.921 Treg L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 2.03e-01 0.222 0.174 0.921 Treg L2
ENSG00000162607 USP1 466019 sc-eQTL 7.28e-01 0.0588 0.169 0.921 Treg L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 2.70e-01 -0.184 0.166 0.921 Treg L2
ENSG00000079739 PGM1 -691095 sc-eQTL 5.81e-01 -0.0902 0.163 0.915 cDC L2
ENSG00000088035 ALG6 -465259 sc-eQTL 7.93e-01 -0.0434 0.165 0.915 cDC L2
ENSG00000116641 DOCK7 213930 sc-eQTL 3.29e-01 0.159 0.162 0.915 cDC L2
ENSG00000125703 ATG4C 118184 sc-eQTL 6.13e-01 0.0714 0.141 0.915 cDC L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 6.83e-01 0.073 0.179 0.915 cDC L2
ENSG00000162607 USP1 466019 sc-eQTL 4.87e-01 -0.111 0.159 0.915 cDC L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 1.73e-01 -0.196 0.143 0.915 cDC L2
ENSG00000079739 PGM1 -691095 sc-eQTL 2.21e-01 -0.193 0.157 0.921 cMono_IL1B L2
ENSG00000088035 ALG6 -465259 sc-eQTL 4.77e-02 -0.311 0.156 0.921 cMono_IL1B L2
ENSG00000116641 DOCK7 213930 sc-eQTL 4.64e-01 0.122 0.166 0.921 cMono_IL1B L2
ENSG00000125703 ATG4C 118184 sc-eQTL 5.40e-01 0.0717 0.117 0.921 cMono_IL1B L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.58e-01 -0.0296 0.165 0.921 cMono_IL1B L2
ENSG00000162607 USP1 466019 sc-eQTL 2.77e-01 0.159 0.145 0.921 cMono_IL1B L2
ENSG00000240563 L1TD1 707467 sc-eQTL 4.00e-01 0.123 0.146 0.921 cMono_IL1B L2
ENSG00000079739 PGM1 -691095 sc-eQTL 2.89e-01 -0.185 0.174 0.921 cMono_S100A L2
ENSG00000088035 ALG6 -465259 sc-eQTL 2.71e-03 -0.524 0.173 0.921 cMono_S100A L2
ENSG00000116641 DOCK7 213930 sc-eQTL 4.87e-01 -0.114 0.163 0.921 cMono_S100A L2
ENSG00000125703 ATG4C 118184 sc-eQTL 4.23e-01 0.114 0.141 0.921 cMono_S100A L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 9.08e-01 0.0185 0.16 0.921 cMono_S100A L2
ENSG00000162607 USP1 466019 sc-eQTL 5.48e-01 -0.0989 0.164 0.921 cMono_S100A L2
ENSG00000240563 L1TD1 707467 sc-eQTL 5.64e-01 0.0789 0.137 0.921 cMono_S100A L2
ENSG00000079739 PGM1 -691095 sc-eQTL 5.31e-01 0.117 0.186 0.915 gdT L2
ENSG00000088035 ALG6 -465259 sc-eQTL 4.83e-01 -0.139 0.198 0.915 gdT L2
ENSG00000116641 DOCK7 213930 sc-eQTL 6.81e-01 -0.0802 0.195 0.915 gdT L2
ENSG00000125703 ATG4C 118184 sc-eQTL 4.10e-01 -0.153 0.186 0.915 gdT L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 4.42e-01 -0.152 0.197 0.915 gdT L2
ENSG00000162607 USP1 466019 sc-eQTL 1.96e-01 0.242 0.186 0.915 gdT L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 3.17e-01 -0.195 0.194 0.915 gdT L2
ENSG00000079739 PGM1 -691095 sc-eQTL 8.12e-01 0.0418 0.175 0.922 intMono L2
ENSG00000088035 ALG6 -465259 sc-eQTL 9.48e-01 -0.0107 0.163 0.922 intMono L2
ENSG00000116641 DOCK7 213930 sc-eQTL 5.55e-01 0.0986 0.167 0.922 intMono L2
ENSG00000125703 ATG4C 118184 sc-eQTL 1.12e-01 0.253 0.158 0.922 intMono L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 6.33e-01 -0.0837 0.175 0.922 intMono L2
ENSG00000162607 USP1 466019 sc-eQTL 4.75e-02 -0.352 0.177 0.922 intMono L2
ENSG00000240563 L1TD1 707467 sc-eQTL 6.90e-01 -0.0523 0.131 0.922 intMono L2
ENSG00000079739 PGM1 -691095 sc-eQTL 7.81e-01 -0.0427 0.153 0.916 ncMono L2
ENSG00000088035 ALG6 -465259 sc-eQTL 3.79e-01 0.148 0.168 0.916 ncMono L2
ENSG00000116641 DOCK7 213930 sc-eQTL 3.95e-01 -0.141 0.166 0.916 ncMono L2
ENSG00000125703 ATG4C 118184 sc-eQTL 6.04e-01 -0.0806 0.155 0.916 ncMono L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 5.25e-01 -0.103 0.162 0.916 ncMono L2
ENSG00000162607 USP1 466019 sc-eQTL 6.91e-01 -0.0659 0.166 0.916 ncMono L2
ENSG00000240563 L1TD1 707467 sc-eQTL 5.05e-01 -0.0784 0.117 0.916 ncMono L2
ENSG00000079739 PGM1 -691095 sc-eQTL 9.79e-01 0.00471 0.179 0.91 pDC L2
ENSG00000088035 ALG6 -465259 sc-eQTL 5.64e-01 0.101 0.175 0.91 pDC L2
ENSG00000116641 DOCK7 213930 sc-eQTL 2.59e-01 0.202 0.178 0.91 pDC L2
ENSG00000125703 ATG4C 118184 sc-eQTL 5.57e-01 0.0941 0.16 0.91 pDC L2
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.99e-02 0.304 0.178 0.91 pDC L2
ENSG00000162607 USP1 466019 sc-eQTL 7.40e-01 0.0609 0.183 0.91 pDC L2
ENSG00000203965 EFCAB7 -621056 sc-eQTL 9.01e-01 -0.0198 0.159 0.91 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079739 PGM1 -691095 sc-eQTL 7.69e-01 -0.0468 0.159 0.921 B_Memory LOneK1K
ENSG00000088035 ALG6 -465259 sc-eQTL 9.29e-01 -0.0157 0.176 0.921 B_Memory LOneK1K
ENSG00000116641 DOCK7 213930 sc-eQTL 4.27e-01 -0.121 0.152 0.921 B_Memory LOneK1K
ENSG00000125703 ATG4C 118184 sc-eQTL 9.76e-01 0.00364 0.123 0.921 B_Memory LOneK1K
ENSG00000142856 ITGB3BP -691405 sc-eQTL 7.02e-01 -0.0621 0.162 0.921 B_Memory LOneK1K
ENSG00000162607 USP1 466019 sc-eQTL 2.29e-02 0.356 0.156 0.921 B_Memory LOneK1K
ENSG00000203965 EFCAB7 -621056 sc-eQTL 3.34e-01 0.163 0.169 0.921 B_Memory LOneK1K
ENSG00000079739 PGM1 -691095 sc-eQTL 4.98e-02 -0.326 0.165 0.921 B_Naive LOneK1K
ENSG00000088035 ALG6 -465259 sc-eQTL 9.24e-01 -0.0164 0.172 0.921 B_Naive LOneK1K
ENSG00000116641 DOCK7 213930 sc-eQTL 4.46e-01 -0.122 0.16 0.921 B_Naive LOneK1K
ENSG00000125703 ATG4C 118184 sc-eQTL 5.25e-01 0.0777 0.122 0.921 B_Naive LOneK1K
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.95e-01 0.0229 0.173 0.921 B_Naive LOneK1K
ENSG00000162607 USP1 466019 sc-eQTL 3.61e-02 -0.31 0.147 0.921 B_Naive LOneK1K
ENSG00000203965 EFCAB7 -621056 sc-eQTL 8.44e-01 0.0343 0.174 0.921 B_Naive LOneK1K
ENSG00000079739 PGM1 -691095 sc-eQTL 1.21e-01 -0.249 0.16 0.921 CD14_Mono LOneK1K
ENSG00000088035 ALG6 -465259 sc-eQTL 1.24e-03 -0.498 0.152 0.921 CD14_Mono LOneK1K
ENSG00000116641 DOCK7 213930 sc-eQTL 7.40e-01 0.0521 0.157 0.921 CD14_Mono LOneK1K
ENSG00000125703 ATG4C 118184 sc-eQTL 5.49e-01 0.0651 0.108 0.921 CD14_Mono LOneK1K
ENSG00000142856 ITGB3BP -691405 sc-eQTL 9.43e-01 0.0115 0.161 0.921 CD14_Mono LOneK1K
ENSG00000162607 USP1 466019 sc-eQTL 5.98e-01 0.0723 0.137 0.921 CD14_Mono LOneK1K
ENSG00000240563 L1TD1 707467 sc-eQTL 2.02e-01 0.189 0.148 0.921 CD14_Mono LOneK1K
ENSG00000079739 PGM1 -691095 sc-eQTL 9.36e-01 0.0121 0.151 0.92 CD16_Mono LOneK1K
ENSG00000088035 ALG6 -465259 sc-eQTL 3.49e-01 0.16 0.171 0.92 CD16_Mono LOneK1K
ENSG00000116641 DOCK7 213930 sc-eQTL 6.18e-01 -0.0845 0.169 0.92 CD16_Mono LOneK1K
ENSG00000125703 ATG4C 118184 sc-eQTL 3.26e-01 0.142 0.144 0.92 CD16_Mono LOneK1K
ENSG00000142856 ITGB3BP -691405 sc-eQTL 3.85e-01 -0.146 0.167 0.92 CD16_Mono LOneK1K
ENSG00000162607 USP1 466019 sc-eQTL 3.29e-01 -0.154 0.157 0.92 CD16_Mono LOneK1K
ENSG00000240563 L1TD1 707467 sc-eQTL 3.81e-01 -0.0941 0.107 0.92 CD16_Mono LOneK1K
ENSG00000079739 PGM1 -691095 sc-eQTL 7.75e-02 0.231 0.13 0.92 NK_CD56dim LOneK1K
ENSG00000088035 ALG6 -465259 sc-eQTL 1.31e-01 0.237 0.156 0.92 NK_CD56dim LOneK1K
ENSG00000116641 DOCK7 213930 sc-eQTL 9.02e-01 -0.0173 0.141 0.92 NK_CD56dim LOneK1K
ENSG00000125703 ATG4C 118184 sc-eQTL 3.69e-02 0.292 0.139 0.92 NK_CD56dim LOneK1K
ENSG00000142856 ITGB3BP -691405 sc-eQTL 8.14e-02 -0.29 0.165 0.92 NK_CD56dim LOneK1K
ENSG00000162607 USP1 466019 sc-eQTL 7.54e-01 -0.0475 0.151 0.92 NK_CD56dim LOneK1K
ENSG00000203965 EFCAB7 -621056 sc-eQTL 9.06e-01 -0.0217 0.184 0.92 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000116641 DOCK7 213948 eQTL 0.00592 0.0997 0.0361 0.0 0.0 0.0967
ENSG00000125703 ATG4C 118184 eQTL 0.037 0.0574 0.0275 0.0 0.0 0.0967

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000230798 \N -422125 1.07e-06 6.65e-07 1.59e-07 4.26e-07 9.77e-08 3.11e-07 6.18e-07 2.28e-07 6.92e-07 3.16e-07 9.39e-07 5.22e-07 9.79e-07 1.57e-07 3.13e-07 3.68e-07 5.63e-07 4.39e-07 2.88e-07 2.15e-07 2.55e-07 5.37e-07 3.99e-07 2.68e-07 1.02e-06 2.52e-07 4.25e-07 3.24e-07 5.41e-07 7.06e-07 3.67e-07 4.06e-08 4.83e-08 2.1e-07 3.71e-07 1.85e-07 1.82e-07 1.21e-07 8.26e-08 1.6e-08 1.22e-07 6.19e-07 6.11e-08 1.9e-08 1.69e-07 2.68e-08 1.43e-07 3.84e-08 5.94e-08